Query 031108
Match_columns 165
No_of_seqs 210 out of 1770
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 100.0 7.7E-36 1.7E-40 234.4 18.6 148 10-160 12-159 (159)
2 PRK08344 V-type ATP synthase s 100.0 1.2E-33 2.7E-38 221.5 18.1 145 14-158 2-155 (157)
3 PRK09621 V-type ATP synthase s 100.0 2.2E-33 4.8E-38 216.6 17.5 137 14-155 4-140 (141)
4 PRK14893 V-type ATP synthase s 100.0 1.7E-32 3.6E-37 215.9 19.0 150 11-160 7-158 (161)
5 PRK06649 V-type ATP synthase s 100.0 8.1E-31 1.7E-35 202.1 16.7 135 14-156 3-142 (143)
6 PRK06271 V-type ATP synthase s 100.0 4.7E-30 1E-34 209.9 18.3 141 12-158 70-210 (213)
7 PRK06271 V-type ATP synthase s 100.0 4.2E-30 9.2E-35 210.2 17.6 137 16-160 2-138 (213)
8 KOG0233 Vacuolar H+-ATPase V0 99.9 6.4E-28 1.4E-32 190.2 3.9 152 11-162 39-195 (196)
9 KOG0232 Vacuolar H+-ATPase V0 99.9 2.5E-24 5.3E-29 166.9 10.1 154 7-160 2-155 (156)
10 TIGR01100 V_ATP_synt_C vacuola 99.9 7.3E-24 1.6E-28 156.9 9.2 107 13-120 1-107 (108)
11 COG0636 AtpE F0F1-type ATP syn 99.7 8.7E-17 1.9E-21 113.2 10.0 70 91-160 6-79 (79)
12 PF00137 ATP-synt_C: ATP synth 99.7 1.7E-16 3.8E-21 107.8 10.1 66 93-158 1-66 (66)
13 PRK06876 F0F1 ATP synthase sub 99.7 6.8E-16 1.5E-20 108.4 10.3 71 89-159 3-77 (78)
14 CHL00061 atpH ATP synthase CF0 99.7 7.1E-16 1.5E-20 109.0 10.4 72 89-160 4-79 (81)
15 TIGR03322 alt_F1F0_F0_C altern 99.7 4.7E-16 1E-20 111.0 9.5 75 87-161 3-81 (86)
16 PRK13468 F0F1 ATP synthase sub 99.7 7.2E-16 1.6E-20 109.2 10.3 75 87-161 2-80 (82)
17 PRK07354 F0F1 ATP synthase sub 99.7 1.2E-15 2.7E-20 107.8 10.5 72 89-160 4-79 (81)
18 PRK06251 V-type ATP synthase s 99.7 1E-15 2.2E-20 112.4 10.1 72 88-159 30-101 (102)
19 PRK08482 F0F1 ATP synthase sub 99.6 3.6E-15 7.7E-20 110.0 10.4 74 88-161 26-103 (105)
20 PF00137 ATP-synt_C: ATP synth 99.6 1.9E-15 4.1E-20 102.7 8.2 66 14-79 1-66 (66)
21 PRK13471 F0F1 ATP synthase sub 99.6 4.2E-15 9.1E-20 105.9 10.1 70 89-158 11-84 (85)
22 PRK13469 F0F1 ATP synthase sub 99.6 6.9E-15 1.5E-19 103.6 10.1 69 89-158 6-78 (79)
23 PRK07558 F0F1 ATP synthase sub 99.6 9.2E-15 2E-19 101.7 9.5 68 90-158 3-74 (74)
24 PRK13464 F0F1 ATP synthase sub 99.6 7.3E-15 1.6E-19 107.4 9.2 75 89-163 10-88 (101)
25 MTH00222 ATP9 ATP synthase F0 99.6 1.8E-14 3.8E-19 101.0 9.7 69 89-158 4-76 (77)
26 PRK05880 F0F1 ATP synthase sub 99.6 3.2E-14 6.9E-19 100.5 10.6 73 88-160 3-79 (81)
27 COG0636 AtpE F0F1-type ATP syn 99.5 3E-14 6.5E-19 100.3 8.3 67 14-80 8-78 (79)
28 CHL00061 atpH ATP synthase CF0 99.5 6.3E-14 1.4E-18 99.1 8.1 66 14-79 8-77 (81)
29 PRK06251 V-type ATP synthase s 99.5 6.5E-14 1.4E-18 102.8 8.0 66 14-79 35-100 (102)
30 PRK13471 F0F1 ATP synthase sub 99.5 7.6E-14 1.7E-18 99.4 8.0 66 14-79 15-84 (85)
31 PRK07159 F0F1 ATP synthase sub 99.5 1.4E-13 2.9E-18 100.7 9.3 66 92-158 30-99 (100)
32 PRK13466 F0F1 ATP synthase sub 99.5 1.5E-13 3.3E-18 93.7 8.3 57 99-155 5-65 (66)
33 PRK13467 F0F1 ATP synthase sub 99.5 1.6E-13 3.4E-18 93.5 8.2 56 100-155 6-65 (66)
34 PRK13469 F0F1 ATP synthase sub 99.5 1.2E-13 2.5E-18 97.3 7.7 69 10-79 6-78 (79)
35 PRK06876 F0F1 ATP synthase sub 99.5 1.9E-13 4.2E-18 96.0 8.4 67 13-79 6-76 (78)
36 PRK14893 V-type ATP synthase s 99.5 3.5E-13 7.7E-18 106.3 10.2 74 88-161 5-78 (161)
37 PRK06558 V-type ATP synthase s 99.5 5.9E-13 1.3E-17 104.9 10.0 72 90-161 13-84 (159)
38 PRK07354 F0F1 ATP synthase sub 99.4 4.4E-13 9.5E-18 94.8 8.1 66 14-79 8-77 (81)
39 TIGR01260 ATP_synt_c ATP synth 99.4 4.5E-13 9.7E-18 89.2 6.8 53 106-158 2-58 (58)
40 PRK07874 F0F1 ATP synthase sub 99.4 1.1E-12 2.4E-17 92.4 8.4 63 88-154 13-79 (80)
41 PRK07558 F0F1 ATP synthase sub 99.4 1.3E-12 2.8E-17 90.9 8.1 65 13-78 5-73 (74)
42 TIGR03322 alt_F1F0_F0_C altern 99.4 1.7E-12 3.7E-17 92.7 8.1 67 13-79 8-78 (86)
43 PRK08482 F0F1 ATP synthase sub 99.4 1.7E-12 3.6E-17 95.9 8.3 67 13-79 30-100 (105)
44 PRK13468 F0F1 ATP synthase sub 99.4 1.8E-12 3.9E-17 91.9 8.1 67 13-79 7-77 (82)
45 PRK08344 V-type ATP synthase s 99.4 2.6E-12 5.7E-17 101.0 9.4 66 93-158 2-67 (157)
46 PRK07159 F0F1 ATP synthase sub 99.3 5.1E-12 1.1E-16 92.5 7.9 65 14-79 31-99 (100)
47 MTH00222 ATP9 ATP synthase F0 99.3 5.9E-12 1.3E-16 88.2 7.8 66 13-79 7-76 (77)
48 PRK13464 F0F1 ATP synthase sub 99.3 7.2E-12 1.6E-16 91.7 7.8 67 14-80 14-84 (101)
49 PRK09621 V-type ATP synthase s 99.3 2.3E-11 4.9E-16 94.2 9.0 70 93-162 4-73 (141)
50 PRK13467 F0F1 ATP synthase sub 99.3 1.4E-11 3.1E-16 83.9 7.0 56 21-76 6-65 (66)
51 PRK13466 F0F1 ATP synthase sub 99.3 1.4E-11 3.1E-16 83.9 6.7 57 20-76 5-65 (66)
52 PRK05880 F0F1 ATP synthase sub 99.3 3.7E-11 8E-16 85.0 8.3 66 14-79 8-77 (81)
53 TIGR01260 ATP_synt_c ATP synth 99.2 2.6E-11 5.6E-16 80.8 5.9 53 26-78 1-57 (58)
54 PRK07874 F0F1 ATP synthase sub 99.2 2.5E-11 5.3E-16 85.6 6.0 56 20-75 20-79 (80)
55 TIGR01100 V_ATP_synt_C vacuola 99.2 1.1E-10 2.4E-15 86.6 8.6 70 93-162 2-71 (108)
56 PRK06649 V-type ATP synthase s 99.1 3.3E-10 7.2E-15 87.8 8.0 65 13-77 78-142 (143)
57 KOG0232 Vacuolar H+-ATPase V0 98.7 1.9E-08 4.2E-13 78.5 4.5 71 10-80 82-154 (156)
58 KOG3025 Mitochondrial F1F0-ATP 98.4 8.5E-07 1.8E-11 66.6 6.2 70 88-158 63-136 (137)
59 KOG0233 Vacuolar H+-ATPase V0 98.2 9.2E-08 2E-12 76.2 -2.8 73 89-161 38-110 (196)
60 KOG3025 Mitochondrial F1F0-ATP 97.4 0.00038 8.2E-09 52.5 5.4 65 14-79 68-136 (137)
61 PF11947 DUF3464: Protein of u 36.4 1.5E+02 0.0033 23.2 6.3 54 53-111 63-116 (153)
62 PF04284 DUF441: Protein of un 33.7 73 0.0016 24.8 4.0 39 102-140 79-117 (140)
63 PF06796 NapE: Periplasmic nit 24.4 1.6E+02 0.0035 19.3 3.8 21 57-77 29-49 (56)
64 TIGR03818 MotA1 flagellar moto 23.3 2.5E+02 0.0054 24.0 5.9 32 44-78 190-221 (282)
65 TIGR02973 nitrate_rd_NapE peri 22.2 2.1E+02 0.0045 17.8 4.1 22 56-77 15-36 (42)
66 TIGR02972 TMAO_torE trimethyla 21.2 2.1E+02 0.0045 18.2 3.7 22 56-77 20-41 (47)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=7.7e-36 Score=234.38 Aligned_cols=148 Identities=29% Similarity=0.492 Sum_probs=141.2
Q ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031108 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~ 89 (165)
.+++++++|++++++++++||++|+++++.+++++++||||.++|.+++++|+|+++|||+++++++.+++++ ++++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~---~~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP---ELSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cccH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999998754 2678
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
.+++.++++|+++|++++++|++||+++++++++++||||+|.|+++..+|+|+++||+|++++++.++.+
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~~ 159 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGVK 159 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987753
No 2
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=1.2e-33 Score=221.49 Aligned_cols=145 Identities=26% Similarity=0.367 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--C------CCcc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI--N------PKAK 85 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i--~------~~~~ 85 (165)
|.++|++++++++++|++||+++++++++++++||||.++|++++.++||+++|||+|++|++..+. . ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 6789999999999999999999999999999999999999999999999999999999987664321 1 1123
Q ss_pred cccHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP-KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p-~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
++++.+++.++++|+++|++++++|++||+++++++++++||| |+|+++++..+|+|+++||+++++++++.-
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999 999999999999999999999999998753
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=2.2e-33 Score=216.56 Aligned_cols=137 Identities=21% Similarity=0.356 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHH
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~~~~~ 93 (165)
+.++|++++++++++||+||++++|+++++++.|+||.++|.++..++||+|+|||+|+++++..++++. ..+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887642 45889
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 94 ~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll 155 (165)
..+++|+.+|+++++|+++||+++++++++++||||.++|+++..+++|+++||++++++++
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 4
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=1.7e-32 Score=215.86 Aligned_cols=150 Identities=24% Similarity=0.452 Sum_probs=138.6
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccccc
Q 031108 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK--AKSYY 88 (165)
Q Consensus 11 ~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~--~~~~~ 88 (165)
.+.+.++|++++++++++|+++|+++++.+++++++||||.++++++..+++|+++||++++++++.++.+.. .++++
T Consensus 7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~~ 86 (161)
T PRK14893 7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLS 86 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccch
Confidence 3458899999999999999999999999999999999999999999999999999999999999998753221 23567
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
+.+++.++++++++|+++++++++||+++++++++++||||.|.|+++..+++|+++||+|++++++++..+
T Consensus 87 ~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~~~ 158 (161)
T PRK14893 87 VTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVFGG 158 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999999999999999999999999999999999999999999999999999999999999987653
No 5
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=8.1e-31 Score=202.10 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccc-----cchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~-----~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~ 88 (165)
++++|++++++++++||++|++++|.++.+.+.| |||.+. .++.+.+|.||+|||||+++++.. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 6799999999999999999999999999999998 999998 999999999999999999999986 256
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 156 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~ 156 (165)
+.+++.++++|+++|++++.|++.||++++++++.++||||.|+|+++..+|+|+++||+|++++++.
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999864
No 6
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=4.7e-30 Score=209.94 Aligned_cols=141 Identities=25% Similarity=0.446 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHh
Q 031108 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (165)
Q Consensus 12 ~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~~~ 91 (165)
+.|.++|++++++++++ |++++++++++++++.+||||.++|+++..+|+|+++|||+|+++++..+++++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 45899999999999999 789999999999999999999999999999999999999999999999886543 3467
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
++.++++|+++|++++ +|++||+++++++++++||||.+.|+++..+++|+++||++++++++++.
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~ 210 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLG 210 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999998864
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=4.2e-30 Score=210.21 Aligned_cols=137 Identities=29% Similarity=0.478 Sum_probs=130.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHHHH
Q 031108 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (165)
Q Consensus 16 ~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~~~~~~~ 95 (165)
.+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++||++++++++.++.++ .++|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999987542 379999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 96 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 96 l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
+++|+++|++++ |+++||+++++++++++||||.|+|+++..+++|+++|||++++++++.+.+
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~ 138 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVF 138 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998 7899999999999999999999999999999999999999999999987754
No 8
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.94 E-value=6.4e-28 Score=190.25 Aligned_cols=152 Identities=36% Similarity=0.700 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----c
Q 031108 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA-----K 85 (165)
Q Consensus 11 ~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~-----~ 85 (165)
+++|+.+|.++|++|+.+|++||+-..|++..++..|.||+.+|+++.++|||+.+|||+|+++++..|.++.+ +
T Consensus 39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~ 118 (196)
T KOG0233|consen 39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG 118 (196)
T ss_pred hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence 34599999999999999999999999999999999999999999999999999999999999999999876642 2
Q ss_pred cccHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031108 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~~ 162 (165)
..++.+++..+++|+.+|++.+.+|++.|++|+.+..++|+||.+|.|.++.++|..++++||+++++++..|..+.
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~~~ 195 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKASMG 195 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccccC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999998886643
No 9
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.91 E-value=2.5e-24 Score=166.92 Aligned_cols=154 Identities=70% Similarity=1.137 Sum_probs=146.9
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 031108 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (165)
Q Consensus 7 ~~~~~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~ 86 (165)
.|.++||+...|++.+..++++|+++|+.+.+...+.....+||+.+|++++++|+...+|||++++.++..++++..+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred ccHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
+++.+++..+++++.+|++++.+|+.+|+++.+.+...+|||++|..+++..+|.|.+++|+|++++.+.++.+
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~~ 155 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVGG 155 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987754
No 10
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.90 E-value=7.3e-24 Score=156.93 Aligned_cols=107 Identities=70% Similarity=1.229 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhH
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~~~~ 92 (165)
+++++|++++++|+++||+||++++|.+-+.+..++||+++|++++++|||+|+|||||+++++..++++++ ++++.++
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 478999999999999999999999997767777777999999999999999999999999999999986542 4789999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 031108 93 YAHLSSGLACGLAGLSAGMAIGIVGDAG 120 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~ 120 (165)
+.++++||++|++++.||+.||+++++.
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999998653
No 11
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.71 E-value=8.7e-17 Score=113.20 Aligned_cols=70 Identities=44% Similarity=0.721 Sum_probs=67.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
+++.++++|+.+|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++.++.+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~ 79 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP 79 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999 9999999999999999999999999998753
No 12
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.70 E-value=1.7e-16 Score=107.78 Aligned_cols=66 Identities=42% Similarity=0.715 Sum_probs=64.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
|+++++++++|++++++++++|+++++++++++||||+|+++++..+++|+++||+++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999875
No 13
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.67 E-value=6.8e-16 Score=108.37 Aligned_cols=71 Identities=25% Similarity=0.451 Sum_probs=66.7
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~ 159 (165)
+..+.+.+++|+++|++++++|+|+|.++++++++++|||| +++++++..+++|+++||+++++++++|..
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~ 77 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFAN 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999996 778999999999999999999999999875
No 14
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.67 E-value=7.1e-16 Score=109.04 Aligned_cols=72 Identities=33% Similarity=0.549 Sum_probs=67.2
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
...+++.+++|+++|++++++|+++|+++++++++++|||| +++++++..+++|+++||+++++++++|..+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p 79 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANP 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34667899999999999999999999999999999999996 7788999999999999999999999999865
No 15
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.67 E-value=4.7e-16 Score=111.02 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=69.5
Q ss_pred ccHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
.++..+++.+++|+.+|++++++|+|||+++++++++++|||| +++++++..+++|+++||++++++++++..+.
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~ 81 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPF 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999997 58999999999999999999999999987653
No 16
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.67 E-value=7.2e-16 Score=109.24 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=69.3
Q ss_pred ccHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
.++.++.+.+++|+++|++++++|++||+++++++++++|||| +++++++..+++|+++||+++++++++|..++
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~ 80 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF 80 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567888999999999999999999999999999999999996 77789999999999999999999999988654
No 17
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.66 E-value=1.2e-15 Score=107.81 Aligned_cols=72 Identities=29% Similarity=0.505 Sum_probs=67.2
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
...+++++++|+++|++++++|++||+++++++++++|||| +++++++..+++|+++||++++++++++..+
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p 79 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANP 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44667999999999999999999999999999999999997 6888899999999999999999999998865
No 18
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.65 E-value=1e-15 Score=112.36 Aligned_cols=72 Identities=24% Similarity=0.490 Sum_probs=68.0
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~ 159 (165)
....+.+++++|+++|++++++|++||+++++++++++||||.+.++++..+++|+++||++++++++++..
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~ 101 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGK 101 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778999999999999999999999999999999999999999999999999999999999999988753
No 19
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.63 E-value=3.6e-15 Score=110.03 Aligned_cols=74 Identities=24% Similarity=0.474 Sum_probs=69.6
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
++..+.+.+++|+++|++++++|+|+|+++++++++++|||| +++++++..+++|+++||+++++++++|..+.
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~ 103 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457888999999999999999999999999999999999996 88889999999999999999999999998765
No 20
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.62 E-value=1.9e-15 Score=102.70 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
|.++|++++++++++|+++|+++++.+++++.+||||.++|++++.+|+|+++||++++++++.++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999998764
No 21
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.62 E-value=4.2e-15 Score=105.90 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=65.6
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
...+.+++++|+++|++++++|+|+|.++++++++++|||| ++++++++.+++|+++||++++++++++.
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999999999999997 66799999999999999999999999875
No 22
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.61 E-value=6.9e-15 Score=103.56 Aligned_cols=69 Identities=39% Similarity=0.644 Sum_probs=65.1
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
+..+++++++|+++ ++++++|+++|+++++++++++|||| +++++++..+++|+++||++++++++++.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999 99999999999999999999999996 88888999999999999999999999875
No 23
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.60 E-value=9.2e-15 Score=101.72 Aligned_cols=68 Identities=19% Similarity=0.399 Sum_probs=64.0
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
..+.+.+++|+++ ++++++|+|+|+++++++++++|||| +++++++..+++|+++||+++++++++|.
T Consensus 3 ~~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 3 AEALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred HhHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999 99999999999999999999999997 99999999999999999999999998873
No 24
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.59 E-value=7.3e-15 Score=107.41 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=69.7
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQSR 163 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~~~ 163 (165)
...+...+++++.+|++++++|+|+|+++++++++++|||| +++++++..+++|+++||+++++++++|..+..+
T Consensus 10 ~l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~~ 88 (101)
T PRK13464 10 NLNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLAI 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34577899999999999999999999999999999999996 9999999999999999999999999999877553
No 25
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.58 E-value=1.8e-14 Score=100.98 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=65.2
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
...+.+.+++|+.+ ++++++|+|+|+++++.+++++|||| +++++++..+++|+++||+++++++++|.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999 99999999999999999999999996 99999999999999999999999999875
No 26
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.57 E-value=3.2e-14 Score=100.53 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=67.9
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
+...+.+++++|+.+|++++++|+|+|++.++++++++|||| ++++++++.+++|++.+|.+++.+++.+..+
T Consensus 3 ~~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p 79 (81)
T PRK05880 3 PTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP 79 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778999999999999999999999999999999999996 9999999999999999999999999888765
No 27
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.54 E-value=3e-14 Score=100.32 Aligned_cols=67 Identities=28% Similarity=0.508 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccch----hHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe----~~~~~li~~~~~e~~~IYglIia~li~~~i 80 (165)
+.+++++++++++++|+++|+|+++.+.+++.+|||| +++++++..+|+|+++||++++++++.++.
T Consensus 8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999999999999 999999999999999999999999998763
No 28
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.51 E-value=6.3e-14 Score=99.11 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
+..++++++++++++|+++|+|.++++++++++||||.. +++++..+|+|+++||++++++++.+.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999965 559999999999999999999999876
No 29
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.51 E-value=6.5e-14 Score=102.81 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
..++|++++++++++|+++|++.++++++++++||||.++++++..+|+|+++||+++++|++.+.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999998754
No 30
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.51 E-value=7.6e-14 Score=99.45 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~----~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
..++|++++++++++|+++|+|.++.+++++++||||.++ ++++..+++|+++||+++++|++.+.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999775 68999999999999999999998764
No 31
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.50 E-value=1.4e-13 Score=100.75 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=62.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
.++.+++|+++ ++++++|+|||.++++++++++|||| +++++++..+++|+++||++++++++++.
T Consensus 30 ~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 30 KAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999 99999999999999999999999997 78889999999999999999999999875
No 32
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.49 E-value=1.5e-13 Score=93.65 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 99 GLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 99 gl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll 155 (165)
++++|++++++|+|+|.+.++++++++|||| +++++++..+++|+++||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999996 99999999999999999999999975
No 33
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.49 E-value=1.6e-13 Score=93.54 Aligned_cols=56 Identities=30% Similarity=0.375 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 100 LACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 100 l~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll 155 (165)
+..|++++++|+|+|.++++++++++|||| +++++++..++.|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999996 99999999999999999999999976
No 34
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.49 E-value=1.2e-13 Score=97.32 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=61.7
Q ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 10 ~~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
+...+.++|+++++ ++++|+++|+|.++++++++++||||.+ +++++..+|+|+++||++++++++.+.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33447899999999 9999999999999999999999999955 446899999999999999999998754
No 35
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.48 E-value=1.9e-13 Score=95.97 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~----~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
....++++++++++++|+++|+|.++.+++++++||||..+ ++++..+++|+++||++++++++.+.
T Consensus 6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999764 79999999999999999999998875
No 36
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.47 E-value=3.5e-13 Score=106.30 Aligned_cols=74 Identities=31% Similarity=0.537 Sum_probs=69.7
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
+...+++.+++++++|++++++++|+|+++++++++++||||.++++++..+++|+++||+++++++++++.+.
T Consensus 5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~ 78 (161)
T PRK14893 5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGL 78 (161)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999986654
No 37
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.45 E-value=5.9e-13 Score=104.88 Aligned_cols=72 Identities=22% Similarity=0.491 Sum_probs=68.5
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
...+.++++++++++++++|++++|+++++++++.+||||.++|.++..+++|+++|||+++++++++|.++
T Consensus 13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~ 84 (159)
T PRK06558 13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999998743
No 38
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.45 E-value=4.4e-13 Score=94.81 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
+.++|++++++++++|+++|+|.++++++++++||||.. +++++..+|+|+.+||++++++++.+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999964 557999999999999999999998876
No 39
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.43 E-value=4.5e-13 Score=89.22 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 106 GLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 106 ~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
++++|+|+|.++++++++++|||| +++++++..+++|+++||+++++++++++
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999996 69999999999999999999999998864
No 40
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.41 E-value=1.1e-12 Score=92.42 Aligned_cols=63 Identities=38% Similarity=0.637 Sum_probs=55.6
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGII 154 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~l 154 (165)
+...+.+.+++ |++++++|+|+|.++++++++++|||| ++++++++.+++|+.+||+++++|+
T Consensus 13 ~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 13 TTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666554 566789999999999999999999996 9999999999999999999999986
No 41
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.40 E-value=1.3e-12 Score=90.93 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccch----hHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe----~~~~~li~~~~~e~~~IYglIia~li~~ 78 (165)
....+|+++++ ++++|+++|+|.+..+++++++|||| +++++++..++.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 99999999999999999999999999 6678999999999999999999999865
No 42
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.39 E-value=1.7e-12 Score=92.74 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
.+..+|++++++++++|+++|+|++..+++++++||||.. +++++..+++|+.+||++++++++.+.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999975 568899999999999999999998876
No 43
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.39 E-value=1.7e-12 Score=95.86 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~----~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
....+|+++++|++++|+++|+|.++.+++++++||||... ++++..+++|+.+||++++++++.+.
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999764 48999999999999999999999876
No 44
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.39 E-value=1.8e-12 Score=91.87 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~----~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
....+|++++++++++|+++|+|+++.+++++++||||.++ ++++..+++|+.+||++++++++.+.
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999764 57888999999999999999998776
No 45
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.38 E-value=2.6e-12 Score=100.98 Aligned_cols=66 Identities=30% Similarity=0.507 Sum_probs=62.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
|..+++++++|+++++|++|+++++++++++.+||||+++|+++..+++|+++|||+|+++++..+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~ 67 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999998776543
No 46
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.33 E-value=5.1e-12 Score=92.48 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
...+|+++++ ++++|+++|+|.++.+++++++||||.. +++++..+++|+++||++++++++.+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 9999999999999999999999999965 558999999999999999999998753
No 47
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.33 E-value=5.9e-12 Score=88.24 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
....+|+++++ ++++|+++|+|.+..+.+++++||||.. +++++..++.|+.+||++++++++.+.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999 9999999999999999999999999965 569999999999999999999998764
No 48
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.32 E-value=7.2e-12 Score=91.70 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~i 80 (165)
...++++++++++++|+++|+|.+.++.+++++||||.. +++++..++.|+.+||++++++++.+..
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999954 6699999999999999999999998873
No 49
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.28 E-value=2.3e-11 Score=94.21 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=66.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031108 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~~ 162 (165)
+.++++++++++++++|++|++.++++++....|+||.|.|.++..++||+++|||++++++++.+.+.+
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~ 73 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999876543
No 50
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.28 E-value=1.4e-11 Score=83.91 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=50.8
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHH
Q 031108 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 21 la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li 76 (165)
++.+++++|+++|+|.+..+++++++||||.. +++++..++.|+.+||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667788999999999999999999999965 569999999999999999999986
No 51
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.27 E-value=1.4e-11 Score=83.94 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHH
Q 031108 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 20 ~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li 76 (165)
+++++++++|+++|+|.+..+.+++++||||.. +++++..++.|+++||+++++|++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477889999999999999999999999999965 569999999999999999999985
No 52
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.25 E-value=3.7e-11 Score=84.96 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
..++|++++++++++|+++|+|.+.++++++++||||.. +++++..+++|++.+|.+++.+++.+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999955 669999999999999998888887765
No 53
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.22 E-value=2.6e-11 Score=80.76 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.4
Q ss_pred hhhhhHHHHHHHHHHHhccccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031108 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 26 a~iGsg~G~g~ag~a~~~a~~~~Pe~----~~~~li~~~~~e~~~IYglIia~li~~ 78 (165)
+++|+++|+|.+.++++++++||||. ++++++..++.|+.+||++++++++.+
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 678999999999999999999999865
No 54
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.22 E-value=2.5e-11 Score=85.62 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=50.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHH
Q 031108 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVI 75 (165)
Q Consensus 20 ~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~l 75 (165)
.++.|++++|+++|+|.+..+++++++||||.. +++++..++.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667779999999999999999999999965 56999999999999999999986
No 55
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.19 E-value=1.1e-10 Score=86.59 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=63.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031108 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~~ 162 (165)
+.++++.+++++++++|+||.++.+..-...-.++||++.|.++..+++|+++|||||++++++.|.+.+
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~ 71 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK 71 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 5678999999999999999999999777776677799999999999999999999999999999998654
No 56
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.11 E-value=3.3e-10 Score=87.76 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 031108 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~ 77 (165)
.+.+++++++++++...|++.+|+++++.+++.+||||.++|+++..+|+|+.++|+|++++++.
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999999999999999999999999999999999999998864
No 57
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.69 E-value=1.9e-08 Score=78.49 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=66.3
Q ss_pred cchh--HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031108 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 10 ~~~~--~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i 80 (165)
+.++ +..+++++.+++++.++++.+++.+++.++..+|||+.+..+++..+|.|++++|||+++..+.++.
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555 8899999999999999999999999999999999999999999999999999999999999987653
No 58
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=98.39 E-value=8.5e-07 Score=66.62 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=63.1
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p----~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
.+....+++++|... ++..++|.|+|.+.++-+.+.+||| ++|...+++.++.|+.++|.|.++|++++.
T Consensus 63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 367888999999875 6667899999999999999999999 489999999999999999999999999874
No 59
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.20 E-value=9.2e-08 Score=76.24 Aligned_cols=73 Identities=30% Similarity=0.458 Sum_probs=68.7
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031108 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
...-|+.++.+++++++.++++||+=..+++-+.+--|-|++.+|.++..+|||+++||+++++++++.|..+
T Consensus 38 sp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~ 110 (196)
T KOG0233|consen 38 SPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLEN 110 (196)
T ss_pred ChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhcc
Confidence 3566899999999999999999999999999999999999999999999999999999999999999988754
No 60
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=97.40 E-value=0.00038 Score=52.48 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031108 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
-.++|++.+. ....|+|.|+|.+-.+-+.+.+|+|.+. ...+++.++.|+.++|.+-++|++++.
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5689988876 5678899999999999999999999854 557899999999999999999998763
No 61
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.38 E-value=1.5e+02 Score=23.25 Aligned_cols=54 Identities=17% Similarity=0.060 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHHHHHHhhhHHHHHHHHHHH
Q 031108 53 MKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGM 111 (165)
Q Consensus 53 ~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~~~~~~~l~agl~~Gla~~gsgi 111 (165)
.++.+....|-.+++=-++++.++..+-.-+ .-....++...++.|++.+|-.+
T Consensus 63 rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~d-----vP~~~~~~~S~~~Fg~gllGisY 116 (153)
T PF11947_consen 63 RRMAVFVGIPTALGVAVFVVFYYLKSRQIVD-----VPPWAVLLVSLVFFGLGLLGISY 116 (153)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHhccccc-----cCchHHHHHHHHHHHHHHHhhhh
Confidence 4678888888888888888888777653221 22333444444444555444333
No 62
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=33.68 E-value=73 Score=24.77 Aligned_cols=39 Identities=28% Similarity=0.545 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 031108 102 CGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIF 140 (165)
Q Consensus 102 ~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~ 140 (165)
.|+.++.+|+-....++++++-+..|||+..-++++..+
T Consensus 79 ~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIi 117 (140)
T PF04284_consen 79 KGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTII 117 (140)
T ss_pred HHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHH
Confidence 567777888888999999999999999988887776654
No 63
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=24.40 E-value=1.6e+02 Score=19.35 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031108 57 VPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 57 i~~~~~e~~~IYglIia~li~ 77 (165)
.++.-...++-|||++.++=.
T Consensus 29 ~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 29 FPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556688899999988643
No 64
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=23.26 E-value=2.5e+02 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=20.7
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031108 44 MGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 44 a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~ 78 (165)
.+..+|+..+.. +..+|.. .+||...+.++..
T Consensus 190 ~l~~dp~~lG~~-iA~Alv~--TlyGv~lAn~i~~ 221 (282)
T TIGR03818 190 SIDGPPEVLGVL-IAAALVG--TFLGILLAYGFVG 221 (282)
T ss_pred hcCCCHHHHHHH-HHHHHHH--HHHHHHHHHHHHH
Confidence 344578776543 4445544 4899999998764
No 65
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=22.16 E-value=2.1e+02 Score=17.78 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031108 56 IVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 56 li~~~~~e~~~IYglIia~li~ 77 (165)
+.++.-...++-||+++.+.=.
T Consensus 15 l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 15 IWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556688889999887643
No 66
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.24 E-value=2.1e+02 Score=18.20 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031108 56 IVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 56 li~~~~~e~~~IYglIia~li~ 77 (165)
+.|+.-...++-||+++.+.=.
T Consensus 20 l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 20 LFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556678889999987643
Done!