Query 031109
Match_columns 165
No_of_seqs 213 out of 832
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3450 Predicted enzyme of th 100.0 2.7E-31 5.8E-36 202.6 12.8 89 75-164 25-114 (116)
2 PF05899 Cupin_3: Protein of u 99.9 2.5E-25 5.4E-30 156.1 10.6 71 91-162 3-74 (74)
3 PF06249 EutQ: Ethanolamine ut 99.5 2.5E-13 5.3E-18 108.2 10.2 88 75-164 54-145 (152)
4 COG4766 EutQ Ethanolamine util 99.4 1.4E-12 3.1E-17 104.4 9.3 88 75-164 78-168 (176)
5 PRK15457 ethanolamine utilizat 99.3 1.6E-11 3.4E-16 103.6 9.9 86 77-164 137-225 (233)
6 PF07883 Cupin_2: Cupin domain 98.6 6.3E-07 1.4E-11 59.7 9.2 59 97-157 1-62 (71)
7 COG3837 Uncharacterized conser 98.4 3.2E-07 7E-12 73.7 4.8 53 98-152 46-102 (161)
8 PRK13290 ectC L-ectoine syntha 98.3 8.9E-06 1.9E-10 62.5 11.0 68 95-163 36-106 (125)
9 COG0662 {ManC} Mannose-6-phosp 98.3 1.1E-06 2.4E-11 66.8 5.6 54 102-157 47-100 (127)
10 TIGR03037 anthran_nbaC 3-hydro 98.3 2.2E-06 4.9E-11 68.9 7.1 68 86-154 22-92 (159)
11 PRK13264 3-hydroxyanthranilate 98.2 3.1E-06 6.7E-11 69.1 6.7 70 83-154 25-98 (177)
12 COG1917 Uncharacterized conser 98.1 1.9E-05 4E-10 59.5 8.6 62 94-157 43-107 (131)
13 PRK09943 DNA-binding transcrip 97.9 3.1E-05 6.6E-10 61.8 7.0 57 98-156 111-170 (185)
14 PF00190 Cupin_1: Cupin; Inte 97.9 8.4E-05 1.8E-09 57.0 9.0 68 96-164 36-118 (144)
15 smart00835 Cupin_1 Cupin. This 97.9 0.00012 2.6E-09 56.3 9.3 62 94-155 30-98 (146)
16 PF02311 AraC_binding: AraC-li 97.9 0.0001 2.3E-09 52.8 8.1 57 104-162 14-73 (136)
17 PRK11171 hypothetical protein; 97.8 0.00027 5.8E-09 60.2 10.2 60 94-155 61-124 (266)
18 TIGR03404 bicupin_oxalic bicup 97.8 0.00022 4.7E-09 63.7 9.9 63 94-156 245-313 (367)
19 TIGR01479 GMP_PMI mannose-1-ph 97.7 0.00021 4.5E-09 65.2 9.0 62 93-156 375-439 (468)
20 TIGR03214 ura-cupin putative a 97.6 0.00064 1.4E-08 57.8 10.0 60 94-155 58-121 (260)
21 PRK10579 hypothetical protein; 97.6 0.00054 1.2E-08 50.9 8.2 63 94-158 25-87 (94)
22 PF06865 DUF1255: Protein of u 97.6 0.00048 1E-08 51.2 7.7 63 94-158 25-87 (94)
23 TIGR03404 bicupin_oxalic bicup 97.4 0.00038 8.3E-09 62.1 6.8 49 106-156 82-134 (367)
24 PRK11171 hypothetical protein; 97.4 0.0016 3.4E-08 55.5 10.0 60 95-156 185-247 (266)
25 PRK04190 glucose-6-phosphate i 97.4 0.0012 2.6E-08 54.4 8.7 61 94-154 68-142 (191)
26 PRK15460 cpsB mannose-1-phosph 97.3 0.00044 9.5E-09 63.8 6.5 61 94-156 385-448 (478)
27 COG4297 Uncharacterized protei 97.2 0.00062 1.4E-08 54.4 5.4 51 97-148 48-101 (163)
28 PF04209 HgmA: homogentisate 1 97.2 0.0018 4E-08 59.2 8.9 87 74-163 105-194 (424)
29 PF12973 Cupin_7: ChrR Cupin-l 97.2 0.0089 1.9E-07 42.6 10.6 74 79-158 7-84 (91)
30 PF01050 MannoseP_isomer: Mann 97.0 0.0043 9.4E-08 49.2 8.4 60 94-155 63-125 (151)
31 PF06052 3-HAO: 3-hydroxyanthr 96.9 0.0047 1E-07 49.5 7.3 60 91-150 31-93 (151)
32 PRK10371 DNA-binding transcrip 96.9 0.0028 6E-08 54.3 6.5 63 94-159 28-91 (302)
33 PRK10296 DNA-binding transcrip 96.9 0.0052 1.1E-07 51.0 8.0 46 105-152 35-81 (278)
34 TIGR03214 ura-cupin putative a 96.9 0.0075 1.6E-07 51.3 8.9 61 94-156 179-242 (260)
35 PF12852 Cupin_6: Cupin 96.8 0.0022 4.8E-08 50.7 5.2 40 113-152 36-75 (186)
36 PF03079 ARD: ARD/ARD' family; 96.7 0.0053 1.2E-07 49.1 6.5 47 110-156 90-139 (157)
37 PRK13500 transcriptional activ 96.6 0.0054 1.2E-07 52.5 6.4 51 106-158 61-112 (312)
38 PRK05341 homogentisate 1,2-dio 96.6 0.012 2.6E-07 54.1 9.0 69 94-164 133-204 (438)
39 PRK13502 transcriptional activ 96.5 0.0063 1.4E-07 50.5 6.0 50 106-157 31-81 (282)
40 PLN02658 homogentisate 1,2-dio 96.5 0.017 3.7E-07 53.1 9.0 70 93-164 125-197 (435)
41 PF11699 CENP-C_C: Mif2/CENP-C 96.5 0.015 3.3E-07 42.2 7.0 59 93-153 11-72 (85)
42 TIGR02297 HpaA 4-hydroxyphenyl 96.4 0.0074 1.6E-07 50.0 5.8 50 106-157 36-87 (287)
43 TIGR01015 hmgA homogentisate 1 96.3 0.019 4.1E-07 52.7 8.1 64 94-159 127-193 (429)
44 PRK13501 transcriptional activ 96.2 0.012 2.7E-07 49.3 6.0 44 111-156 37-80 (290)
45 PRK13503 transcriptional activ 96.1 0.0089 1.9E-07 49.2 4.7 49 106-156 28-77 (278)
46 COG2140 Thermophilic glucose-6 96.0 0.021 4.6E-07 48.0 6.5 54 97-150 83-144 (209)
47 COG3123 Uncharacterized protei 95.9 0.079 1.7E-06 39.1 8.4 62 94-157 25-86 (94)
48 PLN00212 glutelin; Provisional 95.7 0.031 6.8E-07 52.1 6.7 52 99-150 353-411 (493)
49 COG3257 GlxB Uncharacterized p 95.4 0.064 1.4E-06 46.0 7.0 40 112-153 83-122 (264)
50 TIGR02272 gentisate_1_2 gentis 95.2 0.062 1.3E-06 47.9 6.8 46 110-157 268-313 (335)
51 TIGR02451 anti_sig_ChrR anti-s 95.0 0.076 1.6E-06 44.1 6.3 58 93-156 126-185 (215)
52 PLN00212 glutelin; Provisional 94.7 0.14 3.1E-06 47.8 8.1 66 99-164 85-182 (493)
53 TIGR00218 manA mannose-6-phosp 94.7 0.3 6.4E-06 42.2 9.5 61 94-156 235-296 (302)
54 PLN02288 mannose-6-phosphate i 94.7 0.15 3.3E-06 46.3 8.0 66 87-152 326-394 (394)
55 KOG2107 Uncharacterized conser 94.6 0.088 1.9E-06 43.1 5.6 46 111-156 92-140 (179)
56 COG4101 Predicted mannose-6-ph 94.6 0.079 1.7E-06 41.6 5.1 51 99-149 51-105 (142)
57 PRK10572 DNA-binding transcrip 94.2 0.13 2.8E-06 43.0 5.9 43 110-154 47-89 (290)
58 COG3508 HmgA Homogentisate 1,2 93.8 0.24 5.1E-06 45.1 7.1 67 94-162 125-194 (427)
59 PRK15131 mannose-6-phosphate i 93.7 0.6 1.3E-05 42.2 9.7 54 94-149 321-374 (389)
60 PF06560 GPI: Glucose-6-phosph 93.7 0.12 2.7E-06 42.4 4.9 53 99-151 66-129 (182)
61 PF06339 Ectoine_synth: Ectoin 93.4 1.7 3.8E-05 34.0 10.4 58 106-164 48-107 (126)
62 PRK09685 DNA-binding transcrip 93.1 0.88 1.9E-05 38.0 9.2 67 92-160 43-117 (302)
63 PF11142 DUF2917: Protein of u 92.4 0.73 1.6E-05 31.5 6.3 55 99-153 2-57 (63)
64 COG1791 Uncharacterized conser 92.0 0.48 1E-05 39.1 5.9 47 110-156 93-142 (181)
65 KOG2757 Mannose-6-phosphate is 90.3 0.66 1.4E-05 42.4 5.6 52 111-163 352-403 (411)
66 PF14525 AraC_binding_2: AraC- 90.2 1.2 2.6E-05 33.2 6.3 46 115-162 58-103 (172)
67 PF04622 ERG2_Sigma1R: ERG2 an 89.9 0.87 1.9E-05 38.4 5.8 59 98-156 103-163 (216)
68 TIGR02272 gentisate_1_2 gentis 89.3 0.65 1.4E-05 41.5 4.8 57 96-153 83-141 (335)
69 PF05523 FdtA: WxcM-like, C-te 89.2 1.9 4.2E-05 33.0 6.9 48 106-153 48-98 (131)
70 PRK15186 AraC family transcrip 88.6 1.3 2.8E-05 38.5 6.1 57 99-156 24-81 (291)
71 PF02678 Pirin: Pirin; InterP 86.6 2.9 6.3E-05 31.4 6.2 50 103-154 39-90 (107)
72 COG1482 ManA Phosphomannose is 86.2 6.2 0.00013 35.1 9.0 56 89-147 237-293 (312)
73 PF05726 Pirin_C: Pirin C-term 85.1 6.5 0.00014 28.6 7.4 46 110-159 18-64 (104)
74 PF06719 AraC_N: AraC-type tra 83.8 4.5 9.9E-05 31.5 6.4 45 111-157 22-66 (155)
75 PF02041 Auxin_BP: Auxin bindi 83.1 3.4 7.3E-05 33.7 5.5 56 100-155 50-115 (167)
76 PF13621 Cupin_8: Cupin-like d 81.5 1.1 2.5E-05 35.7 2.3 60 95-155 132-232 (251)
77 PF14499 DUF4437: Domain of un 80.3 3.5 7.6E-05 35.5 5.0 36 110-147 54-90 (251)
78 PRK00924 5-keto-4-deoxyuronate 78.3 6.8 0.00015 34.3 6.2 52 110-163 71-126 (276)
79 PF04962 KduI: KduI/IolB famil 77.0 7.8 0.00017 33.3 6.1 64 98-163 31-104 (261)
80 COG3435 Gentisate 1,2-dioxygen 76.9 3.5 7.6E-05 37.0 4.0 41 111-153 280-320 (351)
81 PF08007 Cupin_4: Cupin superf 76.5 25 0.00053 30.6 9.2 63 94-156 114-200 (319)
82 KOG0501 K+-channel KCNQ [Inorg 75.5 4.7 0.0001 39.4 4.8 44 98-142 573-618 (971)
83 COG3435 Gentisate 1,2-dioxygen 74.1 4.2 9E-05 36.5 3.8 52 96-148 94-147 (351)
84 TIGR00686 phnA alkylphosphonat 72.9 3.6 7.7E-05 31.5 2.7 60 79-149 5-64 (109)
85 PF00027 cNMP_binding: Cyclic 72.8 9.2 0.0002 25.0 4.5 32 111-142 16-51 (91)
86 KOG3995 3-hydroxyanthranilate 72.1 8.1 0.00017 33.3 4.9 83 64-149 6-92 (279)
87 COG3718 IolB Uncharacterized e 71.2 19 0.00041 31.4 7.0 59 96-155 31-100 (270)
88 PRK15044 transcriptional regul 71.1 10 0.00022 33.5 5.5 44 111-155 39-82 (295)
89 PRK13918 CRP/FNR family transc 68.6 12 0.00025 29.2 4.9 33 112-144 26-62 (202)
90 COG3257 GlxB Uncharacterized p 67.6 8 0.00017 33.4 4.0 49 96-146 184-235 (264)
91 COG1741 Pirin-related protein 66.0 13 0.00028 32.4 5.1 49 102-151 52-103 (276)
92 PRK10220 hypothetical protein; 62.7 7.6 0.00017 29.8 2.7 60 79-149 6-65 (111)
93 PRK11396 hypothetical protein; 62.1 46 0.001 27.7 7.4 45 111-156 54-99 (191)
94 PF05962 HutD: HutD; InterPro 60.5 43 0.00093 27.1 6.9 50 111-160 53-104 (184)
95 PF05962 HutD: HutD; InterPro 60.2 8.7 0.00019 31.1 2.8 39 110-150 133-171 (184)
96 PF02408 CUB_2: CUB-like domai 59.9 9.2 0.0002 28.5 2.7 19 139-157 33-51 (120)
97 PRK15185 transcriptional regul 59.8 22 0.00048 31.6 5.4 42 111-154 48-89 (309)
98 KOG1417 Homogentisate 1,2-diox 58.2 77 0.0017 28.8 8.5 65 93-159 133-200 (446)
99 PRK11753 DNA-binding transcrip 57.0 25 0.00053 27.4 4.8 34 111-144 37-74 (211)
100 PF09313 DUF1971: Domain of un 54.7 35 0.00076 24.5 4.9 40 114-153 27-71 (82)
101 PF02373 JmjC: JmjC domain, hy 52.8 12 0.00027 26.4 2.3 17 133-149 82-98 (114)
102 smart00100 cNMP Cyclic nucleot 52.7 32 0.00069 22.8 4.3 35 111-145 34-72 (120)
103 TIGR03697 NtcA_cyano global ni 52.7 29 0.00062 26.6 4.5 33 111-143 10-46 (193)
104 PRK09391 fixK transcriptional 52.0 69 0.0015 25.9 6.9 47 101-147 43-95 (230)
105 COG3712 FecR Fe2+-dicitrate se 51.9 64 0.0014 28.9 7.0 41 104-145 185-228 (322)
106 PRK10402 DNA-binding transcrip 51.4 30 0.00066 27.8 4.6 46 100-145 35-86 (226)
107 KOG3416 Predicted nucleic acid 50.4 17 0.00037 28.7 2.8 50 103-153 26-79 (134)
108 PRK05467 Fe(II)-dependent oxyg 49.1 21 0.00046 30.1 3.5 35 121-158 130-164 (226)
109 COG3128 PiuC Uncharacterized i 48.8 19 0.00041 30.6 3.0 28 120-147 132-159 (229)
110 cd00038 CAP_ED effector domain 48.3 29 0.00063 23.0 3.5 34 111-144 34-71 (115)
111 PF02080 TrkA_C: TrkA-C domain 44.9 37 0.0008 22.0 3.5 29 113-144 28-56 (71)
112 PF02237 BPL_C: Biotin protein 44.7 36 0.00078 21.5 3.3 23 120-143 25-47 (48)
113 PRK09774 fec operon regulator 41.2 94 0.002 26.9 6.4 43 105-147 183-227 (319)
114 KOG0500 Cyclic nucleotide-gate 40.8 46 0.001 31.8 4.6 31 112-142 348-379 (536)
115 PF13759 2OG-FeII_Oxy_5: Putat 40.6 23 0.0005 25.2 2.1 19 133-151 67-85 (101)
116 PF04962 KduI: KduI/IolB famil 40.2 41 0.0009 28.9 3.9 94 43-149 107-227 (261)
117 PLN02868 acyl-CoA thioesterase 39.7 53 0.0011 29.4 4.7 46 99-144 34-84 (413)
118 PRK09978 DNA-binding transcrip 38.0 61 0.0013 28.1 4.7 37 116-156 10-46 (274)
119 cd06919 Asp_decarbox Aspartate 38.0 24 0.00051 27.1 1.9 29 116-145 56-87 (111)
120 PRK11161 fumarate/nitrate redu 37.0 68 0.0015 25.5 4.5 34 111-144 54-91 (235)
121 PHA02872 EFc gene family prote 36.6 39 0.00085 26.2 2.9 44 111-154 59-110 (124)
122 PF07385 DUF1498: Protein of u 36.0 50 0.0011 28.3 3.7 39 114-154 138-176 (225)
123 COG3097 Uncharacterized protei 34.7 21 0.00045 27.0 1.1 38 117-155 15-56 (106)
124 TIGR00218 manA mannose-6-phosp 33.5 25 0.00053 30.3 1.5 19 133-151 152-170 (302)
125 PF01356 A_amylase_inhib: Alph 33.4 82 0.0018 22.2 3.8 25 123-148 29-55 (68)
126 PRK00364 groES co-chaperonin G 33.3 44 0.00095 24.4 2.6 14 133-146 56-69 (95)
127 TIGR00223 panD L-aspartate-alp 33.2 30 0.00065 27.1 1.8 29 116-145 57-88 (126)
128 PRK05449 aspartate alpha-decar 33.1 31 0.00067 27.1 1.8 29 116-145 57-88 (126)
129 PF14499 DUF4437: Domain of un 32.5 78 0.0017 27.3 4.4 62 87-148 162-227 (251)
130 cd00320 cpn10 Chaperonin 10 Kd 29.8 1.2E+02 0.0025 22.0 4.3 16 133-148 55-70 (93)
131 COG1482 ManA Phosphomannose is 28.5 42 0.00091 29.9 2.1 19 133-151 159-177 (312)
132 KOG0498 K+-channel ERG and rel 28.5 1.1E+02 0.0024 30.4 5.1 43 101-143 447-494 (727)
133 PF07385 DUF1498: Protein of u 28.2 1.5E+02 0.0032 25.5 5.3 32 120-153 136-167 (225)
134 PHA00672 hypothetical protein 27.0 1.4E+02 0.0029 23.9 4.5 38 114-153 68-105 (152)
135 smart00783 A_amylase_inhib Alp 27.0 1E+02 0.0023 21.7 3.5 17 132-149 41-57 (69)
136 PF09224 DUF1961: Domain of un 26.4 53 0.0012 28.0 2.3 43 112-156 15-72 (218)
137 PRK15131 mannose-6-phosphate i 26.0 53 0.0011 29.8 2.4 19 133-151 238-256 (389)
138 PTZ00414 10 kDa heat shock pro 26.0 97 0.0021 23.2 3.4 28 120-147 46-74 (100)
139 COG3758 Uncharacterized protei 25.9 1.2E+02 0.0025 25.5 4.2 44 111-154 59-103 (193)
140 PHA00663 hypothetical protein 25.9 62 0.0014 22.5 2.2 19 138-156 17-35 (68)
141 PRK09392 ftrB transcriptional 25.8 1.2E+02 0.0026 24.2 4.2 33 111-143 47-82 (236)
142 PRK04980 hypothetical protein; 25.4 32 0.00069 25.9 0.7 28 117-145 14-41 (102)
143 TIGR02219 phage_NlpC_fam putat 24.6 37 0.00081 25.8 1.0 11 135-145 76-86 (134)
144 PRK14533 groES co-chaperonin G 24.3 2.6E+02 0.0057 20.3 5.4 27 120-146 37-64 (91)
145 COG2501 S4-like RNA binding pr 23.8 35 0.00075 24.3 0.6 31 116-146 32-63 (73)
146 COG3718 IolB Uncharacterized e 23.5 90 0.0019 27.3 3.2 26 124-149 203-230 (270)
147 KOG3706 Uncharacterized conser 23.4 44 0.00096 32.1 1.4 58 98-156 321-405 (629)
148 PRK10838 spr outer membrane li 23.2 41 0.00089 27.7 1.1 14 134-147 127-140 (190)
149 KOG1113 cAMP-dependent protein 22.5 53 0.0012 30.0 1.7 32 111-142 280-311 (368)
150 PF02261 Asp_decarbox: Asparta 22.3 21 0.00046 27.6 -0.7 29 116-145 57-88 (116)
151 COG4579 Isocitrate dehydrogena 22.1 48 0.001 31.2 1.4 40 109-150 473-520 (578)
152 KOG4143 Sigma receptor and C-8 21.6 65 0.0014 27.0 1.9 44 112-155 120-163 (218)
153 PLN03192 Voltage-dependent pot 20.8 1.4E+02 0.0031 29.1 4.4 42 101-142 402-448 (823)
154 PRK02946 aceK bifunctional iso 20.4 40 0.00087 32.5 0.5 34 109-142 474-515 (575)
No 1
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=202.59 Aligned_cols=89 Identities=40% Similarity=0.661 Sum_probs=86.5
Q ss_pred ccCCCCeeecccccccccc-eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 75 HTGGQPRVLPSKKTHLEAI-WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 75 ~~~G~P~~~~~~~~~~~~~-~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
.++|+|+...++++..+|+ ..+|+|+|+||+|++.|+.+|+||||+|+++||+|+| ++++++|||+++||+|++|+|+
T Consensus 25 ~i~G~p~~~t~~~~~~~dg~~~~GiWe~TpG~~r~~y~~~E~chil~G~v~~T~d~G-e~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 25 LILGDPSAATWNLYGAPDGQVETGIWECTPGKFRVTYDEDEFCHILEGRVEVTPDGG-EPVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred cccCCccceehheeeCCCCCeeEeEEEecCccceEEcccceEEEEEeeEEEEECCCC-eEEEEcCCCEEEECCCCeEEEE
Confidence 4999999999999999987 8999999999999999999999999999999999999 7999999999999999999999
Q ss_pred EceeeEEEEEe
Q 031109 154 VSVGVDKHYKF 164 (165)
Q Consensus 154 V~e~vrK~Y~~ 164 (165)
|.+++||||+|
T Consensus 104 V~EtvrK~Yv~ 114 (116)
T COG3450 104 VLETVRKHYVI 114 (116)
T ss_pred EeeeeEEEEEE
Confidence 99999999987
No 2
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=99.93 E-value=2.5e-25 Score=156.10 Aligned_cols=71 Identities=39% Similarity=0.787 Sum_probs=67.1
Q ss_pred ccc-eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEE
Q 031109 91 EAI-WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHY 162 (165)
Q Consensus 91 ~~~-~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y 162 (165)
+++ +.+|+|+|+|++|+++|+.+|+||||||+++|++++| ++++|+|||+|+||+|++++|++.+++||+|
T Consensus 3 ~~g~~~~g~w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G-~~~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y 74 (74)
T PF05899_consen 3 PDGVFSAGVWECTPGKFPWPYPEDEFFYVLEGEVTITDEDG-ETVTFKAGDAFFLPKGWTGTWEVREPVRKVY 74 (74)
T ss_dssp CCTSEEEEEEEEECEEEEEEESSEEEEEEEEEEEEEEETTT-EEEEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCceeEeeCCCCEEEEEEEeEEEEEECCC-CEEEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence 455 7899999999999999999999999999999999999 6999999999999999999999999999999
No 3
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=99.48 E-value=2.5e-13 Score=108.18 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=69.5
Q ss_pred ccCCCCeeeccc--ccccccc--eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEE
Q 031109 75 HTGGQPRVLPSK--KTHLEAI--WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 75 ~~~G~P~~~~~~--~~~~~~~--~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~ 150 (165)
...|+|...... .+..+++ ..+|+.+.+.+.|+|+|++||+.|||||+++|+.+| +.++.+|||+++||||.++
T Consensus 54 ~dtg~p~~~~~~~dv~~~~e~~~l~~Gf~~le~~~f~wtl~YDEi~~VlEG~L~i~~~G--~~~~A~~GDvi~iPkGs~I 131 (152)
T PF06249_consen 54 FDTGNPGDKVYIKDVFSSDESPRLSAGFMELEKTSFPWTLTYDEIKYVLEGTLEISIDG--QTVTAKPGDVIFIPKGSTI 131 (152)
T ss_dssp -GGGTTS--EEE-EEE-GGGT-SSEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEETT--EEEEEETT-EEEE-TT-EE
T ss_pred ccCCCCCccEEEEEeccCCCCCceeeEEEEEeCCCccEEeecceEEEEEEeEEEEEECC--EEEEEcCCcEEEECCCCEE
Confidence 455777765544 5555444 689999998999999999999999999999999774 4899999999999999999
Q ss_pred EEEEceeeEEEEEe
Q 031109 151 TWDVSVGVDKHYKF 164 (165)
Q Consensus 151 tW~V~e~vrK~Y~~ 164 (165)
+|......|-+|+.
T Consensus 132 ~fst~~~a~~~Yv~ 145 (152)
T PF06249_consen 132 TFSTPDYARFFYVT 145 (152)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred EEecCCCEEEEEEE
Confidence 99999999999974
No 4
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=104.41 Aligned_cols=88 Identities=30% Similarity=0.420 Sum_probs=77.5
Q ss_pred ccCCCCeeecccccccc-cc--eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEE
Q 031109 75 HTGGQPRVLPSKKTHLE-AI--WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 75 ~~~G~P~~~~~~~~~~~-~~--~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~t 151 (165)
...|+|++.......++ ++ ..+|+-+-.+..|+|+..+||+.|||||++.|..+|+ .+..+|||++++|||.+++
T Consensus 78 ~d~gqp~~V~~tdLvt~~~g~~l~aG~m~~~~~tf~wtl~yDe~d~VlEGrL~V~~~g~--tv~a~aGDvifiPKgssIe 155 (176)
T COG4766 78 FDTGQPDCVYTTDLVTEQEGSRLGAGLMEMKNTTFPWTLNYDEIDYVLEGRLHVRIDGR--TVIAGAGDVIFIPKGSSIE 155 (176)
T ss_pred ecCCCCCeEEeeceeecccCCccccceeeeccccCcceecccceeEEEeeeEEEEEcCC--eEecCCCcEEEecCCCeEE
Confidence 45689988887755444 34 5689999999999999999999999999999999997 7999999999999999999
Q ss_pred EEEceeeEEEEEe
Q 031109 152 WDVSVGVDKHYKF 164 (165)
Q Consensus 152 W~V~e~vrK~Y~~ 164 (165)
..+...+|-.|+.
T Consensus 156 fst~gea~flyvt 168 (176)
T COG4766 156 FSTTGEAKFLYVT 168 (176)
T ss_pred EeccceEEEEEEE
Confidence 9999999999873
No 5
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=99.30 E-value=1.6e-11 Score=103.56 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCCCeeeccc-ccccccc--eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 77 GGQPRVLPSK-KTHLEAI--WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 77 ~G~P~~~~~~-~~~~~~~--~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
+|+|...... .|..+++ ..+|+...+...|+|+|+++|+.|||||+++++.+| +.+.++|||.++||+|..++|.
T Consensus 137 g~~~~~v~~~d~~~~~d~s~m~aGf~~~~~~sf~wtl~~dEi~YVLEGe~~l~IdG--~t~~l~pGDvlfIPkGs~~hf~ 214 (233)
T PRK15457 137 GAEPHCVGLTDLVTGDDGSSMAAGFMQWENAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFG 214 (233)
T ss_pred CCCcccEEeeeeeccCCCCceeeEEEEEecCccceeccceEEEEEEEeEEEEEECC--EEEEeCCCcEEEECCCCeEEec
Confidence 5555543333 5566555 678988888899999999999999999999999975 4899999999999999999998
Q ss_pred EceeeEEEEEe
Q 031109 154 VSVGVDKHYKF 164 (165)
Q Consensus 154 V~e~vrK~Y~~ 164 (165)
.....|-+|++
T Consensus 215 tp~~aRflyV~ 225 (233)
T PRK15457 215 TPSSVRFLYVA 225 (233)
T ss_pred CCCCeeEEEEE
Confidence 87788888864
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.60 E-value=6.3e-07 Score=59.68 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=48.0
Q ss_pred EEEecCCcee-eeeC-CC-ceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 97 LRWGCPPSKF-PWTY-SD-KETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 97 GiWe~~pg~f-~w~y-~~-dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
|+|..+|+.. ++|. +. +|+.|||+|+++++.+| +.+++++||++.+|+|....+.-...
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~ 62 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG--ERVELKPGDAIYIPPGVPHQVRNPGD 62 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEEETT--EEEEEETTEEEEEETTSEEEEEEESS
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc--EEeEccCCEEEEECCCCeEEEEECCC
Confidence 5678888873 4543 33 49999999999999665 48999999999999999998877663
No 7
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.41 E-value=3.2e-07 Score=73.71 Aligned_cols=53 Identities=26% Similarity=0.450 Sum_probs=43.6
Q ss_pred EEecCCce----eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEE
Q 031109 98 RWGCPPSK----FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTW 152 (165)
Q Consensus 98 iWe~~pg~----f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW 152 (165)
+=..+||. +.||-.+||++|||||+.++..+++ .+.++|||.+-||+|-...-
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFpAG~~~aH 102 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFPAGVGNAH 102 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEECCe--eEEecCCceeeccCCCccee
Confidence 44455555 4678889999999999999999998 59999999999999954333
No 8
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.34 E-value=8.9e-06 Score=62.51 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=51.8
Q ss_pred eeEEEecCCce-eeeeC-CCceEEEEEEcEEEEE-eCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEEE
Q 031109 95 RILRWGCPPSK-FPWTY-SDKETCYLLEGKVKVY-PDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHYK 163 (165)
Q Consensus 95 ~~GiWe~~pg~-f~w~y-~~dE~~yVLEG~vtVt-~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y~ 163 (165)
.+=.+.-.|+. .+.|+ ...|++|||+|+++++ .+++ +.+.++|||.++||++....|.-.++++-..+
T Consensus 36 ~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 36 SFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATG-EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCC-EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE
Confidence 33346667774 33343 3479999999999999 5556 58999999999999999999998776655443
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.1e-06 Score=66.77 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 102 PPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 102 ~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
+...++.|+..+|++|||+|+.+|+.+|. .+.+++||++++|+|....-+-...
T Consensus 47 ~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~--~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 47 EEISLHHHHHRDEHWYVLEGTGKVTIGGE--EVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred cccCcccccCcceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCC
Confidence 33345667779999999999999999964 8999999999999999877665554
No 10
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.30 E-value=2.2e-06 Score=68.89 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=52.2
Q ss_pred cccccccceeeEEEecCCceeeeeC-CCceEEEEEEcEEEEEeCCC--ceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 86 KKTHLEAIWRILRWGCPPSKFPWTY-SDKETCYLLEGKVKVYPDGS--NEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 86 ~~~~~~~~~~~GiWe~~pg~f~w~y-~~dE~~yVLEG~vtVt~dgG--~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
..|.+ ..+.+.+...+-.+++||. +.+|++|+|+|++.|...++ -+.+++++||++++|+|....|.-
T Consensus 22 ~l~~~-~~~~v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 22 QIWQD-SEFMVTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred EeecC-CcEEEEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc
Confidence 34432 3577777766656688987 57999999999999965442 137999999999999999888754
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.24 E-value=3.1e-06 Score=69.15 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=52.8
Q ss_pred ecccccccccceeeEEEecCCc-eeeeeC-CCceEEEEEEcEEEEEeCCCc--eeEEEcCCcEEEEcCCCEEEEEE
Q 031109 83 LPSKKTHLEAIWRILRWGCPPS-KFPWTY-SDKETCYLLEGKVKVYPDGSN--EGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 83 ~~~~~~~~~~~~~~GiWe~~pg-~f~w~y-~~dE~~yVLEG~vtVt~dgG~--e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
.+...|.+ +++.+-+.. .|+ ++.||+ +.+|++|+|+|+++|...+++ +.+++++||++++|+|....+.-
T Consensus 25 ~n~~l~~~-~d~~Vmvvg-Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 25 GNKQIWQD-SDFIVMVVG-GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred CCeeeEcC-CCEEEEEEc-cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc
Confidence 34445544 356666654 455 688887 579999999999999984321 47999999999999999888754
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.13 E-value=1.9e-05 Score=59.49 Aligned_cols=62 Identities=26% Similarity=0.494 Sum_probs=52.0
Q ss_pred eeeEEEecCCce-eeeeC-C-CceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 94 WRILRWGCPPSK-FPWTY-S-DKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 94 ~~~GiWe~~pg~-f~w~y-~-~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
..+..+.-.|+. .+||+ + .+++.|||+|+++++.+ | +..++++||.+++|+|...-+.-.+.
T Consensus 43 ~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g-~~~~l~~Gd~i~ip~g~~H~~~a~~~ 107 (131)
T COG1917 43 LSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-G-EKKELKAGDVIIIPPGVVHGLKAVED 107 (131)
T ss_pred EEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-C-CceEecCCCEEEECCCCeeeeccCCC
Confidence 556788888888 46775 4 68999999999999999 5 58999999999999999888765443
No 13
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=97.94 E-value=3.1e-05 Score=61.82 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred EEecCCcee---eeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 98 RWGCPPSKF---PWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 98 iWe~~pg~f---~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
++.-.|+.- .++.+.+|++|||+|+++|+.++ +.+++++||.+.||.+....|....
T Consensus 111 ~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~~~~~~H~~~n~~ 170 (185)
T PRK09943 111 FETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING--QDYHLVAGQSYAINTGIPHSFSNTS 170 (185)
T ss_pred EEEccCCCCcccccccCCcEEEEEEEeEEEEEECC--EEEEecCCCEEEEcCCCCeeeeCCC
Confidence 344455552 22346799999999999999976 4899999999999999999999864
No 14
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=97.92 E-value=8.4e-05 Score=57.05 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=47.7
Q ss_pred eEEEecCCcee---eeeCCCceEEEEEEcEEEEEe--CCC------ceeEE--EcCCcEEEEcCCCEEEEEEc--eeeEE
Q 031109 96 ILRWGCPPSKF---PWTYSDKETCYLLEGKVKVYP--DGS------NEGVE--IGAGDLVVFPKGMSCTWDVS--VGVDK 160 (165)
Q Consensus 96 ~GiWe~~pg~f---~w~y~~dE~~yVLEG~vtVt~--dgG------~e~v~--i~AGDlv~fPkG~~~tW~V~--e~vrK 160 (165)
+.+=..+|+.+ .|| +.+|++||++|++++.. .++ ..... +++||+++||+|+...+.-. +....
T Consensus 36 ~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~ 114 (144)
T PF00190_consen 36 VRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALV 114 (144)
T ss_dssp EEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEE
T ss_pred EEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEE
Confidence 34445577775 367 89999999999999543 222 12344 99999999999999999988 46666
Q ss_pred EEEe
Q 031109 161 HYKF 164 (165)
Q Consensus 161 ~Y~~ 164 (165)
++.|
T Consensus 115 ~~~f 118 (144)
T PF00190_consen 115 LIIF 118 (144)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 15
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=97.89 E-value=0.00012 Score=56.28 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=49.1
Q ss_pred eeeEEEecCCcee-eeeC--CCceEEEEEEcEEEEEeCCC--ce--eEEEcCCcEEEEcCCCEEEEEEc
Q 031109 94 WRILRWGCPPSKF-PWTY--SDKETCYLLEGKVKVYPDGS--NE--GVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 94 ~~~GiWe~~pg~f-~w~y--~~dE~~yVLEG~vtVt~dgG--~e--~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
..+..+..+|+.. +.|+ ..+|++|||+|+.++...+. ++ ..++++||++.||+|....+.-.
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~ 98 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNS 98 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcC
Confidence 5677788888774 3454 46899999999999987543 11 68899999999999998877664
No 16
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.86 E-value=0.0001 Score=52.81 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=41.6
Q ss_pred ceeeee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce--eeEEEE
Q 031109 104 SKFPWT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV--GVDKHY 162 (165)
Q Consensus 104 g~f~w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e--~vrK~Y 162 (165)
..+++| .+.-|++||++|+.++..++. .+.+++||++++|+|....+.... +....+
T Consensus 14 ~~~~~h~h~~~~i~~v~~G~~~~~~~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~ 73 (136)
T PF02311_consen 14 FEFPPHWHDFYEIIYVLSGEGTLHIDGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW 73 (136)
T ss_dssp -SEEEETT-SEEEEEEEEE-EEEEETTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred CccCCEECCCEEEEEEeCCEEEEEECCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence 345666 478999999999999999885 799999999999999999999988 555444
No 17
>PRK11171 hypothetical protein; Provisional
Probab=97.76 E-value=0.00027 Score=60.23 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=48.4
Q ss_pred eeeEEEecCCcee---eeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc
Q 031109 94 WRILRWGCPPSKF---PWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 94 ~~~GiWe~~pg~f---~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
+..-+++..|+.- +.+. ..+|++|||+|+++|+.++ +.+.+.+||.+.||+|....|.-.
T Consensus 61 ~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g--~~~~L~~GDsi~~p~~~~H~~~N~ 124 (266)
T PRK11171 61 FSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEG--KTHALSEGGYAYLPPGSDWTLRNA 124 (266)
T ss_pred EEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEEC
Confidence 5566788888653 2232 4589999999999999976 479999999999999999999753
No 18
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.75 E-value=0.00022 Score=63.66 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=50.9
Q ss_pred eeeEEEecCCcee---eeeCCCceEEEEEEcEEEEEeCC---CceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 94 WRILRWGCPPSKF---PWTYSDKETCYLLEGKVKVYPDG---SNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 94 ~~~GiWe~~pg~f---~w~y~~dE~~yVLEG~vtVt~dg---G~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
..++...-.||.. +||-..+|+.|||+|+++++..+ ..+...+++||+++||+|.....+-.+
T Consensus 245 ~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G 313 (367)
T TIGR03404 245 IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTG 313 (367)
T ss_pred EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECC
Confidence 4567888889885 46666899999999999998642 225788999999999999999887654
No 19
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.69 E-value=0.00021 Score=65.22 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=51.9
Q ss_pred ceeeEEEecCCcee---eeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 93 IWRILRWGCPPSKF---PWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 93 ~~~~GiWe~~pg~f---~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
...+-...-.|+.. ++|...+|++|||+|+++++.+|. .+.+++||.++||+|....|.-..
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--~~~l~~GDsi~ip~~~~H~~~N~g 439 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--TLLLTENESTYIPLGVIHRLENPG 439 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCC
Confidence 36667788888873 345567899999999999999874 799999999999999999998654
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.59 E-value=0.00064 Score=57.78 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred eeeEEEecCCcee---ee-eCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc
Q 031109 94 WRILRWGCPPSKF---PW-TYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 94 ~~~GiWe~~pg~f---~w-~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
+..-+++-.|+.- +. +-..+|++|||+|+++|+.++. .+++++||.+.||+|...+|.-.
T Consensus 58 f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--~~~L~~Gd~~y~pa~~~H~~~N~ 121 (260)
T TIGR03214 58 FVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--THELREGGYAYLPPGSKWTLANA 121 (260)
T ss_pred EEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEEC
Confidence 3445677777542 22 2234899999999999998764 79999999999999999988543
No 21
>PRK10579 hypothetical protein; Provisional
Probab=97.57 E-value=0.00054 Score=50.95 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=53.9
Q ss_pred eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceee
Q 031109 94 WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGV 158 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~v 158 (165)
-++|+-. ||.+.+.....|++-|+.|+++|...|..+-.++.||+.|.+|++.+-.-+|.+.+
T Consensus 25 kTlGVm~--pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t 87 (94)
T PRK10579 25 ASVGVMA--EGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPT 87 (94)
T ss_pred eEEEEEe--eeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcce
Confidence 5677754 56777778899999999999999999986678999999999999999888887654
No 22
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=97.56 E-value=0.00048 Score=51.23 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=49.0
Q ss_pred eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceee
Q 031109 94 WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGV 158 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~v 158 (165)
.++|+- .||.|.+.....|++-|++|+++|...|..+-.++.||+.|.+|++.+-.-++.+.+
T Consensus 25 ~TlGVm--~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~ 87 (94)
T PF06865_consen 25 KTLGVM--LPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPT 87 (94)
T ss_dssp EEEEEE---SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-E
T ss_pred ceEEEE--eeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcce
Confidence 567875 467787778899999999999999999886678999999999999999888887754
No 23
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.42 E-value=0.00038 Score=62.12 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=40.3
Q ss_pred eeeeCCCceEEEEEEcEEEEEeCC--CceeE--EEcCCcEEEEcCCCEEEEEEce
Q 031109 106 FPWTYSDKETCYLLEGKVKVYPDG--SNEGV--EIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 106 f~w~y~~dE~~yVLEG~vtVt~dg--G~e~v--~i~AGDlv~fPkG~~~tW~V~e 156 (165)
..|| ...|+.|||+|+++++..+ | +.+ .+++||+++||+|+...+...+
T Consensus 82 ~HwH-~~~E~~yVl~G~~~v~~~d~~g-~~~~~~L~~GD~~~fP~g~~H~~~n~~ 134 (367)
T TIGR03404 82 LHWH-KEAEWAYVLYGSCRITAVDENG-RNYIDDVGAGDLWYFPPGIPHSLQGLD 134 (367)
T ss_pred cccC-CCceEEEEEeeEEEEEEEcCCC-cEEEeEECCCCEEEECCCCeEEEEECC
Confidence 4566 5689999999999999853 4 355 5999999999999999888754
No 24
>PRK11171 hypothetical protein; Provisional
Probab=97.40 E-value=0.0016 Score=55.52 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=49.8
Q ss_pred eeEEEecCCce-eee--eCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 95 RILRWGCPPSK-FPW--TYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 95 ~~GiWe~~pg~-f~w--~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
.+-.++-.|+. +++ +-...|..|||+|+++++.++ +.++++|||.+.||.+....+.-..
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~--~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN--DWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCCEEEECCC
Confidence 56678888986 444 345689999999999999876 4799999999999999999888643
No 25
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=97.38 E-value=0.0012 Score=54.38 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=46.3
Q ss_pred eeeEEEecCCcee---------eeeC--CCceEEEEEEcEEEEEeCCC---ceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 94 WRILRWGCPPSKF---------PWTY--SDKETCYLLEGKVKVYPDGS---NEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 94 ~~~GiWe~~pg~f---------~w~y--~~dE~~yVLEG~vtVt~dgG---~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
+..|+=...|++. .+|. +..|+.|||+|+..+..++. ...+.++|||+++||+|+...-.-
T Consensus 68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN 142 (191)
T PRK04190 68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVN 142 (191)
T ss_pred eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEE
Confidence 6677777777774 3453 34699999999999987643 125889999999999999875543
No 26
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.35 E-value=0.00044 Score=63.81 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=49.7
Q ss_pred eeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 94 WRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 94 ~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+.+-.-.-.||. .++|...+|+.|||+|+++|+.+|. .+.+++||.+.||+|....|.-..
T Consensus 385 ~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--~~~L~~GDSi~ip~g~~H~~~N~g 448 (478)
T PRK15460 385 YQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--IKLLGENESIYIPLGATHCLENPG 448 (478)
T ss_pred EEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCC
Confidence 444444567765 3556677899999999999999974 799999999999999999999753
No 27
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.24 E-value=0.00062 Score=54.36 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=42.3
Q ss_pred EEEecCCceee-eeCCCceEEEEEEcEEEEEeCC--CceeEEEcCCcEEEEcCCC
Q 031109 97 LRWGCPPSKFP-WTYSDKETCYLLEGKVKVYPDG--SNEGVEIGAGDLVVFPKGM 148 (165)
Q Consensus 97 GiWe~~pg~f~-w~y~~dE~~yVLEG~vtVt~dg--G~e~v~i~AGDlv~fPkG~ 148 (165)
|.|......|. ||-...|+.-+|+|++.|...| | ..+++++||.+++|+|.
T Consensus 48 gsW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G-~el~v~~GDvlliPAGv 101 (163)
T COG4297 48 GSWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADG-QELEVGEGDVLLIPAGV 101 (163)
T ss_pred ccccccccccccccCCcceEEEEecceeEEEecCCCC-ceeeecCCCEEEEecCc
Confidence 67888766554 3456899999999999998854 5 58999999999999997
No 28
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=97.22 E-value=0.0018 Score=59.22 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=57.6
Q ss_pred cccCCCCeeecccccccccceeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEE
Q 031109 74 CHTGGQPRVLPSKKTHLEAIWRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 74 ~~~~G~P~~~~~~~~~~~~~~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~ 150 (165)
+.+.|---..+...-...++..+.+|.+..+- +-..-+.||++++-+|+.+|..+=| ...+++||.++||+|.+-
T Consensus 105 dfvdgl~ti~g~gd~~~~~g~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G--~L~v~pGd~~VIPRG~~~ 182 (424)
T PF04209_consen 105 DFVDGLRTIAGAGDPLSNNGVAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFG--RLDVRPGDYVVIPRGTRF 182 (424)
T ss_dssp -TTTTEEEEEEECECCCTEEEEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTE--EEEE-TTEEEEE-TT--E
T ss_pred CccccccccccCccccccCCcEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCe--eEEEcCCeEEEECCeeEE
Confidence 44445433333333344456778899987654 2236789999999999999999998 699999999999999999
Q ss_pred EEEEceeeEEEEE
Q 031109 151 TWDVSVGVDKHYK 163 (165)
Q Consensus 151 tW~V~e~vrK~Y~ 163 (165)
.++..+++| .|+
T Consensus 183 rv~l~~p~r-gyi 194 (424)
T PF04209_consen 183 RVELPGPAR-GYI 194 (424)
T ss_dssp EEE-SSSEE-EEE
T ss_pred EEEeCCCce-EEE
Confidence 999887654 443
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.20 E-value=0.0089 Score=42.60 Aligned_cols=74 Identities=26% Similarity=0.289 Sum_probs=50.4
Q ss_pred CCeeecccccccc--cceeeEEEecCCce-eeee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 79 QPRVLPSKKTHLE--AIWRILRWGCPPSK-FPWT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 79 ~P~~~~~~~~~~~--~~~~~GiWe~~pg~-f~w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
.|.......+.++ .+..+.+=.-+|+. ++.| .+..|.+|||||++.. +++ .+.+||.+..|+|...+...
T Consensus 7 ~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~~----~~~~G~~~~~p~g~~h~~~s 80 (91)
T PF12973_consen 7 RPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GDG----RYGAGDWLRLPPGSSHTPRS 80 (91)
T ss_dssp STTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TTC----EEETTEEEEE-TTEEEEEEE
T ss_pred CCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CCc----cCCCCeEEEeCCCCccccCc
Confidence 3444444555554 34566655555665 7776 5778999999999873 333 47999999999999999987
Q ss_pred ceee
Q 031109 155 SVGV 158 (165)
Q Consensus 155 ~e~v 158 (165)
.+-.
T Consensus 81 ~~gc 84 (91)
T PF12973_consen 81 DEGC 84 (91)
T ss_dssp SSCE
T ss_pred CCCE
Confidence 7653
No 30
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.04 E-value=0.0043 Score=49.23 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=47.5
Q ss_pred eeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc
Q 031109 94 WRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 94 ~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
+.+=.=.-.||+ +..|+..+|.-+|++|++.|+.+|. ...+.+||.+.+|+|...+-.-.
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--~~~~~~g~sv~Ip~g~~H~i~n~ 125 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--EFTLKEGDSVYIPRGAKHRIENP 125 (151)
T ss_pred EEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE--EEEEcCCCEEEECCCCEEEEECC
Confidence 444334445555 4556778999999999999999874 79999999999999998877643
No 31
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.88 E-value=0.0047 Score=49.53 Aligned_cols=60 Identities=18% Similarity=0.398 Sum_probs=41.2
Q ss_pred ccceeeEEEecCCceeeeeCC-CceEEEEEEcEEEEEe--CCCceeEEEcCCcEEEEcCCCEE
Q 031109 91 EAIWRILRWGCPPSKFPWTYS-DKETCYLLEGKVKVYP--DGSNEGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 91 ~~~~~~GiWe~~pg~f~w~y~-~dE~~yVLEG~vtVt~--dgG~e~v~i~AGDlv~fPkG~~~ 150 (165)
.+++.+.++...-.+-+||++ .+|++|-++|...+.. +|+-..+.|++||++.+|++...
T Consensus 31 ~~~f~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpH 93 (151)
T PF06052_consen 31 KDDFIVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPH 93 (151)
T ss_dssp ESSEEEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--E
T ss_pred cCCeEEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCC
Confidence 346888899888777888874 6999999999877654 45445789999999999998754
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.88 E-value=0.0028 Score=54.28 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=48.1
Q ss_pred eeeEEEecCCceeeeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeE
Q 031109 94 WRILRWGCPPSKFPWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVD 159 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vr 159 (165)
..+=.|..-.. .+||+ ++-|+.|+++|.+.+..+|. .+.+.+||+++|+.|....+...+..+
T Consensus 28 ~~~~~~~~~~m-~~~HwH~e~Ei~yv~~G~~~~~i~g~--~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 28 LEIEFRPPHIM-PTSHWHGQVEVNVPFDGDVEYLINNE--KVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred eEEEeeCCCCC-CCCCccccEEEEEecCCcEEEEECCE--EEEEcCCcEEEEecCCcccccccCCCc
Confidence 44444554433 45664 57999999999999999875 799999999999999988776655544
No 33
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.88 E-value=0.0052 Score=51.02 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=38.8
Q ss_pred eeeeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEE
Q 031109 105 KFPWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTW 152 (165)
Q Consensus 105 ~f~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW 152 (165)
..++|+ +.-|+.|+++|.+++..++. .+.+.+||++++|+|.....
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEINGK--RVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEECCE--EEEECCCcEEEeCCCCccce
Confidence 345553 67999999999999999875 79999999999999987643
No 34
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.86 E-value=0.0075 Score=51.30 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=48.8
Q ss_pred eeeEEEecCCceee---eeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 94 WRILRWGCPPSKFP---WTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 94 ~~~GiWe~~pg~f~---w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
..+.+-.-.||..- .+-...|..|||+|+..+..+| +.++++|||.+++|+|..-...-..
T Consensus 179 ~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g--~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 179 MNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDN--NWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred cEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECC--EEEEecCCCEEEECCCCCEEEEecC
Confidence 56778888888843 3334567889999999998876 4899999999999999987666543
No 35
>PF12852 Cupin_6: Cupin
Probab=96.85 E-value=0.0022 Score=50.70 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=34.6
Q ss_pred ceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEE
Q 031109 113 KETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTW 152 (165)
Q Consensus 113 dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW 152 (165)
--+.+|++|++.+..+++.+++++.+||+|++|.|...+-
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEe
Confidence 5688999999999977633799999999999999987665
No 36
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=96.71 E-value=0.0053 Score=49.14 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCceEEEEEEcEEEEEeCCCce---eEEEcCCcEEEEcCCCEEEEEEce
Q 031109 110 YSDKETCYLLEGKVKVYPDGSNE---GVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG~e---~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
.+.+|+-|||+|+..+...++++ .+.+.+||++++|+|+...++..+
T Consensus 90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 46799999999998877644322 268999999999999999988776
No 37
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.63 E-value=0.0054 Score=52.50 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=43.8
Q ss_pred eeeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceee
Q 031109 106 FPWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGV 158 (165)
Q Consensus 106 f~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~v 158 (165)
+++|+ +.-|++|+++|.+++..++. .+.+.+||+++||+|....++....+
T Consensus 61 ~~~H~H~~~el~~v~~G~g~~~v~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~ 112 (312)
T PRK13500 61 FAEHTHDFCELVIVWRGNGLHVLNDR--PYRITRGDLFYIHADDKHSYASVNDL 112 (312)
T ss_pred CCccccceEEEEEEEcCeEEEEECCE--EEeecCCeEEEECCCCeecccccCCc
Confidence 55554 67899999999999999986 79999999999999999988865543
No 38
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.62 E-value=0.012 Score=54.12 Aligned_cols=69 Identities=13% Similarity=0.292 Sum_probs=55.7
Q ss_pred eeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEEEe
Q 031109 94 WRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHYKF 164 (165)
Q Consensus 94 ~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y~~ 164 (165)
..+.++.+..+- +-..-+.||++++-+|+..|..+=| ...+++||+++||+|..-.++..+.--+.|++
T Consensus 133 ~ai~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 133 MAIHLYAANRSMQDRYFYNADGELLIVPQQGRLRLATELG--VLDVEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred cEEEEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 456889987753 3345689999999999999999998 69999999999999999888875533345543
No 39
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.52 E-value=0.0063 Score=50.53 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=41.9
Q ss_pred eeeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 106 FPWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 106 f~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
+++|+ +.-|+.|+++|.++++.++. .+.+++||++++|+|....+...+.
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLNER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCccccceEEEEEEecCcEEEEECCE--EEeecCCcEEEECCCCcccccccCC
Confidence 34443 57899999999999999875 7999999999999999888876544
No 40
>PLN02658 homogentisate 1,2-dioxygenase
Probab=96.49 E-value=0.017 Score=53.09 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=56.2
Q ss_pred ceeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEEEe
Q 031109 93 IWRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHYKF 164 (165)
Q Consensus 93 ~~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y~~ 164 (165)
|..+.++.+..+- +-..-+.||++++-+|...|..+=| ...+++||+++||+|.+-..+..+.--+.|++
T Consensus 125 G~ai~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~ 197 (435)
T PLN02658 125 GYAIHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELG--KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL 197 (435)
T ss_pred CcEEEEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence 4577899997753 2345689999999999999999998 69999999999999998888775533345543
No 41
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=96.48 E-value=0.015 Score=42.21 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=43.4
Q ss_pred ceeeEEEecCCceee---eeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 93 IWRILRWGCPPSKFP---WTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 93 ~~~~GiWe~~pg~f~---w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
-+.+|+=+.+|+... -..+..-++||++|.|.|+..+. ...+.+||.+.+|+|=.-.-+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~--~f~v~~G~~F~VP~gN~Y~i~ 72 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET--SFVVTKGGSFQVPRGNYYSIK 72 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE--EEEEETT-EEEE-TT-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc--EEEEeCCCEEEECCCCEEEEE
Confidence 467899999988863 23677889999999999999875 799999999999999654443
No 42
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.42 E-value=0.0074 Score=50.03 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=41.6
Q ss_pred eeeeCC--CceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 106 FPWTYS--DKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 106 f~w~y~--~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
+++|+. .-|++|+++|.+++..++. .+.+++||++++|.|....+.....
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~~~--~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLDEH--EYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEECCE--EEEecCCeEEEeCCCCccccccCCC
Confidence 344544 4799999999999999875 7999999999999999888876554
No 43
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.29 E-value=0.019 Score=52.73 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=54.2
Q ss_pred eeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeE
Q 031109 94 WRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVD 159 (165)
Q Consensus 94 ~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vr 159 (165)
..+.++.+..+- +-..-+.||++++-+|.+.|..+=| ...+++||+++||+|..-.++..++.|
T Consensus 127 ~ai~iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~gp~r 193 (429)
T TIGR01015 127 LAIHIYLCNASMENRAFYNADGDFLIVPQQGALLITTEFG--RLLVEPNEICVIPRGVRFRVTVLEPAR 193 (429)
T ss_pred ceEEEEeCCCCcccceeeccCCCEEEEEEeCcEEEEEecc--ceEecCCCEEEecCccEEEEeeCCCce
Confidence 456889987753 2335689999999999999999998 699999999999999999988877654
No 44
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.19 E-value=0.012 Score=49.27 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=40.0
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+.-|+.|+++|.+++..++. .+.+.+||++++|.|....|+..+
T Consensus 37 ~~~ei~~i~~G~~~~~i~~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 37 QFCEIVIVWRGNGLHVLNDH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred cceeEEEEecCceEEEECCe--eeeecCCeEEEEcCCCcccccccC
Confidence 78999999999999999875 799999999999999998887644
No 45
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.12 E-value=0.0089 Score=49.22 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=41.6
Q ss_pred eeeeC-CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 106 FPWTY-SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 106 f~w~y-~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+++|+ +.-|+.|+++|.+++..++. .+.+++||++++|+|....|+..+
T Consensus 28 ~~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 28 FPEHHHDFHEIVIVEHGTGIHVFNGQ--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccCceeEEEEecCceeeEecCC--cccccCCcEEEECCCccchhhhcc
Confidence 44553 67999999999999999986 699999999999999887776544
No 46
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=96.01 E-value=0.021 Score=47.97 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=40.5
Q ss_pred EEEecCCce---eeeeCCCc--eEEEEEEcEEEEEeCCCc---eeEEEcCCcEEEEcCCCEE
Q 031109 97 LRWGCPPSK---FPWTYSDK--ETCYLLEGKVKVYPDGSN---EGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 97 GiWe~~pg~---f~w~y~~d--E~~yVLEG~vtVt~dgG~---e~v~i~AGDlv~fPkG~~~ 150 (165)
+.-..+||. .+||-..| |+.|+|+|+...+..+.+ ....++|||.+.+|.++-.
T Consensus 83 ~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH 144 (209)
T COG2140 83 AEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGH 144 (209)
T ss_pred eEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcce
Confidence 577888885 35664444 599999999988876531 2466888999999999853
No 47
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.079 Score=39.14 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=53.0
Q ss_pred eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 94 WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
.++|+-. |+++.+...+-|.+.++.|.++|..+|..+=.++.||..|-+|...+-...|.++
T Consensus 25 asVGVm~--~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaea 86 (94)
T COG3123 25 ASVGVMA--PGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEA 86 (94)
T ss_pred eeEEEEe--ceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeee
Confidence 6778764 5666666778999999999999999988677999999999999999988887775
No 48
>PLN00212 glutelin; Provisional
Probab=95.66 E-value=0.031 Score=52.13 Aligned_cols=52 Identities=13% Similarity=0.330 Sum_probs=38.7
Q ss_pred EecCCcee---eeeCCCceEEEEEEcEEEEEeC--CCceeE--EEcCCcEEEEcCCCEE
Q 031109 99 WGCPPSKF---PWTYSDKETCYLLEGKVKVYPD--GSNEGV--EIGAGDLVVFPKGMSC 150 (165)
Q Consensus 99 We~~pg~f---~w~y~~dE~~yVLEG~vtVt~d--gG~e~v--~i~AGDlv~fPkG~~~ 150 (165)
=...++.. .|+-...|++||++|++.|..- .|...+ ++.+||+|+||+|+..
T Consensus 353 v~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v 411 (493)
T PLN00212 353 VNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAV 411 (493)
T ss_pred EEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeE
Confidence 33345553 3667799999999999988763 343333 6999999999999966
No 49
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.36 E-value=0.064 Score=45.95 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=35.6
Q ss_pred CceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 112 DKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 112 ~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
.+-+.+|+||+++++.+|. +..+..|+-+++|+|..-+..
T Consensus 83 ae~~lfVv~Ge~tv~~~G~--th~l~eggyaylPpgs~~~~~ 122 (264)
T COG3257 83 AETFLFVVSGEITVKAEGK--THALREGGYAYLPPGSGWTLR 122 (264)
T ss_pred ceEEEEEEeeeEEEEEcCe--EEEeccCCeEEeCCCCcceEe
Confidence 4678899999999999875 799999999999999877666
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=95.24 E-value=0.062 Score=47.91 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 110 YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
-....++||+||+.+.+.+++ ..+.++||+|++|.+...++...+.
T Consensus 268 ~T~s~Vf~VieG~G~s~ig~~--~~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 268 STDATVFCVVEGRGQVRIGDA--VFRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred ccccEEEEEEeCeEEEEECCE--EEEecCCCEEEECCCCcEecccCCC
Confidence 345899999999999999775 7999999999999998877766554
No 51
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=94.98 E-value=0.076 Score=44.09 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=45.9
Q ss_pred ceeeEEEecCCce-eeee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 93 IWRILRWGCPPSK-FPWT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 93 ~~~~GiWe~~pg~-f~w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
..++-+|...||. ++.| ....|+.+||+|++. +++ .++.+||.+..|.|....+...+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--de~----g~y~~Gd~i~~p~~~~H~p~a~~ 185 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--DET----GVYGVGDFEEADGSVQHQPRTVS 185 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--cCC----CccCCCeEEECCCCCCcCcccCC
Confidence 4677899999977 5655 577999999999963 333 46899999999999988777664
No 52
>PLN00212 glutelin; Provisional
Probab=94.75 E-value=0.14 Score=47.83 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=46.7
Q ss_pred EecCCcee--eeeCCCceEEEEEEcEEEEEeC--CCce--------------------------eEEEcCCcEEEEcCCC
Q 031109 99 WGCPPSKF--PWTYSDKETCYLLEGKVKVYPD--GSNE--------------------------GVEIGAGDLVVFPKGM 148 (165)
Q Consensus 99 We~~pg~f--~w~y~~dE~~yVLEG~vtVt~d--gG~e--------------------------~v~i~AGDlv~fPkG~ 148 (165)
-...|..+ |.+.+..+++||++|+.++..- |.-| ...|+.||++.||+|.
T Consensus 85 ~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~ 164 (493)
T PLN00212 85 RVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGV 164 (493)
T ss_pred EEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCC
Confidence 45577775 4455899999999999987542 2111 2589999999999999
Q ss_pred EEEEEEcee--eEEEEEe
Q 031109 149 SCTWDVSVG--VDKHYKF 164 (165)
Q Consensus 149 ~~tW~V~e~--vrK~Y~~ 164 (165)
..-|.-... +..++.+
T Consensus 165 ~hw~yN~Gd~~~v~v~~~ 182 (493)
T PLN00212 165 AHWFYNDGDAPVVALYVY 182 (493)
T ss_pred eEEEEeCCCCcEEEEEEE
Confidence 887766543 4344443
No 53
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=94.73 E-value=0.3 Score=42.17 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=42.5
Q ss_pred eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCC-EEEEEEce
Q 031109 94 WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGM-SCTWDVSV 156 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~-~~tW~V~e 156 (165)
+.+-.|...........+.-.++.+++|+++|..++ +.+++++|+.|++|++. ..+.+-..
T Consensus 235 F~~~~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~ipa~~~~~~i~g~~ 296 (302)
T TIGR00218 235 FSVYKWDISGKAEFIQQQSALILSVLEGSGRIKSGG--KTLPLKKGESFFIPAHLGPFTIEGEC 296 (302)
T ss_pred eEEEEEEeCCceeeccCCCcEEEEEEcceEEEEECC--EEEEEecccEEEEccCCccEEEEeeE
Confidence 666666654332111234556788999999998744 37999999999999997 56655433
No 54
>PLN02288 mannose-6-phosphate isomerase
Probab=94.72 E-value=0.15 Score=46.31 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=45.8
Q ss_pred ccccccc-eeeEEEecCCce-eeee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEE
Q 031109 87 KTHLEAI-WRILRWGCPPSK-FPWT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTW 152 (165)
Q Consensus 87 ~~~~~~~-~~~GiWe~~pg~-f~w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW 152 (165)
.|..+-. +.+-.+...++. .... .+.-+++.+++|+++|...+++...++++|+.|++|++..+.|
T Consensus 326 ~y~~P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~~ 394 (394)
T PLN02288 326 RYLPPFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV 394 (394)
T ss_pred EECCCCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcccC
Confidence 3444433 666556655543 3333 3567899999999999876652136799999999999988765
No 55
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.62 E-value=0.088 Score=43.15 Aligned_cols=46 Identities=26% Similarity=0.485 Sum_probs=37.9
Q ss_pred CCceEEEEEEcEEEEEeCCCce---eEEEcCCcEEEEcCCCEEEEEEce
Q 031109 111 SDKETCYLLEGKVKVYPDGSNE---GVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e---~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+.+|+-|||+|..-+...+.++ .+-+..||++++|+|.-..+.++.
T Consensus 92 ~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 92 EDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred chhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 5689999999999887766533 456899999999999998887764
No 56
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.59 E-value=0.079 Score=41.63 Aligned_cols=51 Identities=24% Similarity=0.477 Sum_probs=37.7
Q ss_pred EecCCcee---eeeCCCceEEEEEEcEEEEEeCCC-ceeEEEcCCcEEEEcCCCE
Q 031109 99 WGCPPSKF---PWTYSDKETCYLLEGKVKVYPDGS-NEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 99 We~~pg~f---~w~y~~dE~~yVLEG~vtVt~dgG-~e~v~i~AGDlv~fPkG~~ 149 (165)
=...|+.- ..|-..+-.+|+|+|++...-.+. ++..+.+|||.|.+|+|..
T Consensus 51 vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVP 105 (142)
T COG4101 51 VTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVP 105 (142)
T ss_pred EeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCC
Confidence 34555553 234445667899999999988764 3468899999999999974
No 57
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.20 E-value=0.13 Score=42.97 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=36.2
Q ss_pred CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 110 YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
...-++.++++|..++..+++ .+.+++||+++||+|....+..
T Consensus 47 ~~~~~i~~~~~G~~~~~~~~~--~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFNGGR--AFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred ccceEEEEEEeccEEEecCCe--eEecCCCCEEEECCCCceeecc
Confidence 345688999999999987765 7999999999999999776543
No 58
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.76 E-value=0.24 Score=45.12 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=54.2
Q ss_pred eeeEEEecCCce---eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEE
Q 031109 94 WRILRWGCPPSK---FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHY 162 (165)
Q Consensus 94 ~~~GiWe~~pg~---f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y 162 (165)
..+-+|....+- |-+..+.+|+.++-.|++.+..+=| ..++++||+.+||.|+.-+-+..+..-..|
T Consensus 125 ~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G--~l~v~pgeiavIPRG~~frve~~~~~~rgy 194 (427)
T COG3508 125 VAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG--VLEVEPGEIAVIPRGTTFRVELKDGEARGY 194 (427)
T ss_pred eEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec--eEEecCCcEEEeeCCceEEEEecCCceEEE
Confidence 456678776654 3445688999999999999999998 699999999999999999888866543333
No 59
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=93.74 E-value=0.6 Score=42.23 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=40.8
Q ss_pred eeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCE
Q 031109 94 WRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 94 ~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~ 149 (165)
+.+-.+..+........+.-.+..+++|+++|..++ +...+++|+.|++|++..
T Consensus 321 F~~~~~~l~~~~~~~~~~~~~Illv~~G~~~i~~~~--~~~~l~~G~~~fipa~~~ 374 (389)
T PRK15131 321 FAFSLHDLSDQPTTLSQQSAAILFCVEGEAVLWKGE--QQLTLKPGESAFIAANES 374 (389)
T ss_pred cEEEEEEECCceEEecCCCcEEEEEEcceEEEEeCC--eEEEECCCCEEEEeCCCc
Confidence 777777765543443334568899999999998744 379999999999999754
No 60
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=93.71 E-value=0.12 Score=42.37 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=31.0
Q ss_pred EecCCceeeee----CCCceEEEEEEcEEEEEeCCCc-----e--eEEEcCCcEEEEcCCCEEE
Q 031109 99 WGCPPSKFPWT----YSDKETCYLLEGKVKVYPDGSN-----E--GVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 99 We~~pg~f~w~----y~~dE~~yVLEG~vtVt~dgG~-----e--~v~i~AGDlv~fPkG~~~t 151 (165)
.-.+.|.|.-. .+..|+.++|+|+..+-..+.. + .++++|||+|.+|.|+-..
T Consensus 66 ~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~ 129 (182)
T PF06560_consen 66 YFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR 129 (182)
T ss_dssp E-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred cccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence 44444544322 6689999999999998764421 1 3789999999999998643
No 61
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=93.36 E-value=1.7 Score=33.97 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=46.6
Q ss_pred eeeeC-CCceEEEEEEcEEEEEeC-CCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEEEe
Q 031109 106 FPWTY-SDKETCYLLEGKVKVYPD-GSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHYKF 164 (165)
Q Consensus 106 f~w~y-~~dE~~yVLEG~vtVt~d-gG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y~~ 164 (165)
.+.+| ..-|.||.++|+.+|.+- +| +...|+||.+..+-+--...-...+.++-.=+|
T Consensus 48 t~~~YknHlEAvyci~G~Gev~~~~~G-~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVF 107 (126)
T PF06339_consen 48 THIHYKNHLEAVYCIEGEGEVEDLDTG-EVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVF 107 (126)
T ss_pred eEEEecCceEEEEEEeceEEEEEccCC-cEEEcCCCeEEecCCCccEEEEecCCEEEEEEc
Confidence 44555 468999999999999996 55 799999999999999888877777766655444
No 62
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.13 E-value=0.88 Score=37.97 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=48.8
Q ss_pred cceeeEEEecCCceeeee-----CCCce---EEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEE
Q 031109 92 AIWRILRWGCPPSKFPWT-----YSDKE---TCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDK 160 (165)
Q Consensus 92 ~~~~~GiWe~~pg~f~w~-----y~~dE---~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK 160 (165)
++..++.+.+++..+... -+.+| +.++++|.+.+..+|. ...+.|||++++|.+....+...+..+.
T Consensus 43 ~~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~ 117 (302)
T PRK09685 43 GGLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR--QVQLAAGDITLIDASRPCSIYPQGLSEQ 117 (302)
T ss_pred CCEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe--EEEEcCCCEEEEECCCCcEeecCCCcee
Confidence 446677788887765432 12233 5566899999999876 6999999999999998888776665543
No 63
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.35 E-value=0.73 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=42.8
Q ss_pred EecCCce-eeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 99 WGCPPSK-FPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 99 We~~pg~-f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
|+-.|+. ..|.-.......+.+|.|=||.++..+.+-+.|||.+.++.|-...-+
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEE
Confidence 4445555 456666666699999999999988656899999999999999876443
No 64
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.97 E-value=0.48 Score=39.06 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCceEEEEEEcEEEEEe--CCCc-eeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 110 YSDKETCYLLEGKVKVYP--DGSN-EGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~--dgG~-e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
...+|+-|+|+|+..+.. .+|. -.+.+.+||++.+|.|...-++..+
T Consensus 93 H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~ 142 (181)
T COG1791 93 HTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE 142 (181)
T ss_pred cCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC
Confidence 467999999999987665 3431 1366899999999999998888766
No 65
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.26 E-value=0.66 Score=42.36 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEEE
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHYK 163 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y~ 163 (165)
+.--+..|++|+.++..+.+ ....+..||+++||+............-+.|.
T Consensus 352 ~~~SIllv~~G~g~l~~~t~-~~~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr 403 (411)
T KOG2757|consen 352 DGPSILLVLKGSGILKTDTD-SKILVNRGDVLFIPANHPIHLSSSSDPFLGYR 403 (411)
T ss_pred CCceEEEEEecceEEecCCC-CceeeccCcEEEEcCCCCceeeccCcceeeee
Confidence 55678899999999999944 37999999999999999999888887667775
No 66
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.22 E-value=1.2 Score=33.25 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=38.0
Q ss_pred EEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeEEEE
Q 031109 115 TCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVDKHY 162 (165)
Q Consensus 115 ~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vrK~Y 162 (165)
++..++|.+.++-.+. ...+.|||+++++.+-..+-+.....++..
T Consensus 58 l~~~~~G~~~~~~~g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~ 103 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLS 103 (172)
T ss_pred EEEEccCCEEEEECCE--EEEEcCCeEEEEcCCCCEEEEECCCccEEE
Confidence 4556799999998764 799999999999999988888777766654
No 67
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=89.89 E-value=0.87 Score=38.44 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=46.0
Q ss_pred EEecCCceeeee--CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 98 RWGCPPSKFPWT--YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 98 iWe~~pg~f~w~--y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+|..+-++--+. +-.|-.|.||.|++.-..+|..++..+.|||....|+|..-+...++
T Consensus 103 ifGtpvgTeGhsGrh~ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~ 163 (216)
T PF04622_consen 103 IFGTPVGTEGHSGRHWADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPP 163 (216)
T ss_pred hhcCcCCCCCCCcceEeeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCC
Confidence 455544443221 34799999999999999998877899999999999999988777654
No 68
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=89.26 E-value=0.65 Score=41.47 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=40.8
Q ss_pred eEEEecCCceee--eeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 96 ILRWGCPPSKFP--WTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 96 ~GiWe~~pg~f~--w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
+|+=-..||... +.-...-+.+|+||+-..+.-|| +.+.+++||+|+.|.|....+.
T Consensus 83 a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g-~~~~~~~gD~~~tP~w~wH~H~ 141 (335)
T TIGR02272 83 AGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG-ERTTMHPGDFIITPSWTWHDHG 141 (335)
T ss_pred hhhEEeCCCCCCCccccccceEEEEEEcCceEEEECC-EEEeeeCCCEEEeCCCeeEecc
Confidence 344455666642 23456789999999986555566 6899999999999998655543
No 69
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=89.23 E-value=1.9 Score=33.03 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=29.5
Q ss_pred eeeeCCCceEEEEEEcEEEEEeCCCce--eEEEcCC-cEEEEcCCCEEEEE
Q 031109 106 FPWTYSDKETCYLLEGKVKVYPDGSNE--GVEIGAG-DLVVFPKGMSCTWD 153 (165)
Q Consensus 106 f~w~y~~dE~~yVLEG~vtVt~dgG~e--~v~i~AG-Dlv~fPkG~~~tW~ 153 (165)
+..|-..+|.+++|.|+++|..+++.+ .+.+..- ..+.+|+|......
T Consensus 48 ~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~ 98 (131)
T PF05523_consen 48 WHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIK 98 (131)
T ss_dssp EEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE
T ss_pred ccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhh
Confidence 344567899999999999999877633 3445555 48999999887764
No 70
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=88.65 E-value=1.3 Score=38.46 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=44.4
Q ss_pred EecCCceee-eeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 99 WGCPPSKFP-WTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 99 We~~pg~f~-w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
|.-....+. .....-=++++..|.++|..++| +...+.++.++++|++....-...+
T Consensus 24 ~~~~~~~~~~~~~~~~~li~v~~G~~~i~~~~g-~~l~i~~p~~~~~p~~~~~~~~~~~ 81 (291)
T PRK15186 24 WQRKSLSLQGLNLLQSVLIKLTTGKISITTSSG-EYITASGPMLIFLAKDQTIHITMEE 81 (291)
T ss_pred hcCCceEEEeeeecceEEEEeccceEEEEeCCC-ceEEeCCCeEEEEeCCcEEEEEecc
Confidence 554444444 23345679999999999999988 6899999999999999999765443
No 71
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=86.60 E-value=2.9 Score=31.36 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=39.6
Q ss_pred Cceeeee--CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 103 PSKFPWT--YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 103 pg~f~w~--y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
...|+.| -..+-+-||++|+++=.+.-|+ ...++|||+=.+-+|. +.|+.
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~-~~~l~~G~vq~m~AG~-Gi~H~ 90 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGN-RGVLRAGDVQWMTAGS-GIVHS 90 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTSE-EEEEETTEEEEEE-TT-TEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCCC-eeEeCCCeEEEEeCCC-CceEE
Confidence 4667776 3557778999999999999885 7899999999999994 55553
No 72
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=86.23 E-value=6.2 Score=35.10 Aligned_cols=56 Identities=14% Similarity=0.329 Sum_probs=43.7
Q ss_pred ccccceeeEEEecCC-ceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCC
Q 031109 89 HLEAIWRILRWGCPP-SKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKG 147 (165)
Q Consensus 89 ~~~~~~~~GiWe~~p-g~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG 147 (165)
...+.+.+-.|.... ..+. ....-.+++++||++++..++ +...+++|+.+++|+.
T Consensus 237 v~~~~F~l~~~~i~~~~~~~-~~~~~~il~v~eG~~~l~~~~--~~~~l~~G~s~~ipa~ 293 (312)
T COG1482 237 VPNEDFALYKWDISGTAEFI-KQESFSILLVLEGEGTLIGGG--QTLKLKKGESFFIPAN 293 (312)
T ss_pred ccccceEEEEEeccChhhhc-cCCCcEEEEEEcCeEEEecCC--EEEEEcCCcEEEEEcC
Confidence 334447888888875 3332 334678999999999999985 4899999999999998
No 73
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=85.13 E-value=6.5 Score=28.62 Aligned_cols=46 Identities=30% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc-eeeE
Q 031109 110 YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS-VGVD 159 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~-e~vr 159 (165)
-..+=++|+++|+++|. + +...+.+|++++|..|-.++-... +..+
T Consensus 18 ~~~~~~iyv~~G~~~v~---~-~~~~~~~~~~~~l~~g~~i~~~a~~~~a~ 64 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVG---G-EEDPLEAGQLVVLEDGDEIELTAGEEGAR 64 (104)
T ss_dssp TT-EEEEEEEESEEEET---T-TTEEEETTEEEEE-SECEEEEEESSSSEE
T ss_pred CCCEEEEEEEECcEEEC---C-CcceECCCcEEEECCCceEEEEECCCCcE
Confidence 45678999999998773 2 237899999999998888888877 4443
No 74
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=83.80 E-value=4.5 Score=31.46 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEcee
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~ 157 (165)
-.-=+|.|++|+=++..++. .+++.+|+.++.+.++..+-++.++
T Consensus 22 y~p~i~~vlQG~K~~~~g~~--~~~Y~~g~~lv~~~~lPv~~~v~~A 66 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHLGDQ--VFEYDAGQYLVSSVDLPVESEVVEA 66 (155)
T ss_pred cCCeEEEEEeeeEEEEECCc--eEEecCCcEEEecCCCcEEEEEeec
Confidence 34668999999999999864 7999999999999999999998654
No 75
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=83.11 E-value=3.4 Score=33.65 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=30.2
Q ss_pred ecCCcee-eee-CCCceEEEEEEcEEEEEeCCC-------ceeEEEcCCcEEEEcCCCEEE-EEEc
Q 031109 100 GCPPSKF-PWT-YSDKETCYLLEGKVKVYPDGS-------NEGVEIGAGDLVVFPKGMSCT-WDVS 155 (165)
Q Consensus 100 e~~pg~f-~w~-y~~dE~~yVLEG~vtVt~dgG-------~e~v~i~AGDlv~fPkG~~~t-W~V~ 155 (165)
.-.||+- +.| ...+|+++||+|+.++..... .+...+.+++.|.||.+.... |...
T Consensus 50 TfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 50 TFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 3456663 344 578999999999999987632 224789999999999986543 4433
No 76
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=81.50 E-value=1.1 Score=35.67 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=38.0
Q ss_pred eeEEEecCCcee-eeeCC-CceEEEEEEcEEEEE-------------e----------------C----------CCcee
Q 031109 95 RILRWGCPPSKF-PWTYS-DKETCYLLEGKVKVY-------------P----------------D----------GSNEG 133 (165)
Q Consensus 95 ~~GiWe~~pg~f-~w~y~-~dE~~yVLEG~vtVt-------------~----------------d----------gG~e~ 133 (165)
..-+|-..++.. ++||+ .+=+..+|.|+=++. + + .. -.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~-~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPP-YE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--E-EE
T ss_pred ccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCce-eE
Confidence 445788887775 57886 466677788876553 1 0 01 25
Q ss_pred EEEcCCcEEEEcCCCEEEEEEc
Q 031109 134 VEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 134 v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
++++|||+++||+||-..=+..
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEES
T ss_pred EEECCCeEEEECCCCeEEEEEc
Confidence 7899999999999997776665
No 77
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=80.29 E-value=3.5 Score=35.52 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCCceEEEEEEcEEEEEeCCC-ceeEEEcCCcEEEEcCC
Q 031109 110 YSDKETCYLLEGKVKVYPDGS-NEGVEIGAGDLVVFPKG 147 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG-~e~v~i~AGDlv~fPkG 147 (165)
...++-+|||+|.+.. ++. .+.+.+.||..+++|+|
T Consensus 54 H~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG 90 (251)
T PF14499_consen 54 HNADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAG 90 (251)
T ss_dssp ESS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT
T ss_pred eeeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCC
Confidence 4679999999998766 332 12466999999999999
No 78
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=78.31 E-value=6.8 Score=34.32 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=38.7
Q ss_pred CCCceEEE-EEEcEEEEEeCCCceeEEEcCCcEEEEcCCCE-EEEEEceee--EEEEE
Q 031109 110 YSDKETCY-LLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMS-CTWDVSVGV--DKHYK 163 (165)
Q Consensus 110 y~~dE~~y-VLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~-~tW~V~e~v--rK~Y~ 163 (165)
.+..|+|. +|.|.++|+.+| +..++++.|.+.+|+|.+ .+.....+. -|+|.
T Consensus 71 l~rrE~giV~lgG~~~V~vdG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 71 LERRELGIINIGGAGTVTVDG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred cCCcEEEEEEccceEEEEECC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 46688765 578999999876 478899999999999976 666544322 36664
No 79
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=76.98 E-value=7.8 Score=33.27 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred EEecCCce-eeeeCCCceEEE-EEEcEEEEEeCCCceeEEEcCC--------cEEEEcCCCEEEEEEceeeEEEEE
Q 031109 98 RWGCPPSK-FPWTYSDKETCY-LLEGKVKVYPDGSNEGVEIGAG--------DLVVFPKGMSCTWDVSVGVDKHYK 163 (165)
Q Consensus 98 iWe~~pg~-f~w~y~~dE~~y-VLEG~vtVt~dgG~e~v~i~AG--------Dlv~fPkG~~~tW~V~e~vrK~Y~ 163 (165)
+..-++++ +....+..|++. +|+|.++|+.+|. +..+++.- |.+.+|.|.+.+-.-.+. -++|.
T Consensus 31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~ 104 (261)
T PF04962_consen 31 VLRLEAGESLEFELERRELGVVNLGGKATVTVDGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAV 104 (261)
T ss_dssp CEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEE
T ss_pred EEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEE
Confidence 35555554 333456677765 5799999999885 47888887 999999999987776555 35554
No 80
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.88 E-value=3.5 Score=37.00 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=33.1
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
...-+.+|.||+..+..+| +...+.+||+|++|.+......
T Consensus 280 t~s~iy~V~eGsg~~~Ig~--~rf~~~~~D~fvVPsW~~~~~~ 320 (351)
T COG3435 280 TDSTIYHVVEGSGYTIIGG--ERFDWSAGDIFVVPSWAWHEHV 320 (351)
T ss_pred cCCEEEEEEecceeEEECC--EEeeccCCCEEEccCcceeecc
Confidence 4466777999999999876 4899999999999987654443
No 81
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=76.53 E-value=25 Score=30.60 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=36.8
Q ss_pred eeeEEEecCCc--eeeeeCCCceEE-EEEEcEEEEEeCC---------------------CceeEEEcCCcEEEEcCCCE
Q 031109 94 WRILRWGCPPS--KFPWTYSDKETC-YLLEGKVKVYPDG---------------------SNEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 94 ~~~GiWe~~pg--~f~w~y~~dE~~-yVLEG~vtVt~dg---------------------G~e~v~i~AGDlv~fPkG~~ 149 (165)
..+.++-..++ .|..|||..+++ .=++|+=+=..-. -...++++|||++.+|+|+-
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred cceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence 45667888888 688898765544 4467764432211 01258899999999999987
Q ss_pred EEEEEce
Q 031109 150 CTWDVSV 156 (165)
Q Consensus 150 ~tW~V~e 156 (165)
..=...+
T Consensus 194 H~~~~~~ 200 (319)
T PF08007_consen 194 HQAVTTD 200 (319)
T ss_dssp EEEEESS
T ss_pred CCCCCCC
Confidence 6555444
No 82
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=75.54 E-value=4.7 Score=39.45 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=37.1
Q ss_pred EEecCCceeeeeCC--CceEEEEEEcEEEEEeCCCceeEEEcCCcEE
Q 031109 98 RWGCPPSKFPWTYS--DKETCYLLEGKVKVYPDGSNEGVEIGAGDLV 142 (165)
Q Consensus 98 iWe~~pg~f~w~y~--~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv 142 (165)
.=.|.||..-+|.. .|-+|+|+.|++.|.-||. -..-++.||.|
T Consensus 573 ~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVF 618 (971)
T KOG0501|consen 573 TNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVF 618 (971)
T ss_pred hccCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccc
Confidence 45789999998864 5999999999999999986 35568999976
No 83
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.14 E-value=4.2 Score=36.55 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=41.9
Q ss_pred eEEEecCCcee-eee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCC
Q 031109 96 ILRWGCPPSKF-PWT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGM 148 (165)
Q Consensus 96 ~GiWe~~pg~f-~w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~ 148 (165)
+|+--.-||+. +-| ....-+-+|+||+--.|.-+| +...+.+||.++-|+|.
T Consensus 94 AglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdG-er~~M~~GDfilTP~w~ 147 (351)
T COG3435 94 AGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDG-ERTPMEAGDFILTPAWT 147 (351)
T ss_pred hhhheecCcccCCcccccccceEEEEeccceeEeecC-ceeeccCCCEEEccCce
Confidence 45555666764 223 567889999999999999888 79999999999999874
No 84
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=72.94 E-value=3.6 Score=31.51 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred CCeeecccccccccceeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCE
Q 031109 79 QPRVLPSKKTHLEAIWRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 79 ~P~~~~~~~~~~~~~~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~ 149 (165)
=|+|..-..|.+.+. |-|+-+.+.|.-...+ .-+....+.+.+| ..+..||.|++=|.++
T Consensus 5 CP~C~seytY~dg~~-----~iCpeC~~EW~~~~~~---~~~~~~~~kDsnG---~~L~dGDsV~liKDLk 64 (109)
T TIGR00686 5 CPKCNSEYTYHDGTQ-----LICPSCLYEWNENEVN---DDDDELIVKDCNG---NLLANGDSVILIKDLK 64 (109)
T ss_pred CCcCCCcceEecCCe-----eECccccccccccccc---cccCCceEEcCCC---CCccCCCEEEEEeecc
Confidence 367776667777666 9999999998744322 1233345667677 5799999999976553
No 85
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=72.79 E-value=9.2 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCceEEEEEEcEEEEEeCCCc-e---eEEEcCCcEE
Q 031109 111 SDKETCYLLEGKVKVYPDGSN-E---GVEIGAGDLV 142 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~-e---~v~i~AGDlv 142 (165)
..+.+++|++|.+.+...+.+ . -..+.+||.+
T Consensus 16 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 16 PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred cCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 358999999999999875431 2 2468888876
No 86
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=72.10 E-value=8.1 Score=33.29 Aligned_cols=83 Identities=20% Similarity=0.444 Sum_probs=50.7
Q ss_pred hcccccCCCCcccC-CCCeeecccccccccceeeEEEecCCceeeeeC-CCceEEEEEEcEEEEEe--CCCceeEEEcCC
Q 031109 64 ELGVRQWPKHCHTG-GQPRVLPSKKTHLEAIWRILRWGCPPSKFPWTY-SDKETCYLLEGKVKVYP--DGSNEGVEIGAG 139 (165)
Q Consensus 64 ~lGv~~Wp~~~~~~-G~P~~~~~~~~~~~~~~~~GiWe~~pg~f~w~y-~~dE~~yVLEG~vtVt~--dgG~e~v~i~AG 139 (165)
-++++.|-.++--. -.|.| |..-..+++.+-+=...--+-.+|. +..|++|-+.|...+.. .+..+.+.|+.|
T Consensus 6 pI~I~~WikeN~g~f~PPVc---NkCmh~~qlkVm~VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qG 82 (279)
T KOG3995|consen 6 PIGIRAWVKENRGSFQPPVC---NKCMHQEQLKVMFVGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQG 82 (279)
T ss_pred ccChHHHHhhcccccCCccc---hhhccccCeEEEEecCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecC
Confidence 45667775543222 12333 3333344555544333333345674 56999999999987765 333456889999
Q ss_pred cEEEEcCCCE
Q 031109 140 DLVVFPKGMS 149 (165)
Q Consensus 140 Dlv~fPkG~~ 149 (165)
|.+.+|+...
T Consensus 83 e~flLParVp 92 (279)
T KOG3995|consen 83 EIFLLPARVP 92 (279)
T ss_pred cEEEeccCCC
Confidence 9999998753
No 87
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=71.15 E-value=19 Score=31.37 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=42.1
Q ss_pred eEEEecCCcee-eeeCCCceEEEE-EEcEEEEEeCCCceeEEEc---------CCcEEEEcCCCEEEEEEc
Q 031109 96 ILRWGCPPSKF-PWTYSDKETCYL-LEGKVKVYPDGSNEGVEIG---------AGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 96 ~GiWe~~pg~f-~w~y~~dE~~yV-LEG~vtVt~dgG~e~v~i~---------AGDlv~fPkG~~~tW~V~ 155 (165)
..+|+..+|.- .-.....|.|.| |+|+++|+..|. ....++ +=|.|.+|+|-..+-.-.
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~-~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~ 100 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGS-TFGEIGTRMSVFERKPPDSVYVPAGSAFSVTAT 100 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccc-hHhhcccccccccCCCCCeEEecCCceEEEEee
Confidence 35788888874 344667888875 699999999874 233343 669999999976544433
No 88
>PRK15044 transcriptional regulator SirC; Provisional
Probab=71.07 E-value=10 Score=33.52 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=38.0
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
..-=++.+-.|.++|+.+.| |..+..|-+++++|||-+++-...
T Consensus 39 ~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~k~~~i~~~~~ 82 (295)
T PRK15044 39 ANCLLFKLNKGSLRIENEFG-EFIEQSAPCLFLLEKDQTITLSMS 82 (295)
T ss_pred cceEEEEEecCeEEEEecCC-ceEEecCCeeEEEeCCCEEEEeHh
Confidence 44567888999999999999 799999999999999998876543
No 89
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=68.63 E-value=12 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred CceEEEEEEcEEEEEe--CCCcee-E-EEcCCcEEEE
Q 031109 112 DKETCYLLEGKVKVYP--DGSNEG-V-EIGAGDLVVF 144 (165)
Q Consensus 112 ~dE~~yVLEG~vtVt~--dgG~e~-v-~i~AGDlv~f 144 (165)
.+.+++|++|.|++.- ++|.+. . .+.+||.|=.
T Consensus 26 ~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 26 SDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 3678999999999854 345332 2 2599998754
No 90
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=67.63 E-value=8 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=33.9
Q ss_pred eEEEecCCce-eeee-CCC-ceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcC
Q 031109 96 ILRWGCPPSK-FPWT-YSD-KETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPK 146 (165)
Q Consensus 96 ~GiWe~~pg~-f~w~-y~~-dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPk 146 (165)
+-|=.-+||. .++- ... +-=.|||||+.....+.. -++++|||.+.+-+
T Consensus 184 v~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~d--wv~V~aGD~mwm~A 235 (264)
T COG3257 184 VHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNN--WVPVEAGDYIWMGA 235 (264)
T ss_pred EEEEEecCCcccchhhhhhhhcceEEEecceEEeecCc--eEEeecccEEEeec
Confidence 4455556665 2321 112 233699999999999875 79999999998754
No 91
>COG1741 Pirin-related protein [General function prediction only]
Probab=66.02 E-value=13 Score=32.37 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=38.5
Q ss_pred CCc-eeeee-CCC-ceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEE
Q 031109 102 PPS-KFPWT-YSD-KETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 102 ~pg-~f~w~-y~~-dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~t 151 (165)
.|| .|++| +.. +=+-|||+|+++=.+..|+ ...++|||+-.+-+|.-+.
T Consensus 52 ~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn-~~~i~pGdvqwMTAG~GI~ 103 (276)
T COG1741 52 APGRGFPPHPHRGLETVTYVLDGEIEHRDSLGN-KGVIRPGDVQWMTAGSGIV 103 (276)
T ss_pred cCCCcCCCCCCCCcEEEEEEEccEEEEeecCCc-eeeecccceeEEcCCCcee
Confidence 444 37776 444 4456999999999999885 8999999999999997554
No 92
>PRK10220 hypothetical protein; Provisional
Probab=62.72 E-value=7.6 Score=29.80 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred CCeeecccccccccceeeEEEecCCceeeeeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCE
Q 031109 79 QPRVLPSKKTHLEAIWRILRWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 79 ~P~~~~~~~~~~~~~~~~GiWe~~pg~f~w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~ 149 (165)
=|+|..-..|.+.+. |-|.-+.+.|.-.+.+. -+....+.+..| ..+..||.|++=|.++
T Consensus 6 CP~C~seytY~d~~~-----~vCpeC~hEW~~~~~~~---~~~~~~vkDsnG---~~L~dGDsV~viKDLk 65 (111)
T PRK10220 6 CPKCNSEYTYEDNGM-----YICPECAHEWNDAEPAQ---ESDELIVKDANG---NLLADGDSVTIVKDLK 65 (111)
T ss_pred CCCCCCcceEcCCCe-----EECCcccCcCCcccccc---ccCCceEEcCCC---CCccCCCEEEEEeecc
Confidence 477877778887776 99999999987543110 122244666666 5799999999877653
No 93
>PRK11396 hypothetical protein; Provisional
Probab=62.07 E-value=46 Score=27.65 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=38.2
Q ss_pred CCceEEEEEEc-EEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 111 SDKETCYLLEG-KVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 111 ~~dE~~yVLEG-~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
..|-++.|||| .++++.++. ..+++.++|.+.|+-+....=+...
T Consensus 54 GidR~i~lL~G~g~~L~~~~~-~~~~l~~~~p~~F~Gd~~v~a~L~~ 99 (191)
T PRK11396 54 GMERIVTLLEGGEMFLESADR-FNHTLKPLQPFAFAADQVVKAKLTA 99 (191)
T ss_pred CccEEEEEEECCCEEEeeCCc-cceecCCCCCeEeCCCCeeEEEECC
Confidence 57999999998 799998776 4678899999999999988877654
No 94
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=60.54 E-value=43 Score=27.08 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCceEEEEEEcE-EEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE-ceeeEE
Q 031109 111 SDKETCYLLEGK-VKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV-SVGVDK 160 (165)
Q Consensus 111 ~~dE~~yVLEG~-vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V-~e~vrK 160 (165)
..+=+..+|+|. ++++.++..+...+.+++.+.|+-++..+-.. ..+++-
T Consensus 53 G~~R~l~~L~G~gl~L~~~~~~~~~~l~p~~~~~F~G~~~v~~~l~~G~~~d 104 (184)
T PF05962_consen 53 GYDRILTLLEGNGLRLTHDGQQEHTLLQPFQPFAFDGDWPVTSELLDGPVRD 104 (184)
T ss_dssp T-EEEEEEEESS-EEEEETTCSE-EEE-BT--EEEETTS-EEEEESSS-EEE
T ss_pred CCcEEEEEEeCCcEEEecCCCcceeccCCCCcEEcCCCCeEEEEECCCCEEE
Confidence 457799999999 99999987335669999999999999887763 334543
No 95
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=60.17 E-value=8.7 Score=31.11 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEE
Q 031109 110 YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 110 y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~ 150 (165)
-...=++|+++|++.|+.++ +.+.+.+||++.+-.....
T Consensus 133 ~~~~~l~~~~~G~~~i~~~~--~~~~L~~~d~l~~~~~~~~ 171 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITEGG--NCISLSAGDLLLIDDEEDL 171 (184)
T ss_dssp --SEEEEEESSS-EEECCCE--EEEEE-TT-EEEEESEECE
T ss_pred CCCEEEEEEeeCcEEEecCC--CceEcCCCCEEEEeCCCce
Confidence 34566789999999888773 4799999999998875444
No 96
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=59.92 E-value=9.2 Score=28.50 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.9
Q ss_pred CcEEEEcCCCEEEEEEcee
Q 031109 139 GDLVVFPKGMSCTWDVSVG 157 (165)
Q Consensus 139 GDlv~fPkG~~~tW~V~e~ 157 (165)
.+++.||+|..|+|.+.-|
T Consensus 33 ~~~~~~p~n~~C~y~i~iP 51 (120)
T PF02408_consen 33 TSPPQFPANQNCTYQINIP 51 (120)
T ss_pred CCccccCCCCceEEEEEcC
Confidence 3999999999999999665
No 97
>PRK15185 transcriptional regulator HilD; Provisional
Probab=59.81 E-value=22 Score=31.57 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=36.2
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
..-=++|+-.|.++|+.++| ...+-|+++++++|+-...-..
T Consensus 48 ~~~~l~~~~~~~~~i~~~~~--~~~~~~~~~~~~~k~~~i~~~~ 89 (309)
T PRK15185 48 SSFTLVCFRSGKLTISNNHD--TIYCDEPGMLVLKKEQVVNVTL 89 (309)
T ss_pred eeeEEEEEccceEEEEcCCc--eEEeCCCceEEEeCCcEEEEEh
Confidence 34557889999999999997 6899999999999999887643
No 98
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=58.23 E-value=77 Score=28.82 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=47.6
Q ss_pred ceeeEEEecCCceee---eeCCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceeeE
Q 031109 93 IWRILRWGCPPSKFP---WTYSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGVD 159 (165)
Q Consensus 93 ~~~~GiWe~~pg~f~---w~y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~vr 159 (165)
++.+-++.|..+--. +.-+.|=+..=-.|.+-|+.+=| ...+.++++.+||+|+.-.-+|.++-|
T Consensus 133 GlAIH~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~TEfG--rllV~P~EI~VIpqG~RFsi~v~~~sR 200 (446)
T KOG1417|consen 133 GLAIHIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITTEFG--RLLVTPNEIAVIPQGIRFSIDVPGPSR 200 (446)
T ss_pred ceEEEEEeecCCcccceeecCCCCEEEecccCcEEEEeecc--ceeecccceEEeecccEEEEecCCCCc
Confidence 344567777654422 12345555555689999999988 699999999999999999998887644
No 99
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=56.95 E-value=25 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCceEEEEEEcEEEEEe--CCCcee--EEEcCCcEEEE
Q 031109 111 SDKETCYLLEGKVKVYP--DGSNEG--VEIGAGDLVVF 144 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~--dgG~e~--v~i~AGDlv~f 144 (165)
+.+.+.+|++|.+.+.. ++|.+. ..+++||.+-.
T Consensus 37 ~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 37 KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45789999999999873 344332 34899999743
No 100
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=54.68 E-value=35 Score=24.48 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=29.3
Q ss_pred eEEEEEEcEEEEEeCCC-----ceeEEEcCCcEEEEcCCCEEEEE
Q 031109 114 ETCYLLEGKVKVYPDGS-----NEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 114 E~~yVLEG~vtVt~dgG-----~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
.-..||+|++++..-++ .+.+.+.+|+..+++......=+
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~ 71 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVE 71 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEE
T ss_pred EEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEE
Confidence 45789999999987554 35788999999999987654433
No 101
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=52.84 E-value=12 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=11.8
Q ss_pred eEEEcCCcEEEEcCCCE
Q 031109 133 GVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~~ 149 (165)
.++-++||+|++|+|+-
T Consensus 82 ~~~Q~~Ge~V~i~pg~~ 98 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAY 98 (114)
T ss_dssp EEEEETT-EEEE-TT-E
T ss_pred cceECCCCEEEECCCce
Confidence 57789999999999954
No 102
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=52.73 E-value=32 Score=22.84 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCceEEEEEEcEEEEEeC--CCc--eeEEEcCCcEEEEc
Q 031109 111 SDKETCYLLEGKVKVYPD--GSN--EGVEIGAGDLVVFP 145 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~d--gG~--e~v~i~AGDlv~fP 145 (165)
+.+.+.+|++|.+.+... +|. ....+.+||.+-..
T Consensus 34 ~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 34 VGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred cCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 458899999999998754 332 13457899988554
No 103
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=52.66 E-value=29 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCceEEEEEEcEEEEEe--CCCcee--EEEcCCcEEE
Q 031109 111 SDKETCYLLEGKVKVYP--DGSNEG--VEIGAGDLVV 143 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~--dgG~e~--v~i~AGDlv~ 143 (165)
+.+-+.+|++|.|.+.- ++|.+. ..+++||+|=
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 35778999999999754 445342 3479999774
No 104
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=51.98 E-value=69 Score=25.89 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=29.8
Q ss_pred cCCceeeee--CCCceEEEEEEcEEEEEe--CCCceeE--EEcCCcEEEEcCC
Q 031109 101 CPPSKFPWT--YSDKETCYLLEGKVKVYP--DGSNEGV--EIGAGDLVVFPKG 147 (165)
Q Consensus 101 ~~pg~f~w~--y~~dE~~yVLEG~vtVt~--dgG~e~v--~i~AGDlv~fPkG 147 (165)
-.++..-+. -+.+.+.+|++|.|.+.. ++|.+.+ .+.+||++-+..+
T Consensus 43 ~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~ 95 (230)
T PRK09391 43 YKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESG 95 (230)
T ss_pred ECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCC
Confidence 345554443 245778888999999864 3453322 2589998876554
No 105
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=51.94 E-value=64 Score=28.90 Aligned_cols=41 Identities=37% Similarity=0.586 Sum_probs=31.5
Q ss_pred ceeeee-CCCceEEEEEEcEEEEEeCCCc--eeEEEcCCcEEEEc
Q 031109 104 SKFPWT-YSDKETCYLLEGKVKVYPDGSN--EGVEIGAGDLVVFP 145 (165)
Q Consensus 104 g~f~w~-y~~dE~~yVLEG~vtVt~dgG~--e~v~i~AGDlv~fP 145 (165)
..|... .+..=..-|+||.|.|.+.++. +.+ +++|..+.|-
T Consensus 185 T~F~Vr~~~~~t~V~v~eG~V~v~~~~~~~~~~v-l~aGq~~~~~ 228 (322)
T COG3712 185 TRFNVRREDGATRVTVLEGSVRVSPAGGRAAERV-LGAGQSVRFD 228 (322)
T ss_pred eEEEEEecCCcEEEEEEeeeEEEecCCCcccchh-cCCCeeEEec
Confidence 456643 5556667899999999999862 355 9999998887
No 106
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=51.43 E-value=30 Score=27.80 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=29.8
Q ss_pred ecCCceeeee--CCCceEEEEEEcEEEEEe--CCCcee--EEEcCCcEEEEc
Q 031109 100 GCPPSKFPWT--YSDKETCYLLEGKVKVYP--DGSNEG--VEIGAGDLVVFP 145 (165)
Q Consensus 100 e~~pg~f~w~--y~~dE~~yVLEG~vtVt~--dgG~e~--v~i~AGDlv~fP 145 (165)
...++.+-+. -+.+.+++|++|.|.+.. ++|.+. ..+.+||+|-..
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 3444554443 245889999999999864 445332 347899987643
No 107
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=50.36 E-value=17 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=31.1
Q ss_pred CceeeeeCCCceEEEEEE----cEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 103 PSKFPWTYSDKETCYLLE----GKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 103 pg~f~w~y~~dE~~yVLE----G~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
++.-.-+-+.+|++..+- |.+.+..=|. +.-.|+|||++.+-+|+.--|.
T Consensus 26 ~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~e-~~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 26 YGRATKTKDGHEVRSCKVADETGSINISVWDE-EGCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred eceeeeccCCCEEEEEEEecccceEEEEEecC-cCcccCCccEEEecccchhhhc
Confidence 333333345566666553 3444444332 3468999999999999987775
No 108
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=49.10 E-value=21 Score=30.12 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=21.9
Q ss_pred cEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEceee
Q 031109 121 GKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSVGV 158 (165)
Q Consensus 121 G~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e~v 158 (165)
|+..+....|...+...+||+|+||.. .++-..+|
T Consensus 130 GEl~~~~~~g~~~Vkp~aG~~vlfps~---~lH~v~pV 164 (226)
T PRK05467 130 GELVIEDTYGEHRVKLPAGDLVLYPST---SLHRVTPV 164 (226)
T ss_pred CceEEecCCCcEEEecCCCeEEEECCC---Cceeeeec
Confidence 344444343435788899999999965 34444444
No 109
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=48.78 E-value=19 Score=30.57 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=21.8
Q ss_pred EcEEEEEeCCCceeEEEcCCcEEEEcCC
Q 031109 120 EGKVKVYPDGSNEGVEIGAGDLVVFPKG 147 (165)
Q Consensus 120 EG~vtVt~dgG~e~v~i~AGDlv~fPkG 147 (165)
-|+..|.+.-|+-.+.+-|||+|.+|.-
T Consensus 132 GGeLVv~dtYg~h~VklPAGdLVlypSt 159 (229)
T COG3128 132 GGELVVNDTYGNHRVKLPAGDLVLYPST 159 (229)
T ss_pred CceEEEeccccceEEeccCCCEEEcccc
Confidence 3666677766656899999999999953
No 110
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=48.25 E-value=29 Score=23.02 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCceEEEEEEcEEEEEeCC--C--ceeEEEcCCcEEEE
Q 031109 111 SDKETCYLLEGKVKVYPDG--S--NEGVEIGAGDLVVF 144 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dg--G--~e~v~i~AGDlv~f 144 (165)
..+.+.+|++|.+.+...+ | .....+.+||.+-.
T Consensus 34 ~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 34 PADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred CCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 3578999999999987644 2 12445778888755
No 111
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=44.91 E-value=37 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=18.5
Q ss_pred ceEEEEEEcEEEEEeCCCceeEEEcCCcEEEE
Q 031109 113 KETCYLLEGKVKVYPDGSNEGVEIGAGDLVVF 144 (165)
Q Consensus 113 dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~f 144 (165)
--+..|..|...+.+.+ ...+++||.+++
T Consensus 28 ~~i~~i~R~~~~~~p~~---~~~l~~gD~l~v 56 (71)
T PF02080_consen 28 VRIVAIKRGGEIIIPDG---DTVLQAGDILIV 56 (71)
T ss_dssp EEEEEEEETEEEES--T---T-BE-TTEEEEE
T ss_pred EEEEEEEECCEEECCCC---CCEECCCCEEEE
Confidence 45667778866666655 378999999986
No 112
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=44.67 E-value=36 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.0
Q ss_pred EcEEEEEeCCCceeEEEcCCcEEE
Q 031109 120 EGKVKVYPDGSNEGVEIGAGDLVV 143 (165)
Q Consensus 120 EG~vtVt~dgG~e~v~i~AGDlv~ 143 (165)
+|.+.|..++| ....+.+||+..
T Consensus 25 ~G~L~v~~~~g-~~~~i~sGdv~~ 47 (48)
T PF02237_consen 25 DGALLVRTEDG-SIRTISSGDVSL 47 (48)
T ss_dssp TSEEEEEETTE-EEEEESSSEEEE
T ss_pred CCEEEEEECCC-CEEEEEEEEEEe
Confidence 47777888888 578899999763
No 113
>PRK09774 fec operon regulator FecR; Reviewed
Probab=41.17 E-value=94 Score=26.93 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.3
Q ss_pred eeeee-CCCceEEEEEEcEEEEEeCCC-ceeEEEcCCcEEEEcCC
Q 031109 105 KFPWT-YSDKETCYLLEGKVKVYPDGS-NEGVEIGAGDLVVFPKG 147 (165)
Q Consensus 105 ~f~w~-y~~dE~~yVLEG~vtVt~dgG-~e~v~i~AGDlv~fPkG 147 (165)
.|... ++..--.-|+||.|.|...++ .....+.||+.+.|..+
T Consensus 183 ~F~V~~~~~~~~V~V~eG~V~v~~~~~~~~~~~L~~Gq~~~~~~~ 227 (319)
T PRK09774 183 EFTVRQQDNFTQLAVQQHAVEVLLASAPAQKRIVNAGESLQFSAS 227 (319)
T ss_pred EEEEEEcCCCceEEEEEEEEEEEECCCCCcceEECCCcEEEEcCC
Confidence 45543 443334678999999987542 13577999999999765
No 114
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.82 E-value=46 Score=31.76 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=26.2
Q ss_pred CceEEEEEEcEEEEEeCCC-ceeEEEcCCcEE
Q 031109 112 DKETCYLLEGKVKVYPDGS-NEGVEIGAGDLV 142 (165)
Q Consensus 112 ~dE~~yVLEG~vtVt~dgG-~e~v~i~AGDlv 142 (165)
..|++.|-+|.+.|..||| +.-++++||+.|
T Consensus 348 gkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 348 GKEMYIVKEGKLAVVADDGVTVFVTLKAGSVF 379 (536)
T ss_pred cceEEEEEccEEEEEecCCcEEEEEecCCcee
Confidence 5899999999999998887 445789999865
No 115
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=40.61 E-value=23 Score=25.25 Aligned_cols=19 Identities=42% Similarity=0.481 Sum_probs=12.9
Q ss_pred eEEEcCCcEEEEcCCCEEE
Q 031109 133 GVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~~~t 151 (165)
.+..++||+++||..+...
T Consensus 67 ~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 67 IVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE---TTEEEEEETTSEEE
T ss_pred EeCCCCCEEEEeCCCCEEe
Confidence 4667899999999887654
No 116
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=40.22 E-value=41 Score=28.85 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=45.3
Q ss_pred cccceeeeeEEecCCCcchhhhcccccCCCCcccCCCCeeecccccccccc-----eeeE-EEecCCcee----eeeCCC
Q 031109 43 TTTIEKLGVKIERNPPESKLTELGVRQWPKHCHTGGQPRVLPSKKTHLEAI-----WRIL-RWGCPPSKF----PWTYSD 112 (165)
Q Consensus 43 ~~~~~~~~i~ie~~ps~~~l~~lGv~~Wp~~~~~~G~P~~~~~~~~~~~~~-----~~~G-iWe~~pg~f----~w~y~~ 112 (165)
+++...+..++- .|++.+...+|...|- +..+.+-+++. +.+| ++ ..+|.| |+..+.
T Consensus 107 apa~~~~p~~~i-~~~dv~~~~~G~~~~~-----------R~V~~~i~~~~~~~~~Lv~get~-~~~G~WsSyPPH~Hd~ 173 (261)
T PF04962_consen 107 APAHRDYPPRLI-TPEDVPVEIRGAGNNS-----------RTVRNIIDPNVPPASRLVVGETI-TPGGNWSSYPPHKHDR 173 (261)
T ss_dssp EE-SS----EEE--TTTSEEEEESSGGGT-----------EEEEEEESTTT---SS-EEEEEE-ETTT-EES-SEEE-CC
T ss_pred cccCCCCCCEEE-CHHHCCeEEecCCCCc-----------EEEEEeeCCCCcccceEEEEEEE-eCCCccCCcCCccCCC
Confidence 444455555544 4666667777776553 23333332222 3345 34 555554 233444
Q ss_pred ---------ceEEEEE-E---cEEE--EEeCC--CceeEEEcCCcEEEEcCCCE
Q 031109 113 ---------KETCYLL-E---GKVK--VYPDG--SNEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 113 ---------dE~~yVL-E---G~vt--Vt~dg--G~e~v~i~AGDlv~fPkG~~ 149 (165)
+|+.|.- . |-+. +..++ .++.+.++-||+|.+|.|+-
T Consensus 174 ~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~gyH 227 (261)
T PF04962_consen 174 RMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSGYH 227 (261)
T ss_dssp EEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTTB-
T ss_pred cCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCCCC
Confidence 5666652 1 3332 22222 24578899999999999953
No 117
>PLN02868 acyl-CoA thioesterase family protein
Probab=39.69 E-value=53 Score=29.39 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=30.5
Q ss_pred EecCCceeeee--CCCceEEEEEEcEEEEEeCC--Cce-eEEEcCCcEEEE
Q 031109 99 WGCPPSKFPWT--YSDKETCYLLEGKVKVYPDG--SNE-GVEIGAGDLVVF 144 (165)
Q Consensus 99 We~~pg~f~w~--y~~dE~~yVLEG~vtVt~dg--G~e-~v~i~AGDlv~f 144 (165)
-...++..-+. -..+.+++|++|+|+|...+ |.. ...+++||.|-.
T Consensus 34 ~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 34 KRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred EEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 45556665443 35688999999999986633 311 234689998763
No 118
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=38.01 E-value=61 Score=28.13 Aligned_cols=37 Identities=19% Similarity=0.017 Sum_probs=29.1
Q ss_pred EEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEce
Q 031109 116 CYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 116 ~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~e 156 (165)
+.+-|-++.|+..+| +.+.+.|||++++-+.- |.+..
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~---~~~~~ 46 (274)
T PRK09978 10 IAYARHKYILTMVNG-EYRYFNGGDLVFADASQ---IRVDK 46 (274)
T ss_pred EEEEcceEEEEEcCC-ceeEecCCcEEEEeccc---ccccc
Confidence 344578899999999 79999999999997764 44443
No 119
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=38.01 E-value=24 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=23.3
Q ss_pred EEEEEcE---EEEEeCCCceeEEEcCCcEEEEc
Q 031109 116 CYLLEGK---VKVYPDGSNEGVEIGAGDLVVFP 145 (165)
Q Consensus 116 ~yVLEG~---vtVt~dgG~e~v~i~AGDlv~fP 145 (165)
-|+++|+ -.|...|. ....+.+||.|++-
T Consensus 56 TYvI~g~~gSg~I~lNGA-AAr~~~~GD~vII~ 87 (111)
T cd06919 56 TYVIPGERGSGVICLNGA-AARLGQPGDRVIIM 87 (111)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEE
Confidence 4777776 77888877 58999999999874
No 120
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=36.96 E-value=68 Score=25.55 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCceEEEEEEcEEEEEe--CCCce-eEE-EcCCcEEEE
Q 031109 111 SDKETCYLLEGKVKVYP--DGSNE-GVE-IGAGDLVVF 144 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~--dgG~e-~v~-i~AGDlv~f 144 (165)
..+.+.+|++|.+.+.. ++|.+ .+. +.+||++-.
T Consensus 54 ~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 54 ELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred CcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 35788999999998774 34533 222 589999854
No 121
>PHA02872 EFc gene family protein; Provisional
Probab=36.58 E-value=39 Score=26.22 Aligned_cols=44 Identities=27% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCceEEEEEEcEEEEE--------eCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 111 SDKETCYLLEGKVKVY--------PDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt--------~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
...--+|.|||+.-+. +++..+.--+..|+.|-|-.|+.|--.+
T Consensus 59 gdtvkIYflEGkG~LIfSv~dv~sp~~eedSgyv~eG~~Vef~t~f~C~iTl 110 (124)
T PHA02872 59 GDTVKIYFLEGKGGLIFSVSDVGSPDNEEDSGYVNEGECVEFETDFACFITL 110 (124)
T ss_pred CCeEEEEEEecCCcEEEEEEecCCCCccccccceecccEEEEecCceEEEEE
Confidence 3456689999876542 2222234568999999999999985443
No 122
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=35.95 E-value=50 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 114 ETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 114 E~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
-+-..++|.....+.|+ .+.+.||+.|.++.|.-..|-.
T Consensus 138 ~v~V~~DG~~~t~~aG~--~l~L~PGESiTL~Pg~yH~Fw~ 176 (225)
T PF07385_consen 138 DVTVPVDGIRRTVPAGT--QLRLNPGESITLPPGIYHWFWG 176 (225)
T ss_dssp -EEEEETTEEEEE-TT---EEEE-TT-EEEE-TTEEEEEEE
T ss_pred CeEEecCCcEEEecCCc--eEEeCCCCeEeeCCCCeeeEEe
Confidence 34445556665555554 6788888888888887666654
No 123
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.69 E-value=21 Score=26.99 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=28.4
Q ss_pred EEEEcEEEEEeCCCceeEEEcCCcEEEEc----CCCEEEEEEc
Q 031109 117 YLLEGKVKVYPDGSNEGVEIGAGDLVVFP----KGMSCTWDVS 155 (165)
Q Consensus 117 yVLEG~vtVt~dgG~e~v~i~AGDlv~fP----kG~~~tW~V~ 155 (165)
-||.|+=+||..|.+ .-+|+|||.+.+- .++-|+=+|.
T Consensus 15 dilagrKTITIRD~S-EShf~~g~vlrV~r~Ed~~~fc~I~vl 56 (106)
T COG3097 15 DILAGRKTITIRDKS-ESHFKPGDVLRVGRFEDDRYFCTIEVL 56 (106)
T ss_pred HHhCCCceEEEeccc-hhcCCCCCEEEEEEecCCcEEEEEEEE
Confidence 378999999998874 6899999998763 3445555544
No 124
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=33.50 E-value=25 Score=30.31 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=16.6
Q ss_pred eEEEcCCcEEEEcCCCEEE
Q 031109 133 GVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~~~t 151 (165)
.+.+++||.+++|+|.-..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5889999999999998654
No 125
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=33.42 E-value=82 Score=22.22 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=16.0
Q ss_pred EEEEeCCC--ceeEEEcCCcEEEEcCCC
Q 031109 123 VKVYPDGS--NEGVEIGAGDLVVFPKGM 148 (165)
Q Consensus 123 vtVt~dgG--~e~v~i~AGDlv~fPkG~ 148 (165)
|+|.=.+| .....+.|||.+.|| |+
T Consensus 29 VtV~Y~dG~~~PCrv~~PG~~~Tf~-Gy 55 (68)
T PF01356_consen 29 VTVEYTDGQEVPCRVIPPGDIATFP-GY 55 (68)
T ss_dssp EEEEETTS-CEEEEEE-TTEEEEEE--T
T ss_pred EEEEEeCCCcceeEEeCCCCEEEec-cc
Confidence 34444444 236889999999999 65
No 126
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=33.27 E-value=44 Score=24.37 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=12.3
Q ss_pred eEEEcCCcEEEEcC
Q 031109 133 GVEIGAGDLVVFPK 146 (165)
Q Consensus 133 ~v~i~AGDlv~fPk 146 (165)
+..+++||.|+|++
T Consensus 56 ~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 56 PLDVKVGDKVLFGK 69 (95)
T ss_pred ecccCCCCEEEEcC
Confidence 56799999999996
No 127
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=33.17 E-value=30 Score=27.13 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=23.1
Q ss_pred EEEEEcE---EEEEeCCCceeEEEcCCcEEEEc
Q 031109 116 CYLLEGK---VKVYPDGSNEGVEIGAGDLVVFP 145 (165)
Q Consensus 116 ~yVLEG~---vtVt~dgG~e~v~i~AGDlv~fP 145 (165)
-|++.|+ -.|...|. ....+++||.|.+=
T Consensus 57 TYvI~G~~GSg~I~lNGA-AArl~~~GD~VII~ 88 (126)
T TIGR00223 57 TYAIAGKRGSRIICVNGA-AARCVSVGDIVIIA 88 (126)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEE
Confidence 4777776 77888777 58999999999874
No 128
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=33.06 E-value=31 Score=27.06 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.0
Q ss_pred EEEEEcE---EEEEeCCCceeEEEcCCcEEEEc
Q 031109 116 CYLLEGK---VKVYPDGSNEGVEIGAGDLVVFP 145 (165)
Q Consensus 116 ~yVLEG~---vtVt~dgG~e~v~i~AGDlv~fP 145 (165)
-|+++|+ -.|...|. ....+++||.|.+-
T Consensus 57 TYvI~g~~GSg~I~lNGA-AAr~~~~GD~vII~ 88 (126)
T PRK05449 57 TYVIAGERGSGVICLNGA-AARLVQVGDLVIIA 88 (126)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEE
Confidence 4677766 67888777 68999999999874
No 129
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=32.50 E-value=78 Score=27.31 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=36.8
Q ss_pred ccccccc-eeeEEEecCCceee--ee-CCCceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCC
Q 031109 87 KTHLEAI-WRILRWGCPPSKFP--WT-YSDKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGM 148 (165)
Q Consensus 87 ~~~~~~~-~~~GiWe~~pg~f~--w~-y~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~ 148 (165)
...+.+. ...|+.-+-|.-|. .+ -...|=.|+|+|++.+...+.....++.+|--|.-|++.
T Consensus 162 Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~ 227 (251)
T PF14499_consen 162 LWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHI 227 (251)
T ss_dssp EEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-
T ss_pred EecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCcc
Confidence 3344443 44477777777764 22 467999999999999966544357899999999999983
No 130
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=29.81 E-value=1.2e+02 Score=22.01 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=13.8
Q ss_pred eEEEcCCcEEEEcCCC
Q 031109 133 GVEIGAGDLVVFPKGM 148 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~ 148 (165)
+..++.||.|+||+.-
T Consensus 55 ~~~vk~GD~Vl~~~~~ 70 (93)
T cd00320 55 PLSVKVGDKVLFPKYA 70 (93)
T ss_pred cccccCCCEEEECCCC
Confidence 6789999999999844
No 131
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=28.55 E-value=42 Score=29.93 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.7
Q ss_pred eEEEcCCcEEEEcCCCEEE
Q 031109 133 GVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~~~t 151 (165)
.+.++|||.+++|+|.-..
T Consensus 159 ~v~lkpGe~~fl~Agt~HA 177 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHA 177 (312)
T ss_pred EEecCCCCEEEecCCCcee
Confidence 6899999999999998654
No 132
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.49 E-value=1.1e+02 Score=30.40 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=32.3
Q ss_pred cCCceeeee--CCCceEEEEEEcEEEEEeCCC---ceeEEEcCCcEEE
Q 031109 101 CPPSKFPWT--YSDKETCYLLEGKVKVYPDGS---NEGVEIGAGDLVV 143 (165)
Q Consensus 101 ~~pg~f~w~--y~~dE~~yVLEG~vtVt~dgG---~e~v~i~AGDlv~ 143 (165)
++|+.+-.+ -..+|+.+|..|.+.+...+| .-...+++||.+=
T Consensus 447 f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 447 FTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred cCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 466676554 246999999999999988774 1256799999875
No 133
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=28.17 E-value=1.5e+02 Score=25.45 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred EcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 120 EGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 120 EG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
+..|+|..||- ..++.||..+.+.+|-+.|-.
T Consensus 136 ~~~v~V~~DG~--~~t~~aG~~l~L~PGESiTL~ 167 (225)
T PF07385_consen 136 DTDVTVPVDGI--RRTVPAGTQLRLNPGESITLP 167 (225)
T ss_dssp SS-EEEEETTE--EEEE-TT-EEEE-TT-EEEE-
T ss_pred CCCeEEecCCc--EEEecCCceEEeCCCCeEeeC
Confidence 56777777764 799999999999999998854
No 134
>PHA00672 hypothetical protein
Probab=27.03 E-value=1.4e+02 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=29.9
Q ss_pred eEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEE
Q 031109 114 ETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWD 153 (165)
Q Consensus 114 E~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~ 153 (165)
|.+.|++|+.+|..|++ .+++.+=-.+.=|+|.+-..-
T Consensus 68 ~~~ii~sG~itV~tdge--~~rl~g~~~i~~~aG~Kragy 105 (152)
T PHA00672 68 STVLIFSGHATVFIGGE--AVELRGYHVIPASAGRKQAFV 105 (152)
T ss_pred eEEEEecccEEEEeCCc--EEEEecceeeecCCCccccee
Confidence 44599999999999954 789988888888888764433
No 135
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=26.97 E-value=1e+02 Score=21.74 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.8
Q ss_pred eeEEEcCCcEEEEcCCCE
Q 031109 132 EGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 132 e~v~i~AGDlv~fPkG~~ 149 (165)
..+.+.|||+..|| |+-
T Consensus 41 pCr~~~PG~~~Tf~-GYg 57 (69)
T smart00783 41 PCRTAAPGDITTFG-GYG 57 (69)
T ss_pred eeEeeCCCCEEEec-ccc
Confidence 57899999999999 764
No 136
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=26.36 E-value=53 Score=27.99 Aligned_cols=43 Identities=26% Similarity=0.506 Sum_probs=28.0
Q ss_pred CceEEEEEEcEEEEEeCCCceeEEEc--C-----CcE--------EEEcCCCEEEEEEce
Q 031109 112 DKETCYLLEGKVKVYPDGSNEGVEIG--A-----GDL--------VVFPKGMSCTWDVSV 156 (165)
Q Consensus 112 ~dE~~yVLEG~vtVt~dgG~e~v~i~--A-----GDl--------v~fPkG~~~tW~V~e 156 (165)
+|=--.++||.+.|+..+| ..++. + ||. .+||.+..++|+..-
T Consensus 15 ~dv~~w~~eG~~~~t~~~~--~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~~i~IsweF~p 72 (218)
T PF09224_consen 15 ADVADWVAEGPAKVTFQNG--RMELSGELDPEQFGDAAHFVLWCPEVFPDDIRISWEFTP 72 (218)
T ss_dssp GGGTT-EEEESEEEE-GGG--SEEEE------ESSTT--EEEE-SS-B-SSEEEEEEEEE
T ss_pred HHhhhhhccCCeEEeecCC--cEEEeeeeccccccccccEEEECcccCCCCeEEEEEEEE
Confidence 3444468899999999887 47766 3 221 468999999999753
No 137
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=25.99 E-value=53 Score=29.80 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=15.6
Q ss_pred eEEEcCCcEEEEcCCCEEE
Q 031109 133 GVEIGAGDLVVFPKGMSCT 151 (165)
Q Consensus 133 ~v~i~AGDlv~fPkG~~~t 151 (165)
.+.+++||.+++|+|.-..
T Consensus 238 ~v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEEeCCCCEEEeCCCCCeE
Confidence 5889999999999997543
No 138
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=25.97 E-value=97 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=18.7
Q ss_pred EcEEEEEeCCC-ceeEEEcCCcEEEEcCC
Q 031109 120 EGKVKVYPDGS-NEGVEIGAGDLVVFPKG 147 (165)
Q Consensus 120 EG~vtVt~dgG-~e~v~i~AGDlv~fPkG 147 (165)
+|+|.-.-+|. ..+..+++||.|+||+-
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y 74 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLPEF 74 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEcCC
Confidence 56665444432 12678999999999963
No 139
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=1.2e+02 Score=25.49 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=36.5
Q ss_pred CCceEEEEEEcE-EEEEeCCCceeEEEcCCcEEEEcCCCEEEEEE
Q 031109 111 SDKETCYLLEGK-VKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDV 154 (165)
Q Consensus 111 ~~dE~~yVLEG~-vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V 154 (165)
..|-+.-+|||. .++..+|....+...+.+.+.||....+.=..
T Consensus 59 GidR~lsvLeG~gm~L~~~~~~~~~l~~~~qp~aF~gD~~v~a~L 103 (193)
T COG3758 59 GIDRILSVLEGGGMTLSSAGRAPVVLLRPLQPFAFAGDVPVHARL 103 (193)
T ss_pred CcceEEEEEecCceEEecCCCccceecCCCCcccccCCceEEEEE
Confidence 579999999999 99999985467889999999999996554333
No 140
>PHA00663 hypothetical protein
Probab=25.89 E-value=62 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCEEEEEEce
Q 031109 138 AGDLVVFPKGMSCTWDVSV 156 (165)
Q Consensus 138 AGDlv~fPkG~~~tW~V~e 156 (165)
.||.|-+|.|-..+|-+..
T Consensus 17 ~gdvFdvpdg~kaSWfvpA 35 (68)
T PHA00663 17 PGDKFDVPDGAKASWFAPA 35 (68)
T ss_pred cCceeecCCCCeeeeEeeh
Confidence 8999999999999998864
No 141
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=25.82 E-value=1.2e+02 Score=24.17 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=22.5
Q ss_pred CCceEEEEEEcEEEEEe--CCCc-eeEEEcCCcEEE
Q 031109 111 SDKETCYLLEGKVKVYP--DGSN-EGVEIGAGDLVV 143 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~--dgG~-e~v~i~AGDlv~ 143 (165)
..+.+++|++|.+.+.. +|+. .-..+.+||.+-
T Consensus 47 ~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 47 PADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred ccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 45889999999999864 3331 123477888763
No 142
>PRK04980 hypothetical protein; Provisional
Probab=25.44 E-value=32 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.5
Q ss_pred EEEEcEEEEEeCCCceeEEEcCCcEEEEc
Q 031109 117 YLLEGKVKVYPDGSNEGVEIGAGDLVVFP 145 (165)
Q Consensus 117 yVLEG~vtVt~dgG~e~v~i~AGDlv~fP 145 (165)
.||+|+=++|--++ ..-++++||.+.+-
T Consensus 14 ~ILsGkKTiTiRd~-se~~~~~G~~~~V~ 41 (102)
T PRK04980 14 DILAGRKTITIRDE-SESHFKPGDVLRVG 41 (102)
T ss_pred HHHcCCceEEeeCC-cccCCCCCCEEEEE
Confidence 37899999998777 46899999999984
No 143
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=24.56 E-value=37 Score=25.78 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=9.7
Q ss_pred EEcCCcEEEEc
Q 031109 135 EIGAGDLVVFP 145 (165)
Q Consensus 135 ~i~AGDlv~fP 145 (165)
.+++||+|+|-
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 47999999995
No 144
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=24.34 E-value=2.6e+02 Score=20.30 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=17.8
Q ss_pred EcEEEEEeCCC-ceeEEEcCCcEEEEcC
Q 031109 120 EGKVKVYPDGS-NEGVEIGAGDLVVFPK 146 (165)
Q Consensus 120 EG~vtVt~dgG-~e~v~i~AGDlv~fPk 146 (165)
+|.|.-.-.+. .++..+++||.|+|++
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEcc
Confidence 55554433321 1367899999999997
No 145
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=23.85 E-value=35 Score=24.35 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEEcEEEEEeCCCc-eeEEEcCCcEEEEcC
Q 031109 116 CYLLEGKVKVYPDGSN-EGVEIGAGDLVVFPK 146 (165)
Q Consensus 116 ~yVLEG~vtVt~dgG~-e~v~i~AGDlv~fPk 146 (165)
.+|.||.|.|..+-.+ ....+..||.|.||-
T Consensus 32 ~~i~eg~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 32 AFIAEGEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred HHHHCCeEEECCeeeeccCCEeecCCEEEECC
Confidence 4577888877543221 235699999999985
No 146
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=23.53 E-value=90 Score=27.31 Aligned_cols=26 Identities=38% Similarity=0.799 Sum_probs=19.1
Q ss_pred EEEeCCC--ceeEEEcCCcEEEEcCCCE
Q 031109 124 KVYPDGS--NEGVEIGAGDLVVFPKGMS 149 (165)
Q Consensus 124 tVt~dgG--~e~v~i~AGDlv~fPkG~~ 149 (165)
+|..|++ .|++.+.-||+|++|+|+-
T Consensus 203 RVYTddrsLDEtmaV~~~dvvlVP~GYH 230 (270)
T COG3718 203 RVYTDDRSLDETMAVENGDVVLVPKGYH 230 (270)
T ss_pred EEEcCCCcccceeeeecCCEEEecCCcC
Confidence 3444444 4578899999999999973
No 147
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=44 Score=32.07 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=35.8
Q ss_pred EEecCCce--eeeeCCC-ceEEEEEEcEEEEE---------------e-----CC-CceeE---EEcCCcEEEEcCCCEE
Q 031109 98 RWGCPPSK--FPWTYSD-KETCYLLEGKVKVY---------------P-----DG-SNEGV---EIGAGDLVVFPKGMSC 150 (165)
Q Consensus 98 iWe~~pg~--f~w~y~~-dE~~yVLEG~vtVt---------------~-----dg-G~e~v---~i~AGDlv~fPkG~~~ 150 (165)
++-..|+. |+=||+. +-|..=|||+=.-. . ++ | +++ .+.|||++.||.|+-.
T Consensus 321 vYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlg-ePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLG-EPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred eeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhC-CchHHhhcCCCcEEEecCccee
Confidence 45555554 6657764 55556678864321 1 11 3 344 3899999999999976
Q ss_pred EEEEce
Q 031109 151 TWDVSV 156 (165)
Q Consensus 151 tW~V~e 156 (165)
.=+..+
T Consensus 400 QA~t~~ 405 (629)
T KOG3706|consen 400 QADTPA 405 (629)
T ss_pred eccccc
Confidence 655444
No 148
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=23.24 E-value=41 Score=27.69 Aligned_cols=14 Identities=43% Similarity=0.843 Sum_probs=11.4
Q ss_pred EEEcCCcEEEEcCC
Q 031109 134 VEIGAGDLVVFPKG 147 (165)
Q Consensus 134 v~i~AGDlv~fPkG 147 (165)
-++++||+|+|..|
T Consensus 127 ~~lqpGDLVfF~~~ 140 (190)
T PRK10838 127 SKLRTGDLVLFRAG 140 (190)
T ss_pred CCCCCCcEEEECCC
Confidence 35799999999855
No 149
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=22.48 E-value=53 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCceEEEEEEcEEEEEeCCCceeEEEcCCcEE
Q 031109 111 SDKETCYLLEGKVKVYPDGSNEGVEIGAGDLV 142 (165)
Q Consensus 111 ~~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv 142 (165)
..++++.|.+|+|-+....++-.+.+++||.|
T Consensus 280 ~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyf 311 (368)
T KOG1113|consen 280 QGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYF 311 (368)
T ss_pred CcceEEEecccccchhhccCCeEEEechhhhc
Confidence 67899999999999988765345678888875
No 150
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=22.33 E-value=21 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcEE---EEEeCCCceeEEEcCCcEEEEc
Q 031109 116 CYLLEGKV---KVYPDGSNEGVEIGAGDLVVFP 145 (165)
Q Consensus 116 ~yVLEG~v---tVt~dgG~e~v~i~AGDlv~fP 145 (165)
-|+++|+- .|...|. ....+++||.|++=
T Consensus 57 TYvI~g~~GSg~I~lNGa-AArl~~~GD~vII~ 88 (116)
T PF02261_consen 57 TYVIPGERGSGVICLNGA-AARLVQVGDRVIIM 88 (116)
T ss_dssp EEEEEESTTTT-EEEEGG-GGGCS-TT-EEEEE
T ss_pred EEEEEccCCCcEEEECCH-HHhccCCCCEEEEE
Confidence 47777764 6777776 57899999999873
No 151
>COG4579 Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]
Probab=22.09 E-value=48 Score=31.23 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=27.5
Q ss_pred eCCCceEEEEEEcEEEEEeCC--------CceeEEEcCCcEEEEcCCCEE
Q 031109 109 TYSDKETCYLLEGKVKVYPDG--------SNEGVEIGAGDLVVFPKGMSC 150 (165)
Q Consensus 109 ~y~~dE~~yVLEG~vtVt~dg--------G~e~v~i~AGDlv~fPkG~~~ 150 (165)
-|++||+||+.|=.++-.|.- ++.=+.++|+|+ ||.-+..
T Consensus 473 FYDYDEIcYlTevNfRdiP~PR~pEdEMssEpWYSV~P~Dv--FPeef~~ 520 (578)
T COG4579 473 FYDYDEICYMTEVNFRDIPPPRYPEDEMASEPWYSVSPGDV--FPEEFRH 520 (578)
T ss_pred EeeccceeeeeecccccCCCCCCchhhhccCCceecCCCcc--Chhhccc
Confidence 389999999998887766542 212366889985 5655443
No 152
>KOG4143 consensus Sigma receptor and C-8 sterol isomerase [Signal transduction mechanisms]
Probab=21.65 E-value=65 Score=27.04 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=37.1
Q ss_pred CceEEEEEEcEEEEEeCCCceeEEEcCCcEEEEcCCCEEEEEEc
Q 031109 112 DKETCYLLEGKVKVYPDGSNEGVEIGAGDLVVFPKGMSCTWDVS 155 (165)
Q Consensus 112 ~dE~~yVLEG~vtVt~dgG~e~v~i~AGDlv~fPkG~~~tW~V~ 155 (165)
.|..+.||.|+-.-..++..|...+-|||..+-|+|.....+..
T Consensus 120 AddyfTIl~Gtq~aa~~~~teaeVy~PG~thvh~~G~a~qysmp 163 (218)
T KOG4143|consen 120 ADDYFTILSGTQHAAREGTTEAEVYYPGETHVHGPGEATQYSMP 163 (218)
T ss_pred hhhhhhhhccceecccCCCccceEEcCCcceecCCccceeeccC
Confidence 47788999999998888877788899999999999987665543
No 153
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.80 E-value=1.4e+02 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=27.5
Q ss_pred cCCceeeee--CCCceEEEEEEcEEEEEeCC-Cce--eEEEcCCcEE
Q 031109 101 CPPSKFPWT--YSDKETCYLLEGKVKVYPDG-SNE--GVEIGAGDLV 142 (165)
Q Consensus 101 ~~pg~f~w~--y~~dE~~yVLEG~vtVt~dg-G~e--~v~i~AGDlv 142 (165)
..|+..-+. -..+++++|++|+|.+...+ +++ -..+++||.|
T Consensus 402 ~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 402 IPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred eCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 445554333 23588999999999987533 322 2358999976
No 154
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=20.44 E-value=40 Score=32.51 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=25.9
Q ss_pred eCCCceEEEEEEcEEEEEeCC--------CceeEEEcCCcEE
Q 031109 109 TYSDKETCYLLEGKVKVYPDG--------SNEGVEIGAGDLV 142 (165)
Q Consensus 109 ~y~~dE~~yVLEG~vtVt~dg--------G~e~v~i~AGDlv 142 (165)
-||+||+||+.|=.++-.|.- ++.-+.++++|+|
T Consensus 474 FYDYDEI~ylTd~nFR~iP~pr~~e~ems~epWysVgp~DVF 515 (575)
T PRK02946 474 FYDYDEICYLTECNFRDIPPPRYPEDEMSSEPWYSVGPGDVF 515 (575)
T ss_pred EecccceeeecccccccCCCCCChhHhhccCCCcccCCCCcC
Confidence 389999999999888877754 2124778888865
Done!