Query 031110
Match_columns 165
No_of_seqs 75 out of 77
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 47.8 8.8 0.0003 31.2 2.1 23 81-103 71-96 (306)
2 3h90_A Ferrous-iron efflux pum 47.3 20 0.0007 28.3 4.1 23 81-103 62-87 (283)
3 3ezz_A Dual specificity protei 39.5 13 0.00043 25.9 1.6 20 144-163 124-143 (144)
4 3kkj_A Amine oxidase, flavin-c 38.1 9.6 0.00033 25.3 0.7 27 87-116 1-27 (336)
5 1qle_D Cytochrome AA3, ccytoch 36.4 13 0.00044 23.7 1.1 15 146-160 5-19 (43)
6 3oz2_A Digeranylgeranylglycero 36.4 9.8 0.00033 29.0 0.7 29 86-116 1-29 (397)
7 2e0t_A Dual specificity phosph 33.4 17 0.00058 25.3 1.5 21 143-163 126-146 (151)
8 3cgv_A Geranylgeranyl reductas 30.9 14 0.00046 28.7 0.7 29 86-116 1-29 (397)
9 4gde_A UDP-galactopyranose mut 30.3 14 0.00048 29.9 0.7 26 90-116 11-36 (513)
10 2jp3_A FXYD domain-containing 28.0 48 0.0017 23.2 3.0 29 78-106 3-35 (67)
11 1m56_D Cytochrome C oxidase; m 24.7 28 0.00095 22.8 1.2 15 146-160 13-27 (51)
12 2nt2_A Protein phosphatase sli 23.4 35 0.0012 23.6 1.7 19 145-163 125-143 (145)
13 3i3l_A Alkylhalidase CMLS; fla 22.4 20 0.0007 31.6 0.3 27 87-115 21-47 (591)
14 3rp8_A Flavoprotein monooxygen 22.1 20 0.00068 28.5 0.1 31 84-116 18-48 (407)
15 3lov_A Protoporphyrinogen oxid 20.0 26 0.0009 28.3 0.4 27 86-114 1-27 (475)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=47.83 E-value=8.8 Score=31.17 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=14.9
Q ss_pred CCCCccccchhhhh---hhHHHHHHH
Q 031110 81 TETPFGYTRKDVLL---IGVGVTVIG 103 (165)
Q Consensus 81 ~~~pFgMtR~DVI~---IGlgvfl~G 103 (165)
++-|||+.|...+. .|+.++++|
T Consensus 71 ~~~pyG~~R~E~l~al~~~~~l~~~~ 96 (306)
T 3j1z_P 71 HDHRYGHGKAEPLAALAQSAFIMGSA 96 (306)
T ss_dssp CTTSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHH
Confidence 45899999987654 344444443
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=47.28 E-value=20 Score=28.27 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=15.7
Q ss_pred CCCCccccchhhhh---hhHHHHHHH
Q 031110 81 TETPFGYTRKDVLL---IGVGVTVIG 103 (165)
Q Consensus 81 ~~~pFgMtR~DVI~---IGlgvfl~G 103 (165)
++-|||+.|...+. .|+.++++|
T Consensus 62 ~~~pyG~~r~E~l~~l~~~~~l~~~~ 87 (283)
T 3h90_A 62 DNHSFGHGKAESLAALAQSMFISGSA 87 (283)
T ss_dssp SSCSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 56899999988654 455444444
No 3
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=39.51 E-value=13 Score=25.85 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.2
Q ss_pred eecCCccHHHHHHHHHHhhh
Q 031110 144 VSNKEMTYAQQLRDYEDKVM 163 (165)
Q Consensus 144 V~tk~MTY~qQ~kdYE~AVm 163 (165)
.+.-+.-|++|+++||+.++
T Consensus 124 ~~~pn~~f~~qL~~~e~~l~ 143 (144)
T 3ezz_A 124 IISPNFSFMGQLLQFESQVL 143 (144)
T ss_dssp TCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHh
Confidence 36778999999999999875
No 4
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=38.08 E-value=9.6 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 87 YTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 87 MtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
|| .||+.||-|...+- +-..|...|++
T Consensus 1 Mt-~dV~IIGaGpaGL~--aA~~La~~G~~ 27 (336)
T 3kkj_A 1 MT-VPIAIIGTGIAGLS--AAQALTAAGHQ 27 (336)
T ss_dssp -C-CCEEEECCSHHHHH--HHHHHHHTTCC
T ss_pred CC-CCEEEECcCHHHHH--HHHHHHHCCCC
Confidence 44 68999999976554 44456777875
No 5
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=36.39 E-value=13 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.3
Q ss_pred cCCccHHHHHHHHHH
Q 031110 146 NKEMTYAQQLRDYED 160 (165)
Q Consensus 146 tk~MTY~qQ~kdYE~ 160 (165)
.++|.|.+|.+.|+-
T Consensus 5 hG~MD~~~hE~Ty~g 19 (43)
T 1qle_D 5 HGEMDIRHQQATFAG 19 (43)
T ss_dssp TTCSCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 479999999999984
No 6
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=36.36 E-value=9.8 Score=28.96 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=21.2
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 86 gMtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
||..-||+.||-|.- |..+-..|...|++
T Consensus 1 ~Me~yDViIVGaGpa--Gl~~A~~La~~G~~ 29 (397)
T 3oz2_A 1 GMETYDVLVVGGGPG--GSTAARYAAKYGLK 29 (397)
T ss_dssp CEEEEEEEEECCSHH--HHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECcCHH--HHHHHHHHHHCCCc
Confidence 799999999999875 43444456666764
No 7
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=33.39 E-value=17 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=17.0
Q ss_pred eeecCCccHHHHHHHHHHhhh
Q 031110 143 RVSNKEMTYAQQLRDYEDKVM 163 (165)
Q Consensus 143 RV~tk~MTY~qQ~kdYE~AVm 163 (165)
|-+.-++.|++|+++||+...
T Consensus 126 R~i~pn~~f~~qL~~~e~~l~ 146 (151)
T 2e0t_A 126 RGIIPNRGFLRQLLALDRRLR 146 (151)
T ss_dssp SCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 434678999999999998764
No 8
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=30.89 E-value=14 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=19.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 86 gMtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
||.+.||+.||-|+..+- +-..|...|++
T Consensus 1 gm~~~dVvIvG~G~aGl~--~A~~La~~G~~ 29 (397)
T 3cgv_A 1 GMETYDVLVVGGGPGGST--AARYAAKYGLK 29 (397)
T ss_dssp CEEEEEEEEECCSHHHHH--HHHHHHHTTCC
T ss_pred CCccCCEEEECcCHHHHH--HHHHHHHCCCC
Confidence 688999999999985544 33344445653
No 9
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=30.28 E-value=14 Score=29.87 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=20.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 90 KDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 90 ~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
.||+.||-|+..+- ++|.+.++-|.+
T Consensus 11 ~DVvIIGaGisGLs-aA~~L~k~~G~~ 36 (513)
T 4gde_A 11 VDVLVIGAGPTGLG-AAKRLNQIDGPS 36 (513)
T ss_dssp EEEEEECCSHHHHH-HHHHHHHHCCSC
T ss_pred CCEEEECCcHHHHH-HHHHHHhhCCCC
Confidence 68999999998887 556666666876
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=28.02 E-value=48 Score=23.20 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCCCCCCcccc----chhhhhhhHHHHHHHHHH
Q 031110 78 SDQTETPFGYT----RKDVLLIGVGVTVIGYGL 106 (165)
Q Consensus 78 ~~~~~~pFgMt----R~DVI~IGlgvfl~Gg~l 106 (165)
..+++-||-|. |+.=+.++..+|++|.++
T Consensus 3 ~~~e~dpF~YDY~tLRigGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 3 PVDKGSPFYYDWESLQLGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp TTSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcccchHHheecchhhHHHHHHHHHHH
Confidence 34566899983 555566666677777544
No 11
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=24.74 E-value=28 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=13.4
Q ss_pred cCCccHHHHHHHHHH
Q 031110 146 NKEMTYAQQLRDYED 160 (165)
Q Consensus 146 tk~MTY~qQ~kdYE~ 160 (165)
.++|.|.+|.|.|+-
T Consensus 13 ~g~MD~~~he~Ty~g 27 (51)
T 1m56_D 13 AGSMDITQQEKTFAG 27 (51)
T ss_dssp TTCSCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 489999999999985
No 12
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=23.35 E-value=35 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=15.9
Q ss_pred ecCCccHHHHHHHHHHhhh
Q 031110 145 SNKEMTYAQQLRDYEDKVM 163 (165)
Q Consensus 145 ~tk~MTY~qQ~kdYE~AVm 163 (165)
+.-+..|.+|+++||+...
T Consensus 125 ~~pn~~f~~qL~~~e~~l~ 143 (145)
T 2nt2_A 125 TKPNPSFMRQLEEYQGILL 143 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhh
Confidence 4568889999999999764
No 13
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=22.44 E-value=20 Score=31.62 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=18.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 031110 87 YTRKDVLLIGVGVTVIGYGLKSGLELFGV 115 (165)
Q Consensus 87 MtR~DVI~IGlgvfl~Gg~lY~gLq~~Gl 115 (165)
|+..||+.||-|+..+- +-..|...|+
T Consensus 21 M~~~DVvIVGgG~AGl~--aA~~Lar~G~ 47 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSV--AGLTLHKLGH 47 (591)
T ss_dssp CCCCEEEEECCSHHHHH--HHHHHHHTTC
T ss_pred CCCCCEEEECcCHHHHH--HHHHHHcCCC
Confidence 77899999999975444 3334445564
No 14
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=22.07 E-value=20 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=17.7
Q ss_pred CccccchhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 84 PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 84 pFgMtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
|-.+++.||+.||-|+..+ .+-..|...|++
T Consensus 18 ~~~~~~~dV~IVGaG~aGl--~~A~~La~~G~~ 48 (407)
T 3rp8_A 18 LYFQGHMKAIVIGAGIGGL--SAAVALKQSGID 48 (407)
T ss_dssp -----CCEEEEECCSHHHH--HHHHHHHHTTCE
T ss_pred ccCCCCCEEEEECCCHHHH--HHHHHHHhCCCC
Confidence 3344567999999997644 344455556764
No 15
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=20.02 E-value=26 Score=28.34 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=19.0
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhC
Q 031110 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFG 114 (165)
Q Consensus 86 gMtR~DVI~IGlgvfl~Gg~lY~gLq~~G 114 (165)
||.+.||+.||-|+..+- .+ +-|...|
T Consensus 1 ~m~~~~v~IiGaG~~Gl~-~A-~~L~~~g 27 (475)
T 3lov_A 1 GMSSKRLVIVGGGITGLA-AA-YYAERAF 27 (475)
T ss_dssp CCCSCEEEEECCBHHHHH-HH-HHHHHHC
T ss_pred CCCcccEEEECCCHHHHH-HH-HHHHHhC
Confidence 688889999999987665 23 3344445
Done!