Query 031115
Match_columns 165
No_of_seqs 234 out of 1218
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00134 petF ferredoxin; Vali 99.9 6.1E-26 1.3E-30 165.4 11.3 99 60-158 1-99 (99)
2 TIGR02008 fdx_plant ferredoxin 99.9 4.1E-25 8.9E-30 160.2 10.8 96 62-158 2-97 (97)
3 PLN03136 Ferredoxin; Provision 99.9 2.9E-24 6.3E-29 167.3 12.6 109 47-157 34-147 (148)
4 PTZ00038 ferredoxin; Provision 99.9 2.2E-23 4.8E-28 168.1 13.2 99 59-159 92-190 (191)
5 PRK10713 2Fe-2S ferredoxin Yfa 99.9 4.1E-22 9E-27 141.1 10.0 82 63-151 2-84 (84)
6 PRK07609 CDP-6-deoxy-delta-3,4 99.8 1.2E-19 2.7E-24 155.2 10.9 91 63-157 3-95 (339)
7 PRK11872 antC anthranilate dio 99.8 5.1E-19 1.1E-23 152.4 11.6 93 63-156 3-97 (340)
8 cd00207 fer2 2Fe-2S iron-sulfu 99.8 6.8E-19 1.5E-23 122.0 9.3 78 73-150 7-84 (84)
9 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 1.3E-18 2.8E-23 149.7 11.5 89 61-151 261-351 (352)
10 PRK10684 HCP oxidoreductase, N 99.8 9.8E-19 2.1E-23 149.8 10.6 85 62-150 248-332 (332)
11 COG0633 Fdx Ferredoxin [Energy 99.8 5.5E-19 1.2E-23 129.5 7.1 79 76-154 15-98 (102)
12 PLN02593 adrenodoxin-like ferr 99.8 1.3E-18 2.7E-23 130.6 8.6 91 64-155 2-104 (117)
13 PRK05713 hypothetical protein; 99.8 2E-18 4.3E-23 146.9 9.9 77 76-152 9-85 (312)
14 TIGR02007 fdx_isc ferredoxin, 99.8 4.1E-18 8.9E-23 126.2 9.8 81 76-156 16-104 (110)
15 TIGR01941 nqrF NADH:ubiquinone 99.8 4.7E-18 1E-22 149.6 10.6 93 60-153 27-122 (405)
16 PTZ00490 Ferredoxin superfamil 99.7 1.4E-17 3E-22 129.2 9.9 94 61-155 34-139 (143)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.7 7.6E-18 1.7E-22 116.0 6.3 72 72-144 4-78 (78)
18 PRK05464 Na(+)-translocating N 99.7 7.6E-17 1.6E-21 142.1 10.8 78 76-153 46-126 (409)
19 COG2871 NqrF Na+-transporting 99.5 8.8E-15 1.9E-19 125.1 6.8 90 62-154 36-128 (410)
20 COG3894 Uncharacterized metal- 99.5 2.9E-14 6.3E-19 128.5 6.0 92 63-160 2-95 (614)
21 KOG3309 Ferredoxin [Energy pro 99.2 6.8E-11 1.5E-15 92.3 7.8 94 62-156 43-147 (159)
22 PRK07569 bidirectional hydroge 99.1 1.3E-10 2.9E-15 96.0 7.7 73 60-154 1-79 (234)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.0 3E-10 6.4E-15 80.1 4.6 68 64-152 3-80 (82)
24 PRK08166 NADH dehydrogenase su 98.9 2.5E-09 5.3E-14 102.3 7.5 75 63-154 2-82 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.7 4.6E-08 9.9E-13 83.8 7.7 73 60-154 66-145 (297)
26 PRK06259 succinate dehydrogena 98.6 9.6E-08 2.1E-12 86.0 5.8 60 76-153 23-88 (486)
27 PRK12814 putative NADPH-depend 98.5 3.8E-07 8.3E-12 85.2 7.3 72 61-154 2-79 (652)
28 COG1034 NuoG NADH dehydrogenas 98.4 6.6E-07 1.4E-11 84.4 7.5 70 63-154 2-77 (693)
29 PRK09130 NADH dehydrogenase su 98.4 1E-06 2.3E-11 83.0 7.4 71 63-154 2-78 (687)
30 TIGR01973 NuoG NADH-quinone ox 98.3 2.1E-06 4.5E-11 79.5 7.4 66 72-154 4-75 (603)
31 PRK07860 NADH dehydrogenase su 98.3 2.8E-06 6E-11 81.3 8.1 75 62-158 4-85 (797)
32 PF13085 Fer2_3: 2Fe-2S iron-s 98.2 1.2E-06 2.6E-11 65.3 4.2 52 76-145 21-78 (110)
33 PRK08493 NADH dehydrogenase su 98.2 2.9E-06 6.3E-11 81.5 7.0 68 63-154 2-75 (819)
34 PRK13552 frdB fumarate reducta 98.2 2.6E-06 5.7E-11 71.0 4.9 42 75-117 25-72 (239)
35 PRK09129 NADH dehydrogenase su 98.1 4.7E-06 1E-10 79.1 6.9 70 63-154 2-77 (776)
36 PRK08640 sdhB succinate dehydr 98.1 2E-06 4.4E-11 72.1 3.3 42 75-117 24-78 (249)
37 PRK12577 succinate dehydrogena 98.0 1E-05 2.2E-10 70.2 5.7 42 75-117 20-67 (329)
38 PRK11433 aldehyde oxidoreducta 97.9 2.7E-05 5.9E-10 64.4 6.9 53 62-117 49-103 (217)
39 PRK12386 fumarate reductase ir 97.9 9.2E-06 2E-10 68.4 4.1 42 75-117 21-68 (251)
40 PRK07570 succinate dehydrogena 97.9 1.1E-05 2.4E-10 67.8 3.4 42 76-118 22-74 (250)
41 PRK09908 xanthine dehydrogenas 97.8 6.5E-05 1.4E-09 59.4 6.7 51 64-117 8-59 (159)
42 PLN00129 succinate dehydrogena 97.8 1.8E-05 3.9E-10 67.5 3.5 41 76-117 62-111 (276)
43 PRK12576 succinate dehydrogena 97.7 5E-05 1.1E-09 64.7 5.3 42 75-117 26-73 (279)
44 PRK12575 succinate dehydrogena 97.7 2.3E-05 5E-10 65.3 3.2 58 76-151 23-91 (235)
45 PRK12385 fumarate reductase ir 97.7 2.7E-05 5.8E-10 65.1 2.8 41 76-117 27-73 (244)
46 PRK05950 sdhB succinate dehydr 97.7 4.9E-05 1.1E-09 62.7 4.2 42 76-118 20-68 (232)
47 COG0479 FrdB Succinate dehydro 97.7 3.2E-05 7E-10 64.6 3.0 41 76-117 22-68 (234)
48 COG3383 Uncharacterized anaero 97.5 0.00024 5.2E-09 67.8 7.0 68 62-153 5-78 (978)
49 TIGR03193 4hydroxCoAred 4-hydr 97.4 0.0004 8.6E-09 54.4 6.1 45 72-117 7-53 (148)
50 TIGR00384 dhsB succinate dehyd 97.4 0.00016 3.4E-09 59.2 3.5 41 76-117 17-63 (220)
51 TIGR03198 pucE xanthine dehydr 97.0 0.0021 4.5E-08 50.5 6.2 45 72-117 9-55 (151)
52 COG2080 CoxS Aerobic-type carb 96.9 0.0032 7E-08 49.7 6.7 45 72-117 9-55 (156)
53 TIGR02963 xanthine_xdhA xanthi 96.0 0.011 2.4E-07 53.8 5.2 42 72-113 6-50 (467)
54 PRK09800 putative hypoxanthine 95.9 0.02 4.2E-07 56.5 6.5 45 72-117 8-54 (956)
55 TIGR03311 Se_dep_Molyb_1 selen 95.4 0.03 6.4E-07 54.5 5.8 43 72-117 6-50 (848)
56 TIGR03313 Se_sel_red_Mo probab 95.2 0.033 7.1E-07 54.9 5.3 45 72-117 4-50 (951)
57 KOG2282 NADH-ubiquinone oxidor 94.7 0.044 9.6E-07 50.9 4.5 42 72-115 38-85 (708)
58 PLN00192 aldehyde oxidase 94.3 0.11 2.3E-06 53.1 6.5 48 65-114 6-56 (1344)
59 TIGR02969 mam_aldehyde_ox alde 93.7 0.11 2.5E-06 52.8 5.6 43 72-114 8-53 (1330)
60 TIGR01372 soxA sarcosine oxida 92.1 0.6 1.3E-05 46.1 7.9 74 63-153 11-95 (985)
61 KOG3049 Succinate dehydrogenas 89.5 0.34 7.4E-06 40.7 3.0 33 82-114 75-113 (288)
62 PLN02906 xanthine dehydrogenas 79.8 2.1 4.5E-05 43.9 4.0 32 83-114 1-33 (1319)
63 PRK00054 dihydroorotate dehydr 76.2 1.9 4.2E-05 35.3 2.1 31 85-115 195-231 (250)
64 cd06219 DHOD_e_trans_like1 FAD 75.6 2.5 5.4E-05 34.6 2.7 30 86-116 195-230 (248)
65 PRK08345 cytochrome-c3 hydroge 73.4 2 4.3E-05 36.3 1.6 33 84-116 225-266 (289)
66 COG4630 XdhA Xanthine dehydrog 73.1 9.1 0.0002 34.8 5.7 49 63-113 7-58 (493)
67 cd06220 DHOD_e_trans_like2 FAD 71.0 3 6.5E-05 33.7 2.1 30 85-114 181-216 (233)
68 PF10418 DHODB_Fe-S_bind: Iron 70.9 2.3 5E-05 26.0 1.0 18 99-116 4-21 (40)
69 cd06218 DHOD_e_trans FAD/NAD b 70.5 4.7 0.0001 33.0 3.2 31 85-115 194-230 (246)
70 PRK01777 hypothetical protein; 68.1 18 0.00038 26.1 5.3 24 75-98 18-41 (95)
71 PRK05659 sulfur carrier protei 66.5 12 0.00027 24.2 4.0 27 64-96 2-28 (66)
72 cd06221 sulfite_reductase_like 65.1 4.3 9.3E-05 33.4 1.9 28 85-112 204-240 (253)
73 PRK05802 hypothetical protein; 62.5 5.5 0.00012 34.4 2.1 29 86-114 269-305 (320)
74 PRK06222 ferredoxin-NADP(+) re 62.4 6.5 0.00014 33.0 2.5 28 86-113 196-229 (281)
75 PRK12778 putative bifunctional 55.6 10 0.00023 36.2 2.9 28 86-113 196-229 (752)
76 PRK07440 hypothetical protein; 55.3 36 0.00079 22.8 4.8 30 62-97 4-33 (70)
77 PRK08364 sulfur carrier protei 54.3 29 0.00063 23.1 4.2 36 60-97 2-37 (70)
78 cd01760 RBD Ubiquitin-like dom 53.7 24 0.00052 24.1 3.7 38 72-116 8-47 (72)
79 TIGR02911 sulfite_red_B sulfit 51.2 6.2 0.00013 32.7 0.6 27 86-112 205-240 (261)
80 PF03658 Ub-RnfH: RnfH family 48.7 23 0.0005 25.1 3.1 22 75-96 15-36 (84)
81 cd06192 DHOD_e_trans_like FAD/ 47.9 10 0.00022 30.6 1.4 17 98-114 213-229 (243)
82 PF03990 DUF348: Domain of unk 47.6 59 0.0013 19.6 4.5 31 65-98 2-32 (43)
83 PRK05863 sulfur carrier protei 46.5 52 0.0011 21.5 4.4 28 64-97 2-29 (65)
84 PRK08221 anaerobic sulfite red 46.5 7.8 0.00017 32.1 0.4 28 85-112 206-242 (263)
85 PRK06083 sulfur carrier protei 45.9 53 0.0012 23.0 4.6 31 60-96 16-46 (84)
86 PRK06944 sulfur carrier protei 42.5 52 0.0011 21.1 3.9 27 64-96 2-28 (65)
87 KOG0430 Xanthine dehydrogenase 41.5 45 0.00097 34.3 4.8 36 80-115 17-54 (1257)
88 COG1018 Hmp Flavodoxin reducta 39.1 23 0.00051 29.9 2.2 47 43-91 218-266 (266)
89 smart00455 RBD Raf-like Ras-bi 39.1 47 0.001 22.4 3.3 21 72-92 8-28 (70)
90 PRK12779 putative bifunctional 38.7 27 0.00058 34.8 2.9 28 86-113 862-895 (944)
91 PF10531 SLBB: SLBB domain; I 33.4 37 0.0008 21.7 2.0 23 76-98 12-34 (59)
92 cd01813 UBP_N UBP ubiquitin pr 31.0 95 0.0021 20.8 3.8 24 64-89 2-25 (74)
93 PRK08053 sulfur carrier protei 30.9 1.3E+02 0.0028 19.6 4.4 28 64-97 2-29 (66)
94 PRK06567 putative bifunctional 28.9 22 0.00048 35.9 0.5 33 97-146 970-1003(1028)
95 cd00118 LysM Lysin domain, fou 28.3 57 0.0012 17.7 2.1 21 77-97 2-22 (46)
96 PF01476 LysM: LysM domain; I 28.0 57 0.0012 18.9 2.1 19 79-97 2-20 (44)
97 cd01791 Ubl5 UBL5 ubiquitin-li 27.6 1.3E+02 0.0027 20.3 4.0 27 62-89 1-27 (73)
98 PRK06437 hypothetical protein; 27.3 1.2E+02 0.0027 20.0 3.8 24 73-96 10-33 (67)
99 COG2104 ThiS Sulfur transfer p 27.0 1.5E+02 0.0033 19.9 4.3 22 76-97 10-31 (68)
100 cd01817 RGS12_RBD Ubiquitin do 26.5 85 0.0018 21.8 3.0 37 72-117 8-48 (73)
101 PF02824 TGS: TGS domain; Int 25.6 1.1E+02 0.0024 19.6 3.3 36 72-117 7-42 (60)
102 PF02196 RBD: Raf-like Ras-bin 25.6 2E+02 0.0043 19.3 4.7 37 72-115 9-47 (71)
103 PRK12775 putative trifunctiona 24.1 64 0.0014 32.4 2.7 28 86-113 196-229 (1006)
104 PF04225 OapA: Opacity-associa 23.9 76 0.0016 22.1 2.4 22 76-97 3-24 (85)
105 TIGR02899 spore_safA spore coa 23.2 53 0.0011 18.5 1.3 18 80-97 1-18 (44)
106 PF14451 Ub-Mut7C: Mut7-C ubiq 22.5 1.5E+02 0.0033 20.6 3.7 24 75-98 24-47 (81)
107 COG4070 Predicted peptidyl-pro 22.2 1.2E+02 0.0026 27.9 3.8 26 72-99 7-32 (512)
108 cd01818 TIAM1_RBD Ubiquitin do 21.4 1.2E+02 0.0025 21.4 2.8 21 72-92 8-28 (77)
109 cd01995 ExsB ExsB is a transcr 20.5 71 0.0015 24.2 1.8 29 82-110 125-158 (169)
110 PRK06549 acetyl-CoA carboxylas 20.1 1E+02 0.0022 23.5 2.6 20 59-82 1-20 (130)
No 1
>CHL00134 petF ferredoxin; Validated
Probab=99.93 E-value=6.1e-26 Score=165.39 Aligned_cols=99 Identities=35% Similarity=0.689 Sum_probs=89.3
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEee
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaC 139 (165)
|..++|+|.++.+|..+.|++++|+|||++|+++||+++++|+.|.||+|++++++|.+.+.+...|+.+++++||+|+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C 80 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence 45689999764456667899999999999999999999999999999999999999999887666688888999999999
Q ss_pred eeEeCCCeEEEeCCchHHH
Q 031115 140 VGYPSSDVEVETQDEDEVK 158 (165)
Q Consensus 140 qa~~~sDi~Ielp~~~~~~ 158 (165)
+++|.+|++|++|+.+++|
T Consensus 81 ~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 81 VAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eCEECCCeEEEeccccccC
Confidence 9999999999999988765
No 2
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.92 E-value=4.1e-25 Score=160.19 Aligned_cols=96 Identities=38% Similarity=0.745 Sum_probs=86.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.++|+|.+. +|..++|.+++|+||||+++++||.||++|++|.||+|+++|++|.+.+.+...|+++++++|++|+||+
T Consensus 2 ~~~v~~~~~-~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~ 80 (97)
T TIGR02008 2 TYKVTLVNP-DGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80 (97)
T ss_pred eEEEEEEEC-CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeC
Confidence 578888542 5666899999999999999999999999999999999999999999987665668888899999999999
Q ss_pred EeCCCeEEEeCCchHHH
Q 031115 142 YPSSDVEVETQDEDEVK 158 (165)
Q Consensus 142 ~~~sDi~Ielp~~~~~~ 158 (165)
++.+|++|++++++++|
T Consensus 81 ~~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 81 YPTSDCTIETHKEEDLY 97 (97)
T ss_pred EECCCeEEEeccccccC
Confidence 99999999999988775
No 3
>PLN03136 Ferredoxin; Provisional
Probab=99.92 E-value=2.9e-24 Score=167.26 Aligned_cols=109 Identities=39% Similarity=0.684 Sum_probs=93.5
Q ss_pred cccccccCC-----CCCCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCc
Q 031115 47 QTTAGVNGS-----YSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121 (165)
Q Consensus 47 ~~~~~~~~~-----~~p~~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~ 121 (165)
+..||.+.. +...|..++|+|... +| .++|++++|++|||+++++||++||+|+.|.||+|++++++|.+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~m~~~~V~l~~~-~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~ 111 (148)
T PLN03136 34 QSLFGLKSSTARGGRVTAMATYKVKFITP-EG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQS 111 (148)
T ss_pred ccccccccccccCcccceeeeEEEEEecC-CC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccC
Confidence 445666432 245567899999532 23 47899999999999999999999999999999999999999999987
Q ss_pred ccCCCChhhhcCCeEEeeeeEeCCCeEEEeCCchHH
Q 031115 122 EALGISAELKSKGYALLCVGYPSSDVEVETQDEDEV 157 (165)
Q Consensus 122 e~~~Ls~~e~~~G~rLaCqa~~~sDi~Ielp~~~~~ 157 (165)
+...|++++.++||+|+||+++.+|++|+++.++++
T Consensus 112 ~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l 147 (148)
T PLN03136 112 DQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAI 147 (148)
T ss_pred cccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhc
Confidence 777799999999999999999999999999999875
No 4
>PTZ00038 ferredoxin; Provisional
Probab=99.90 E-value=2.2e-23 Score=168.08 Aligned_cols=99 Identities=35% Similarity=0.682 Sum_probs=89.0
Q ss_pred CCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEe
Q 031115 59 SIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALL 138 (165)
Q Consensus 59 ~~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLa 138 (165)
.+..|+|+|... +| .+++++++|+||||+|+++||.+|++|+.|.||+|+++|++|++.+.+...|+++++++||+|+
T Consensus 92 ~~~~~~Vt~~~~-~g-~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~La 169 (191)
T PTZ00038 92 NPLFYNITLQTP-DG-EKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLL 169 (191)
T ss_pred CCceEEEEEEeC-CC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEE
Confidence 345689999743 33 2789999999999999999999999999999999999999999988877789999999999999
Q ss_pred eeeEeCCCeEEEeCCchHHHH
Q 031115 139 CVGYPSSDVEVETQDEDEVKY 159 (165)
Q Consensus 139 Cqa~~~sDi~Ielp~~~~~~~ 159 (165)
||+++.+|++|+++++++++.
T Consensus 170 Cqa~p~sDi~Ie~p~e~~~~~ 190 (191)
T PTZ00038 170 CTCYPKSDCTIETHKEDELHD 190 (191)
T ss_pred eeCEECCCeEEecCChHHhcc
Confidence 999999999999999988763
No 5
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.88 E-value=4.1e-22 Score=141.06 Aligned_cols=82 Identities=28% Similarity=0.548 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCcEEEEEeCC-CChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 63 HKVTVHDRFRGVVHEFLVPE-DQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~-getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
++|+|.+ +| +.|++++ |+|||+|++++||++||+|+.|.||+|++++++|++++.+.. ..++++|++|+|++
T Consensus 2 ~~v~~~~--~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~ 74 (84)
T PRK10713 2 ARVTLRI--TG--TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCC 74 (84)
T ss_pred CEEEEEe--CC--cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeC
Confidence 5677775 45 7899986 599999999999999999999999999999999999875332 23567899999999
Q ss_pred EeCCCeEEEe
Q 031115 142 YPSSDVEVET 151 (165)
Q Consensus 142 ~~~sDi~Iel 151 (165)
+|.+|++|++
T Consensus 75 ~p~sd~~ie~ 84 (84)
T PRK10713 75 RAKGDIEIEM 84 (84)
T ss_pred EECCCEEEeC
Confidence 9999999874
No 6
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.81 E-value=1.2e-19 Score=155.21 Aligned_cols=91 Identities=34% Similarity=0.641 Sum_probs=81.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCc--ccCCCChhhhcCCeEEeee
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP--EALGISAELKSKGYALLCV 140 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~--e~~~Ls~~e~~~G~rLaCq 140 (165)
++|+|.+ .| +++++++|+||||+++++||.++++|+.|.||+|++++++|.+.+. +...|+++++++|++|+||
T Consensus 3 ~~v~~~~--~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 78 (339)
T PRK07609 3 FQVTLQP--SG--RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCC 78 (339)
T ss_pred EEEEEec--CC--eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEee
Confidence 6788875 45 7899999999999999999999999999999999999999999765 5567898889999999999
Q ss_pred eEeCCCeEEEeCCchHH
Q 031115 141 GYPSSDVEVETQDEDEV 157 (165)
Q Consensus 141 a~~~sDi~Ielp~~~~~ 157 (165)
+++.+|++|+++...++
T Consensus 79 ~~~~~d~~i~~~~~~~~ 95 (339)
T PRK07609 79 AKPLSDLVLEAREVPAL 95 (339)
T ss_pred CEECCCEEEEecccccc
Confidence 99999999999876553
No 7
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.79 E-value=5.1e-19 Score=152.37 Aligned_cols=93 Identities=28% Similarity=0.400 Sum_probs=80.7
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCC--cccCCCChhhhcCCeEEeee
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYALLCV 140 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~G~rLaCq 140 (165)
++|++.+. +|....|++++|+||||+++++|+.+|++|+.|.||+|+++|++|.+.. .+...|+++++++|++|+||
T Consensus 3 ~~v~~~~~-~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 81 (340)
T PRK11872 3 HKVALSFA-DGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQ 81 (340)
T ss_pred eEEEEEec-CCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEee
Confidence 67777552 5766779999999999999999999999999999999999999999864 34556888888999999999
Q ss_pred eEeCCCeEEEeCCchH
Q 031115 141 GYPSSDVEVETQDEDE 156 (165)
Q Consensus 141 a~~~sDi~Ielp~~~~ 156 (165)
+++.+|++|+++...+
T Consensus 82 ~~~~~d~~i~~~~~~~ 97 (340)
T PRK11872 82 TRVKSDAAFYFDFDSS 97 (340)
T ss_pred CEECCceEEEecCccc
Confidence 9999999999886543
No 8
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.79 E-value=6.8e-19 Score=121.95 Aligned_cols=78 Identities=29% Similarity=0.615 Sum_probs=70.0
Q ss_pred CcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCCCeEEE
Q 031115 73 GVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVE 150 (165)
Q Consensus 73 G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sDi~Ie 150 (165)
|..+++.+++|+|||++++++|+.+++.|+.|.||+|+|+|.+|.+.+.....+...+..+++||+||+++.+|++|+
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 334899999999999999999999999999999999999999999987655566677788999999999999999874
No 9
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.78 E-value=1.3e-18 Score=149.66 Aligned_cols=89 Identities=30% Similarity=0.572 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCcEEE-EEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEee
Q 031115 61 PTHKVTVHDRFRGVVHE-FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~-~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaC 139 (165)
..++|+|.. +|.... +++++|+|||++++++||+++++|+.|.||+|++++++|.+.+.+...|+++++++|++|+|
T Consensus 261 ~~~~v~~~~--~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C 338 (352)
T TIGR02160 261 DVSKVTVTL--DGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTC 338 (352)
T ss_pred CceEEEEEE--CCceEEEEecCCCCcHHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEe
Confidence 346788876 564443 67899999999999999999999999999999999999999987766789889999999999
Q ss_pred eeEeCCC-eEEEe
Q 031115 140 VGYPSSD-VEVET 151 (165)
Q Consensus 140 qa~~~sD-i~Iel 151 (165)
|+++.+| ++|++
T Consensus 339 ~~~~~~~~~~~~~ 351 (352)
T TIGR02160 339 QAYPLSDKLVVDY 351 (352)
T ss_pred eEEECCCcEEEec
Confidence 9999987 88764
No 10
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.78 E-value=9.8e-19 Score=149.76 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.++|++.. .| +++++++|+|||++|+++||+++++|+.|.||+|++++++|.+.+.....|+++++++|++|+||+
T Consensus 248 ~~~v~~~~--~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~ 323 (332)
T PRK10684 248 GLTFTKLQ--PA--REFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSC 323 (332)
T ss_pred ceEEEEec--CC--EEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeC
Confidence 45666653 45 789999999999999999999999999999999999999999987766779999999999999999
Q ss_pred EeCCCeEEE
Q 031115 142 YPSSDVEVE 150 (165)
Q Consensus 142 ~~~sDi~Ie 150 (165)
+|.+|++|+
T Consensus 324 ~~~~d~~i~ 332 (332)
T PRK10684 324 HPQGDLVLA 332 (332)
T ss_pred EECCCeEEC
Confidence 999998873
No 11
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.77 E-value=5.5e-19 Score=129.53 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=62.9
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecC--ccCCc---ccCCCChhhhcCCeEEeeeeEeCCCeEEE
Q 031115 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG--QIKQP---EALGISAELKSKGYALLCVGYPSSDVEVE 150 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G--~v~~~---e~~~Ls~~e~~~G~rLaCqa~~~sDi~Ie 150 (165)
..+.++.|+||||+|+++||+++|+||.|.||+|+|+|++| .+.+. +...|.......++||+||+++.+|+.|+
T Consensus 15 ~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i~ 94 (102)
T COG0633 15 VTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIE 94 (102)
T ss_pred eEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcceE
Confidence 45556669999999999999999999999999999999999 65543 22334434456779999999999998866
Q ss_pred eCCc
Q 031115 151 TQDE 154 (165)
Q Consensus 151 lp~~ 154 (165)
+-..
T Consensus 95 ~~~~ 98 (102)
T COG0633 95 VVEE 98 (102)
T ss_pred EEec
Confidence 5443
No 12
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.77 E-value=1.3e-18 Score=130.60 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccC-------CcccCCCC-hhhhcCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIK-------QPEALGIS-AELKSKG 134 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~-------~~e~~~Ls-~~e~~~G 134 (165)
+|+|.. .+|..+++++..|+|||++++++|+++++.|+ .|.||+|+|+|+++... ..|...|+ ..+..++
T Consensus 2 ~V~fi~-~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 2 SVTFVD-KDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred EEEEEc-CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 677754 36888999999999999999999999999999 79999999999654321 12445565 3456789
Q ss_pred eEEeeeeEeC---CCeEEEeCCch
Q 031115 135 YALLCVGYPS---SDVEVETQDED 155 (165)
Q Consensus 135 ~rLaCqa~~~---sDi~Ielp~~~ 155 (165)
+|||||+.+. ++++|++|+..
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~ 104 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAAT 104 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchh
Confidence 9999999998 46999999775
No 13
>PRK05713 hypothetical protein; Provisional
Probab=99.76 E-value=2e-18 Score=146.88 Aligned_cols=77 Identities=26% Similarity=0.580 Sum_probs=71.7
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCCCeEEEeC
Q 031115 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQ 152 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sDi~Ielp 152 (165)
++|++++|+||||+|+++||.++++|+.|.||+|++++++|.+.......|+++++++|+||+||+++.+|++|+++
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~ 85 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF 85 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence 78999999999999999999999999999999999999999987554566888888999999999999999999987
No 14
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.76 E-value=4.1e-18 Score=126.21 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=66.7
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCccc-----CCCChh-hhcCCeEEeeeeEeC-CCe
Q 031115 76 HEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEA-----LGISAE-LKSKGYALLCVGYPS-SDV 147 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e~-----~~Ls~~-e~~~G~rLaCqa~~~-sDi 147 (165)
++|++++|+|||++++++|++|++.|+ .|.||+|+|+|.+|....... ..|+.. +..+||||+||+++. +|+
T Consensus 16 ~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~~~dl 95 (110)
T TIGR02007 16 AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVADEDL 95 (110)
T ss_pred eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEcCCCE
Confidence 889999999999999999999999999 799999999999996543322 223222 346789999999987 599
Q ss_pred EEEeCCchH
Q 031115 148 EVETQDEDE 156 (165)
Q Consensus 148 ~Ielp~~~~ 156 (165)
+|+++....
T Consensus 96 ~v~~~~~~~ 104 (110)
T TIGR02007 96 VVEIPKYTI 104 (110)
T ss_pred EEEECchhh
Confidence 999997654
No 15
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.75 E-value=4.7e-18 Score=149.59 Aligned_cols=93 Identities=24% Similarity=0.372 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCC--cccCCCChhhhcCCeE
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYA 136 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~G~r 136 (165)
|.+++|+|.. ++|..+++++++|+|||++++++|+.+++.|+ .|.||+|+|+|.+|.+.. .+...|++++.++|+|
T Consensus 27 ~~~~~v~v~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~r 105 (405)
T TIGR01941 27 VSSGDITIGI-NDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWR 105 (405)
T ss_pred cccccEEEEE-cCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcE
Confidence 4456666665 25666899999999999999999999999999 689999999999998754 3456788888899999
Q ss_pred EeeeeEeCCCeEEEeCC
Q 031115 137 LLCVGYPSSDVEVETQD 153 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~ 153 (165)
|+||+.+.+|++|+++.
T Consensus 106 LaCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 106 LSCQVKVKQDMSIEIPE 122 (405)
T ss_pred EEeeCEECCCEEEEECc
Confidence 99999999999999874
No 16
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.74 E-value=1.4e-17 Score=129.18 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=78.7
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CCCCCCCCC-ceeccCceEEEecCccCC------cccCCCChh-hh
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-LK 131 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~~-e~ 131 (165)
..++|+|.. .+|..+++++++|+|||+++.++ |++|++.|+ .|.||+|+|+|.+|.... .|...|+.. +.
T Consensus 34 g~v~I~~~~-~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~ 112 (143)
T PTZ00490 34 GKVKVCVKK-RDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDV 112 (143)
T ss_pred CcEEEEEEc-CCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccC
Confidence 368899987 47988999999999999999995 799999999 999999999999875332 245567665 67
Q ss_pred cCCeEEeeeeEeCC---CeEEEeCCch
Q 031115 132 SKGYALLCVGYPSS---DVEVETQDED 155 (165)
Q Consensus 132 ~~G~rLaCqa~~~s---Di~Ielp~~~ 155 (165)
.+++||+||..+.. +++|++|+..
T Consensus 113 ~~gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 113 KETSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred CCCcEEeeeEEEecCCCCEEEEeCccc
Confidence 89999999999985 5699999764
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.73 E-value=7.6e-18 Score=115.97 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCCh-HHHHHHHC-CCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCe-EEeeeeEeC
Q 031115 72 RGVVHEFLVPEDQY-ILHTAESQ-NITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGY-ALLCVGYPS 144 (165)
Q Consensus 72 ~G~~~~~~v~~get-LLeaa~~~-GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~-rLaCqa~~~ 144 (165)
+|+.++|++++|++ ||++|+++ |+.++++|+.|.||+|+|+|++|++ +.....++++++++++ ||+||++|+
T Consensus 4 ~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 4 NGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp TTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred CCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 57778999999999 99999999 9999999998889999999999998 4334556666666665 799999874
No 18
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.70 E-value=7.6e-17 Score=142.10 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=70.8
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCc--ccCCCChhhhcCCeEEeeeeEeCCCeEEEeC
Q 031115 76 HEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP--EALGISAELKSKGYALLCVGYPSSDVEVETQ 152 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~--e~~~Ls~~e~~~G~rLaCqa~~~sDi~Ielp 152 (165)
+++++++|+||||+++++|+.+++.|+ .|.||+|+|++++|.+... +...|+++++++|+||+||+++.+|++|+++
T Consensus 46 ~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~~ie~~ 125 (409)
T PRK05464 46 KTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDMKIEVP 125 (409)
T ss_pred EEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCEEEEEC
Confidence 789999999999999999999999999 6999999999999987543 4556888888999999999999999999987
Q ss_pred C
Q 031115 153 D 153 (165)
Q Consensus 153 ~ 153 (165)
.
T Consensus 126 ~ 126 (409)
T PRK05464 126 E 126 (409)
T ss_pred c
Confidence 4
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.54 E-value=8.8e-15 Score=125.06 Aligned_cols=90 Identities=26% Similarity=0.407 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCC--cccCCCChhhhcCCeEEe
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYALL 138 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~G~rLa 138 (165)
..+|.|+. ..++++++++|.+||.++..+||.|++.|| .|.||.|+|+|++|.-+. .|...++..+.++||||+
T Consensus 36 d~ti~IN~---d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLs 112 (410)
T COG2871 36 DITIKING---DPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLS 112 (410)
T ss_pred ceEEEeCC---ChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEE
Confidence 35566643 345899999999999999999999999999 999999999999886543 356677888899999999
Q ss_pred eeeEeCCCeEEEeCCc
Q 031115 139 CVGYPSSDVEVETQDE 154 (165)
Q Consensus 139 Cqa~~~sDi~Ielp~~ 154 (165)
||+.+..|+.|++|++
T Consensus 113 CQ~~Vk~dm~levpEe 128 (410)
T COG2871 113 CQVNVKHDMDLEVPEE 128 (410)
T ss_pred EEecccccceeechHH
Confidence 9999999999999864
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.49 E-value=2.9e-14 Score=128.49 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCc-ccCCCChhhhcCCeEEeee
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP-EALGISAELKSKGYALLCV 140 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~-e~~~Ls~~e~~~G~rLaCq 140 (165)
..|+|.| +| +..+ ++|+|||++|++.|+.|.+.|| +|.||+|+|.|.+|..... +.++ ..-.++.||||+||
T Consensus 2 p~v~f~p--sg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~ 75 (614)
T COG3894 2 PLVTFMP--SG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQ 75 (614)
T ss_pred ceeEeec--CC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeee
Confidence 5689998 57 6677 9999999999999999999999 9999999999999975322 1111 11234679999999
Q ss_pred eEeCCCeEEEeCCchHHHHH
Q 031115 141 GYPSSDVEVETQDEDEVKYK 160 (165)
Q Consensus 141 a~~~sDi~Ielp~~~~~~~~ 160 (165)
+++.+|++|.+|+++.+-+-
T Consensus 76 ~~v~gd~~i~ip~es~l~~q 95 (614)
T COG3894 76 AQVLGDLVIFIPPESRLERQ 95 (614)
T ss_pred hhhcCceEEEcCchhhHHHH
Confidence 99999999999999887553
No 21
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.19 E-value=6.8e-11 Score=92.34 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=75.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCC------cccCCCChh-hhcC
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-LKSK 133 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~~-e~~~ 133 (165)
.++|+|.. .+|.++.+.+..|+|||++|.++||+++..|. .-.|.+|+|.|..-.... .|...|+.+ .+.+
T Consensus 43 ~i~Itfv~-~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~ 121 (159)
T KOG3309|consen 43 DIKITFVD-PDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTE 121 (159)
T ss_pred eEEEEEEC-CCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcccc
Confidence 38889887 48999999999999999999999999999999 889999999998654432 133333322 3567
Q ss_pred CeEEeeeeEeCC---CeEEEeCCchH
Q 031115 134 GYALLCVGYPSS---DVEVETQDEDE 156 (165)
Q Consensus 134 G~rLaCqa~~~s---Di~Ielp~~~~ 156 (165)
.+||.||....- .|+|.+|...+
T Consensus 122 tSRLGCQI~l~keldG~~v~vP~atr 147 (159)
T KOG3309|consen 122 TSRLGCQIVLTKELDGMRVAVPEATR 147 (159)
T ss_pred ccccceEEEeccccCCcEEECccccc
Confidence 899999998764 48999997655
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.14 E-value=1.3e-10 Score=95.97 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=61.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSK 133 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~ 133 (165)
|.+++|+| +| +.|++++|+|||+||+++||.||+.|. .|.|+.|+|+| +|. .
T Consensus 1 m~~v~i~i----dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~ 58 (234)
T PRK07569 1 MSVKTLTI----DD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------N 58 (234)
T ss_pred CceEEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------C
Confidence 34456666 57 779999999999999999999999998 89999999998 342 2
Q ss_pred CeEEeeeeEeCCCeEEEeCCc
Q 031115 134 GYALLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 134 G~rLaCqa~~~sDi~Ielp~~ 154 (165)
+.+.||++.+..+|+|.+...
T Consensus 59 ~~~~aC~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 59 KLLPACVTPVAEGMVVQTNTP 79 (234)
T ss_pred ccccCcCCCCCCCCEEEECCH
Confidence 456799999999999998865
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.03 E-value=3e-10 Score=80.12 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=47.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCc----------eeccCceEEEecCccCCcccCCCChhhhcC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRH----------GCCTSCAVRIKSGQIKQPEALGISAELKSK 133 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~----------G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~ 133 (165)
.|+|.. +| +.+++++|+|||+|+.++||.||+.|.. |.|+.|.|.|. | .
T Consensus 3 ~v~i~i--dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~ 61 (82)
T PF13510_consen 3 MVTITI--DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E 61 (82)
T ss_dssp EEEEEE--TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred EEEEEE--CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence 355554 68 8899999999999999999999999987 99999999984 2 1
Q ss_pred CeEEeeeeEeCCCeEEEeC
Q 031115 134 GYALLCVGYPSSDVEVETQ 152 (165)
Q Consensus 134 G~rLaCqa~~~sDi~Ielp 152 (165)
..+.||++.+..+|+|+..
T Consensus 62 ~~v~AC~t~v~~GM~V~T~ 80 (82)
T PF13510_consen 62 PNVRACSTPVEDGMVVETQ 80 (82)
T ss_dssp EEEETTT-B--TTEEEE--
T ss_pred cceEcccCCCcCCcEEEEe
Confidence 2368999999999999864
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.92 E-value=2.5e-09 Score=102.27 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~r 136 (165)
.+|+| +| +.+++++|+|||+|++++||.||+.|. .|.|+.|+|+|.+|.. +...+++
T Consensus 2 ~~i~i----dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~ 64 (847)
T PRK08166 2 ATIHV----DG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLV 64 (847)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcc
Confidence 45666 57 789999999999999999999999998 6999999999998843 1224688
Q ss_pred EeeeeEeCCCeEEEeCCc
Q 031115 137 LLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~~ 154 (165)
++|++.+..+|+|++...
T Consensus 65 ~aC~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 65 MSCMTPATDGTFISIDDP 82 (847)
T ss_pred cCcCCCCCCCCEEEeCCH
Confidence 999998889999998764
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.71 E-value=4.6e-08 Score=83.82 Aligned_cols=73 Identities=21% Similarity=0.465 Sum_probs=60.4
Q ss_pred CCceEEEEEeCCCCcEEEEEe-CCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhc
Q 031115 60 IPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKS 132 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v-~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~ 132 (165)
.|.++|+| || +.+++ ++|+|||+||+++||.||+-|. .|.|..|.|.| +|.
T Consensus 66 ~~~~~I~I----DG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~--------------- 123 (297)
T PTZ00305 66 KPRAIMFV----NK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT--------------- 123 (297)
T ss_pred CCceEEEE----CC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------
Confidence 44566777 57 89999 9999999999999999999998 58899999998 332
Q ss_pred CCeEEeeeeEeCCCeEEEeCCc
Q 031115 133 KGYALLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 133 ~G~rLaCqa~~~sDi~Ielp~~ 154 (165)
.+..-||.+.+..+|+|.+..+
T Consensus 124 ~~lv~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 124 QNLVVSCATVALPGMSIITDSR 145 (297)
T ss_pred cCcccccCCcCCCCCEEEeCCH
Confidence 2356699999999999998754
No 26
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.56 E-value=9.6e-08 Score=86.02 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=51.4
Q ss_pred EEEEeCCCChHHHHHHH------CCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCCCeEE
Q 031115 76 HEFLVPEDQYILHTAES------QNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEV 149 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~------~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sDi~I 149 (165)
.++++++|+|||+++.+ .++.++++|+.|.||+|.+++ +|. .+|+|++.+.++++|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i 84 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII 84 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence 45667799999999995 677789999999999999996 663 478999999999999
Q ss_pred EeCC
Q 031115 150 ETQD 153 (165)
Q Consensus 150 elp~ 153 (165)
+...
T Consensus 85 ~~~~ 88 (486)
T PRK06259 85 EPLD 88 (486)
T ss_pred EecC
Confidence 9775
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.46 E-value=3.8e-07 Score=85.19 Aligned_cols=72 Identities=29% Similarity=0.505 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCC
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKG 134 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G 134 (165)
.+++|+| +| +.+++++|+|||+++.++|+.||..|. .|.|+.|.|+| +|. .+
T Consensus 2 ~~v~~~i----dg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~ 59 (652)
T PRK12814 2 NTISLTI----NG--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NR 59 (652)
T ss_pred CeEEEEE----CC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cc
Confidence 3456666 57 899999999999999999999999997 69999999988 332 13
Q ss_pred eEEeeeeEeCCCeEEEeCCc
Q 031115 135 YALLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 135 ~rLaCqa~~~sDi~Ielp~~ 154 (165)
..+||++.+..+|+|.+...
T Consensus 60 ~~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 60 FVPACSTAVSEGMVIETENA 79 (652)
T ss_pred eecCcCCCCCCCCEEEeCcH
Confidence 57899999999999998655
No 28
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.41 E-value=6.6e-07 Score=84.44 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~r 136 (165)
.+|+| || +++++++|+|||+|++++||+||+-|- .|.|..|.|.+..+. ..+
T Consensus 2 ~tI~I----DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~ 59 (693)
T COG1034 2 VTITI----DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLV 59 (693)
T ss_pred eEEEE----CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------ccc
Confidence 46666 68 899999999999999999999999997 688999999885432 245
Q ss_pred EeeeeEeCCCeEEEeCCc
Q 031115 137 LLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~~ 154 (165)
-+|.+.+..+++|.+..+
T Consensus 60 ~SC~tpv~dGM~I~T~s~ 77 (693)
T COG1034 60 ASCATPVTDGMVISTNSE 77 (693)
T ss_pred cccccccCCCeEEecCCH
Confidence 689997788899876654
No 29
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.35 E-value=1e-06 Score=83.02 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~r 136 (165)
++|+| +| +++++++|+|||+|++++||.||+-|. .|.|..|.|.|..+. ...+
T Consensus 2 ~~~~I----dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~ 60 (687)
T PRK09130 2 VKLKV----DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPV 60 (687)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcc
Confidence 56777 57 899999999999999999999999997 899999999985321 1235
Q ss_pred EeeeeEeCCCeEEEeCCc
Q 031115 137 LLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~~ 154 (165)
-+|.+.+...|+|.+..+
T Consensus 61 ~sC~~~v~~gm~v~T~s~ 78 (687)
T PRK09130 61 ASCAMPVGEGMVIFTNTP 78 (687)
T ss_pred cccCCCCCCCCEEEeCCH
Confidence 589998888999998653
No 30
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.27 E-value=2.1e-06 Score=79.48 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=56.2
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCC
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 145 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s 145 (165)
+| +++++++|+|||+|++++||.||+-|. .|.|..|.|.|. |.. ...+.||.+.+..
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~~--------------~~~~~aC~~~~~~ 66 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KFP--------------DKPVASCATPVTD 66 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CCC--------------CCcccccCCCCCC
Confidence 57 899999999999999999999999997 899999999984 311 0146799999999
Q ss_pred CeEEEeCCc
Q 031115 146 DVEVETQDE 154 (165)
Q Consensus 146 Di~Ielp~~ 154 (165)
+|+|.+..+
T Consensus 67 gm~v~t~~~ 75 (603)
T TIGR01973 67 GMKISTNSE 75 (603)
T ss_pred CCEEEeCCH
Confidence 999998653
No 31
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.26 E-value=2.8e-06 Score=81.26 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCe
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGY 135 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~ 135 (165)
+++|+| || +++++++|+|||+|+.++||.||+-|. .|.|..|.|.|. |. ...
T Consensus 4 ~v~~~i----dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~-g~---------------~~~ 61 (797)
T PRK07860 4 LVTLTI----DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE-GQ---------------RKP 61 (797)
T ss_pred eEEEEE----CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC-CC---------------ccc
Confidence 456666 58 899999999999999999999999997 799999999983 32 123
Q ss_pred EEeeeeEeCCCeEEEeCC-chHHH
Q 031115 136 ALLCVGYPSSDVEVETQD-EDEVK 158 (165)
Q Consensus 136 rLaCqa~~~sDi~Ielp~-~~~~~ 158 (165)
+-+|.+.+..+|+|+... .+++.
T Consensus 62 ~~aC~t~v~~gm~V~t~~~s~~v~ 85 (797)
T PRK07860 62 QASCTTTVTDGMVVKTQLTSPVAD 85 (797)
T ss_pred ccccCCCCCCCcEEEeCCCCHHHH
Confidence 569999999999999862 34443
No 32
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.25 E-value=1.2e-06 Score=65.34 Aligned_cols=52 Identities=29% Similarity=0.558 Sum_probs=38.7
Q ss_pred EEEEeCCCChHHHHHHHC------CCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCC
Q 031115 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 145 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~------GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s 145 (165)
.++++.++.|+|+++..- -+...++|+.|.||+|.++| .|. .+|||.+....
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~ 78 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD 78 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence 568888999999999743 46688999999999999998 343 37888887643
No 33
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.21 E-value=2.9e-06 Score=81.53 Aligned_cols=68 Identities=25% Similarity=0.466 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~r 136 (165)
++|+| +| +++++++|+|||+||.++||.||+-|. .|.|+.|.|.| +|. .+
T Consensus 2 v~i~I----dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~ 57 (819)
T PRK08493 2 ITITI----NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RV 57 (819)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Ee
Confidence 45666 68 889999999999999999999998774 68999999998 332 16
Q ss_pred EeeeeEeCCCeEEEeCCc
Q 031115 137 LLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~~ 154 (165)
+||.+.+..+|+|+....
T Consensus 58 ~AC~t~v~dGM~V~T~s~ 75 (819)
T PRK08493 58 YSCNTKAKEGMNILTNTP 75 (819)
T ss_pred ccccCCCCCCCEEEecCH
Confidence 799999998999998643
No 34
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.16 E-value=2.6e-06 Score=70.97 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=33.9
Q ss_pred EEEEEeCCCChHHHHHHHCC------CCCCCCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+.++++.++.|+||++..-. +...++|+.|.||+|.++| .|.
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~ 72 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR 72 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe
Confidence 35667779999999998543 5578999999999999998 443
No 35
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.14 E-value=4.7e-06 Score=79.12 Aligned_cols=70 Identities=21% Similarity=0.420 Sum_probs=58.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~r 136 (165)
++|+| || +++++++|+|||+|++++||.||+-|. .|.|..|.|+|. |. .+.+
T Consensus 2 ~~~~i----dg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~-~~---------------~~~~ 59 (776)
T PRK09129 2 VEIEI----DG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE-KA---------------PKPL 59 (776)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC-CC---------------CCcC
Confidence 45666 68 899999999999999999999999999 589999999983 31 1236
Q ss_pred EeeeeEeCCCeEEEeCCc
Q 031115 137 LLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 137 LaCqa~~~sDi~Ielp~~ 154 (165)
.||.+.+..+|+|.+...
T Consensus 60 ~aC~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 60 PACATPVTDGMKVFTRSE 77 (776)
T ss_pred cccCCCCCCCCEEEcCCH
Confidence 799999999999998654
No 36
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.11 E-value=2e-06 Score=72.10 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=33.7
Q ss_pred EEEEEeCCCChHHHHHHHC-------------CCCCCCCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPEDQYILHTAESQ-------------NITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~-------------GI~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+.++++.++.||||++..- -+...++|+.|.||+|.++| .|.
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~ 78 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK 78 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc
Confidence 3566667999999999843 16678999999999999998 444
No 37
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.00 E-value=1e-05 Score=70.22 Aligned_cols=42 Identities=29% Similarity=0.459 Sum_probs=36.5
Q ss_pred EEEEEeCCCChHHHHHHHCCCCCC------CCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPEDQYILHTAESQNITLP------FACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ip------~~C~~G~CGtC~V~v~~G~ 117 (165)
++++++++|.||||++...++.++ .+|+.|.||+|.|+| .|.
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~ 67 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR 67 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence 367889999999999999999885 569999999999998 454
No 38
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.94 E-value=2.7e-05 Score=64.36 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=42.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecCc
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
..+|+|.. +|+.++++++++++||++++++ |+ ...+.|+.|.||.|.| +++|.
T Consensus 49 ~~~i~~~V--NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~ 103 (217)
T PRK11433 49 ISPVTLKV--NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR 103 (217)
T ss_pred CceEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence 44566654 6877889999999999999985 43 4789999999999999 45674
No 39
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.94 E-value=9.2e-06 Score=68.37 Aligned_cols=42 Identities=24% Similarity=0.515 Sum_probs=35.8
Q ss_pred EEEEEeCCCChHHHHHHHCCC------CCCCCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPEDQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.+++++.++.|||+++..-+. ...++|+.|.||+|.+.| .|.
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~ 68 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGR 68 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-Ccc
Confidence 367888899999999999764 678999999999999998 443
No 40
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.87 E-value=1.1e-05 Score=67.80 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=33.1
Q ss_pred EEEE-eCCCChHHHHHHHC----------CCCCCCCCCceeccCceEEEecCcc
Q 031115 76 HEFL-VPEDQYILHTAESQ----------NITLPFACRHGCCTSCAVRIKSGQI 118 (165)
Q Consensus 76 ~~~~-v~~getLLeaa~~~----------GI~ip~~C~~G~CGtC~V~v~~G~v 118 (165)
.+|+ +.++.|+|+++..- .+...++|+.|.||+|.++| .|..
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p 74 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRP 74 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCcc
Confidence 3444 45899999999742 37788999999999999998 4554
No 41
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.81 E-value=6.5e-05 Score=59.44 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=43.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCC-CCCCCCCceeccCceEEEecCc
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.|+|.- +|+.++++++++++||+.+++.|+ ....+|+.|.||.|.|.| +|.
T Consensus 8 ~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 8 TIECTI--NGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 455543 688889999999999999999986 699999999999999998 554
No 42
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.79 E-value=1.8e-05 Score=67.50 Aligned_cols=41 Identities=29% Similarity=0.647 Sum_probs=31.4
Q ss_pred EEEEeC--C-CChHHHHHHHCC------CCCCCCCCceeccCceEEEecCc
Q 031115 76 HEFLVP--E-DQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 76 ~~~~v~--~-getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.+|+++ + |.|+||++..-. +...++|+.|.||+|.++| .|.
T Consensus 62 ~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~ 111 (276)
T PLN00129 62 QSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK 111 (276)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc
Confidence 455555 3 789999998632 4578999999999999998 443
No 43
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.73 E-value=5e-05 Score=64.67 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEEEEeCCCChHHHHHHHCCCCC------CCCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPEDQYILHTAESQNITL------PFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~i------p~~C~~G~CGtC~V~v~~G~ 117 (165)
.+.+++++|.|||+++...+..+ .++|+.|.||+|.|.| .|.
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE 73 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence 36788999999999999987654 4889999999999999 554
No 44
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.73 E-value=2.3e-05 Score=65.28 Aligned_cols=58 Identities=21% Similarity=0.485 Sum_probs=40.6
Q ss_pred EEEEeC--C-CChHHHHHHHCC-----CCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeC---
Q 031115 76 HEFLVP--E-DQYILHTAESQN-----ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPS--- 144 (165)
Q Consensus 76 ~~~~v~--~-getLLeaa~~~G-----I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~--- 144 (165)
.+|+++ + +.|+|+++..-. +...++|+.|.||+|.++| .|. -+|||++++.
T Consensus 23 ~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~ 84 (235)
T PRK12575 23 QRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALP 84 (235)
T ss_pred EEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcC
Confidence 345554 4 458999987532 4577999999999999998 343 4777777765
Q ss_pred CCeEEEe
Q 031115 145 SDVEVET 151 (165)
Q Consensus 145 sDi~Iel 151 (165)
++++|+.
T Consensus 85 ~~i~ieP 91 (235)
T PRK12575 85 REIVLRP 91 (235)
T ss_pred CCEEEeE
Confidence 4466653
No 45
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.68 E-value=2.7e-05 Score=65.09 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=32.9
Q ss_pred EEEEeCCCChHHHHHHHC------CCCCCCCCCceeccCceEEEecCc
Q 031115 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~------GI~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
..++++++.|||+++... .+...++|+.|.||+|.|+|- |.
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~In-G~ 73 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVN-NV 73 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceEC-cc
Confidence 566777999999999553 344568999999999999985 53
No 46
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.66 E-value=4.9e-05 Score=62.75 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=35.4
Q ss_pred EEEEeC-CCChHHHHHHHCC-CCC-----CCCCCceeccCceEEEecCcc
Q 031115 76 HEFLVP-EDQYILHTAESQN-ITL-----PFACRHGCCTSCAVRIKSGQI 118 (165)
Q Consensus 76 ~~~~v~-~getLLeaa~~~G-I~i-----p~~C~~G~CGtC~V~v~~G~v 118 (165)
++++++ +|.|||+++...+ ..+ .++|+.|.||+|.|.| +|..
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~ 68 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN 68 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence 678888 9999999999998 333 5899999999999999 5643
No 47
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.66 E-value=3.2e-05 Score=64.58 Aligned_cols=41 Identities=29% Similarity=0.538 Sum_probs=32.6
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceeccCceEEEecCc
Q 031115 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.+++..+|.|+||++..-. +.+.++||.|+||+|.+.| .|.
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~ 68 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGK 68 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCc
Confidence 3455559999999997533 5588999999999999998 454
No 48
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.52 E-value=0.00024 Score=67.83 Aligned_cols=68 Identities=29% Similarity=0.531 Sum_probs=51.8
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEecCccCCcccCCCChhhhcCCe
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGY 135 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~ 135 (165)
+++|+| +| +++++++|+|||+++.++||.||+-|. -|.|-+|.|.+ +|..
T Consensus 5 ~i~vti----dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~l----------------- 60 (978)
T COG3383 5 MITVTI----DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGKL----------------- 60 (978)
T ss_pred eEEEEE----CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCce-----------------
Confidence 355666 57 889999999999999999999999998 46788888884 5542
Q ss_pred EEeeeeEeCCCeEEEeCC
Q 031115 136 ALLCVGYPSSDVEVETQD 153 (165)
Q Consensus 136 rLaCqa~~~sDi~Ielp~ 153 (165)
.-+|.+.+...++|....
T Consensus 61 ~rsCsT~v~dGm~v~t~s 78 (978)
T COG3383 61 VRSCSTPVEDGMVVRTNS 78 (978)
T ss_pred eccccccccCCcEEeccc
Confidence 236666666667666544
No 49
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.43 E-value=0.0004 Score=54.39 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.2
Q ss_pred CCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+|+.++++++++++||+++++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 5877889999999999999984 75 589999999999999998 453
No 50
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.38 E-value=0.00016 Score=59.20 Aligned_cols=41 Identities=27% Similarity=0.570 Sum_probs=34.3
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceeccCceEEEecCc
Q 031115 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.++++++|+|||+++.+.+ +....+|+.|.||+|.|+| +|.
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK 63 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence 5678889999999999855 4456899999999999987 564
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.01 E-value=0.0021 Score=50.49 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+|+.+++.+.++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 9 NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 9 NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 5877888999999999999984 75 478899999999999998 453
No 52
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.93 E-value=0.0032 Score=49.67 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~-~GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+|+.+++++.++++||+++++ .|+ ...++|+.|.||.|.|.+ +|+
T Consensus 9 NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~ 55 (156)
T COG2080 9 NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGE 55 (156)
T ss_pred CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCe
Confidence 588899999999999999995 454 478999999999999987 554
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.01 E-value=0.011 Score=53.77 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEE
Q 031115 72 RGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (165)
Q Consensus 72 ~G~~~~~-~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v 113 (165)
+|+.+++ +++++++||+.++++ |+ ....+|+.|.||.|-|.|
T Consensus 6 Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 6 NGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred CCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 5877788 699999999999974 75 589999999999999999
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.87 E-value=0.02 Score=56.46 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCC-CCCC-CCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNIT-LPFA-CRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~-ip~~-C~~G~CGtC~V~v~~G~ 117 (165)
+|+.++++++++++||+.+++.|+. .... |+.|.||.|.|.| +|.
T Consensus 8 Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 8 NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence 5888899999999999999998764 5565 7899999999998 554
No 55
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=95.39 E-value=0.03 Score=54.50 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~-~GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+| ..++++++++||+.+++ .|+ .....|+.|.||.|.|.| +|+
T Consensus 6 ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~ 50 (848)
T TIGR03311 6 NG--REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK 50 (848)
T ss_pred CC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence 47 57899999999999997 486 689999999999999998 554
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.16 E-value=0.033 Score=54.89 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCC-CCC-CCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNIT-LPF-ACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~-ip~-~C~~G~CGtC~V~v~~G~ 117 (165)
+|+.++++++++++||+.+++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV 50 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence 4777889999999999999998864 666 68899999999998 554
No 57
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=94.71 E-value=0.044 Score=50.88 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=37.9
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceeccCceEEEec
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKS 115 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~------~G~CGtC~V~v~~ 115 (165)
+| +.+.|++|.|+|+|+...|++||.-|. .|.|..|.|.|..
T Consensus 38 d~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 38 DD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred CC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 46 789999999999999999999999997 6889999888864
No 58
>PLN00192 aldehyde oxidase
Probab=94.25 E-value=0.11 Score=53.11 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=39.7
Q ss_pred EEEEeCCCCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 65 Vti~~~~~G~~~~~-~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
|+|.- +|+.+++ .++++++||+.+++. |+ .....|+.|.||.|-|.|-
T Consensus 6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~ 56 (1344)
T PLN00192 6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLS 56 (1344)
T ss_pred EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEe
Confidence 44543 5877777 589999999999975 75 5889999999999999993
No 59
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.75 E-value=0.11 Score=52.83 Aligned_cols=43 Identities=23% Similarity=0.440 Sum_probs=36.3
Q ss_pred CCcEE-EEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 72 RGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 72 ~G~~~-~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
+|+.. ...++++++||+.+++. |+ ....+|+.|.||.|-|.|-
T Consensus 8 Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 8 NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 57554 45789999999999974 75 5899999999999999985
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.13 E-value=0.6 Score=46.13 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=54.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC-----------CCCCceeccCceEEEecCccCCcccCCCChhhh
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP-----------FACRHGCCTSCAVRIKSGQIKQPEALGISAELK 131 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip-----------~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~ 131 (165)
..|+|.+ +| +.+++.+|+||..|+..+|+.+- --|..|.|-.|.|.|-.|...
T Consensus 11 ~~~~~~~--dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~------------ 74 (985)
T TIGR01372 11 RPLRFTF--DG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR------------ 74 (985)
T ss_pred CeEEEEE--CC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC------------
Confidence 3566665 68 89999999999999999997642 136667788999999544110
Q ss_pred cCCeEEeeeeEeCCCeEEEeCC
Q 031115 132 SKGYALLCVGYPSSDVEVETQD 153 (165)
Q Consensus 132 ~~G~rLaCqa~~~sDi~Ielp~ 153 (165)
...+.||++.+..+|+|+...
T Consensus 75 -~~~~~ac~~~~~~gm~~~~~~ 95 (985)
T TIGR01372 75 -EPNTRATTQELYDGLVATSQN 95 (985)
T ss_pred -CCCccceeEEcccCCEEeccc
Confidence 112558888888888887643
No 61
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=89.52 E-value=0.34 Score=40.66 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.9
Q ss_pred CCChHHHHHHHCCC------CCCCCCCceeccCceEEEe
Q 031115 82 EDQYILHTAESQNI------TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 82 ~getLLeaa~~~GI------~ip~~C~~G~CGtC~V~v~ 114 (165)
-|--+|||+.+-.= ....+||.|+||+|.+.+-
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~ 113 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN 113 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhhccccccceeccC
Confidence 45689999986442 2568999999999999874
No 62
>PLN02906 xanthine dehydrogenase
Probab=79.83 E-value=2.1 Score=43.87 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=28.4
Q ss_pred CChHHHHHHHCCC-CCCCCCCceeccCceEEEe
Q 031115 83 DQYILHTAESQNI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 83 getLLeaa~~~GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
+++||+.+++.|+ .....|+.|.||.|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999999775 5889999999999999996
No 63
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=76.18 E-value=1.9 Score=35.26 Aligned_cols=31 Identities=13% Similarity=0.514 Sum_probs=23.3
Q ss_pred hHHHHHHHCCCCC------CCCCCceeccCceEEEec
Q 031115 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 85 tLLeaa~~~GI~i------p~~C~~G~CGtC~V~v~~ 115 (165)
.+.+++.++|++. ...|+.|.||+|.+.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 3556667788652 468999999999999654
No 64
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=75.60 E-value=2.5 Score=34.61 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCC------CCCCCceeccCceEEEecC
Q 031115 86 ILHTAESQNITL------PFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 86 LLeaa~~~GI~i------p~~C~~G~CGtC~V~v~~G 116 (165)
+.+.+.+.|++. .-.|+.|.|+.|.++. .|
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~ 230 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GG 230 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CC
Confidence 456667788863 5789999999999996 44
No 65
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=73.37 E-value=2 Score=36.25 Aligned_cols=33 Identities=15% Similarity=0.455 Sum_probs=26.0
Q ss_pred ChHHHHHHHCCCC---------CCCCCCceeccCceEEEecC
Q 031115 84 QYILHTAESQNIT---------LPFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 84 etLLeaa~~~GI~---------ip~~C~~G~CGtC~V~v~~G 116 (165)
+.+.+.+.+.|++ -...|+.|.||.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence 3577778888875 24689999999999997655
No 66
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=73.06 E-value=9.1 Score=34.81 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCcEEE-EEeCCCChHHHHHH-HCCC-CCCCCCCceeccCceEEE
Q 031115 63 HKVTVHDRFRGVVHE-FLVPEDQYILHTAE-SQNI-TLPFACRHGCCTSCAVRI 113 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~-~~v~~getLLeaa~-~~GI-~ip~~C~~G~CGtC~V~v 113 (165)
..|.|.- +|..+. -.+++..||||.++ +.+. .-.-.|..|-||.|.|.|
T Consensus 7 ~~irf~l--N~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 7 NTIRFLL--NGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred ceeEEEe--cCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 4455543 354333 35789999999999 5665 366789999999999976
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=71.00 E-value=3 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=23.3
Q ss_pred hHHHHHHHCCCC------CCCCCCceeccCceEEEe
Q 031115 85 YILHTAESQNIT------LPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 85 tLLeaa~~~GI~------ip~~C~~G~CGtC~V~v~ 114 (165)
.+.+++++.|++ --..|+.|.||.|.|...
T Consensus 181 ~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 181 KVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 566677788873 236899999999999974
No 68
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=70.91 E-value=2.3 Score=26.03 Aligned_cols=18 Identities=44% Similarity=1.071 Sum_probs=14.1
Q ss_pred CCCCceeccCceEEEecC
Q 031115 99 FACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 99 ~~C~~G~CGtC~V~v~~G 116 (165)
-.|+-|.|+.|.+....+
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 469999999999998765
No 69
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=70.50 E-value=4.7 Score=32.97 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=24.5
Q ss_pred hHHHHHHHCCCCC------CCCCCceeccCceEEEec
Q 031115 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 85 tLLeaa~~~GI~i------p~~C~~G~CGtC~V~v~~ 115 (165)
.+.+.+++.|++. ...|+.|.||.|.....+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 4566677888863 578999999999999874
No 70
>PRK01777 hypothetical protein; Validated
Probab=68.08 E-value=18 Score=26.15 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHCCCCCC
Q 031115 75 VHEFLVPEDQYILHTAESQNITLP 98 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ip 98 (165)
...+++++|.|+-+++...||...
T Consensus 18 ~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 18 LQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEEcCCCCcHHHHHHHcCCCcc
Confidence 357889999999999999998544
No 71
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=66.45 E-value=12 Score=24.24 Aligned_cols=27 Identities=7% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
+|+| +| +.+++++|.||.+++...|++
T Consensus 2 ~i~v----NG--~~~~~~~~~tl~~lL~~l~~~ 28 (66)
T PRK05659 2 NIQL----NG--EPRELPDGESVAALLAREGLA 28 (66)
T ss_pred EEEE----CC--eEEEcCCCCCHHHHHHhcCCC
Confidence 4555 47 678999999999999999875
No 72
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=65.07 E-value=4.3 Score=33.37 Aligned_cols=28 Identities=14% Similarity=0.532 Sum_probs=22.4
Q ss_pred hHHHHHHHCCCC---C------CCCCCceeccCceEE
Q 031115 85 YILHTAESQNIT---L------PFACRHGCCTSCAVR 112 (165)
Q Consensus 85 tLLeaa~~~GI~---i------p~~C~~G~CGtC~V~ 112 (165)
.+.+++++.|++ | .-.|+.|.||+|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 567788888886 2 356889999999997
No 73
>PRK05802 hypothetical protein; Provisional
Probab=62.52 E-value=5.5 Score=34.41 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=21.9
Q ss_pred HHHHHHH--CCCCC------CCCCCceeccCceEEEe
Q 031115 86 ILHTAES--QNITL------PFACRHGCCTSCAVRIK 114 (165)
Q Consensus 86 LLeaa~~--~GI~i------p~~C~~G~CGtC~V~v~ 114 (165)
+.+.+.+ .||.+ .-.||.|.||.|.+...
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~~ 305 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRYG 305 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEEC
Confidence 4455555 67765 67899999999999963
No 74
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=62.38 E-value=6.5 Score=32.97 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCC------CCCCCceeccCceEEE
Q 031115 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (165)
Q Consensus 86 LLeaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (165)
+.+.+.+.|+++ .-.|+.|.|+.|.+..
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 456667788753 4689999999999985
No 75
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.58 E-value=10 Score=36.22 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCC------CCCCCceeccCceEEE
Q 031115 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (165)
Q Consensus 86 LLeaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (165)
+.+.+.+.|++. .-.||.|.||.|.+..
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 456777888876 7899999999999964
No 76
>PRK07440 hypothetical protein; Provisional
Probab=55.29 E-value=36 Score=22.83 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~i 97 (165)
+.+|++ +| +.++++++.||.+.+...++..
T Consensus 4 ~m~i~v----NG--~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV----NG--ETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE----CC--EEEEcCCCCCHHHHHHHcCCCC
Confidence 356666 47 6789999999999999988753
No 77
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=54.31 E-value=29 Score=23.12 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~i 97 (165)
|.+.+|++.. .+..+.++++++.|+.+.+.+.|++.
T Consensus 2 ~~mm~v~vng--~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIG--RGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEEec--cccceEEEcCCCCcHHHHHHHcCCCC
Confidence 4567777753 12245788899999999999998753
No 78
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=53.72 E-value=24 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecc-CceEEEecC
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCT-SCAVRIKSG 116 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CG-tC~V~v~~G 116 (165)
+|+...+.+.+|+||.|++..+ |. .|..- .|.+++..+
T Consensus 8 ng~~t~V~vrpg~ti~d~L~~~-------c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 8 NGQRTVVPVRPGMSVRDVLAKA-------CKKRGLNPECCDVFLLGL 47 (72)
T ss_pred CCCeEEEEECCCCCHHHHHHHH-------HHHcCCCHHHEEEEEecC
Confidence 6777899999999999987653 44 33333 355666543
No 79
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=51.25 E-value=6.2 Score=32.71 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCC---------CCCCCceeccCceEE
Q 031115 86 ILHTAESQNITL---------PFACRHGCCTSCAVR 112 (165)
Q Consensus 86 LLeaa~~~GI~i---------p~~C~~G~CGtC~V~ 112 (165)
+.+.+.+.|++- .-.|+.|.||.|+|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 455667788752 257999999999886
No 80
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=48.66 E-value=23 Score=25.15 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEEEeCCCChHHHHHHHCCCC
Q 031115 75 VHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ 96 (165)
...+++++|.|+.+|++..|+.
T Consensus 15 ~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 15 ILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEECCCcCcHHHHHHHcCch
Confidence 3578999999999999999984
No 81
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=47.92 E-value=10 Score=30.61 Aligned_cols=17 Identities=35% Similarity=1.042 Sum_probs=14.7
Q ss_pred CCCCCceeccCceEEEe
Q 031115 98 PFACRHGCCTSCAVRIK 114 (165)
Q Consensus 98 p~~C~~G~CGtC~V~v~ 114 (165)
.-.|+.|.||.|.+...
T Consensus 213 ~m~Cg~G~C~~C~~~~~ 229 (243)
T cd06192 213 PMCCGIGICGACTIETK 229 (243)
T ss_pred cccCccccccceEEEeC
Confidence 47899999999999853
No 82
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=47.62 E-value=59 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=22.5
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC
Q 031115 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP 98 (165)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip 98 (165)
|+|.. +|+.+.+.. ...|+-+++.++||.+.
T Consensus 2 Vtv~~--dG~~~~v~T-~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 2 VTVTV--DGKEKTVYT-TASTVGDALKELGITLG 32 (43)
T ss_pred EEEEE--CCEEEEEEe-CCCCHHHHHHhCCCCCC
Confidence 45553 686665554 45699999999999873
No 83
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=46.50 E-value=52 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~i 97 (165)
+|++ +| ..++.+++.||.+.+...|++.
T Consensus 2 ~i~v----NG--~~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV----NE--EQVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE----CC--EEEEcCCCCcHHHHHHHcCCCC
Confidence 4666 47 6778889999999999998753
No 84
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=46.46 E-value=7.8 Score=32.15 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=21.6
Q ss_pred hHHHHHHHCCCC---------CCCCCCceeccCceEE
Q 031115 85 YILHTAESQNIT---------LPFACRHGCCTSCAVR 112 (165)
Q Consensus 85 tLLeaa~~~GI~---------ip~~C~~G~CGtC~V~ 112 (165)
.+.+.+++.|++ -.-.|+.|.||+|++.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 356677788875 2367999999999976
No 85
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=45.90 E-value=53 Score=23.04 Aligned_cols=31 Identities=3% Similarity=0.097 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
|.+.+|+| +| +..+++++.||.+.+...+++
T Consensus 16 ~~~m~I~V----NG--~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI----ND--QSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE----CC--eEEEcCCCCcHHHHHHHcCCC
Confidence 44567777 47 678889999999999988763
No 86
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=42.51 E-value=52 Score=21.07 Aligned_cols=27 Identities=4% Similarity=0.203 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
+|+| +| ..++++++.||.+.+...|+.
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQL----NQ--QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEE----CC--EEEECCCCCcHHHHHHhhCCC
Confidence 4566 46 678999999999999998874
No 87
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=41.49 E-value=45 Score=34.26 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=30.2
Q ss_pred eCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEec
Q 031115 80 VPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 80 v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~ 115 (165)
++++.||+..+++. |+ ...+.|+.|.||.|.|-|-.
T Consensus 17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK 54 (1257)
T ss_pred CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence 68999999998864 44 47899999999999998854
No 88
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=39.10 E-value=23 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=26.5
Q ss_pred cccccccccccCCCCCC-CCceEEEEE-eCCCCcEEEEEeCCCChHHHHHH
Q 031115 43 SSELQTTAGVNGSYSPS-IPTHKVTVH-DRFRGVVHEFLVPEDQYILHTAE 91 (165)
Q Consensus 43 ~~~~~~~~~~~~~~~p~-~~~~~Vti~-~~~~G~~~~~~v~~getLLeaa~ 91 (165)
-.+..+.+|.+.|..+. .......+. ...+| +.+.+++|+||||+++
T Consensus 218 ~g~~~~~vh~E~F~~~~~~~~~~~~~~~~~~s~--~~~~~~~g~t~lea~~ 266 (266)
T COG1018 218 LGVPDDRVHLEGFGPMLKDTAALLPFTTLARSG--KEVRVPPGQTLLEAAE 266 (266)
T ss_pred cCCChhcEEEeecCCCCccccccccchhhcccc--ceEecCCCchHHHhhC
Confidence 34555666665554221 111111221 22356 7899999999999974
No 89
>smart00455 RBD Raf-like Ras-binding domain.
Probab=39.06 E-value=47 Score=22.38 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=18.1
Q ss_pred CCcEEEEEeCCCChHHHHHHH
Q 031115 72 RGVVHEFLVPEDQYILHTAES 92 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~ 92 (165)
+|+...+.+.+|+||.|+++.
T Consensus 8 ~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 8 DNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCEEEEEECCCCCHHHHHHH
Confidence 677788999999999998764
No 90
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.72 E-value=27 Score=34.79 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCC------CCCCCceeccCceEEE
Q 031115 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (165)
Q Consensus 86 LLeaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (165)
+.+.+.+.|++. ...|+-|.||.|.+.+
T Consensus 862 v~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 456667788764 5789999999999986
No 91
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=33.37 E-value=37 Score=21.68 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.0
Q ss_pred EEEEeCCCChHHHHHHHCCCCCC
Q 031115 76 HEFLVPEDQYILHTAESQNITLP 98 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~ip 98 (165)
-.++++.|.||.|++..+|-..+
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~ 34 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTP 34 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBT
T ss_pred EEEEECCCCcHHHHHHHhCCCCC
Confidence 36889999999999999985443
No 92
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=30.95 E-value=95 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
+|+|.+ .|..+.+++++++|+.+.
T Consensus 2 ~i~vk~--~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVKW--GGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEEE--CCEEEEEEECCCCCHHHH
Confidence 567776 587889999999999764
No 93
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=30.93 E-value=1.3e+02 Score=19.58 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~i 97 (165)
+|+| +| +.++++++.||.+.+...++..
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILF----ND--QPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEE----CC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 4566 46 6788899999999999887753
No 94
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=28.94 E-value=22 Score=35.89 Aligned_cols=33 Identities=21% Similarity=0.711 Sum_probs=24.9
Q ss_pred CCCCCC-ceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCCC
Q 031115 97 LPFACR-HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSD 146 (165)
Q Consensus 97 ip~~C~-~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sD 146 (165)
-+-.|. .|.||.|++++ .|+ ..++++|.- +.-+
T Consensus 970 s~M~c~m~giC~qC~~~~-~G~---------------~k~vfaC~~-~~~~ 1003 (1028)
T PRK06567 970 SSMQCMMKGICGQCIQKV-KGE---------------QKYIFACSQ-QNQN 1003 (1028)
T ss_pred cHHHHHhhhhhhhheEEe-cCe---------------eEEEEEecC-CCCc
Confidence 467899 99999999998 442 357899987 4433
No 95
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=28.31 E-value=57 Score=17.65 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.8
Q ss_pred EEEeCCCChHHHHHHHCCCCC
Q 031115 77 EFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 77 ~~~v~~getLLeaa~~~GI~i 97 (165)
.+.+..|+|+-..+.+.|+.+
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 357888999999998887764
No 96
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=27.97 E-value=57 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=12.7
Q ss_pred EeCCCChHHHHHHHCCCCC
Q 031115 79 LVPEDQYILHTAESQNITL 97 (165)
Q Consensus 79 ~v~~getLLeaa~~~GI~i 97 (165)
.|.+|+|+-..|.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 5789999999999998754
No 97
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=27.63 E-value=1.3e+02 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
++.|+|... .|+...++++++.|+.+.
T Consensus 1 ~~~i~vkt~-~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 1 MIEVVCNDR-LGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred CEEEEEECC-CCCEEEEEeCCCCcHHHH
Confidence 357888874 587788899999998774
No 98
>PRK06437 hypothetical protein; Provisional
Probab=27.30 E-value=1.2e+02 Score=19.97 Aligned_cols=24 Identities=0% Similarity=0.039 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCChHHHHHHHCCCC
Q 031115 73 GVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 73 G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
+..++++++++.|+.+.+.+.|++
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHcCCC
Confidence 445789999999999999999975
No 99
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=27.04 E-value=1.5e+02 Score=19.93 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 031115 76 HEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~i 97 (165)
+.++++++.|+.|.+.+.|+..
T Consensus 10 ~~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 10 KEVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred EEEEcCCCCcHHHHHHHhCCCC
Confidence 7899999999999999999865
No 100
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=26.46 E-value=85 Score=21.76 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.2
Q ss_pred CCcEEEEEeCCCChHHHHHHH----CCCCCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAES----QNITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~----~GI~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
||+.-.+.+.+|+||-|++.+ .|+. ...|.|.+..|+
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~---------~~~~~vf~~g~~ 48 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGIN---------YAAVDLFLVGGD 48 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCC---------hhHEEEEEecCC
Confidence 687788999999998887654 4443 334777777554
No 101
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=25.61 E-value=1.1e+02 Score=19.62 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCc
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+| ...+++.|.|.+|+|..-+-.+ -..+..-.+.|+
T Consensus 7 dG--~~~~~~~g~T~~d~A~~I~~~l--------~~~~~~A~Vng~ 42 (60)
T PF02824_consen 7 DG--SIKELPEGSTVLDVAYSIHSSL--------AKRAVAAKVNGQ 42 (60)
T ss_dssp TS--CEEEEETTBBHHHHHHHHSHHH--------HHCEEEEEETTE
T ss_pred CC--CeeeCCCCCCHHHHHHHHCHHH--------HhheeEEEEcCE
Confidence 67 5677999999999999887333 334444445554
No 102
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=25.60 E-value=2e+02 Score=19.26 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC--ceeccCceEEEec
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR--HGCCTSCAVRIKS 115 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~--~G~CGtC~V~v~~ 115 (165)
+|+.-.+.+.+|+||-|++... |. .-....|.++...
T Consensus 9 ~~q~t~V~vrpg~ti~d~L~~~-------~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 9 NGQRTVVQVRPGMTIRDALSKA-------CKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTEEEEEEE-TTSBHHHHHHHH-------HHTTT--CCCEEEEEEE
T ss_pred CCCEEEEEEcCCCCHHHHHHHH-------HHHcCCCHHHEEEEEcC
Confidence 6877889999999999987653 22 2234466777654
No 103
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.06 E-value=64 Score=32.39 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=20.9
Q ss_pred HHHHHHHCCCC------CCCCCCceeccCceEEE
Q 031115 86 ILHTAESQNIT------LPFACRHGCCTSCAVRI 113 (165)
Q Consensus 86 LLeaa~~~GI~------ip~~C~~G~CGtC~V~v 113 (165)
+.+.+...||+ -...|+.|.||.|+|.+
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 34555667873 24789999999999975
No 104
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=23.89 E-value=76 Score=22.14 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=13.5
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 031115 76 HEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~i 97 (165)
+++.|+.|+||-....+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 5789999999999999999763
No 105
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=23.23 E-value=53 Score=18.54 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.3
Q ss_pred eCCCChHHHHHHHCCCCC
Q 031115 80 VPEDQYILHTAESQNITL 97 (165)
Q Consensus 80 v~~getLLeaa~~~GI~i 97 (165)
+.+|+||...+.+.|+.+
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 467899999999888754
No 106
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.53 E-value=1.5e+02 Score=20.59 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHCCCCCC
Q 031115 75 VHEFLVPEDQYILHTAESQNITLP 98 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ip 98 (165)
...+....+.||-+.+++.||+..
T Consensus 24 ~~~~~~~~~~tvkd~IEsLGVP~t 47 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIESLGVPHT 47 (81)
T ss_pred ceEEecCCCCcHHHHHHHcCCChH
Confidence 356788999999999999999864
No 107
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=1.2e+02 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCC
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPF 99 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~ 99 (165)
+| ..++++.|.||-||++..|...+.
T Consensus 7 nG--eev~lp~gsTlrdalea~ga~y~e 32 (512)
T COG4070 7 NG--EEVTLPAGSTLRDALEASGASYIE 32 (512)
T ss_pred CC--eEecCCCcchHHHHHHhcCCcccC
Confidence 47 789999999999999999976543
No 108
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=21.43 E-value=1.2e+02 Score=21.38 Aligned_cols=21 Identities=10% Similarity=-0.148 Sum_probs=17.8
Q ss_pred CCcEEEEEeCCCChHHHHHHH
Q 031115 72 RGVVHEFLVPEDQYILHTAES 92 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~ 92 (165)
+|....+.+.+|.|++|.++.
T Consensus 8 n~~~~~v~vrp~~tv~dvLe~ 28 (77)
T cd01818 8 DNQPVLTYLRPGMSVEDFLES 28 (77)
T ss_pred CCceEEEEECCCCCHHHHHHH
Confidence 566688999999999998864
No 109
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=20.47 E-value=71 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCChHHHHHHHCCCC--CCCCCCc---eeccCce
Q 031115 82 EDQYILHTAESQNIT--LPFACRH---GCCTSCA 110 (165)
Q Consensus 82 ~getLLeaa~~~GI~--ip~~C~~---G~CGtC~ 110 (165)
.-.-|++.+.+.|++ ..++|.. ..||+|.
T Consensus 125 ~K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 125 SKAEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred CHHHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 445788889999985 6789983 3688885
No 110
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=20.12 E-value=1e+02 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.3
Q ss_pred CCCceEEEEEeCCCCcEEEEEeCC
Q 031115 59 SIPTHKVTVHDRFRGVVHEFLVPE 82 (165)
Q Consensus 59 ~~~~~~Vti~~~~~G~~~~~~v~~ 82 (165)
||..|+||| +|+.+.+++++
T Consensus 1 mmk~~~itv----ng~~y~V~vee 20 (130)
T PRK06549 1 MLRKFKITI----DGKEYLVEMEE 20 (130)
T ss_pred CCceEEEEE----CCEEEEEEEEE
Confidence 466789998 48778888877
Done!