Query 031110
Match_columns 165
No_of_seqs 75 out of 77
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 14:47:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ryia1 c.3.1.2 (A:1-218,A:307 24.0 9.8 0.00071 26.3 0.6 23 87-110 1-24 (276)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 21.0 42 0.003 18.5 2.8 20 93-112 1-20 (27)
3 d2bcgg1 c.3.1.3 (G:5-301) Guan 19.9 16 0.0012 22.7 0.9 27 88-116 4-30 (297)
4 d2g2ub1 d.98.1.1 (B:1-165) bet 19.6 13 0.00097 28.0 0.6 16 81-96 10-25 (165)
5 d1mkpa_ c.45.1.1 (A:) Mapk pho 18.8 22 0.0016 23.3 1.5 17 145-161 127-143 (144)
6 d2gf3a1 c.3.1.2 (A:1-217,A:322 18.3 15 0.0011 25.5 0.5 26 88-115 2-27 (281)
7 d2v5za1 c.3.1.2 (A:6-289,A:402 17.0 18 0.0013 24.4 0.7 24 91-116 1-24 (383)
8 d1au1a_ a.26.1.3 (A:) Interfer 16.1 18 0.0013 26.5 0.5 30 23-52 17-46 (166)
9 d1rh5b_ f.23.28.1 (B:) Preprot 15.9 48 0.0035 20.8 2.5 20 91-110 26-45 (56)
10 d1b5qa1 c.3.1.2 (A:5-293,A:406 15.0 22 0.0016 21.8 0.7 23 91-115 2-24 (347)
No 1
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=24.00 E-value=9.8 Score=26.28 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=16.6
Q ss_pred cc-chhhhhhhHHHHHHHHHHHHHH
Q 031110 87 YT-RKDVLLIGVGVTVIGYGLKSGL 110 (165)
Q Consensus 87 Mt-R~DVI~IGlgvfl~Gg~lY~gL 110 (165)
|. .-||+.||-|+..+- .+|.+.
T Consensus 1 m~~~~DvvIIGaGi~Gls-~A~~La 24 (276)
T d1ryia1 1 MKRHYEAVVIGGGIIGSA-IAYYLA 24 (276)
T ss_dssp CCSEEEEEEECCSHHHHH-HHHHHH
T ss_pred CCccCCEEEECcCHHHHH-HHHHHH
Confidence 44 369999999998887 444433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.02 E-value=42 Score=18.49 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 031110 93 LLIGVGVTVIGYGLKSGLEL 112 (165)
Q Consensus 93 I~IGlgvfl~Gg~lY~gLq~ 112 (165)
|.+|+.+.-+||+.|...|.
T Consensus 1 ivlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeehHHHHHHHHHHHHHH
Confidence 45778877788788877765
No 3
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.94 E-value=16 Score=22.66 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=18.0
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 88 TRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 88 tR~DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
+.-|||.||-|+-.+= .-+.|...|++
T Consensus 4 ~~yDviViGaG~~Gl~--~A~~La~~G~~ 30 (297)
T d2bcgg1 4 TDYDVIVLGTGITECI--LSGLLSVDGKK 30 (297)
T ss_dssp CBCSEEEECCSHHHHH--HHHHHHHTTCC
T ss_pred CcCCEEEECcCHHHHH--HHHHHHHCCCC
Confidence 4669999999876554 33345566765
No 4
>d2g2ub1 d.98.1.1 (B:1-165) beta-lactamase-inhibitor protein, BLIP {Streptomyces clavuligerus [TaxId: 1901]}
Probab=19.64 E-value=13 Score=27.98 Aligned_cols=16 Identities=50% Similarity=0.715 Sum_probs=13.1
Q ss_pred CCCCccccchhhhhhh
Q 031110 81 TETPFGYTRKDVLLIG 96 (165)
Q Consensus 81 ~~~pFgMtR~DVI~IG 96 (165)
++.-|||||..|+-|+
T Consensus 10 ~qiQFGMt~~qV~~i~ 25 (165)
T d2g2ub1 10 TQIQFGMTRQQVLDIA 25 (165)
T ss_dssp HHSCTTCBHHHHHHHH
T ss_pred cceeecccHHHHHHhh
Confidence 3478999999998875
No 5
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}
Probab=18.76 E-value=22 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.9
Q ss_pred ecCCccHHHHHHHHHHh
Q 031110 145 SNKEMTYAQQLRDYEDK 161 (165)
Q Consensus 145 ~tk~MTY~qQ~kdYE~A 161 (165)
+.-+-.|.+|+++||+.
T Consensus 127 i~pn~~f~~qL~~~e~~ 143 (144)
T d1mkpa_ 127 ISPNFNFMGQLLDFERT 143 (144)
T ss_dssp CCCCSTTHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 34577899999999985
No 6
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=18.29 E-value=15 Score=25.54 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=18.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 031110 88 TRKDVLLIGVGVTVIGYGLKSGLELFGV 115 (165)
Q Consensus 88 tR~DVI~IGlgvfl~Gg~lY~gLq~~Gl 115 (165)
|.-||+.||-|+..+- .+|.+.+ .|+
T Consensus 2 ~~yDvvIIGaGi~Gls-~A~~La~-~G~ 27 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMA-AGYQLAK-QGV 27 (281)
T ss_dssp CCEEEEEECCSHHHHH-HHHHHHH-TTC
T ss_pred CcCCEEEECcCHHHHH-HHHHHHH-CCC
Confidence 5679999999999888 4454433 354
No 7
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.99 E-value=18 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCC
Q 031110 91 DVLLIGVGVTVIGYGLKSGLELFGVD 116 (165)
Q Consensus 91 DVI~IGlgvfl~Gg~lY~gLq~~GlD 116 (165)
||+.||-|+-.+.. -+-|+..|++
T Consensus 1 DViVIGaG~aGL~a--A~~L~~~G~~ 24 (383)
T d2v5za1 1 DVVVVGGGISGMAA--AKLLHDSGLN 24 (383)
T ss_dssp SEEEECCBHHHHHH--HHHHHHTTCC
T ss_pred CEEEECCCHHHHHH--HHHHHhCCCC
Confidence 89999999876653 3446677876
No 8
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.11 E-value=18 Score=26.49 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=24.9
Q ss_pred cchhhhhhhhhhhhhhhccccccccccccc
Q 031110 23 ALPLLLHMRGVISKSLYKKEASLFPRKGSK 52 (165)
Q Consensus 23 ~lp~~~~~~g~~~~~~~~~~~~~~~~~~~~ 52 (165)
.|-+|.+|+|..|.||.....+.||.....
T Consensus 17 ~l~LL~~M~~~~~~CLkdr~dF~fP~e~~~ 46 (166)
T d1au1a_ 17 CQKLLWQLNGRLEYCLKDRMNFDIPEEIKQ 46 (166)
T ss_dssp HHHHHTTSCCCCSGGGGGCCCCCCCHHHHH
T ss_pred HHHHHHHccCCChhhhhcCcCCCCCHHHhc
Confidence 366778899977899999999999987664
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.88 E-value=48 Score=20.75 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 031110 91 DVLLIGVGVTVIGYGLKSGL 110 (165)
Q Consensus 91 DVI~IGlgvfl~Gg~lY~gL 110 (165)
-+...|+|+++.|.++|.+.
T Consensus 26 ia~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 26 VAKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677889999998888754
No 10
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=15.05 E-value=22 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=16.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCC
Q 031110 91 DVLLIGVGVTVIGYGLKSGLELFGV 115 (165)
Q Consensus 91 DVI~IGlgvfl~Gg~lY~gLq~~Gl 115 (165)
||+.||-|+..+-.+ +-|...|+
T Consensus 2 ~V~IIGaG~aGL~aA--~~L~~~G~ 24 (347)
T d1b5qa1 2 RVIVVGAGMSGISAA--KRLSEAGI 24 (347)
T ss_dssp CEEEECCBHHHHHHH--HHHHHTTC
T ss_pred CEEEECCcHHHHHHH--HHHHhCCC
Confidence 789999998766533 34666787
Done!