BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031110
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRAR
FIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQA
GNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV

High Scoring Gene Products

Symbol, full name Information P value
DAC
AT3G17930 		protein from Arabidopsis thaliana 1.8e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031110
        (165 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088540 - symbol:DAC "AT3G17930" species:3702 ...   289  1.8e-25   1


>TAIR|locus:2088540 [details] [associations]
            symbol:DAC "AT3G17930" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0000023 "maltose metabolic process"
            evidence=RCA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0034660 "ncRNA metabolic
            process" evidence=RCA] [GO:0043085 "positive regulation of
            catalytic activity" evidence=RCA] [GO:0010190 "cytochrome b6f
            complex assembly" evidence=IMP] EMBL:CP002686 GO:GO:0009535
            GO:GO:0010190 UniGene:At.8042 EMBL:AY039550 EMBL:AY093751
            IPI:IPI00539031 RefSeq:NP_566593.1 UniGene:At.71140 IntAct:Q94BY7
            STRING:Q94BY7 PRIDE:Q94BY7 EnsemblPlants:AT3G17930.1 GeneID:819775
            KEGG:ath:AT3G17930 InParanoid:Q94BY7 OMA:LGWISTY
            ProtClustDB:CLSN2688507 Genevestigator:Q94BY7 InterPro:IPR021562
            Pfam:PF11460 Uniprot:Q94BY7
        Length = 190

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 69/137 (50%), Positives = 79/137 (57%)

Query:    32 GVISKSLYKKEA---SLFPRKGSKKLISDRARFIIPRXXXXXXXXXXXXXXQTET-PFGY 87
             G   K LY+ E    S    KG K+    R R    R              +T+T PFGY
Sbjct:    35 GAAKKVLYRFEGHRLSSSVEKGEKQ----RMRC---RVSSNSTETEDDSATKTKTTPFGY 87

Query:    88 TRKDXXXXXXXXXXXXXXXKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK 147
             TRKD               +SGLE  GVDPLQAGN V++I+VLGLTLGW+STYIFRV NK
Sbjct:    88 TRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLTLGWISTYIFRVGNK 147

Query:   148 EMTYAQQLRDYEDKVMQ 164
             EMTYAQQLRDYE +VMQ
Sbjct:   148 EMTYAQQLRDYESQVMQ 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       136   0.00091  102 3  11 22  0.40    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.83u 0.13s 9.96t   Elapsed:  00:00:00
  Total cpu time:  9.83u 0.13s 9.96t   Elapsed:  00:00:00
  Start:  Fri May 10 11:26:50 2013   End:  Fri May 10 11:26:50 2013

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