BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031109
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13019|BLMH_RABIT Bleomycin hydrolase (Fragment) OS=Oryctolagus cuniculus GN=BLMH
PE=1 SV=1
Length = 277
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 41 MSTTTIEKLGVKIERNPPESKLTELGVR--------------QWPKHCHTGG-QPRVLPS 85
M IEK GV ++ PES TE R + H+G + + +
Sbjct: 129 MLVNIIEKYGVVPKKCFPESHTTEASRRMNDILNHKMREFCIRLRNMVHSGATKAEISAT 188
Query: 86 KKTHLEAIWRI--LRWGCPPSKFPWTYSDKETCY 117
+ T +E I+R+ + G PP F W Y DK+ Y
Sbjct: 189 EDTMMEEIFRVVCICLGNPPETFTWEYRDKDKNY 222
>sp|Q9ZFV5|EUTQ_SALTY Ethanolamine utilization protein EutQ OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=eutQ PE=1 SV=1
Length = 229
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 106 FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTW 152
FPWT + E +LEG++ V +G E + AGD++ PKG S +
Sbjct: 165 FPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEF 209
>sp|C0QSF6|DNLJ_PERMH DNA ligase OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=ligA PE=3 SV=1
Length = 714
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 69 QWPKHCHTGGQPRVLPSKKTHLEAIWRILRWGCP 102
Q+PK C + G P V P+ EA+WR + CP
Sbjct: 438 QFPKECPSCGSPLVKPAG----EAVWRCININCP 467
>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3
PE=1 SV=1
Length = 660
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 18 SPRSKTSHHFSTRRRVVVVRAEAMSTTTI--EKLGVKIERNPPESKLTELGVRQWPKHCH 75
+P S R R V++ EA+S T+ ++GVK + P S+ + Q P
Sbjct: 474 NPSEGVSLPAGDRPRAKVLKIEAVSDTSAPQAQVGVKQDARQPGSEKASVRAEQMPGQLA 533
Query: 76 TGGQPRVLPSKKTHLEAIWRILR 98
G P V P+ LE+ +R LR
Sbjct: 534 AAGLPPV-PANSFQLESDFRQLR 555
>sp|P76555|EUTQ_ECOLI Ethanolamine utilization protein EutQ OS=Escherichia coli (strain
K12) GN=eutQ PE=4 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 106 FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHY 162
FPWT + E +LEG++ V +G + AGD++ PKG S + + V Y
Sbjct: 169 FPWTLNYDEIDMVLEGELHVRHEGQT--MIAKAGDVMFIPKGSSIEFGTTSSVKFLY 223
>sp|P70645|BLMH_RAT Bleomycin hydrolase OS=Rattus norvegicus GN=Blmh PE=1 SV=1
Length = 454
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 41 MSTTTIEKLGVKIERNPPESKLTELGVR-------QWPKHC-------HTGG-QPRVLPS 85
M +EK GV ++ PES TE R + + C H+G + + +
Sbjct: 149 MLVNIVEKYGVVPKKCFPESHTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISST 208
Query: 86 KKTHLEAIWRI--LRWGCPPSKFPWTYSDKETCY 117
+ +E I+R+ + G PP F W Y DK+ Y
Sbjct: 209 QDAMMEEIFRVVCICLGNPPETFTWEYRDKDKNY 242
>sp|Q8R016|BLMH_MOUSE Bleomycin hydrolase OS=Mus musculus GN=Blmh PE=2 SV=1
Length = 455
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 41 MSTTTIEKLGVKIERNPPESKLTELGVR-------QWPKHC-------HTGG-QPRVLPS 85
M +EK GV ++ PES TE R + + C H+G + + +
Sbjct: 149 MLVNIVEKYGVVPKKCFPESHTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISST 208
Query: 86 KKTHLEAIWRI--LRWGCPPSKFPWTYSDKETCY 117
+ +E I+R+ + G PP F W Y DK+ Y
Sbjct: 209 QDAMMEEIFRVVCICLGNPPETFTWEYRDKDKNY 242
>sp|P87362|BLMH_CHICK Bleomycin hydrolase OS=Gallus gallus GN=BLMH PE=1 SV=1
Length = 455
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 41 MSTTTIEKLGVKIERNPPESKLTELGVR-------QWPKHC-------HTG-GQPRVLPS 85
M +EK GV ++ PES TE R + ++C TG + + +
Sbjct: 149 MLVNIVEKYGVVPKKYFPESHTTEATRRMNEILNHKMREYCLRLRNMVATGTNKEELCAA 208
Query: 86 KKTHLEAIWRILR--WGCPPSKFPWTYSDKETCY 117
T +E ++RI+ G PP F W + DKE Y
Sbjct: 209 MDTMIEEVFRIVSTCLGNPPETFCWEFRDKEKNY 242
>sp|Q13867|BLMH_HUMAN Bleomycin hydrolase OS=Homo sapiens GN=BLMH PE=1 SV=1
Length = 455
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 41 MSTTTIEKLGVKIERNPPESKLTELGVR-------QWPKHC-------HTGG-QPRVLPS 85
M +EK GV ++ PES TE R + + C H+G + + +
Sbjct: 149 MLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISAT 208
Query: 86 KKTHLEAIWRI--LRWGCPPSKFPWTYSDKETCY 117
+ +E I+R+ + G PP F W Y DK+ Y
Sbjct: 209 QDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNY 242
>sp|O02799|STAT2_PIG Signal transducer and activator of transcription 2 OS=Sus scrofa
GN=STAT2 PE=2 SV=1
Length = 864
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 22 KTSHHFSTRRRVVVVRAEAMSTTTIEKLGVKIERNPPESKLTELGVRQWPKHCHTGGQPR 81
KT F+ R R++V E + T E V I+RNPP+S+ G R++ + T +
Sbjct: 335 KTGSKFTVRTRLLVRLQEGNESLTAE---VSIDRNPPKSQ----GFRKF--NILTSNRKT 385
Query: 82 VLPSKKTHLEAIW 94
+ P K IW
Sbjct: 386 LTPEKGQSQGLIW 398
>sp|Q06178|NMA1_YEAST Nicotinamide-nucleotide adenylyltransferase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NMA1 PE=1
SV=1
Length = 401
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 1 MACVSSSSFLLLK-----QPTFSPRSKTSHHFSTRRRVVVVRAEAMSTTTIEKLGVKI 53
+AC +SS+L++ QP+++ +K HF+ + ++ ++T T EK+GVKI
Sbjct: 229 LACERTSSWLMVDAWESLQPSYTRTAKVLDHFNHE---INIKRGGVATVTGEKIGVKI 283
>sp|Q8IWB9|TEX2_HUMAN Testis-expressed sequence 2 protein OS=Homo sapiens GN=TEX2 PE=1
SV=2
Length = 1127
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 22 KTSHHFSTRRRVVVVRAEAMSTTTIEKLGVKIERNPPESKLTELGVRQWPKHCHTGGQPR 81
K S H + R ++ +++ST T + + PP+SKL +Q+ + +TGG +
Sbjct: 202 KESPHPARHRHLMKTLVKSLSTDTSRQESDTVSYKPPDSKLNLHLFKQFTQPRNTGGDSK 261
Query: 82 VLPS 85
PS
Sbjct: 262 TAPS 265
>sp|Q6EIG7|CLC6A_HUMAN C-type lectin domain family 6 member A OS=Homo sapiens GN=CLEC6A
PE=2 SV=1
Length = 209
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 95 RILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVF 144
++ WGC P+ + S +CY + + KV+ VE+GA LVVF
Sbjct: 72 KVPAWGCCPASWK---SFGSSCYFISSEEKVWSKSEQNCVEMGA-HLVVF 117
>sp|Q8N7X0|ADGB_HUMAN Androglobin OS=Homo sapiens GN=ADGB PE=2 SV=3
Length = 1667
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 73 HCHTGGQPRVLPSKKTHLEAIWRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNE 132
H TG P V+ +++ +W +L+ P K S + +L+ K+K E
Sbjct: 267 HALTGWLPEVISLHPGYMDKVWELLKEILPEFKLSDEASSESKIAVLDSKLKEPGKEGKE 326
Query: 133 GVEIGAGDLV 142
G EI G V
Sbjct: 327 GKEIKDGKEV 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,031,991
Number of Sequences: 539616
Number of extensions: 2794410
Number of successful extensions: 5533
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5528
Number of HSP's gapped (non-prelim): 15
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)