BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031114
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 1 MAKSLKLEENCFLNQF-GNRS-QYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE 58
+ ++L LE+ N F G++ + + + Y C +PDL+ GL+ H+D G ++ QD++
Sbjct: 132 LCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDK 191
Query: 59 --GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFY 116
GLQ+LKD QW VP +++V +GDQ+E++TNG +KS HRV+ + R S+ FY
Sbjct: 192 VSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFY 251
Query: 117 APELNKEIGPENGLINEEC 135
P + I P L+ +E
Sbjct: 252 NPGSDAVIYPAPALVEKEA 270
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 1 MAKSLKLEENCFLNQFGNRSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE- 57
++ L LE + + G + Q + NYY C +P+L LG++ H+D + T +L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 58 EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYA 117
GLQ+ + +W T + +++++ +GD +EI++NG +KS +HR + + EK R S VF
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 118 PELNKEI-GPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAK 164
P +K + P +++ E P F +I + + K Q L + K
Sbjct: 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEK 354
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 1 MAKSLKLEENCFLNQFGNRSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE- 57
++ L LE + + G + Q + NYY C +P+L LG++ H+D + T +L +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 58 EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYA 117
GLQ+ + +W T + +++++ +GD +EI++NG +KS +HR + + EK R S VF
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 305
Query: 118 PELNKEI-GPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAK 164
P +K + P +++ E P F +I + + K Q L + K
Sbjct: 306 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEK 353
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 1 MAKSLKLEENCFLNQFGNRSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE- 57
++ L LE + + G + Q + NYY C +P+L LG++ H+D + T +L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 58 EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYA 117
GLQ+ + +W T + ++++ +GD +EI++NG +KS +HR + + EK R S VF
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 118 PELNKEI-GPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAK 164
P +K + P ++ E P F +I + + K Q L + K
Sbjct: 307 PPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEK 354
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 1 MAKSLKLEENCF--LNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE 58
+A LKLE + F Q GN R +Y + + H D T++L EE
Sbjct: 149 IATYLKLERDFFKPTVQDGNSV---LRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE 205
Query: 59 G-LQVL-KDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKER 109
G L+VL +D QW + +++ +GD +E +TN + S VHRVV + R
Sbjct: 206 GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERR 258
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 56 DEEGLQV-LKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVV----TSAEKERF 110
+E GLQV KD W VP +++ +GD ++ ++G F S HRV+ T K R
Sbjct: 187 NEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRI 246
Query: 111 SVVVFYAP 118
S+ +F P
Sbjct: 247 SLPLFLHP 254
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 25 RFNYYA----HCQRPDLVLGLKPHSDGTGYTIVLQD--EEGLQVLKDE---QWFTVPKIS 75
RF Y+ H + L + PH D + T++ Q G L+ E + +P
Sbjct: 160 RFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRP 219
Query: 76 EAVLVLMGDQMEIMTNGIFKSPVHRVVTS-----AEKERFSVVVFYAPELN 121
+AVLV G ++T G K+P H V A R S V F P +
Sbjct: 220 DAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 25 RFNYYA----HCQRPDLVLGLKPHSDGTGYTIVLQD--EEGLQVLKDE---QWFTVPKIS 75
RF Y+ H + L + PH D + T++ Q G L+ E + +P
Sbjct: 180 RFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRP 239
Query: 76 EAVLVLMGDQMEIMTNGIFKSPVHRVVTS-----AEKERFSVVVFYAPELN 121
+AVLV G ++T G K+P H V A R S V F P +
Sbjct: 240 DAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 25 RFNYYA----HCQRPDLVLGLKPHSDGTGYTIVLQD--EEGLQVLKDE---QWFTVPKIS 75
RF Y+ H + L + PH D + T++ Q G L+ E + +P
Sbjct: 160 RFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRP 219
Query: 76 EAVLVLMGDQMEIMTNGIFKSPVHRVVTS-----AEKERFSVVVFYAPELN 121
+AVLV G ++T G K+P H V A R S V F P +
Sbjct: 220 DAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 25 RFNYYA----HCQRPDLVLGLKPHSDGTGYTIVLQD--EEGLQVLKDE---QWFTVPKIS 75
RF Y+ H + L + PH D + T++ Q G L+ E + +P
Sbjct: 160 RFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRP 219
Query: 76 EAVLVLMGDQMEIMTNGIFKSPVHRVVTS-----AEKERFSVVVFYAPELN 121
+AVLV G ++T G K+P H V A R S V F P +
Sbjct: 220 DAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 25 RFNYYA----HCQRPDLVLGLKPHSDGTGYTIVLQD--EEGLQVLKDE---QWFTVPKIS 75
RF Y+ H + L + PH D + T++ Q G L+ E + +P
Sbjct: 160 RFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRP 219
Query: 76 EAVLVLMGDQMEIMTNGIFKSPVHRVVTS-----AEKERFSVVVFYAPELN 121
+AVLV G ++T G K+P H V A + S V F P +
Sbjct: 220 DAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 39 LGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSP 97
L + H D + T++ Q + LQV + + L+ G M +TN +K+P
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 98 VHRVV-TSAEKERFSVVV 114
+HRV +AE++ V
Sbjct: 269 IHRVKWVNAERQSLPFFV 286
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 39 LGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSP 97
L + H D + T++ Q + LQV + + L+ G M +TN +K+P
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 98 VHRVV-TSAEKERFSVVV 114
+HRV +AE++ V
Sbjct: 269 IHRVKWVNAERQSLPFFV 286
>pdb|3R7D|A Chain A, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|B Chain B, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|C Chain C, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7F|A Chain A, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|B Chain B, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|C Chain C, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7L|A Chain A, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|B Chain B, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|C Chain C, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|D Chain D, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|E Chain E, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|F Chain F, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
Length = 304
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 101 VVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRAL 160
V AE+ + ++ + +N+ + ++ L+ E R+FK MK+ I QRAL
Sbjct: 233 TVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVI---QRAL 289
Query: 161 HT 162
T
Sbjct: 290 QT 291
>pdb|1NY7|2 Chain 2, Cowpea Mosaic Virus (Cpmv)
pdb|2BFU|L Chain L, X-Ray Structure Of Cpmv Top Component
Length = 369
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 92 GIFKSPVHRVVTSAEKERFSVVVF----YAPELNKEIGPENGLINEECPRLFKNMKD 144
G ++S HR+V AE E +VF + + ++ P L + CP L+ + D
Sbjct: 276 GFYESFPHRIVQFAEVEEKCTLVFSQQEFVTAWSTQVNPRTTLEADGCPYLYAIIHD 332
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 22 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISE 76
Y A F YY RP Y V ++ +Q LKD Q +T+P++ E
Sbjct: 326 YNAVFGYYLEVTRP-------------YYERVPKEYRPVQTLKDRQRYTLPEMKE 367
>pdb|2EJB|A Chain A, Crystal Structure Of Phenylacrylic Acid Decarboxylase From
Aquifex Aeolicus
Length = 189
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 52 IVLQDEEGL---QVLK--------DEQWFTVPKISEAVLV---------LMGDQMEIMTN 91
+VL++E L +VLK +E FT P S + LV + + + N
Sbjct: 41 VVLKEEHSLTFEEVLKGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIAN 100
Query: 92 GIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGL 130
GI K+ +HRV A KER +V+ EI EN L
Sbjct: 101 GINKNLIHRVGEVALKERVPLVLLVREAPYNEIHLENML 139
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 22 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISE 76
Y A F YY RP Y V ++ +Q LKD Q +T+P++ E
Sbjct: 442 YNAVFGYYLEVTRP-------------YYERVPKEYRPVQTLKDRQRYTLPEMKE 483
>pdb|3CFZ|A Chain A, Crystal Structure Of M. Jannaschii Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 292
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 16 FGNRSQYQARFN---YYAHCQRPDLVLGLK-PHSDGTGY--TIVLQDEEGLQ-------- 61
+ ++S+Y+ N +Y QRPD+ +G P+ D GY +VLQ E
Sbjct: 91 YTDKSKYKDEINSTNWYKILQRPDVKIGFSNPNDDPCGYRTQMVLQLAELYYKDPTIYDN 150
Query: 62 -VLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIF 94
VLK V + + L+L+ ++++ TN +F
Sbjct: 151 LVLKHSN-IKVEENNGTYLILVPKELDVDTNKLF 183
>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
pdb|3R9Z|A Chain A, Crystal Structure Of Stwhy2 K67a (Form Ii)
pdb|3RA0|A Chain A, Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
Length = 178
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 39 LGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVL 81
L +KP++DG+GY I L LK FTVP + V+
Sbjct: 109 LSIKPNADGSGYFISLSVVN--NNLKTNDRFTVPVTTAEFAVM 149
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 22 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISE 76
Y A F YY RP Y V ++ +Q LKD Q +T+P+ E
Sbjct: 442 YNAVFGYYLEVTRP-------------YYERVPKEYRPVQTLKDRQRYTLPEXKE 483
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 22 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISE 76
Y A F YY RP Y V ++ +Q LKD Q +T+P+ E
Sbjct: 442 YNAVFGYYLEVTRP-------------YYERVPKEYRPVQTLKDRQRYTLPEXKE 483
>pdb|2AT2|A Chain A, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|B Chain B, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|C Chain C, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
Length = 300
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 101 VVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQ 154
V AE+ + ++ + +N+ + ++ L+ E R+FK MK+ I Q
Sbjct: 233 TVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQ 286
>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2
pdb|3N1I|A Chain A, Crystal Structure Of A Stwhy2-Ere32 Complex
pdb|3N1J|A Chain A, Crystal Structure Of A Stwhy2-Dt32 Complex
pdb|3N1K|A Chain A, Crystal Structure Of A Stwhy2-Cere32 Complex
pdb|3N1L|A Chain A, Crystal Structure Of A Stwhy2-Rcere32 Complex
Length = 178
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 39 LGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVL 81
L +KP++DG+GY I L LK FTVP + V+
Sbjct: 109 LSIKPNADGSGYFISLSVVN--NNLKTNDRFTVPVTTAEFAVM 149
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 73 KISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLIN 132
+ SE +L ++ + N + PV ++ + + +S + NKE P
Sbjct: 37 RASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFK 96
Query: 133 EECPRLFKNMKDYANIHWEYYQ 154
E CP +F+N+++ I + YQ
Sbjct: 97 EYCPMVFRNLRERFGIDDQDYQ 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,108,540
Number of Sequences: 62578
Number of extensions: 203174
Number of successful extensions: 443
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 28
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)