Query 031110
Match_columns 165
No_of_seqs 75 out of 77
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 09:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11460 DUF3007: Protein of u 100.0 2.3E-40 4.9E-45 251.2 4.5 75 87-162 1-75 (104)
2 PF12576 DUF3754: Protein of u 90.3 0.2 4.2E-06 39.0 2.1 71 85-163 57-128 (141)
3 PRK03557 zinc transporter ZitB 71.4 5.7 0.00012 33.9 3.8 33 81-113 77-113 (312)
4 PF12666 PrgI: PrgI family pro 66.3 11 0.00024 26.6 3.9 34 80-114 10-44 (93)
5 TIGR01297 CDF cation diffusion 65.4 15 0.00033 29.4 5.0 23 81-103 48-73 (268)
6 PF05915 DUF872: Eukaryotic pr 64.2 18 0.00039 27.9 4.9 44 90-136 41-87 (115)
7 PF11003 DUF2842: Protein of u 63.2 7.3 0.00016 27.3 2.4 45 94-138 3-49 (62)
8 PF07895 DUF1673: Protein of u 51.1 24 0.00052 29.2 3.9 12 151-162 100-111 (205)
9 PF05961 Chordopox_A13L: Chord 49.8 16 0.00034 26.8 2.4 22 90-111 3-24 (68)
10 PRK09509 fieF ferrous iron eff 49.5 32 0.00069 28.9 4.5 14 81-94 69-82 (299)
11 PLN03094 Substrate binding sub 47.6 26 0.00057 31.9 4.0 25 84-108 75-99 (370)
12 PF07226 DUF1422: Protein of u 45.5 29 0.00062 27.7 3.4 45 93-139 65-109 (117)
13 cd03381 PAP2_glucose_6_phospha 44.4 25 0.00054 29.9 3.2 32 88-119 160-191 (235)
14 PF06814 Lung_7-TM_R: Lung sev 42.0 19 0.00042 30.1 2.1 70 88-161 150-225 (295)
15 PRK11056 hypothetical protein; 37.6 51 0.0011 26.4 3.7 45 93-139 65-109 (120)
16 PHA03049 IMV membrane protein; 37.3 33 0.0007 25.2 2.4 22 90-111 3-24 (68)
17 PF07835 COX4_pro_2: Bacterial 34.9 27 0.00059 23.0 1.6 15 146-160 6-20 (44)
18 PRK14748 kdpF potassium-transp 34.3 43 0.00094 21.1 2.3 25 87-111 1-25 (29)
19 PF04156 IncA: IncA protein; 34.1 47 0.001 25.8 3.0 38 94-132 13-50 (191)
20 PF07256 DUF1435: Protein of u 33.8 46 0.001 24.8 2.8 46 96-158 9-55 (78)
21 PF06305 DUF1049: Protein of u 33.4 19 0.00042 23.6 0.7 25 119-143 19-43 (68)
22 PLN02220 delta-9 acyl-lipid de 31.8 72 0.0016 28.2 4.1 23 76-98 14-39 (299)
23 TIGR02838 spore_V_AC stage V s 28.6 65 0.0014 26.2 3.1 51 80-130 11-62 (141)
24 PF13687 DUF4153: Domain of un 28.4 48 0.001 26.8 2.3 67 84-160 150-216 (217)
25 PF01545 Cation_efflux: Cation 27.4 88 0.0019 25.1 3.6 31 81-111 57-88 (284)
26 PF13807 GNVR: G-rich domain o 27.0 1.1E+02 0.0025 21.1 3.7 36 76-111 45-80 (82)
27 PF06295 DUF1043: Protein of u 27.0 16 0.00035 28.0 -0.7 37 126-162 4-48 (128)
28 TIGR03348 VI_IcmF type VI secr 25.5 40 0.00086 34.3 1.6 50 95-144 2-53 (1169)
29 MTH00046 CYTB cytochrome b; Va 24.8 92 0.002 28.3 3.6 43 63-105 190-234 (355)
30 PF10661 EssA: WXG100 protein 24.7 76 0.0017 25.3 2.8 18 95-112 125-142 (145)
31 PF02468 PsbN: Photosystem II 23.6 70 0.0015 21.5 2.0 26 90-115 4-29 (43)
32 COG1230 CzcD Co/Zn/Cd efflux s 22.8 93 0.002 27.7 3.2 62 83-145 82-148 (296)
33 PF12180 EABR: TSG101 and ALIX 22.4 53 0.0012 21.4 1.2 14 149-162 15-28 (35)
34 COG0053 MMT1 Predicted Co/Zn/C 21.8 92 0.002 27.0 2.9 66 81-146 71-142 (304)
35 PRK13183 psbN photosystem II r 21.2 57 0.0012 22.3 1.2 29 87-115 4-32 (46)
36 PHA01080 hypothetical protein 21.0 46 0.00099 25.1 0.8 32 109-140 38-69 (80)
37 TIGR00439 ftsX putative protei 20.4 89 0.0019 27.1 2.6 16 126-141 282-297 (309)
38 PRK11901 hypothetical protein; 20.1 1.1E+02 0.0024 28.0 3.1 14 47-60 6-19 (327)
No 1
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=100.00 E-value=2.3e-40 Score=251.23 Aligned_cols=75 Identities=53% Similarity=0.872 Sum_probs=74.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHHHHhh
Q 031110 87 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV 162 (165)
Q Consensus 87 MtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~AV 162 (165)
|||+|||+||+++|++|+++|++||++|+|+++||||||++||+|+ |+|++||+|||+||||||||||||||+||
T Consensus 1 MtR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~gl-vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~ 75 (104)
T PF11460_consen 1 MTRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGL-VGWVSSYLFRVVTGKMTYMQQRKDYEEAV 75 (104)
T ss_pred CcccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH-HHHHhHHHhhhccCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988 99999999999999999999999999999
No 2
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=90.32 E-value=0.2 Score=38.98 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=43.6
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHH-HHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHHHHhhh
Q 031110 85 FGYTRKDVLLIGVGVTVIGYGLKSG-LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVM 163 (165)
Q Consensus 85 FgMtR~DVI~IGlgvfl~Gg~lY~g-Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~AVm 163 (165)
=.||-.|-+.+++.+.+.|+....- .....+.......+.-+.+ ++=+++|.+|+.+ +|.+|+.+|+..+-
T Consensus 57 v~~~~~D~~~l~~~~vvg~v~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~r~~~---~~~~~~~ry~~~l~ 128 (141)
T PF12576_consen 57 VRMRPFDRVKLGVSAVVGGVAVFVKLVGMSLLLLSDIFLILILSL-----LSALGGYAFRQYT---GYKNNRARYQLLLT 128 (141)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4789999999888777766554443 2222222222222222222 2334678899985 89999999997653
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=71.36 E-value=5.7 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=21.0
Q ss_pred CCCCccccchhh---hhhhHHHHHHHHHH-HHHHHHh
Q 031110 81 TETPFGYTRKDV---LLIGVGVTVIGYGL-KSGLELF 113 (165)
Q Consensus 81 ~~~pFgMtR~DV---I~IGlgvfl~Gg~l-Y~gLq~~ 113 (165)
++-|||+.|... +..|+.++++|+.+ |-..+.+
T Consensus 77 ~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l 113 (312)
T PRK03557 77 IRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERF 113 (312)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999994 45566666555433 3355544
No 4
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=66.29 E-value=11 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCCCCccccchhhhhhhHHHHHHHHHHHH-HHHHhC
Q 031110 80 QTETPFGYTRKDVLLIGVGVTVIGYGLKS-GLELFG 114 (165)
Q Consensus 80 ~~~~pFgMtR~DVI~IGlgvfl~Gg~lY~-gLq~~G 114 (165)
|+|.=||+|-...+.+++++.++.+ .|. ....+|
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~-~~~~~~~~l~ 44 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVG-VYLLLWFFLG 44 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 6778889999999999988888664 444 444555
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=65.44 E-value=15 Score=29.39 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=14.7
Q ss_pred CCCCccccchhhh---hhhHHHHHHH
Q 031110 81 TETPFGYTRKDVL---LIGVGVTVIG 103 (165)
Q Consensus 81 ~~~pFgMtR~DVI---~IGlgvfl~G 103 (165)
++-|||+.|.+.+ ..++.+++.+
T Consensus 48 ~~~pyG~~r~E~l~~l~~~~~l~~~~ 73 (268)
T TIGR01297 48 ERHPFGHGRAEILAALLNGLFLVVVA 73 (268)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4699999998744 4444444433
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=64.22 E-value=18 Score=27.90 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHHHHHHH--HHHHhCC-CcccchhHHHHHHhhhhhhhe
Q 031110 90 KDVLLIGVGVTVIGYGLKS--GLELFGV-DPLQAGNVVEVIVVLGLTLGW 136 (165)
Q Consensus 90 ~DVI~IGlgvfl~Gg~lY~--gLq~~Gl-D~~~AGiwsQ~lLVlGlvVgW 136 (165)
.+.|.+++++|++|.++-. .+-++|- |.-....| +++|+|+ +.+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~--~llilG~-L~f 87 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGW--ALLILGI-LCF 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc--hHHHHHH-HHH
Confidence 6788888888888876654 3445553 43333333 5777777 444
No 7
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=63.18 E-value=7.3 Score=27.30 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcc--cchhHHHHHHhhhhhhheee
Q 031110 94 LIGVGVTVIGYGLKSGLELFGVDPL--QAGNVVEVIVVLGLTLGWVS 138 (165)
Q Consensus 94 ~IGlgvfl~Gg~lY~gLq~~GlD~~--~AGiwsQ~lLVlGlvVgWv~ 138 (165)
.||+.++++|...|..+-..=.|.. ....|.|+++-+.+-++|+.
T Consensus 3 ~ig~v~ll~~l~vY~~~a~~l~~~~~~~~~~~~~l~~Yvv~G~~Wvl 49 (62)
T PF11003_consen 3 LIGLVLLLVGLPVYAVLAVTLADWLLARWPWWVQLIYYVVLGLLWVL 49 (62)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence 4788888888888886553322222 88999999988878889974
No 8
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=51.14 E-value=24 Score=29.18 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 031110 151 YAQQLRDYEDKV 162 (165)
Q Consensus 151 Y~qQ~kdYE~AV 162 (165)
+.+|.++|++.+
T Consensus 100 wk~~~~~~d~i~ 111 (205)
T PF07895_consen 100 WKKQMIRYDDIA 111 (205)
T ss_pred HHHHHHHHHHHh
Confidence 899999998754
No 9
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=49.85 E-value=16 Score=26.80 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 031110 90 KDVLLIGVGVTVIGYGLKSGLE 111 (165)
Q Consensus 90 ~DVI~IGlgvfl~Gg~lY~gLq 111 (165)
.|.|++++.|.+.|+++|++-.
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999998753
No 10
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=49.46 E-value=32 Score=28.91 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCCCccccchhhhh
Q 031110 81 TETPFGYTRKDVLL 94 (165)
Q Consensus 81 ~~~pFgMtR~DVI~ 94 (165)
++-|||+.|...+.
T Consensus 69 ~~~pyG~~r~E~l~ 82 (299)
T PRK09509 69 DEHTFGHGKAESLA 82 (299)
T ss_pred CCCCCccHHHHHHH
Confidence 45899999988653
No 11
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=47.65 E-value=26 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.0
Q ss_pred CccccchhhhhhhHHHHHHHHHHHH
Q 031110 84 PFGYTRKDVLLIGVGVTVIGYGLKS 108 (165)
Q Consensus 84 pFgMtR~DVI~IGlgvfl~Gg~lY~ 108 (165)
-|||.|.-|--..+|+|++.+++-.
T Consensus 75 ~~~~~rrsvrEg~VGlfvL~gi~ll 99 (370)
T PLN03094 75 DFGFGKRSVWEGGVGLFLLSGAALL 99 (370)
T ss_pred hcCCcchhHHHHHHHHHHHHHHHHH
Confidence 3999999998888888887766543
No 12
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=45.53 E-value=29 Score=27.69 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhhhhheeee
Q 031110 93 LLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST 139 (165)
Q Consensus 93 I~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S 139 (165)
-.++++.|++|..+|..+..+=. |---.|...+++.+.+ +.|++.
T Consensus 65 P~~a~acFflG~f~ySA~vraqy-PeiGSNFfp~il~l~L-~~Wi~~ 109 (117)
T PF07226_consen 65 PKLALACFFLGLFGYSAFVRAQY-PEIGSNFFPSILCLIL-VFWIGY 109 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-hhhhhhHHHHHHHHHH-HHHHHH
Confidence 36899999999999998776554 3334577778888856 899863
No 13
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=44.42 E-value=25 Score=29.87 Aligned_cols=32 Identities=28% Similarity=0.238 Sum_probs=26.8
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCCCccc
Q 031110 88 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 119 (165)
Q Consensus 88 tR~DVI~IGlgvfl~Gg~lY~gLq~~GlD~~~ 119 (165)
++++.+.+.+.++.+-.+.|.++.++|+|+..
T Consensus 160 ~~~~~~~~~~~l~~~a~~~y~~~~~~gvd~~w 191 (235)
T cd03381 160 SLKRYVLITFFLFGFALGFYLLLKWLGVDLLW 191 (235)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 56677788888888888889999999999974
No 14
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=41.97 E-value=19 Score=30.06 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=44.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhh------hhhheeeeeeeeeecCCccHHHHHHHHHHh
Q 031110 88 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLG------LTLGWVSTYIFRVSNKEMTYAQQLRDYEDK 161 (165)
Q Consensus 88 tR~DVI~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlG------lvVgWv~SYLfRV~tk~MTY~qQ~kdYE~A 161 (165)
+.+.++.+++..+++..+.+..-...+.+....+.|.++++++= ..+.|+ ++.+++.|+.-+++|+++|.
T Consensus 150 ~~~~v~~l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi----~~sL~~t~~~lk~~~q~~KL 225 (295)
T PF06814_consen 150 REKKVLMLVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWI----FRSLSKTIRDLKARRQTAKL 225 (295)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44568888999888887766544444444443344555544432 224565 45567778888888888775
No 15
>PRK11056 hypothetical protein; Provisional
Probab=37.61 E-value=51 Score=26.40 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhhhhheeee
Q 031110 93 LLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST 139 (165)
Q Consensus 93 I~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S 139 (165)
..++.+.|++|..+|..+..+=-.. --.|...+++.+.+ +.|++.
T Consensus 65 P~~a~acFflG~f~ySA~vraeyPe-iGSNF~p~il~~~L-~~Wi~~ 109 (120)
T PRK11056 65 PGLAAACFFLGVFLYSAFVRAEYPE-IGSNFFPAVLSVIL-VFWIGR 109 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcc-cccchHHHHHHHHH-HHHHHH
Confidence 3688999999999999887654432 33577778888856 899864
No 16
>PHA03049 IMV membrane protein; Provisional
Probab=37.29 E-value=33 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 031110 90 KDVLLIGVGVTVIGYGLKSGLE 111 (165)
Q Consensus 90 ~DVI~IGlgvfl~Gg~lY~gLq 111 (165)
.|++++.+.|-+.|.++|++..
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999998753
No 17
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=34.92 E-value=27 Score=23.01 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=10.4
Q ss_pred cCCccHHHHHHHHHH
Q 031110 146 NKEMTYAQQLRDYED 160 (165)
Q Consensus 146 tk~MTY~qQ~kdYE~ 160 (165)
-+.|.|.+|.|.|+-
T Consensus 6 ~g~MD~~~he~Ty~g 20 (44)
T PF07835_consen 6 AGEMDIAEHEKTYDG 20 (44)
T ss_dssp TT-S--HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 478999999999985
No 18
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.35 E-value=43 Score=21.09 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=18.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHH
Q 031110 87 YTRKDVLLIGVGVTVIGYGLKSGLE 111 (165)
Q Consensus 87 MtR~DVI~IGlgvfl~Gg~lY~gLq 111 (165)
|+-.-+.+|=+.+.++|++.|..+.
T Consensus 1 Ms~~vi~G~ilv~lLlgYLvyALi~ 25 (29)
T PRK14748 1 MSAGVITGVLLVFLLLGYLVYALIN 25 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445566777788888988887664
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.06 E-value=47 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhh
Q 031110 94 LIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGL 132 (165)
Q Consensus 94 ~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGl 132 (165)
.+|+.+.+.| ++-..+-..|+-+.-+....=+++.+|+
T Consensus 13 ilgilli~~g-I~~Lv~~~~~l~~~~s~~lg~~~lAlg~ 50 (191)
T PF04156_consen 13 ILGILLIASG-IAALVLFISGLGALISFILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344433333 3334444444555555555445555444
No 20
>PF07256 DUF1435: Protein of unknown function (DUF1435); InterPro: IPR009885 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=33.79 E-value=46 Score=24.83 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHH-HHHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHH
Q 031110 96 GVGVTVIGYGLKS-GLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDY 158 (165)
Q Consensus 96 Glgvfl~Gg~lY~-gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdY 158 (165)
|=|+++-+.+.-. .+--.|+|..+.-+++-.++.. -|=||+|+|.|
T Consensus 9 gWGvllp~~l~~~l~~~~ls~~~~r~~iv~amL~T~-----------------~MLfh~rlRH~ 55 (78)
T PF07256_consen 9 GWGVLLPGALIPLLALANLSFDQWRIVIVVAMLLTL-----------------AMLFHRRLRHF 55 (78)
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HHHHhHhhhHH
Confidence 4566666633332 4555667776665555555444 47899999998
No 21
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.35 E-value=19 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=14.9
Q ss_pred cchhHHHHHHhhhhhhheeeeeeee
Q 031110 119 QAGNVVEVIVVLGLTLGWVSTYIFR 143 (165)
Q Consensus 119 ~AGiwsQ~lLVlGlvVgWv~SYLfR 143 (165)
..+++.=+.+++|.++||+.+...+
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667778887766543
No 22
>PLN02220 delta-9 acyl-lipid desaturase
Probab=31.83 E-value=72 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=12.7
Q ss_pred CCCCCCCCCccc---cchhhhhhhHH
Q 031110 76 DSSDQTETPFGY---TRKDVLLIGVG 98 (165)
Q Consensus 76 ~~~~~~~~pFgM---tR~DVI~IGlg 98 (165)
.+..+++.+|.- ++.|++-+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (299)
T PLN02220 14 KAVRKEKRAFFFRKWTRLDVVRASAV 39 (299)
T ss_pred cccccccchhhhhccceehhHHHHHH
Confidence 344456666665 56666554433
No 23
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=28.63 E-value=65 Score=26.21 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCCCccccchhhhhhhHHHHHHHHHHHHHHHHhC-CCcccchhHHHHHHhh
Q 031110 80 QTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFG-VDPLQAGNVVEVIVVL 130 (165)
Q Consensus 80 ~~~~pFgMtR~DVI~IGlgvfl~Gg~lY~gLq~~G-lD~~~AGiwsQ~lLVl 130 (165)
+.|.|..|.=..+-++|-.+-++|=++.-.+...| ++..+|+.|.-+.||+
T Consensus 11 ~Pk~~~~~n~l~AFlvGG~IC~iGQ~l~d~~~~~~~lt~~~a~~~~~~~lV~ 62 (141)
T TIGR02838 11 EPKPPYLKNCVMAFLVGGLICLIGQLISDFYLRYFQFSEKTAGSPTSATLIF 62 (141)
T ss_pred CCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHhccCChhhcccchhhHHHH
Confidence 35688889999999999999999988888888888 9999999999888876
No 24
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=28.36 E-value=48 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred CccccchhhhhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHHHH
Q 031110 84 PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYED 160 (165)
Q Consensus 84 pFgMtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~ 160 (165)
.+|-|-..+..+.+++++++..+++.+. +...| -+..++ ..+.-++++-= +--.+.+.+.|.+|+|+
T Consensus 150 qYGlT~~R~~~~~~~~~~~~~~l~~~~r-------~~~~~-~i~~~~-~~~~l~~~~~P-~~~~~is~~sQ~~Rl~~ 216 (217)
T PF13687_consen 150 QYGLTPNRYYALLLAIFLLIYALYYIFR-------KRQRW-YIPLSL-AILLLLSSFGP-LDPFRISVNSQLARLEK 216 (217)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHH-------ccccc-HHHHHH-HHHHHHHHhCC-CCHHHHhHHHHHHHHhc
Confidence 4666767777788888888878877772 12233 111111 11222222322 66678899999999986
No 25
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=27.35 E-value=88 Score=25.13 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=18.6
Q ss_pred CCCCccccchhhhhh-hHHHHHHHHHHHHHHH
Q 031110 81 TETPFGYTRKDVLLI-GVGVTVIGYGLKSGLE 111 (165)
Q Consensus 81 ~~~pFgMtR~DVI~I-Glgvfl~Gg~lY~gLq 111 (165)
++-|||+.|...+.. ..+++++...++...+
T Consensus 57 ~~~pfG~~r~e~l~~~~~~~~l~~~~~~~~~~ 88 (284)
T PF01545_consen 57 KRYPFGYGRLEPLAALIVSILLIFLGLFLIVE 88 (284)
T ss_dssp SSSSSSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHhhhhhhhhHhhhHHHHHHH
Confidence 568999999877653 3344444444444443
No 26
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.02 E-value=1.1e+02 Score=21.09 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=27.7
Q ss_pred CCCCCCCCCccccchhhhhhhHHHHHHHHHHHHHHH
Q 031110 76 DSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLE 111 (165)
Q Consensus 76 ~~~~~~~~pFgMtR~DVI~IGlgvfl~Gg~lY~gLq 111 (165)
|++.....|-.-+|.-.+++|+.+-++.++++..++
T Consensus 45 d~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 45 DPAIVPDKPVSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred cccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556566678888999999988887777777777665
No 27
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.97 E-value=16 Score=28.04 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=22.7
Q ss_pred HHHhhhhhhheeeeeeeeeecCC-ccHH-------HHHHHHHHhh
Q 031110 126 VIVVLGLTLGWVSTYIFRVSNKE-MTYA-------QQLRDYEDKV 162 (165)
Q Consensus 126 ~lLVlGlvVgWv~SYLfRV~tk~-MTY~-------qQ~kdYE~AV 162 (165)
+.||+|++|||+...++.=-.++ =..- +|+.+|++.|
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999888777554332 2333 3445666554
No 28
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=25.51 E-value=40 Score=34.26 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcc--cchhHHHHHHhhhhhhheeeeeeeee
Q 031110 95 IGVGVTVIGYGLKSGLELFGVDPL--QAGNVVEVIVVLGLTLGWVSTYIFRV 144 (165)
Q Consensus 95 IGlgvfl~Gg~lY~gLq~~GlD~~--~AGiwsQ~lLVlGlvVgWv~SYLfRV 144 (165)
+.++++++..+.|.+-..+++++. -|+.|+-+++++.+++.|+...++|.
T Consensus 2 ~~l~~~~l~~~iW~~gp~~~~~~~~Pl~~~~~r~~~i~~~~~~~~~~~~~~~ 53 (1169)
T TIGR03348 2 SLLGLILLCILIWWAGPLLAVGDYKPLESVWARLLIIAVLLLVWLLWLLIRQ 53 (1169)
T ss_pred hHHHHHHHHHHHHHhhhhhhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677776677666654 56778876766666677777655443
No 29
>MTH00046 CYTB cytochrome b; Validated
Probab=24.85 E-value=92 Score=28.32 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=29.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcc--ccchhhhhhhHHHHHHHHH
Q 031110 63 IPRSSGSSNSNGSDSSDQTETPFG--YTRKDVLLIGVGVTVIGYG 105 (165)
Q Consensus 63 ~~rs~~~~~~~~~~~~~~~~~pFg--MtR~DVI~IGlgvfl~Gg~ 105 (165)
..|..+|+|..+.++++.+|.||- ++-+|.+.+.+.++++...
T Consensus 190 ~lh~~GssNPlg~~~~~~dki~F~Py~~~KDl~~~~~~l~~~~~~ 234 (355)
T MTH00046 190 YLHKSGSSNPLFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFW 234 (355)
T ss_pred heeecccCCcccccCCcccccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 457788888887766545678885 4889977776665555433
No 30
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.67 E-value=76 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.126 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 031110 95 IGVGVTVIGYGLKSGLEL 112 (165)
Q Consensus 95 IGlgvfl~Gg~lY~gLq~ 112 (165)
|+..|++++++.|++++-
T Consensus 125 i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556667777789988764
No 31
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=23.65 E-value=70 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=21.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCC
Q 031110 90 KDVLLIGVGVTVIGYGLKSGLELFGV 115 (165)
Q Consensus 90 ~DVI~IGlgvfl~Gg~lY~gLq~~Gl 115 (165)
.-++.|.++++++|.-+|.+-.++|-
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCC
Confidence 45678999999999999999888883
No 32
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=22.82 E-value=93 Score=27.68 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCccccchhhhhhh-HHHHHHHHHHHH---HHHHhC-CCcccchhHHHHHHhhhhhhheeeeeeeeee
Q 031110 83 TPFGYTRKDVLLIG-VGVTVIGYGLKS---GLELFG-VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVS 145 (165)
Q Consensus 83 ~pFgMtR~DVI~IG-lgvfl~Gg~lY~---gLq~~G-lD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~ 145 (165)
.+|||.|..++.-= -++++++..+|. ..+.+- =.+.+. ...=.+-++|+++=+++.++++--
T Consensus 82 ~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~ 148 (296)
T COG1230 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG 148 (296)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHHHhhCC
Confidence 79999999988642 233333333333 344332 333333 333444556777888888887764
No 33
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=22.43 E-value=53 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=10.8
Q ss_pred ccHHHHHHHHHHhh
Q 031110 149 MTYAQQLRDYEDKV 162 (165)
Q Consensus 149 MTY~qQ~kdYE~AV 162 (165)
.+|.+||++|=..+
T Consensus 15 q~YD~qRE~YV~~L 28 (35)
T PF12180_consen 15 QKYDQQREAYVRGL 28 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 47999999996654
No 34
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=21.81 E-value=92 Score=26.98 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=37.4
Q ss_pred CCCCccccchhhh---hhhHHHHHHHHHHH-HHHHHhC--CCcccchhHHHHHHhhhhhhheeeeeeeeeec
Q 031110 81 TETPFGYTRKDVL---LIGVGVTVIGYGLK-SGLELFG--VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN 146 (165)
Q Consensus 81 ~~~pFgMtR~DVI---~IGlgvfl~Gg~lY-~gLq~~G--lD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~t 146 (165)
.+-|||.-|..-+ .+++.+++.|+..- ..+..+- -+.-...+..-+.++..++-.|+..|..|+.-
T Consensus 71 ~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~k 142 (304)
T COG0053 71 RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGK 142 (304)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999998754 45666666554433 3444332 23333333334444444456788878777653
No 35
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.19 E-value=57 Score=22.33 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=23.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 031110 87 YTRKDVLLIGVGVTVIGYGLKSGLELFGV 115 (165)
Q Consensus 87 MtR~DVI~IGlgvfl~Gg~lY~gLq~~Gl 115 (165)
|.-.-++.|.+..+++|.-+|.+..++|=
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCC
Confidence 44456788999999999999999888884
No 36
>PHA01080 hypothetical protein
Probab=20.96 E-value=46 Score=25.15 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred HHHHhCCCcccchhHHHHHHhhhhhhheeeee
Q 031110 109 GLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY 140 (165)
Q Consensus 109 gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY 140 (165)
.++..+++|.++|.+-.+.+-.-+++|++++|
T Consensus 38 ~~~~~~itpt~~~qaFglgF~~V~~lgyls~Y 69 (80)
T PHA01080 38 LMSYTRITPTDAGTAFSFGFMAVFALGYLSTY 69 (80)
T ss_pred HHHHhccCHHHHHHHHhhhHHHHHHhhhhHHH
Confidence 56777788877777766666555556666655
No 37
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=20.38 E-value=89 Score=27.06 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=12.3
Q ss_pred HHHhhhhhhheeeeee
Q 031110 126 VIVVLGLTLGWVSTYI 141 (165)
Q Consensus 126 ~lLVlGlvVgWv~SYL 141 (165)
.++.+|+++||++|++
T Consensus 282 ~l~~~g~~lg~lgs~~ 297 (309)
T TIGR00439 282 LLLGFCIALGVVGAWL 297 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556678899999875
No 38
>PRK11901 hypothetical protein; Reviewed
Probab=20.06 E-value=1.1e+02 Score=28.02 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=8.8
Q ss_pred cccccccccccccc
Q 031110 47 PRKGSKKLISDRAR 60 (165)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (165)
|+..++--.++||.
T Consensus 6 pe~elkPDtSDRrp 19 (327)
T PRK11901 6 PEDELKPDTSDRRP 19 (327)
T ss_pred cccccCCCcccCCC
Confidence 55566666667665
Done!