BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031110
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5EW54|ALR_DICNV Alanine racemase OS=Dichelobacter nodosus (strain VCS1703A) GN=alr
           PE=3 SV=1
          Length = 357

 Score = 33.5 bits (75), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 15  ANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNG 74
           A +F    +LP+ +  +GVI+      E  L     +KK ++   R ++P       +N 
Sbjct: 136 AEAFAQAHSLPVNIQWQGVITHFACSDEDDL---THAKKQLACMDRLVLPAHWKRCYANS 192

Query: 75  SDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLE 111
           +      +  + YTR  ++L G+   + G G   GL+
Sbjct: 193 AAIFALPQAHYDYTRSGIMLYGLSPFMHGDGSAYGLQ 229


>sp|Q7Z4K8|TRI46_HUMAN Tripartite motif-containing protein 46 OS=Homo sapiens GN=TRIM46
           PE=2 SV=2
          Length = 759

 Score = 30.8 bits (68), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 62  IIPRSSGSS--NSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 119
           I PR    S  +S   D++ +   PF +     L IG+G  ++G G  S   L G D   
Sbjct: 626 ISPRYDPDSGHDSGAEDATVEASPPFAF-----LTIGMGKILLGSGASSNAGLTGRDGPT 680

Query: 120 AGNVVEVIVVLGLTLGW 136
           AG  V +   LG+ L +
Sbjct: 681 AGCTVPLPPRLGICLDY 697


>sp|P42687|SPK1_DUGTI Tyrosine-protein kinase SPK-1 OS=Dugesia tigrina PE=2 SV=1
          Length = 497

 Score = 30.4 bits (67), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 130 LGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDK 161
           +GL  G   TYI R S KE +YA  +RD+++K
Sbjct: 117 IGLQKG---TYIIRPSRKENSYALSVRDFDEK 145


>sp|Q5Z1H8|GLMM_NOCFA Phosphoglucosamine mutase OS=Nocardia farcinica (strain IFM 10152)
           GN=glmM PE=3 SV=1
          Length = 458

 Score = 29.6 bits (65), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 96  GVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS 138
           G    V+G G    L L G DP  +G ++E  V  GLT   V+
Sbjct: 28  GAAAQVLGRGKTRALALVGRDPRASGEMLEAAVTAGLTAAGVN 70


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,400,209
Number of Sequences: 539616
Number of extensions: 2335160
Number of successful extensions: 6852
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6846
Number of HSP's gapped (non-prelim): 16
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)