BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031115
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDKDQIEAGYVLTCVAYPTS 85
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDKIEAGYVLTCVAYPTS 85
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C +CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 KQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120
P+ KVT+ + G+ VP+D+YIL AE Q I LP++CR G C++CA +I +G + Q
Sbjct: 1 PSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQ 60
Query: 121 PEALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 61 SDQSFLDDDQIQAGYVLTCVAYPTS 85
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++ A ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T+KVT+ + G+ VP+DQYIL AE I LP++CR G C++CA ++ SG + Q
Sbjct: 2 TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 61
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 62 DQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T+KVT+ R G VPED+YIL AE Q + LPF+CR G C++CA ++ G++ Q
Sbjct: 2 TYKVTLV-RPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 122 EALGISAELKSKGYALLCVGYPSS 145
+ + + KG+ L CV YP S
Sbjct: 61 DQSFLDDDQIEKGFVLTCVAYPRS 84
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120
T+KVT+ + G+ +D YIL AE + LP++CR G C++CA I SG I Q
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 121 PEALGISAELKSKGYALLCVGYPSS 145
+ + + GY L CV YP+S
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTS 85
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139
VP+DQYIL AE I LP++CR G C++CA ++ SG + Q + + + GY L C
Sbjct: 18 VPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTC 77
Query: 140 VGYPSS 145
V YP+S
Sbjct: 78 VAYPTS 83
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 81 PEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCV 140
PED YIL AE + LP++CR G C+SCA +++SG++ Q + + KG+ L CV
Sbjct: 17 PEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCV 76
Query: 141 GYPSS 145
YP+S
Sbjct: 77 AYPTS 81
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136
EF P+D YIL AE + I LP++CR G C+SCA ++K+G + Q + + + +G+
Sbjct: 15 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWV 74
Query: 137 LLCVGYPSS 145
L C YP S
Sbjct: 75 LTCAAYPVS 83
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
+K+ + ++ G+ DQYIL AE Q + LP++CR G C++CA ++ G + Q +
Sbjct: 2 YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 123 ALGISAELKSKGYALLCVGYPSS 145
+ + SKG+ L CV YP+S
Sbjct: 62 QSFLDEDQISKGFILTCVAYPTS 84
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136
EF +D Y+L AE + I +P++CR G C+SCA ++ SG I Q + + E GY
Sbjct: 15 EFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYV 74
Query: 137 LLCVGYPSS 145
L C YP+S
Sbjct: 75 LTCHAYPTS 83
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136
E VP+D YIL AE I LP++CR G C+SCA ++ SG + Q + + + G+
Sbjct: 15 ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWV 74
Query: 137 LLCVGYPSS 145
L C YP+S
Sbjct: 75 LTCHAYPTS 83
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141
ED+YIL +E QN+ LP++CR G C++CA ++ G++ + + E K Y LLC
Sbjct: 20 EDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTC 79
Query: 142 YPSS 145
YP S
Sbjct: 80 YPKS 83
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141
+D YIL AE + LP++CR G C++CA +I +G + Q + + + GY L CV
Sbjct: 21 DDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVA 80
Query: 142 YPSS 145
YP+S
Sbjct: 81 YPTS 84
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141
+D YIL AE + LP++CR G C++CA +I +G + Q + + + GY L CV
Sbjct: 20 DDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVA 79
Query: 142 YPSS 145
YP+S
Sbjct: 80 YPTS 83
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141
+D YIL AE + LP++CR G C++CA +I +G + Q + + + GY L CV
Sbjct: 20 DDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVA 79
Query: 142 YPSS 145
YP+S
Sbjct: 80 YPTS 83
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139
VP+D+YIL AE + + LP++CR G C++CA ++ SG + + + GY L C
Sbjct: 18 VPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTC 77
Query: 140 VGYPSS 145
V YP+
Sbjct: 78 VAYPTG 83
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQI-KQPEALGISAELKSKGYALL 138
VP+D+YIL AE Q + LP++CR G C++CA ++ SG Q + + + GY L
Sbjct: 18 VPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQSDQSFLDDDQIQAGYILT 77
Query: 139 CVGYPSS 145
CV YP+
Sbjct: 78 CVAYPTG 84
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP-EALGISAELKSKGYALL 138
V E +YIL AE+Q PF+CR G C +CA +K G+I + + E++ K L
Sbjct: 42 VAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLT 101
Query: 139 CVGYPSS 145
C+G P++
Sbjct: 102 CIGSPAA 108
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP-EALGISAELKSKGYALL 138
V E +YIL AE+Q PF+CR G C +CA +K G+I + + E++ K L
Sbjct: 42 VAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLT 101
Query: 139 CVGYPSS 145
C+G P++
Sbjct: 102 CIGSPAA 108
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139
VPE IL AE LPF+CR G C+SC ++ SG + + E + +G+ L C
Sbjct: 17 VPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTC 76
Query: 140 VGYPSS 145
+ P S
Sbjct: 77 IAIPES 82
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP-EALGISAELKSKGYALL 138
V E +YIL AE+Q PF+CR G C +CA + G I + + E++ K L
Sbjct: 42 VNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLT 101
Query: 139 CVGYPSS 145
C+G P +
Sbjct: 102 CIGSPDA 108
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139
+ E+ IL AE I LPF+C G C+SC ++ G++ Q + + + E KG+ALLC
Sbjct: 20 IDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLC 79
Query: 140 VGYPSS 145
V YP S
Sbjct: 80 VTYPRS 85
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 92 SQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 145
S+ LP +C+ G C++C +I SG + Q E + E +GY L C+ P S
Sbjct: 28 SEKADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPES 81
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 60 IPTHKVTVHDRFRGVVHEFL-VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQI 118
+ H+V + +F V F+ + + + + A Q I +P CR G C +C +SG
Sbjct: 1 MSNHQVAL--QFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNY 58
Query: 119 KQPE----ALGISAELKSKGYALLCVGYPSS 145
PE ++ E +GY L C P+S
Sbjct: 59 DMPEDNYIEDALTPEEAQQGYVLACQCRPTS 89
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 34.7 bits (78), Expect = 0.029, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEALG-ISAELKSKG 134
E + E+ ++ I + C G C C VR+ GQ K+ E+ G + E ++G
Sbjct: 14 EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQ-KRVESYGKLKQEEIAQG 72
Query: 135 YALLCVGYPSS 145
Y L C YP S
Sbjct: 73 YVLACQTYPES 83
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 78 FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG--QIKQPEALGISAELKSKGY 135
F D+ ++ A QNI L +CR G C +C G +K + E + +G
Sbjct: 19 FECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGL 78
Query: 136 ALLCVGYPSS 145
LLC YP +
Sbjct: 79 VLLCRTYPKT 88
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 78 FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQ 117
F +P ++ IL N+ +P +C G C SC + SG+
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGE 288
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 ITLPFACRHGCCTSCAVRIKSG 116
+T +CR G C SCA+ I G
Sbjct: 59 LTFRRSCREGICGSCAMNINGG 80
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 ITLPFACRHGCCTSCAVRIKSG 116
+T +CR G C SCA+ I G
Sbjct: 59 LTFRRSCREGICGSCAMNINGG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,460
Number of Sequences: 62578
Number of extensions: 157085
Number of successful extensions: 325
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 42
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)