Query 031115
Match_columns 165
No_of_seqs 234 out of 1218
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iue_A Ferredoxin; electron tr 99.9 1.1E-24 3.7E-29 156.3 10.7 96 62-159 2-97 (98)
2 1czp_A Ferredoxin I; [2Fe-2S] 99.9 1.2E-24 4E-29 155.9 9.4 96 62-158 2-98 (98)
3 1frr_A Ferredoxin I; electron 99.9 1.2E-24 4E-29 154.4 9.0 94 63-158 2-95 (95)
4 1awd_A Ferredoxin; electron tr 99.9 2.6E-24 8.9E-29 153.0 10.2 94 63-158 1-94 (94)
5 1frd_A Heterocyst [2Fe-2S] fer 99.9 2.6E-24 8.8E-29 153.8 10.2 96 62-157 2-97 (98)
6 1a70_A Ferredoxin; iron-sulfur 99.9 2.1E-24 7.3E-29 154.5 9.4 95 62-158 2-96 (97)
7 1wri_A Ferredoxin II, ferredox 99.9 8.8E-24 3E-28 150.2 9.8 93 62-157 1-93 (93)
8 1jq4_A Methane monooxygenase c 99.9 1.3E-23 4.6E-28 150.2 5.8 92 62-154 4-97 (98)
9 3hui_A Ferredoxin; cytochrome 99.9 1.3E-22 4.3E-27 152.9 5.7 96 59-155 18-125 (126)
10 3lxf_A Ferredoxin; iron, iron- 99.9 1.2E-22 4E-27 147.7 5.3 90 64-154 2-103 (104)
11 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 4.3E-22 1.5E-26 145.9 6.2 92 63-155 2-104 (113)
12 2y5c_A Adrenodoxin-like protei 99.9 2.2E-22 7.5E-27 146.7 4.6 94 61-155 4-108 (109)
13 2bt6_A Adrenodoxin 1; rutheniu 99.9 3.5E-22 1.2E-26 145.3 5.0 91 61-152 5-108 (108)
14 1xlq_A Putidaredoxin, PDX; [2F 99.8 7.4E-22 2.5E-26 143.0 6.1 90 64-154 2-104 (106)
15 1uwm_A Ferredoxin VI, FDVI; el 99.8 9.2E-22 3.1E-26 142.5 5.3 90 64-154 2-104 (106)
16 2wlb_A ETP1-FD, electron trans 99.8 1.5E-21 5E-26 140.7 6.3 90 62-152 3-103 (103)
17 1b9r_A Protein (terpredoxin); 99.8 1.8E-22 6.2E-27 146.0 1.2 90 64-154 2-104 (105)
18 1krh_A Benzoate 1,2-dioxygenas 99.8 1.2E-20 4.2E-25 158.9 10.3 95 60-155 1-99 (338)
19 1doi_A 2Fe-2S ferredoxin; halo 99.8 4E-21 1.4E-25 144.9 6.2 87 63-153 28-117 (128)
20 2pia_A Phthalate dioxygenase r 99.8 2.2E-20 7.4E-25 157.2 9.2 101 45-151 215-321 (321)
21 1i7h_A Ferredoxin; 2Fe-2S,elec 99.8 1.5E-20 5E-25 137.4 6.9 92 63-155 2-104 (111)
22 3zyy_X Iron-sulfur cluster bin 99.8 1.7E-20 5.8E-25 172.5 7.8 96 60-159 1-97 (631)
23 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 4.8E-20 1.6E-24 130.9 5.9 84 64-151 2-93 (93)
24 3n9z_C Adrenodoxin; cytochrome 99.8 1.9E-20 6.6E-25 140.3 -2.0 97 60-157 3-112 (123)
25 3i9v_3 NADH-quinone oxidoreduc 98.9 2.8E-09 9.5E-14 99.7 7.2 86 63-154 2-98 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.8 2E-08 6.7E-13 78.3 8.0 67 64-150 11-81 (168)
27 3c8y_A Iron hydrogenase 1; dit 98.5 1.6E-07 5.5E-12 85.2 8.3 69 65-154 2-77 (574)
28 1kf6_B Fumarate reductase iron 98.4 1.7E-07 5.8E-12 75.8 4.7 59 75-151 25-92 (243)
29 1rm6_C 4-hydroxybenzoyl-COA re 98.4 9E-07 3.1E-11 68.6 7.4 62 64-145 4-67 (161)
30 2bs2_B Quinol-fumarate reducta 98.4 2.7E-07 9.3E-12 74.6 4.4 43 75-118 25-73 (241)
31 3hrd_D Nicotinate dehydrogenas 98.3 2.5E-06 8.5E-11 66.3 7.5 50 63-114 4-55 (160)
32 1n62_A Carbon monoxide dehydro 98.2 3.5E-06 1.2E-10 65.7 7.6 51 63-116 4-56 (166)
33 1ffv_A CUTS, iron-sulfur prote 98.2 3.5E-06 1.2E-10 65.6 7.6 51 63-116 4-56 (163)
34 2wdq_B Succinate dehydrogenase 98.2 1.4E-06 4.9E-11 70.1 4.4 41 76-117 23-70 (238)
35 2h88_B Succinate dehydrogenase 98.0 5.1E-06 1.8E-10 67.7 4.7 58 75-150 32-100 (252)
36 2w3s_A Xanthine dehydrogenase; 97.0 0.0011 3.8E-08 58.8 6.4 48 65-114 3-52 (462)
37 1vlb_A Aldehyde oxidoreductase 97.0 0.0015 5.2E-08 62.3 7.5 50 64-116 3-54 (907)
38 3vr8_B Iron-sulfur subunit of 96.9 0.00075 2.6E-08 56.5 4.7 42 75-117 56-104 (282)
39 3nvw_A Xanthine dehydrogenase/ 96.9 0.0011 3.7E-08 51.6 4.7 43 72-114 10-55 (164)
40 1dgj_A Aldehyde oxidoreductase 96.7 0.0019 6.5E-08 61.6 6.0 50 64-116 3-54 (907)
41 1y56_A Hypothetical protein PH 95.4 0.017 5.7E-07 50.5 5.3 45 64-113 15-66 (493)
42 3unc_A Xanthine dehydrogenase/ 93.6 0.082 2.8E-06 52.4 5.8 48 65-114 6-56 (1332)
43 2gag_A Heterotetrameric sarcos 93.0 0.2 6.8E-06 47.7 7.2 48 63-114 21-79 (965)
44 3zyv_A AOH1; oxidoreductase, m 90.0 0.41 1.4E-05 47.4 5.9 51 62-114 7-60 (1335)
45 1uh6_A Ubiquitin-like 5; beta- 56.5 18 0.0006 25.3 4.6 39 58-97 24-66 (100)
46 3u30_A Ubiquitin, linear DI-ub 49.9 72 0.0025 23.2 8.6 37 60-97 18-58 (172)
47 3u7z_A Putative metal binding 49.1 26 0.00088 24.6 4.5 34 60-94 6-40 (101)
48 1wia_A Hypothetical ubiquitin- 46.8 41 0.0014 22.1 5.2 34 58-92 3-36 (95)
49 3plu_A Ubiquitin-like modifier 43.7 28 0.00096 24.1 4.0 29 60-89 19-47 (93)
50 1ep3_B Dihydroorotate dehydrog 43.2 9.5 0.00033 29.8 1.7 25 90-114 209-239 (262)
51 2k02_A Ferrous iron transport 42.1 9.2 0.00032 26.1 1.2 26 85-110 35-65 (87)
52 2l32_A Small archaeal modifier 41.2 57 0.0019 21.1 5.0 24 75-98 12-35 (74)
53 2l05_A Serine/threonine-protei 39.5 48 0.0017 23.1 4.6 45 64-114 19-63 (95)
54 1v86_A DNA segment, CHR 7, way 38.8 69 0.0024 21.2 5.4 27 61-89 16-42 (95)
55 1e0g_A Membrane-bound lytic mu 37.7 19 0.00065 20.4 2.0 22 76-97 3-24 (48)
56 1wh3_A 59 kDa 2'-5'-oligoadeny 36.3 71 0.0024 20.2 5.0 28 61-89 6-33 (87)
57 1xn7_A Hypothetical protein YH 35.6 16 0.00053 24.3 1.5 26 85-110 35-65 (78)
58 2hj1_A Hypothetical protein; s 35.4 19 0.00067 24.9 2.1 34 63-96 15-48 (97)
59 1rrb_A RAF-1 RBD, RAF proto-on 35.1 36 0.0012 24.3 3.4 46 64-115 20-65 (107)
60 2uyz_B Small ubiquitin-related 33.9 60 0.002 20.2 4.2 36 60-96 1-40 (79)
61 1c1y_B Proto-onkogene serine/t 31.6 61 0.0021 21.8 4.0 39 72-115 10-48 (77)
62 3v6c_B Ubiquitin; structural g 31.0 97 0.0033 20.0 5.0 37 60-97 15-55 (91)
63 3ny5_A Serine/threonine-protei 30.7 69 0.0024 22.4 4.2 47 63-115 14-60 (96)
64 1wxm_A A-RAF proto-oncogene se 29.8 62 0.0021 22.2 3.8 45 64-114 9-53 (86)
65 2kmm_A Guanosine-3',5'-BIS(dip 29.7 36 0.0012 21.1 2.5 24 72-97 9-32 (73)
66 3phx_B Ubiquitin-like protein 29.1 85 0.0029 19.5 4.3 27 62-89 4-30 (79)
67 2dzi_A Ubiquitin-like protein 28.6 1.1E+02 0.0036 18.9 5.0 35 61-96 6-44 (81)
68 1v5t_A 8430435I17RIK protein; 28.2 58 0.002 21.3 3.5 33 62-96 7-44 (90)
69 2k5p_A THis protein, thiamine- 28.2 51 0.0017 21.6 3.1 27 64-96 2-30 (78)
70 1tyg_B YJBS; alpha beta barrel 27.1 57 0.002 22.0 3.3 28 63-96 21-49 (87)
71 2wyq_A HHR23A, UV excision rep 26.7 1.1E+02 0.0037 19.2 4.6 27 62-89 5-31 (85)
72 2hj8_A Interferon-induced 17 k 25.1 1E+02 0.0035 19.8 4.2 28 61-89 3-30 (88)
73 3kwl_A Uncharacterized protein 25.0 61 0.0021 28.6 3.9 38 75-120 44-81 (514)
74 3mtn_B UBA80, ubcep1, ubiquiti 25.0 1E+02 0.0035 19.1 4.2 27 62-89 3-29 (85)
75 4dwf_A HLA-B-associated transc 24.8 1E+02 0.0035 19.7 4.2 27 62-89 5-31 (90)
76 3dbh_I NEDD8; cell cycle, acti 24.7 1.3E+02 0.0046 18.8 5.2 36 61-97 11-50 (88)
77 2djp_A Hypothetical protein SB 24.4 31 0.0011 21.9 1.5 22 76-97 16-37 (77)
78 1wgd_A Homocysteine-responsive 23.4 1.2E+02 0.0039 19.7 4.3 29 60-89 5-35 (93)
79 2kl0_A Putative thiamin biosyn 23.4 93 0.0032 19.9 3.7 26 64-96 2-27 (73)
80 1v2y_A 3300001G02RIK protein; 23.0 1.6E+02 0.0053 20.4 5.1 26 62-88 7-32 (105)
81 2lg4_A Aurelin; antimicrobial 28.7 18 0.0006 21.4 0.0 17 92-109 24-40 (40)
82 1wx8_A Riken cDNA 4931431F19; 22.1 1.5E+02 0.0053 19.1 4.8 35 60-96 15-53 (96)
83 1wgr_A Growth factor receptor- 22.0 1.9E+02 0.0066 20.0 5.3 40 61-101 8-47 (100)
84 1wgg_A Ubiquitin carboxyl-term 21.7 1.5E+02 0.005 19.7 4.6 36 61-98 6-46 (96)
85 2gow_A HCG-1 protein, ubiquiti 20.8 1.7E+02 0.0058 20.8 5.0 29 62-91 17-45 (125)
86 1wxv_A BAG-family molecular ch 20.7 1.7E+02 0.0059 18.7 4.8 27 61-89 6-37 (92)
87 1j8c_A Ubiquitin-like protein 20.5 2.2E+02 0.0077 19.8 6.6 28 60-89 30-57 (125)
88 2bb6_A TCII, TC II, transcobal 20.3 82 0.0028 27.4 3.7 32 63-94 319-350 (414)
89 4eew_A Large proline-rich prot 20.1 1.4E+02 0.0049 18.8 4.2 27 62-89 17-43 (88)
No 1
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.92 E-value=1.1e-24 Score=156.28 Aligned_cols=96 Identities=34% Similarity=0.668 Sum_probs=87.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.++|+|.. +|..++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||+
T Consensus 2 ~~~v~~~~--~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (98)
T 1iue_A 2 FYNITLRT--NDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTC 79 (98)
T ss_dssp EEEEEEEE--TTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred cEEEEEEe--CCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeEC
Confidence 47888875 2435789999999999999999999999999999999999999999988888889988889999999999
Q ss_pred EeCCCeEEEeCCchHHHH
Q 031115 142 YPSSDVEVETQDEDEVKY 159 (165)
Q Consensus 142 ~~~sDi~Ielp~~~~~~~ 159 (165)
++.+|++|++++++++|+
T Consensus 80 ~~~~d~~i~~~~~~~~~~ 97 (98)
T 1iue_A 80 YPKSDCVIETHKEDELHD 97 (98)
T ss_dssp EESSCEEEECCCHHHHHT
T ss_pred EECCCeEEEeCChHhhcc
Confidence 999999999999988874
No 2
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.91 E-value=1.2e-24 Score=155.91 Aligned_cols=96 Identities=41% Similarity=0.763 Sum_probs=86.3
Q ss_pred ceEEEEEeCCCCc-EEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeee
Q 031115 62 THKVTVHDRFRGV-VHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCV 140 (165)
Q Consensus 62 ~~~Vti~~~~~G~-~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCq 140 (165)
.++|+|.+. +|. .++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||
T Consensus 2 ~~~V~~~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq 80 (98)
T 1czp_A 2 TFKVTLINE-AEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCV 80 (98)
T ss_dssp EEEEEEEET-TTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGG
T ss_pred ceEEEEEeC-CCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeee
Confidence 478999763 332 489999999999999999999999999999999999999999998887778998888999999999
Q ss_pred eEeCCCeEEEeCCchHHH
Q 031115 141 GYPSSDVEVETQDEDEVK 158 (165)
Q Consensus 141 a~~~sDi~Ielp~~~~~~ 158 (165)
+++.+|++|++++++++|
T Consensus 81 ~~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 81 AYPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp CEESSCEEEECCCTTTTC
T ss_pred CEECCCEEEEeccccccC
Confidence 999999999999887764
No 3
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.91 E-value=1.2e-24 Score=154.41 Aligned_cols=94 Identities=33% Similarity=0.623 Sum_probs=85.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGY 142 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~ 142 (165)
++|+|... +| .++|++++|+|||++|+++||.+++.|+.|.||+|+|+|.+|.+.+.+...|+++++++|+||+||++
T Consensus 2 ~~v~~~~~-~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~ 79 (95)
T 1frr_A 2 YKTVLKTP-SG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI 79 (95)
T ss_dssp EEEEEEET-TE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred eEEEEEeC-CC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECE
Confidence 67888732 45 57899999999999999999999999999999999999999999888888899888899999999999
Q ss_pred eCCCeEEEeCCchHHH
Q 031115 143 PSSDVEVETQDEDEVK 158 (165)
Q Consensus 143 ~~sDi~Ielp~~~~~~ 158 (165)
+.+|++|++++++++|
T Consensus 80 ~~~~~~v~~~~~~~~~ 95 (95)
T 1frr_A 80 PESDLVIETHKEEELF 95 (95)
T ss_dssp ESSCEEEECCCTTTTC
T ss_pred ECCCEEEEEcchhhcC
Confidence 9999999999877653
No 4
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.91 E-value=2.6e-24 Score=153.04 Aligned_cols=94 Identities=38% Similarity=0.735 Sum_probs=84.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeE
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGY 142 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~ 142 (165)
|+|+|... +| .++|++++|+|||++|+++|+.++++|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||++
T Consensus 1 ~~v~~~~~-~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 78 (94)
T 1awd_A 1 YKVTLKTP-SG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAY 78 (94)
T ss_dssp CEEEEEET-TE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred CEEEEEeC-CC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECE
Confidence 46888642 34 57899999999999999999999999999999999999999999888888899888899999999999
Q ss_pred eCCCeEEEeCCchHHH
Q 031115 143 PSSDVEVETQDEDEVK 158 (165)
Q Consensus 143 ~~sDi~Ielp~~~~~~ 158 (165)
+.+|++|++++++++|
T Consensus 79 ~~~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 79 PTSDVTILTHQEAALY 94 (94)
T ss_dssp ESSCEEEECCCGGGGC
T ss_pred ECCCEEEEecchhccC
Confidence 9999999999988764
No 5
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.91 E-value=2.6e-24 Score=153.80 Aligned_cols=96 Identities=31% Similarity=0.642 Sum_probs=85.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
+++|+|.....+..++|++++|+|||++|+++||.+|+.|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47889986322114899999999999999999999999999999999999999999988887889988889999999999
Q ss_pred EeCCCeEEEeCCchHH
Q 031115 142 YPSSDVEVETQDEDEV 157 (165)
Q Consensus 142 ~~~sDi~Ielp~~~~~ 157 (165)
++.+|++|++++++++
T Consensus 82 ~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 82 YPRSNCTIKTHQEPYL 97 (98)
T ss_dssp EESSSEEEECCCGGGC
T ss_pred EECCCEEEEecchhhc
Confidence 9999999999987654
No 6
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.91 E-value=2.1e-24 Score=154.47 Aligned_cols=95 Identities=39% Similarity=0.764 Sum_probs=85.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.++|+|... +| .++|++++|+|||++|+++|+.+++.|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||+
T Consensus 2 ~~~v~~~~~-~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (97)
T 1a70_A 2 AYKVTLVTP-TG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAA 79 (97)
T ss_dssp EEEEEEEET-TE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGC
T ss_pred eEEEEEEeC-Cc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeEC
Confidence 478888742 33 5789999999999999999999999999999999999999999988887889988888999999999
Q ss_pred EeCCCeEEEeCCchHHH
Q 031115 142 YPSSDVEVETQDEDEVK 158 (165)
Q Consensus 142 ~~~sDi~Ielp~~~~~~ 158 (165)
++.+|++|++++++++|
T Consensus 80 ~~~~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 80 YPVSDVTIETHKKEELT 96 (97)
T ss_dssp EESSCEEEECCCGGGCC
T ss_pred EECCCEEEEeCchhhcc
Confidence 99999999999987765
No 7
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.90 E-value=8.8e-24 Score=150.19 Aligned_cols=93 Identities=33% Similarity=0.620 Sum_probs=83.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
+++|+|... +| .++|++++|+|||++|+++| .+++.|+.|.||+|+|+|++|.+.+.+...|+++++++||||+||+
T Consensus 1 ~~~V~~~~~-~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~ 77 (93)
T 1wri_A 1 AYKVTLKTP-DG-DITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIA 77 (93)
T ss_dssp CEEEEEEET-TE-EEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTC
T ss_pred CEEEEEEEC-CC-eEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeC
Confidence 367888742 33 58899999999999999999 9999999999999999999999988887889988889999999999
Q ss_pred EeCCCeEEEeCCchHH
Q 031115 142 YPSSDVEVETQDEDEV 157 (165)
Q Consensus 142 ~~~sDi~Ielp~~~~~ 157 (165)
++.+|++|+++.++++
T Consensus 78 ~~~~d~~v~~~~~~~~ 93 (93)
T 1wri_A 78 IPESDVVIETHKEDEL 93 (93)
T ss_dssp EESSCEEEECCCGGGC
T ss_pred EECCCEEEEecccccC
Confidence 9999999999987653
No 8
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.88 E-value=1.3e-23 Score=150.23 Aligned_cols=92 Identities=28% Similarity=0.498 Sum_probs=82.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCC--cccCCCChhhhcCCeEEee
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYALLC 139 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~G~rLaC 139 (165)
+++|+|... +|..++|++++|+|||++|+++|+.+++.|+.|.||+|+|+|++|.+.+ .+...|+++++++|+||+|
T Consensus 4 ~~~v~~~~~-~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaC 82 (98)
T 1jq4_A 4 VHTITAVTE-DGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLC 82 (98)
T ss_dssp EEEEEEEET-TTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTT
T ss_pred cEEEEEEec-CCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEe
Confidence 588999853 4556899999999999999999999999999999999999999999875 4667788888889999999
Q ss_pred eeEeCCCeEEEeCCc
Q 031115 140 VGYPSSDVEVETQDE 154 (165)
Q Consensus 140 qa~~~sDi~Ielp~~ 154 (165)
|+++.+|++|+++.+
T Consensus 83 q~~~~~d~~v~~~~~ 97 (98)
T 1jq4_A 83 RTYPKTDLEIELPYT 97 (98)
T ss_dssp TCCSSCCSEEECSCC
T ss_pred eCEECCCEEEEecCC
Confidence 999999999999764
No 9
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.86 E-value=1.3e-22 Score=152.88 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCccC------CcccCCCC-hh
Q 031115 59 SIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIK------QPEALGIS-AE 129 (165)
Q Consensus 59 ~~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~------~~e~~~Ls-~~ 129 (165)
...|++|+|... +|..++|++++|+|||++|+++||+ |++.|+ .|.||+|+|+|++|.+. ..|...|+ .+
T Consensus 18 ~~~M~~Vt~~~~-~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~ 96 (126)
T 3hui_A 18 GSHMAKINFVDH-TGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGY 96 (126)
T ss_dssp TCSEEEEEEECT-TSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSS
T ss_pred CCCceEEEEEeC-CCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchh
Confidence 356789999842 6878899999999999999999999 999999 89999999999999743 22445677 36
Q ss_pred hhcCCeEEeeeeEeCCC---eEEEeCCch
Q 031115 130 LKSKGYALLCVGYPSSD---VEVETQDED 155 (165)
Q Consensus 130 e~~~G~rLaCqa~~~sD---i~Ielp~~~ 155 (165)
++++||||+||+++.+| ++|++|+.+
T Consensus 97 e~~~g~RLaCQ~~~~~dldgl~V~lp~~~ 125 (126)
T 3hui_A 97 DVRPNSRLSCQIKVSNELDGLIVTTPERQ 125 (126)
T ss_dssp SCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred hccCCeEEeeeCEECcCCCcEEEEecCcC
Confidence 77899999999999998 999999764
No 10
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.86 E-value=1.2e-22 Score=147.75 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=78.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCccCC------cccCCCCh-hhhcCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKSKG 134 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e~~~G 134 (165)
+|+|... +|..++|++++|+|||++++++||+ |+++|+ .|.||+|+|+|++|.+.+ .+...|+. +++++|
T Consensus 2 ~vt~~~~-~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 2 AILVTTR-DGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp EEEEECT-TSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred EEEEEeC-CCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence 6888764 7888999999999999999999999 999999 999999999999997642 23445665 678899
Q ss_pred eEEeeeeEeCCC---eEEEeCCc
Q 031115 135 YALLCVGYPSSD---VEVETQDE 154 (165)
Q Consensus 135 ~rLaCqa~~~sD---i~Ielp~~ 154 (165)
|||+||+++.+| ++|++|++
T Consensus 81 ~rLaCq~~~~~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 81 SRLSCQITINDKLEGLEVEIAPE 103 (104)
T ss_dssp EEEGGGCBCCGGGTTCEEEECCC
T ss_pred cEEEeeCEEccCCCCEEEEecCC
Confidence 999999999998 99999975
No 11
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.85 E-value=4.3e-22 Score=145.88 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=76.0
Q ss_pred eEEEEEeCCCC---cEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCc-----ccCCCChh-hhc
Q 031115 63 HKVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP-----EALGISAE-LKS 132 (165)
Q Consensus 63 ~~Vti~~~~~G---~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~-----e~~~Ls~~-e~~ 132 (165)
++|+|.+. +| ..++|++++|+|||++|+++||+|++.|+ .|.||+|+|+|++|..... +...|+.+ +++
T Consensus 2 ~~vt~~~~-~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 2 PLVTFLPH-EKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CEEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CEEEEEcC-CCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 57888763 33 34899999999999999999999999999 7999999999999974331 33446654 678
Q ss_pred CCeEEeeeeEeC-CCeEEEeCCch
Q 031115 133 KGYALLCVGYPS-SDVEVETQDED 155 (165)
Q Consensus 133 ~G~rLaCqa~~~-sDi~Ielp~~~ 155 (165)
+|+||+||+++. +|++|+++...
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~ 104 (113)
T 3ah7_A 81 AQSRLGCQVFVADEDLTIEIPKYS 104 (113)
T ss_dssp TTEEEGGGCBCCSSCEEEECCSCC
T ss_pred CCcEEeeeCEEeCCCEEEEECchh
Confidence 899999999998 89999998653
No 12
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=146.75 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=77.7
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCC------cccCCCCh-hhhc
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKS 132 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e~~ 132 (165)
.+++|+|.. .+|..++|++++|+|||++|+++||+|++.|+ .|.||+|+|+|.+|.+.+ .|...|+. .+++
T Consensus 4 ~m~~v~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 82 (109)
T 2y5c_A 4 DVVNVVFVD-RSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82 (109)
T ss_dssp CEEEEEEEC-TTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCC
T ss_pred CcEEEEEEc-CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCC
Confidence 367888864 26877789999999999999999999999999 599999999999996432 13344553 4678
Q ss_pred CCeEEeeeeEeCCC---eEEEeCCch
Q 031115 133 KGYALLCVGYPSSD---VEVETQDED 155 (165)
Q Consensus 133 ~G~rLaCqa~~~sD---i~Ielp~~~ 155 (165)
+||||+||+++.+| ++|++|+..
T Consensus 83 ~g~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 83 ENSRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp TTEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred CCcEeeEEeEEecCCCeEEEEecCCC
Confidence 99999999999986 999998653
No 13
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.85 E-value=3.5e-22 Score=145.28 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=76.1
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC--CCCC-ceeccCceEEEecCccCC------cccCCCCh-hh
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-EL 130 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip--~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e 130 (165)
.+++|+|... +|..++|++++|+|||++|+++||+|+ +.|+ .|.||+|+|+|.+|.+.. .|...|+. .+
T Consensus 5 ~m~~V~~~~~-~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~ 83 (108)
T 2bt6_A 5 DKITVHFINR-DGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83 (108)
T ss_dssp CEEEEEEECT-TSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTT
T ss_pred ceEEEEEECC-CCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCccc
Confidence 3578999842 687779999999999999999999999 9998 699999999999995432 24455664 56
Q ss_pred hcCCeEEeeeeEeCC---CeEEEeC
Q 031115 131 KSKGYALLCVGYPSS---DVEVETQ 152 (165)
Q Consensus 131 ~~~G~rLaCqa~~~s---Di~Ielp 152 (165)
+++||||+||+++.+ +++|++|
T Consensus 84 ~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 84 LTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp CCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCCCcEeeEEEEecCCCCCEEEEcC
Confidence 789999999999988 5999876
No 14
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.85 E-value=7.4e-22 Score=142.98 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=75.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCcc------CCcccCCCChhh-h-cC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQI------KQPEALGISAEL-K-SK 133 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v------~~~e~~~Ls~~e-~-~~ 133 (165)
+|+|.. .+|..++|++++|+|||++|+++||+ |++.|+ .|.||+|+|+|.+|.+ ...+...|+..+ . ++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1xlq_A 2 KVVYVS-HDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKP 80 (106)
T ss_dssp EEEEEC-TTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 577743 26877899999999999999999999 999996 8999999999999943 223445666654 6 88
Q ss_pred CeEEeeeeEeCC---CeEEEeCCc
Q 031115 134 GYALLCVGYPSS---DVEVETQDE 154 (165)
Q Consensus 134 G~rLaCqa~~~s---Di~Ielp~~ 154 (165)
|+||+||+++.+ +++|++|..
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~ 104 (106)
T 1xlq_A 81 NSRLCCQIIMTPELDGIVVDVPDR 104 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSC
T ss_pred CcEeeeeeEeecCCCCEEEEecCc
Confidence 999999999998 699999865
No 15
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.84 E-value=9.2e-22 Score=142.48 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=75.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCccCC------cccCCCChh-hhc-C
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-LKS-K 133 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~~-e~~-~ 133 (165)
+|+|.. .+|..++|++++|+|||++|+++||+ |+++|+ .|.||+|+|+|++|.+.+ .+...|+.. +++ +
T Consensus 2 ~v~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 2 KIIFIE-HNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp EEEEEC-TTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 577743 26777899999999999999999999 999996 899999999999995432 244567765 577 9
Q ss_pred CeEEeeeeEeCC---CeEEEeCCc
Q 031115 134 GYALLCVGYPSS---DVEVETQDE 154 (165)
Q Consensus 134 G~rLaCqa~~~s---Di~Ielp~~ 154 (165)
|+||+||+++.+ +++|++|..
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~ 104 (106)
T 1uwm_A 81 TSRLTCQIKVTSLLDGLVVHLPEK 104 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSC
T ss_pred CcEecccCEEccCCCCEEEEecCC
Confidence 999999999998 599999864
No 16
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.5e-21 Score=140.73 Aligned_cols=90 Identities=22% Similarity=0.180 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCc------ccCCCCh-hhhcC
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP------EALGISA-ELKSK 133 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~------e~~~Ls~-~e~~~ 133 (165)
.++|+|.. .+|..++|++++|+|||++|+++||.+++.|+ .|.||+|+|+|.+|.+.+. |...|+. .+.++
T Consensus 3 ~~~v~~~~-~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 3 GIKVFFVT-PEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp CEEEEEEC-TTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred ceEEEEEe-CCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 47888883 26777899999999999999999999999999 8999999999999976532 2335555 35788
Q ss_pred CeEEeeeeEeCCC---eEEEeC
Q 031115 134 GYALLCVGYPSSD---VEVETQ 152 (165)
Q Consensus 134 G~rLaCqa~~~sD---i~Ielp 152 (165)
|+||+||+++.+| ++|++|
T Consensus 82 g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 82 TSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TEEEGGGCBCCGGGTTEEEECC
T ss_pred CcEeeEeeEeCCCCCcEEEEcC
Confidence 9999999999999 999876
No 17
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.84 E-value=1.8e-22 Score=145.99 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=75.8
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCc------cCCcccCCCC--hhhhcC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQ------IKQPEALGIS--AELKSK 133 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~------v~~~e~~~Ls--~~e~~~ 133 (165)
+|+|.. .+|..++|++++|+|||++|+++||+ |++.|+ .|.||+|+|+|.+|. +...+...|+ ..++++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (105)
T 1b9r_A 2 RVVFID-EQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA 80 (105)
T ss_dssp EEEECC-TTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 577732 26766899999999999999999999 999999 799999999999994 3344555666 467889
Q ss_pred CeEEeeeeEeCC---CeEEEeCCc
Q 031115 134 GYALLCVGYPSS---DVEVETQDE 154 (165)
Q Consensus 134 G~rLaCqa~~~s---Di~Ielp~~ 154 (165)
||||+||+++.+ |++|++|..
T Consensus 81 g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 81 GTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred CcEeeeeCEecCCCCcEEEEecCC
Confidence 999999999998 799999864
No 18
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.83 E-value=1.2e-20 Score=158.92 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=83.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCC----cccCCCChhhhcCCe
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ----PEALGISAELKSKGY 135 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~----~e~~~Ls~~e~~~G~ 135 (165)
|++++|+|... +|..++|++++|+||||+|+++||.+++.|+.|.||+|+|+|++|.+.+ .+...|+++++++|+
T Consensus 1 m~~~~v~~~~~-~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~ 79 (338)
T 1krh_A 1 MSNHQVALQFE-DGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGY 79 (338)
T ss_dssp -CCEEEEEECT-TSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTE
T ss_pred CCceEEEEEEc-CCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCe
Confidence 45689999853 4556899999999999999999999999999999999999999998865 266789988899999
Q ss_pred EEeeeeEeCCCeEEEeCCch
Q 031115 136 ALLCVGYPSSDVEVETQDED 155 (165)
Q Consensus 136 rLaCqa~~~sDi~Ielp~~~ 155 (165)
||+||+++.+|++|+++...
T Consensus 80 ~LaCq~~~~~~~~v~~~~~~ 99 (338)
T 1krh_A 80 VLACQCRPTSDAVFQIQASS 99 (338)
T ss_dssp EETTTCEESSSEEEEESSCT
T ss_pred EEEEeCEECCCeEEEEeccc
Confidence 99999999999999998753
No 19
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.83 E-value=4e-21 Score=144.85 Aligned_cols=87 Identities=32% Similarity=0.596 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCcEE-EEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCCcccCCCChhh-hcCCeEEeee
Q 031115 63 HKVTVHDRFRGVVH-EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAEL-KSKGYALLCV 140 (165)
Q Consensus 63 ~~Vti~~~~~G~~~-~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e-~~~G~rLaCq 140 (165)
.+|+|.. +| + ++++++|+|||++|+++|+.++++|+.|.||+|+++|++|.+.+.+...|+.++ .++|+||+||
T Consensus 28 ~~i~i~~--~g--~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq 103 (128)
T 1doi_A 28 SDMDLDD--ED--YGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCI 103 (128)
T ss_dssp HHSCCCT--TT--EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGG
T ss_pred cEEEEEe--CC--cEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEE
Confidence 4555643 56 5 899999999999999999999999999999999999999999887777888855 6899999999
Q ss_pred eEeCCC-eEEEeCC
Q 031115 141 GYPSSD-VEVETQD 153 (165)
Q Consensus 141 a~~~sD-i~Ielp~ 153 (165)
+++.+| ++|++..
T Consensus 104 ~~~~~d~i~i~~~~ 117 (128)
T 1doi_A 104 GSPDADEVKIVYNA 117 (128)
T ss_dssp EEECSSEEEEEECG
T ss_pred eEEcCCeEEEEecC
Confidence 999999 8887653
No 20
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.82 E-value=2.2e-20 Score=157.20 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=83.6
Q ss_pred cccccccccCCCCCC-----CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccC
Q 031115 45 ELQTTAGVNGSYSPS-----IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIK 119 (165)
Q Consensus 45 ~~~~~~~~~~~~~p~-----~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~ 119 (165)
|....+|.+.|..+. ...++|+|.+ +| ++|++++|+||||+++++||+++++|+.|.||+|+++|++|++.
T Consensus 215 ~~~~~i~~E~F~~~~~~~~~~~~~~v~~~~--~~--~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G~~~ 290 (321)
T 2pia_A 215 WPSGTVHFESFGATNTNARENTPFTVRLSR--SG--TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEAD 290 (321)
T ss_dssp SCTTCEEEECCCCCCCCCSCCCCEEEEETT--TC--CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEE
T ss_pred CCHhhEEEEecCCCCCCCCCCccEEEEEeC--CC--eEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecCccc
Confidence 445566666654321 2357787764 45 78999999999999999999999999999999999999999998
Q ss_pred CcccCCCChhhhcCCeEEeeeeEeCCC-eEEEe
Q 031115 120 QPEALGISAELKSKGYALLCVGYPSSD-VEVET 151 (165)
Q Consensus 120 ~~e~~~Ls~~e~~~G~rLaCqa~~~sD-i~Iel 151 (165)
+.+ ..|+++++ +|++|+||+++.+| ++|++
T Consensus 291 ~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l 321 (321)
T 2pia_A 291 HRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL 321 (321)
T ss_dssp CCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred ccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence 766 57888888 99999999999998 88864
No 21
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.82 E-value=1.5e-20 Score=137.44 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=73.5
Q ss_pred eEEEEEeCCCC---cEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCcc-----cCCCChh-hhc
Q 031115 63 HKVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPE-----ALGISAE-LKS 132 (165)
Q Consensus 63 ~~Vti~~~~~G---~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e-----~~~Ls~~-e~~ 132 (165)
++|+|... +| ..++|++++|+|||++|+++|+.+++.|+ .|.||+|+|+|.+|.+.+.. ...|+.. +.+
T Consensus 2 ~~i~~~~~-~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (111)
T 1i7h_A 2 PKIVILPH-QDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE 80 (111)
T ss_dssp CEEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred CEEEEEeC-CCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence 46777652 22 33899999999999999999999999995 99999999999999876532 2223322 456
Q ss_pred CCeEEeeeeEeC-CCeEEEeCCch
Q 031115 133 KGYALLCVGYPS-SDVEVETQDED 155 (165)
Q Consensus 133 ~G~rLaCqa~~~-sDi~Ielp~~~ 155 (165)
+|+||+||+++. +|++|+++..+
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~ 104 (111)
T 1i7h_A 81 PESRLSCQARVTDEDLVVEIPRYT 104 (111)
T ss_dssp TTEEETTTCBCCSSCEEEECCSCC
T ss_pred CCcEEEEEEEEeCCCEEEEEChHH
Confidence 799999999995 89999998643
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.81 E-value=1.7e-20 Score=172.46 Aligned_cols=96 Identities=24% Similarity=0.447 Sum_probs=87.2
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceeccCceEEEecCccCCcccCCCChhhhcCCeEEe
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALL 138 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLa 138 (165)
|.+++|+|.+ +| ++|++++|+|||++++++|++++++|+ .|.||+|+|+|++|.+.+.+...|+++++++|+||+
T Consensus 1 M~m~~V~~~~--sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLa 76 (631)
T 3zyy_X 1 MAEYKVLFKP--DQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLA 76 (631)
T ss_dssp --CEEEEEET--TT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEET
T ss_pred CCceEEEEec--CC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEe
Confidence 5578999986 57 899999999999999999999999999 999999999999999988888889998999999999
Q ss_pred eeeEeCCCeEEEeCCchHHHH
Q 031115 139 CVGYPSSDVEVETQDEDEVKY 159 (165)
Q Consensus 139 Cqa~~~sDi~Ielp~~~~~~~ 159 (165)
||+++.+|++|++|+.+++++
T Consensus 77 Cqa~~~sDl~Ielp~~~~~~~ 97 (631)
T 3zyy_X 77 CQTYPESDLIIEIPFDSRLTQ 97 (631)
T ss_dssp TTEEECSSEEEECCTTSSCSS
T ss_pred eeCEECCCEEEEecchhhhhh
Confidence 999999999999998876543
No 23
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.80 E-value=4.8e-20 Score=130.93 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceeccCceEEEecCccCCc---ccCCCChhhhcCCeEEe
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQP---EALGISAELKSKGYALL 138 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~~---e~~~Ls~~e~~~G~rLa 138 (165)
+|+|.+ +|..++|++++|+|||++|+++|++ +++.|+ .|.||+|+|+|.+|.+.+. +...|+ ++++||||+
T Consensus 2 ~v~i~~--~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLa 77 (93)
T 1l5p_A 2 TITAVK--GGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLA 77 (93)
T ss_dssp EEEEEE--TTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEG
T ss_pred eEEEEe--CCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEe
Confidence 466665 6866799999999999999999999 999999 9999999999999987532 334555 678999999
Q ss_pred eeeEeCCC---eEEEe
Q 031115 139 CVGYPSSD---VEVET 151 (165)
Q Consensus 139 Cqa~~~sD---i~Iel 151 (165)
||+++.+| ++|++
T Consensus 78 Cq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 78 CAITLSGENDGAVFEL 93 (93)
T ss_dssp GGCEECGGGTTCEEEC
T ss_pred eECEECCCCCceEEEC
Confidence 99999887 55553
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.76 E-value=1.9e-20 Score=140.33 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=20.1
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC--CCCC-ceeccCceEEEecCccC-C-----cccCCCCh-h
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACR-HGCCTSCAVRIKSGQIK-Q-----PEALGISA-E 129 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip--~~C~-~G~CGtC~V~v~~G~v~-~-----~e~~~Ls~-~ 129 (165)
+.+++|+|... +|..++|++++|+|||++|+++||+|+ +.|+ .|.||+|+|+|.+|... . .|...|+. .
T Consensus 3 ~~~v~Vtf~~~-~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 3 EDKITVHFINR-DGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred CCcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 34678888752 687789999999999999999999999 9999 89999999999975332 1 23445553 4
Q ss_pred hhcCCeEEeeeeEeCC---CeEEEeCCchHH
Q 031115 130 LKSKGYALLCVGYPSS---DVEVETQDEDEV 157 (165)
Q Consensus 130 e~~~G~rLaCqa~~~s---Di~Ielp~~~~~ 157 (165)
++.+++||+||+++.+ |++|++|....-
T Consensus 82 ~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~ 112 (123)
T 3n9z_C 82 GLTDRSRLGCQICLTKSMDNMTVRVPETVAD 112 (123)
T ss_dssp ------CBCC---------------------
T ss_pred cccCCeEEeeEeEEccCCCCEEEEECccccc
Confidence 5678999999999998 799999977544
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.86 E-value=2.8e-09 Score=99.73 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=61.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCC------CceeccCceEEEecCccCCcccCCCChhh-----h
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC------RHGCCTSCAVRIKSGQIKQPEALGISAEL-----K 131 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C------~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e-----~ 131 (165)
++|+| +| +++++++|+|||+|++++||.||+.| ..|.|+.|.|+|..+.........++++. .
T Consensus 2 v~i~i----dg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~ 75 (783)
T 3i9v_3 2 VRVKV----ND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQW 75 (783)
T ss_dssp EEEEC----SS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCB
T ss_pred eEEEE----CC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEeccccccccccccccccccccccc
Confidence 44555 57 68999999999999999999999999 58999999999963221111111111111 1
Q ss_pred cCCeEEeeeeEeCCCeEEEeCCc
Q 031115 132 SKGYALLCVGYPSSDVEVETQDE 154 (165)
Q Consensus 132 ~~G~rLaCqa~~~sDi~Ielp~~ 154 (165)
..+.++||++.+..+|+|++...
T Consensus 76 ~~~~~~aC~t~v~~gm~v~t~~~ 98 (783)
T 3i9v_3 76 QPKLAASCVTAVADGMVVDTLSD 98 (783)
T ss_dssp CSSCEETTTCBCCSSEEEESSSH
T ss_pred CCCcccccCCCCCCCCEEEECCH
Confidence 24678999999999999998754
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.77 E-value=2e-08 Score=78.30 Aligned_cols=67 Identities=19% Similarity=0.418 Sum_probs=52.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CCC-CCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NIT-LPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI~-ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.|+|.. +|+.+++++++|+|||++++++ |+. ++++|+.|.||+|.|.| +|. .+++|..
T Consensus 11 ~i~~~i--ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~ 70 (168)
T 1t3q_A 11 RISATI--NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT 70 (168)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence 455543 5877888899999999999996 997 89999999999999999 553 3677777
Q ss_pred EeCC--CeEEE
Q 031115 142 YPSS--DVEVE 150 (165)
Q Consensus 142 ~~~s--Di~Ie 150 (165)
.+.. +.+|.
T Consensus 71 ~~~~~~G~~v~ 81 (168)
T 1t3q_A 71 LAVQAEGCSIE 81 (168)
T ss_dssp BGGGGTTCEEE
T ss_pred HHHHhCCCeEE
Confidence 6554 44443
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.54 E-value=1.6e-07 Score=85.20 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=58.1
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-------ceeccCceEEEecCccCCcccCCCChhhhcCCeEE
Q 031115 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYAL 137 (165)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~-------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rL 137 (165)
|+|.. +| +.+++++|+|||++++++|+.+|+.|+ .|.||.|.|.|. |. . .++
T Consensus 2 v~~~i--ng--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~-g~---------------~-~~~ 60 (574)
T 3c8y_A 2 KTIII--NG--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT---------------G-LVT 60 (574)
T ss_dssp EEEEE--TT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT---------------E-EEE
T ss_pred eEEEE--CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeC-CC---------------c-ccc
Confidence 34443 57 789999999999999999999999998 889999999982 21 1 689
Q ss_pred eeeeEeCCCeEEEeCCc
Q 031115 138 LCVGYPSSDVEVETQDE 154 (165)
Q Consensus 138 aCqa~~~sDi~Ielp~~ 154 (165)
||++.+.++++|.+...
T Consensus 61 aC~t~v~~gm~V~T~~~ 77 (574)
T 3c8y_A 61 ACDTLIEDGMIINTNSD 77 (574)
T ss_dssp GGGCBCCTTCEEESSCH
T ss_pred cCCCCcccceeEEecch
Confidence 99999999999987653
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.42 E-value=1.7e-07 Score=75.75 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=48.4
Q ss_pred EEEEEeCCCChHHHHHHHCC------CCCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCCC--
Q 031115 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSD-- 146 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sD-- 146 (165)
.+++++++|+|||++|++.| +...++|+.|.||+|.|+| +|. .+|||++.+...
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~ 86 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTD 86 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTT
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCC
Confidence 37889999999999999998 3467799999999999996 553 278888887766
Q ss_pred -eEEEe
Q 031115 147 -VEVET 151 (165)
Q Consensus 147 -i~Iel 151 (165)
++|+-
T Consensus 87 ~~~i~~ 92 (243)
T 1kf6_B 87 GMKVEA 92 (243)
T ss_dssp CEEEEC
T ss_pred cEEEEe
Confidence 77764
No 29
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.37 E-value=9e-07 Score=68.58 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=49.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa 141 (165)
.|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||.|.|.| +|. .+++|..
T Consensus 4 ~i~~~v--NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~ 63 (161)
T 1rm6_C 4 ILRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACST 63 (161)
T ss_dssp EEEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred eEEEEE--CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHH
Confidence 455554 6877788889999999999997 75 588999999999999998 442 3777777
Q ss_pred EeCC
Q 031115 142 YPSS 145 (165)
Q Consensus 142 ~~~s 145 (165)
.+..
T Consensus 64 ~~~~ 67 (161)
T 1rm6_C 64 LAHQ 67 (161)
T ss_dssp BGGG
T ss_pred HHHH
Confidence 6543
No 30
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.36 E-value=2.7e-07 Score=74.57 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=35.9
Q ss_pred EEEEEeCCCChHHHHHHHCC------CCCCCCCCceeccCceEEEecCcc
Q 031115 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQI 118 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~v 118 (165)
.+++++++|+||||+|++.| +...++|+.|.||+|.|+| +|..
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~ 73 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP 73 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe
Confidence 36788899999999999764 4566799999999999999 7753
No 31
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.25 E-value=2.5e-06 Score=66.29 Aligned_cols=50 Identities=14% Similarity=0.404 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
..|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||.|.|.|.
T Consensus 4 ~~i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vd 55 (160)
T 3hrd_D 4 ITINLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFN 55 (160)
T ss_dssp EEEEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEET
T ss_pred ceEEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEEC
Confidence 4566654 6887889999999999999985 87 5899999999999999983
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.22 E-value=3.5e-06 Score=65.75 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecC
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G 116 (165)
..|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||.|.|.| +|
T Consensus 4 ~~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG 56 (166)
T 1n62_A 4 AHIELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DG 56 (166)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred ceEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CC
Confidence 4566654 6888888999999999999984 65 478999999999999998 44
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.22 E-value=3.5e-06 Score=65.57 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEecC
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G 116 (165)
..|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||.|.|.| +|
T Consensus 4 ~~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG 56 (163)
T 1ffv_A 4 KIITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DG 56 (163)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred ceEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CC
Confidence 3556654 6888888999999999999984 65 478999999999999998 44
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.16 E-value=1.4e-06 Score=70.09 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=35.7
Q ss_pred EEEEeCC--CChHHHHHHHCC-----CCCCCCCCceeccCceEEEecCc
Q 031115 76 HEFLVPE--DQYILHTAESQN-----ITLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 76 ~~~~v~~--getLLeaa~~~G-----I~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
+++++++ |+|||++|++.| +...++|+.|.||+|.|.| +|.
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~ 70 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK 70 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence 6788888 999999999987 5677899999999999998 554
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.99 E-value=5.1e-06 Score=67.74 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=44.1
Q ss_pred EEEEEeCC-CChHHHHHHHCCC------CCCCCCCceeccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEeCC--
Q 031115 75 VHEFLVPE-DQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS-- 145 (165)
Q Consensus 75 ~~~~~v~~-getLLeaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s-- 145 (165)
.+++++++ |+|||++|++.|+ ...++|+.|.||+|.|.| +|. .+|||++.+..
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~ 93 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDL 93 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCT
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcC
Confidence 35677777 9999999999862 356689999999999996 553 46788877654
Q ss_pred --CeEEE
Q 031115 146 --DVEVE 150 (165)
Q Consensus 146 --Di~Ie 150 (165)
.++|+
T Consensus 94 g~~~~ie 100 (252)
T 2h88_B 94 SKTTKIY 100 (252)
T ss_dssp TSCEEEE
T ss_pred CCceEEe
Confidence 26666
No 36
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.99 E-value=0.0011 Score=58.83 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=40.0
Q ss_pred EEEEeCCCCcEEEE-EeCCCChHHHHHHHCCC-CCCCCCCceeccCceEEEe
Q 031115 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 65 Vti~~~~~G~~~~~-~v~~getLLeaa~~~GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
|+|.- +|+.+++ .++++++||+++++.|+ ....+|+.|.||.|-|.|-
T Consensus 3 ~~~~v--Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v~ 52 (462)
T 2w3s_A 3 IAFLL--NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMIR 52 (462)
T ss_dssp EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEEE
Confidence 44443 6877777 77899999999997787 4899999999999999993
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.96 E-value=0.0015 Score=62.26 Aligned_cols=50 Identities=16% Similarity=0.495 Sum_probs=42.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceeccCceEEEecC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~-~GI-~ip~~C~~G~CGtC~V~v~~G 116 (165)
+|+|.- +|+.++++++++++||+++++ .|+ ....+|+.|.||.|-|.| +|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v-dg 54 (907)
T 1vlb_A 3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DG 54 (907)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE-CC
Confidence 455554 688888999999999999998 465 689999999999999998 44
No 38
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.94 E-value=0.00075 Score=56.47 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=33.6
Q ss_pred EEEEEeCC-CChHHHHHHHCCC------CCCCCCCceeccCceEEEecCc
Q 031115 75 VHEFLVPE-DQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQ 117 (165)
Q Consensus 75 ~~~~~v~~-getLLeaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~ 117 (165)
.+++++++ |.|||+++++.+. ....+|+.|.||+|.|.| +|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 46677777 9999999998664 244789999999999987 454
No 39
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.87 E-value=0.0011 Score=51.57 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=36.7
Q ss_pred CCcEE-EEEeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 72 RGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 72 ~G~~~-~~~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
+|+.+ .+.++++++||+++++. |+ ....+|+.|.||.|-|.|-
T Consensus 10 NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 10 NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 58543 45789999999999985 76 6899999999999999986
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.71 E-value=0.0019 Score=61.58 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=42.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceeccCceEEEecC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSG 116 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~-~GI-~ip~~C~~G~CGtC~V~v~~G 116 (165)
+|+|.- +|+.++++++++++||+++++ .|+ ....+|+.|.||.|-|.| +|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v-dg 54 (907)
T 1dgj_A 3 TKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG 54 (907)
T ss_dssp EEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE-CC
Confidence 355544 688888999999999999998 476 689999999999999998 44
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.017 Score=50.52 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.5
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC----CCCCC-cee--ccCceEEE
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL----PFACR-HGC--CTSCAVRI 113 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~i----p~~C~-~G~--CGtC~V~v 113 (165)
.|+|.. || +.+++.+|+||++|+.++|+++ +.. + .|. |+.|.|.|
T Consensus 15 ~v~~~~--dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 15 KVTIYF--EG--KELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV 66 (493)
T ss_dssp EEEEEE--TT--EEEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred eEEEEE--CC--EEEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence 455655 68 7899999999999999999965 222 3 455 78899976
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=93.60 E-value=0.082 Score=52.39 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=38.7
Q ss_pred EEEEeCCCCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 65 Vti~~~~~G~~~~~-~v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
|+|.- +|+.+++ .++++++||+.+++. |+ .....|+.|.||.|-|.|-
T Consensus 6 i~~~v--Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 6 LVFFV--NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp EEEEE--TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEE--CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 45543 5865554 589999999999984 76 4889999999999999994
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=92.98 E-value=0.2 Score=47.68 Aligned_cols=48 Identities=4% Similarity=-0.027 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCC-----------CceeccCceEEEe
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC-----------RHGCCTSCAVRIK 114 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C-----------~~G~CGtC~V~v~ 114 (165)
..|+|.. +| +.+++.+|+||+.|++.+|+.+...| ..|.|..|.|.+.
T Consensus 21 ~~~~~~~--dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 21 EALSLTV--DG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEE--TT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred CeEEEEE--CC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 3566665 68 88999999999999999999866555 3577999999997
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=89.95 E-value=0.41 Score=47.45 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCCcEEEEE-eCCCChHHHHHHHC-CC-CCCCCCCceeccCceEEEe
Q 031115 62 THKVTVHDRFRGVVHEFL-VPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~-v~~getLLeaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (165)
.-.++|.- +|+..++. +++..|||+.++.+ |+ .--..|+.|-||.|-|-|-
T Consensus 7 ~~~l~F~v--NG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 7 SDELIFFV--NGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp CCCEEEEE--TTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCeEEEEE--CCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 34566664 68433332 56999999999984 65 4778999999999999985
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.47 E-value=18 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=29.1
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCC
Q 031115 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITL 97 (165)
Q Consensus 58 p~~~~~~Vti~~~~~G~~~~~~v~~getLLea----a~~~GI~i 97 (165)
+.+++++|+|... .|+...+++.+.+|+.+. +.+.|++.
T Consensus 24 ~~~~mm~I~VKtl-~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~ 66 (100)
T 1uh6_A 24 GAATMIEVVCNDR-LGKKVRVKCNTDDTIGDLKKLIAAQTGTRW 66 (100)
T ss_dssp SCCCEEEEEEECS-SSSCEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CCCCeEEEEEECC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 4466789999874 578889999999998764 34556654
No 46
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=49.90 E-value=72 Score=23.24 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHH----HHHHCCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILH----TAESQNITL 97 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLe----aa~~~GI~i 97 (165)
+.+++|+|... +|....+++.+.+|+.+ .....||+.
T Consensus 18 ~~~m~i~Vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 18 GSHMQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp -CCEEEEEEET-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 44578888763 68888999999999987 344456543
No 47
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=49.06 E-value=26 Score=24.61 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCcEEEEEe-CCCChHHHHHHHCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQN 94 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v-~~getLLeaa~~~G 94 (165)
+..++|+|... +|....|.+ +.|++|+++|..+.
T Consensus 6 ~k~i~i~v~~~-~~~~~~~~v~t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHG-DQTENVFEFDTDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcC-CCceeEEEEcCCccHHHHHHHHcC
Confidence 34677777763 454444333 78999999999998
No 48
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.83 E-value=41 Score=22.11 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=26.0
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHH
Q 031115 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAES 92 (165)
Q Consensus 58 p~~~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~ 92 (165)
|.+..++|+|... .|....+++.+.+|+.+.-.+
T Consensus 3 ~~~~~m~i~Vk~~-~g~~~~~~v~~~~TV~~LK~~ 36 (95)
T 1wia_A 3 SGSSGINVRLKFL-NDTEELAVARPEDTVGTLKSK 36 (95)
T ss_dssp CCCCSEEEEEEET-TTEEEEEEECSSSBHHHHHHH
T ss_pred CCCCeEEEEEEeC-CCCEEEEEECCCCcHHHHHHH
Confidence 4456688888763 687788999999999876554
No 49
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=43.71 E-value=28 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
.++..|.|+.. .|....+.+.+.+||.+.
T Consensus 19 ~~mIqI~Vk~~-~Gkk~~v~v~p~DTI~~L 47 (93)
T 3plu_A 19 SHMIEVVVNDR-LGKKVRVKCLGEDSVGDF 47 (93)
T ss_dssp -CEEEEEEECT-TSCEEEEEEETTSBHHHH
T ss_pred CceEEEEEECC-CCCEEEEEECCcCHHHHH
Confidence 45789999874 788899999999999864
No 50
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=43.21 E-value=9.5 Score=29.83 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=19.2
Q ss_pred HHHCCCCC------CCCCCceeccCceEEEe
Q 031115 90 AESQNITL------PFACRHGCCTSCAVRIK 114 (165)
Q Consensus 90 a~~~GI~i------p~~C~~G~CGtC~V~v~ 114 (165)
+.+.|++. ...||.|.||.|.+...
T Consensus 209 l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 209 KYDQLERLYISMESRMACGIGACYACVEHDK 239 (262)
T ss_dssp HTTTCSSEEEECCCCCSSSSSSSCTTEEEET
T ss_pred HHhCCCCEEEEecccccCcccccccCCcccc
Confidence 55567652 37899999999999864
No 51
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=42.07 E-value=9.2 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=19.6
Q ss_pred hHHHHHHHCCCC--C---CCCCCceeccCce
Q 031115 85 YILHTAESQNIT--L---PFACRHGCCTSCA 110 (165)
Q Consensus 85 tLLeaa~~~GI~--i---p~~C~~G~CGtC~ 110 (165)
..|+.+++.|.- + +..|..|.|++|.
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~ 65 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSCP 65 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSCS
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCCC
Confidence 567888888863 2 4789888899984
No 52
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=41.17 E-value=57 Score=21.12 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHCCCCCC
Q 031115 75 VHEFLVPEDQYILHTAESQNITLP 98 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ip 98 (165)
..++++++|.|+.|.+.+.|++..
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSS
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcc
Confidence 467899999999999999998764
No 53
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=39.52 E-value=48 Score=23.15 Aligned_cols=45 Identities=13% Similarity=-0.083 Sum_probs=29.5
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEe
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (165)
.|.+.- .+++.-.++|.+|.||-||+.++= .. |+-.+-.|.|...
T Consensus 19 ~irvhL-PNqQrT~V~VrpG~tlrdAL~KaL-k~----R~L~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFL-PNKQRTVVPARCGVTVRDSLKKAL-MM----RGLIPECCAVYRI 63 (95)
T ss_dssp EEEEEE-TTTEEEEEECCTTCBHHHHHHHHH-HH----HTCCGGGEEEEEE
T ss_pred EEEEEC-CCCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHcEEEEc
Confidence 344433 256667899999999999876541 00 1236778888865
No 54
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.84 E-value=69 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
++++|+|.. .|..+.+++++..|+.+.
T Consensus 16 ~~~~i~Vk~--~g~~~~i~v~~~~TV~~L 42 (95)
T 1v86_A 16 ELVDLKIIW--NKTKHDVKVPLDSTGSEL 42 (95)
T ss_dssp CCEEEEEEE--TTEEEEEEECTTSBHHHH
T ss_pred ceEEEEEEE--CCEEEEEEECCCCcHHHH
Confidence 457788875 477788999999998764
No 55
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=37.71 E-value=19 Score=20.42 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=18.9
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 031115 76 HEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~i 97 (165)
..+.|.+|+||-..+.+.|+.+
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEEcCCCcHHHHHHHHCcCH
Confidence 4578999999999999998764
No 56
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.28 E-value=71 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
++++|+|... +|....+++++..|+.+.
T Consensus 6 ~~m~i~Vk~~-~g~~~~~~v~~~~tV~~l 33 (87)
T 1wh3_A 6 SGIQVFVKNP-DGGSYAYAINPNSFILGL 33 (87)
T ss_dssp SSEEEEEEET-TTEEEEEEECSSSBHHHH
T ss_pred CCEEEEEEcC-CCCEEEEEeCCCChHHHH
Confidence 4578888763 587788999999998764
No 57
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=35.60 E-value=16 Score=24.26 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=18.9
Q ss_pred hHHHHHHHCCCC-----CCCCCCceeccCce
Q 031115 85 YILHTAESQNIT-----LPFACRHGCCTSCA 110 (165)
Q Consensus 85 tLLeaa~~~GI~-----ip~~C~~G~CGtC~ 110 (165)
.-|+.+++.|.- -...|..|.|++|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 457778888853 24678778899994
No 58
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=35.41 E-value=19 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=23.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
+.|.+-.........+++++|.|+.++++..|+.
T Consensus 15 v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 15 IEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 4444444222233467889999999999999984
No 59
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=35.07 E-value=36 Score=24.33 Aligned_cols=46 Identities=13% Similarity=-0.070 Sum_probs=30.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEec
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~ 115 (165)
.|.+... +++.-.++|.+|.||-||+.++= .. |+-.+-.|.|....
T Consensus 20 ~ir~hLP-NqQrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~~ 65 (107)
T 1rrb_A 20 TIRVFLP-NKQRTVVNVRNGMSLHDCLMKAL-KV----RGLQPECCAVFRLL 65 (107)
T ss_dssp EEEEECT-TTCCEEEECCTTCBHHHHHHHHH-HH----HTCCTTTEEEEECC
T ss_pred eEEEECC-CCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHceeEEcc
Confidence 4555442 45557899999999998876541 00 12257788888763
No 60
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=33.90 E-value=60 Score=20.24 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNIT 96 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLea----a~~~GI~ 96 (165)
|..++|+|... +|....+++.+.+|+.+. +.+.|++
T Consensus 1 m~~m~i~vk~~-~g~~~~~~v~~~~tv~~lk~~i~~~~gi~ 40 (79)
T 2uyz_B 1 MEYIKLKVIGQ-DSSEIHFKVKMTTHLKKLKESYCQRQGVP 40 (79)
T ss_dssp CCEEEEEEECT-TCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 44578888863 688889999999998763 2345554
No 61
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.65 E-value=61 Score=21.75 Aligned_cols=39 Identities=13% Similarity=-0.095 Sum_probs=27.4
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEec
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~ 115 (165)
+++.-.++|.+|.||-||+.++= .. |+-.+-.|.|....
T Consensus 10 n~QrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~V~~~~ 48 (77)
T 1c1y_B 10 NKQRTVVNVRNGMSLHDCLMKAL-KV----RGLQPECCAVFRLL 48 (77)
T ss_dssp TTEEEEEECCTTCBHHHHHHHHH-HT----TTCCGGGEEEEEEE
T ss_pred CCceEEEEecCCcCHHHHHHHHH-HH----cCCCHHHeEEEEec
Confidence 56667899999999999876641 00 23367788888663
No 62
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=30.95 E-value=97 Score=19.97 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITL 97 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLea----a~~~GI~i 97 (165)
...++|+|... +|....+++.+.+|+.+. ....|++.
T Consensus 15 ~~~m~i~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 15 RGSMQIFVNTL-TGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCSEEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCeEEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 34578888864 688889999999999863 33456554
No 63
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=30.70 E-value=69 Score=22.38 Aligned_cols=47 Identities=13% Similarity=-0.065 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEec
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKS 115 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~ 115 (165)
-.|.+.-. +++.-.++|.+|.||-+|+.++= .. |+-.+-.|.|....
T Consensus 14 ~~irvhLP-NqQrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 14 PIVRVFLP-NKQRTVVPARCGVTVRDSLKKAL-MM----RGLIPECCAVYRIQ 60 (96)
T ss_dssp CEEEEEET-TTEEEEEECCTTCBHHHHHHHHH-HT----TTCCGGGEEEEECC
T ss_pred CEEEEECC-CCceEEEEecCCcCHHHHHHHHH-HH----cCCChHHeEEEEcc
Confidence 34555432 56667899999999998876641 00 23367788888763
No 64
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.75 E-value=62 Score=22.17 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=29.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEe
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (165)
.|.++-. +++.-.++|.+|.||-||+.++= .. |+-.+-.|.|...
T Consensus 9 ~irvhLP-n~QrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLP-NKQRTVVTVRDGMSVYDSLDKAL-KV----RGLNQDCCVVYRL 53 (86)
T ss_dssp EEEEECS-SSCEEEEECCSSCBSHHHHHHHH-HT----TTCCSSSEEEEEE
T ss_pred eEEEECC-CCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHeEEEEc
Confidence 4445442 56667899999999988876541 00 1235777888765
No 65
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=29.69 E-value=36 Score=21.10 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 031115 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 72 ~G~~~~~~v~~getLLeaa~~~GI~i 97 (165)
+| ..++++.|.|+++.+.+.+..+
T Consensus 9 ~g--~~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 9 KG--EIKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp TC--CEEEECTTCBHHHHHHHHCSHH
T ss_pred CC--CEEEcCCCCcHHHHHHHHhhcc
Confidence 57 4678899999999998875433
No 66
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=29.05 E-value=85 Score=19.47 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
.+.|.|... +|....+++.+.+|+.+.
T Consensus 4 ~m~i~Vk~~-~g~~~~~~v~~~~tV~~l 30 (79)
T 3phx_B 4 PLSILVRNN-KGRSSTYEVRLTQTVAHL 30 (79)
T ss_dssp CEEEEEECT-TSCEEEEEECTTSBHHHH
T ss_pred CEEEEEEeC-CCCEEEEEECCcChHHHH
Confidence 467888763 688889999999998754
No 67
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.61 E-value=1.1e+02 Score=18.89 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=24.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCC
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNIT 96 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa----~~~GI~ 96 (165)
.+++|+|... +|....+++++..|+.+.- ...|++
T Consensus 6 ~~m~i~vk~~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 6 SGMQLTVKAL-QGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSEEEEEEET-TSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3467777753 5777889999999987643 345554
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=28.25 E-value=58 Score=21.34 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCcEEEE-EeCCCChHHHH----HHHCCCC
Q 031115 62 THKVTVHDRFRGVVHEF-LVPEDQYILHT----AESQNIT 96 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~-~v~~getLLea----a~~~GI~ 96 (165)
+++|+|.. .|..+.+ ++++.+|+.+. ....||+
T Consensus 7 ~m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 7 GLPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp SCCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred eEEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 46677776 4767778 88999998764 3356664
No 69
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.23 E-value=51 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcEEEEEeC--CCChHHHHHHHCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVP--EDQYILHTAESQNIT 96 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~--~getLLeaa~~~GI~ 96 (165)
+|+| +| ..++++ ++.||.+.+...|++
T Consensus 2 ~I~v----NG--e~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 2 NLTV----NG--KPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp EEEE----TT--EEEECSSCSCEEHHHHHHHHTCS
T ss_pred EEEE----CC--EEEEcCCCCCCcHHHHHHHcCCC
Confidence 4666 47 577888 899999999999987
No 70
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.12 E-value=57 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcEEEEEeCCC-ChHHHHHHHCCCC
Q 031115 63 HKVTVHDRFRGVVHEFLVPED-QYILHTAESQNIT 96 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~g-etLLeaa~~~GI~ 96 (165)
.+|+| +| +.++++++ .||.+.+...++.
T Consensus 21 M~I~v----NG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 21 HMLQL----NG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp -CEEE----TT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred eEEEE----CC--EEEECCCCCCcHHHHHHHhCCC
Confidence 46777 47 67888998 9999999999865
No 71
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=26.73 E-value=1.1e+02 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
+++|+|... +|....+++.+..|+.+.
T Consensus 5 ~m~i~vk~~-~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKTL-QQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEET-TSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEEC-CCCEEEEEECCCCCHHHH
Confidence 467888763 577789999999998764
No 72
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=25.09 E-value=1e+02 Score=19.83 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
.+++|+|... +|....+++++..|+.+.
T Consensus 3 ~~m~I~Vk~~-~g~~~~~~v~~~~TV~~L 30 (88)
T 2hj8_A 3 EPLSILVRNN-KGRSSTYEVRLTQTVAHL 30 (88)
T ss_dssp CEEEEEEEET-TSCEEEEEEESSSBHHHH
T ss_pred ccEEEEEECC-CCCEEEEEECCCCcHHHH
Confidence 3577888764 587788999999998764
No 73
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=25.03 E-value=61 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=28.2
Q ss_pred EEEEEeCCCChHHHHHHHCCCCCCCCCCceeccCceEEEecCccCC
Q 031115 75 VHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120 (165)
Q Consensus 75 ~~~~~v~~getLLeaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~ 120 (165)
+.++++.++.|+||++..-. ..+||. +|.++| .|....
T Consensus 44 ~y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~I-NG~~~l 81 (514)
T 3kwl_A 44 SYFLEYQEDQYLLDLLKQLK---GVSYSE----NIALKI-NQIAVF 81 (514)
T ss_dssp EEEEECCTTCBHHHHHTTST---TCCCCS----SCCEEE-TTEEEC
T ss_pred EEEEeCCCCCcHHHHHHHhh---hCeeec----cceEEE-CCEehh
Confidence 34567789999999998866 666776 788887 565543
No 74
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.96 E-value=1e+02 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
+++|+|... +|....+++++.+|+.+.
T Consensus 3 ~m~i~vk~~-~g~~~~~~v~~~~tV~~l 29 (85)
T 3mtn_B 3 HMQIFVKTL-TGKTITLEVEPSDTIENV 29 (85)
T ss_dssp CEEEEEECT-TSCEEEEEECTTCBHHHH
T ss_pred eEEEEEEcC-CCCEEEEEECCCCCHHHH
Confidence 367888764 688889999999999764
No 75
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=24.79 E-value=1e+02 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
+++|+|... +|....+++.+.+|+.+.
T Consensus 5 ~m~i~Vk~~-~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 5 SLEVLVKTL-DSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp EEEEEEEET-TCCEEEEEEETTCBHHHH
T ss_pred EEEEEEEcC-CCCEEEEEECCCCCHHHH
Confidence 467888774 688889999999998864
No 76
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=24.73 E-value=1.3e+02 Score=18.77 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCCC
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITL 97 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa----~~~GI~i 97 (165)
..+.|+|... +|....+++.+.+|+.+.- ...|++.
T Consensus 11 ~~m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 11 GSMLIKVKTL-TGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CCEEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CcEEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 4578888863 6888899999999987642 3446553
No 77
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.43 E-value=31 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.3
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 031115 76 HEFLVPEDQYILHTAESQNITL 97 (165)
Q Consensus 76 ~~~~v~~getLLeaa~~~GI~i 97 (165)
..+.|.+|+||...|.+.|+.+
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCH
T ss_pred EEEEECCCCcHHHHHHHHCcCH
Confidence 4678999999999999999865
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.40 E-value=1.2e+02 Score=19.73 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=20.0
Q ss_pred CCceEEEEEeCCCCc--EEEEEeCCCChHHHH
Q 031115 60 IPTHKVTVHDRFRGV--VHEFLVPEDQYILHT 89 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~--~~~~~v~~getLLea 89 (165)
|.+++|+|... .|. ...+++++.+|+.+.
T Consensus 5 ~~~m~i~Vk~~-~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSP-NQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECS-SSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeC-CCCeEEEEEecCCCCcHHHH
Confidence 45578888764 454 456677799998764
No 79
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=23.39 E-value=93 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 031115 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (165)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ 96 (165)
+|+| +| ..+++ ++.||.+.+...|++
T Consensus 2 ~I~v----NG--~~~e~-~~~Tl~~LL~~l~~~ 27 (73)
T 2kl0_A 2 LVTI----NG--EQREV-QSASVAALMTELDCT 27 (73)
T ss_dssp CEEE----TT--EEECC-CCSBHHHHHHHTTCC
T ss_pred EEEE----CC--EEEEc-CCCcHHHHHHHcCCC
Confidence 4555 47 56777 889999999999986
No 80
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.04 E-value=1.6e+02 Score=20.36 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILH 88 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLe 88 (165)
.++|+|... +|....+++++..|+.+
T Consensus 7 ~M~I~Vk~l-~g~~~~v~V~~~~TV~d 32 (105)
T 1v2y_A 7 GMTVRVCKM-DGEVMPVVVVQNATVLD 32 (105)
T ss_dssp SEEEEEECS-SSCEEEEEECTTCBHHH
T ss_pred cEEEEEEec-CCCEEEEEECCCChHHH
Confidence 468888763 78889999999999865
No 81
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=28.73 E-value=18 Score=21.45 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=14.1
Q ss_pred HCCCCCCCCCCceeccCc
Q 031115 92 SQNITLPFACRHGCCTSC 109 (165)
Q Consensus 92 ~~GI~ip~~C~~G~CGtC 109 (165)
++|..+.+.|.+ .||.|
T Consensus 24 ~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 24 RNGVKLRANCKK-TCGLC 40 (40)
Confidence 678889999986 68877
No 82
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.10 E-value=1.5e+02 Score=19.09 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCC
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNIT 96 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLea----a~~~GI~ 96 (165)
..+++|+|... |....+++.+..|+.+. ....|++
T Consensus 15 ~~~m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~gip 53 (96)
T 1wx8_A 15 SRIIRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCN 53 (96)
T ss_dssp SCEEEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred CCcEEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 34678888863 77889999999998763 3345554
No 83
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.03 E-value=1.9e+02 Score=19.95 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=30.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCC
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC 101 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLLeaa~~~GI~ip~~C 101 (165)
....|+|.. .||..+++.|.++.|..|+++..-......+
T Consensus 8 ~k~vvkvf~-~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 8 RPHVVKVYS-EDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp SCEEEEEEE-TTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CCEEEEEEe-cCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 346778877 4899999999999999999887655443333
No 84
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.66 E-value=1.5e+02 Score=19.68 Aligned_cols=36 Identities=11% Similarity=-0.092 Sum_probs=25.7
Q ss_pred CceEEEEEeCCCCcEE-EEEeCCCChHHHH----HHHCCCCCC
Q 031115 61 PTHKVTVHDRFRGVVH-EFLVPEDQYILHT----AESQNITLP 98 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~-~~~v~~getLLea----a~~~GI~ip 98 (165)
.+++|+|.. .|+.+ .+++++.+|+.+. ....||+..
T Consensus 6 ~~m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 6 SGYSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp CEEEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred cEEEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 457888876 47778 5999999998764 335676543
No 85
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=20.81 E-value=1.7e+02 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAE 91 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLeaa~ 91 (165)
.+.|+|... .|....+++++.+|+.+.=+
T Consensus 17 ~m~I~vktl-~G~~~~lev~~s~TV~~lK~ 45 (125)
T 2gow_A 17 MINLRLILV-SGKTKEFLFSPNDSASDIAK 45 (125)
T ss_dssp CEEEEEECT-TSCEEEEEECTTSBHHHHHH
T ss_pred eEEEEEEeC-CCCEEEEEeCCccHHHHHHH
Confidence 478888763 68889999999999876533
No 86
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.71 E-value=1.7e+02 Score=18.71 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCcEEEEEeCCC-----ChHHHH
Q 031115 61 PTHKVTVHDRFRGVVHEFLVPED-----QYILHT 89 (165)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~g-----etLLea 89 (165)
.+++|+|.. .|..+.+++++. .|+.+.
T Consensus 6 ~~~~v~Vk~--~~~~~~i~v~~~~~~~~~TV~~L 37 (92)
T 1wxv_A 6 SGLTVTVTH--SNEKHDLHVTSQQGSSEPVVQDL 37 (92)
T ss_dssp SSEEEEEEC--SSSEEEEEECCCSSSSSCBHHHH
T ss_pred CeEEEEEEE--CCEEEEEEECCCcCcccCcHHHH
Confidence 457888886 366788999985 777653
No 87
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.47 E-value=2.2e+02 Score=19.80 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
+.+++|+|... |....+++....||.+.
T Consensus 30 ~~~m~I~Vk~~--g~~~~l~v~~~~TV~~L 57 (125)
T 1j8c_A 30 PKIIKVTVKTP--KEKEEFAVPENSSVQQF 57 (125)
T ss_dssp CCCEEEEEECS--SCEEEEEECTTCCHHHH
T ss_pred CCcEEEEEEeC--CeEEEEEECCCCcHHHH
Confidence 34678888863 77788999999998764
No 88
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=20.26 E-value=82 Score=27.36 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCC
Q 031115 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQN 94 (165)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLLeaa~~~G 94 (165)
++++|.....-..+.+.+++|.+++++++++-
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~ 350 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQ 350 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHH
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHH
Confidence 44445432233457899999999999998764
No 89
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=20.10 E-value=1.4e+02 Score=18.83 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 031115 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (165)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLLea 89 (165)
.++|+|... +|....+++.+.+|+.+.
T Consensus 17 ~m~i~Vk~~-~g~~~~~~v~~~~tV~~l 43 (88)
T 4eew_A 17 SLEVLVKTL-DSQTRTFIVGAQMNVKEF 43 (88)
T ss_dssp EEEEEEEET-TSCEEEEEEETTCBHHHH
T ss_pred eEEEEEEcC-CCCEEEEEECCCCCHHHH
Confidence 467888874 687888999999999863
Done!