Query 031117
Match_columns 165
No_of_seqs 210 out of 1111
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02593 adrenodoxin-like ferr 99.7 8.4E-18 1.8E-22 128.0 8.7 78 58-150 1-104 (117)
2 PTZ00490 Ferredoxin superfamil 99.7 2.2E-17 4.7E-22 130.6 9.7 80 56-150 34-139 (143)
3 TIGR02007 fdx_isc ferredoxin, 99.7 1.7E-16 3.8E-21 119.0 9.8 74 62-150 6-103 (110)
4 KOG3309 Ferredoxin [Energy pro 99.6 1.8E-15 4E-20 121.2 8.7 109 24-148 11-144 (159)
5 CHL00134 petF ferredoxin; Vali 99.6 2.9E-15 6.2E-20 110.6 8.9 79 55-151 1-97 (99)
6 TIGR02008 fdx_plant ferredoxin 99.6 3.7E-15 8.1E-20 109.3 8.3 62 76-150 15-94 (97)
7 PTZ00038 ferredoxin; Provision 99.6 1.3E-14 2.8E-19 119.7 8.9 78 57-154 95-190 (191)
8 PLN03136 Ferredoxin; Provision 99.6 1.2E-14 2.7E-19 115.4 8.4 79 54-152 51-147 (148)
9 PRK10713 2Fe-2S ferredoxin Yfa 99.5 3.2E-14 7E-19 102.0 7.9 58 76-146 11-84 (84)
10 TIGR01941 nqrF NADH:ubiquinone 99.5 8.2E-14 1.8E-18 123.3 9.5 74 55-148 29-122 (405)
11 COG0633 Fdx Ferredoxin [Energy 99.4 4.3E-13 9.4E-18 99.7 8.1 57 77-146 16-95 (102)
12 PRK05464 Na(+)-translocating N 99.4 5.3E-13 1.1E-17 118.3 9.6 73 56-148 34-126 (409)
13 COG2871 NqrF Na+-transporting 99.4 1.8E-13 3.9E-18 120.6 5.8 73 57-149 36-128 (410)
14 cd00207 fer2 2Fe-2S iron-sulfu 99.4 6.6E-13 1.4E-17 92.1 6.9 57 76-145 10-84 (84)
15 PRK05713 hypothetical protein; 99.4 1E-12 2.2E-17 112.3 7.7 59 76-147 9-85 (312)
16 COG3894 Uncharacterized metal- 99.4 5.9E-13 1.3E-17 123.2 5.5 64 77-153 12-93 (614)
17 PRK07609 CDP-6-deoxy-delta-3,4 99.3 3.5E-12 7.6E-17 109.4 8.2 61 76-149 12-92 (339)
18 PRK11872 antC anthranilate dio 99.3 5.7E-12 1.2E-16 109.1 8.7 61 76-149 15-95 (340)
19 PF13085 Fer2_3: 2Fe-2S iron-s 99.2 8.8E-12 1.9E-16 94.8 4.7 91 57-149 1-94 (110)
20 PF00111 Fer2: 2Fe-2S iron-sul 99.2 1.3E-11 2.8E-16 85.3 4.6 51 76-134 8-78 (78)
21 PRK10684 HCP oxidoreductase, N 99.2 3.5E-11 7.6E-16 103.5 8.2 67 56-144 247-331 (332)
22 PLN00129 succinate dehydrogena 99.2 4.5E-11 9.8E-16 103.3 6.2 90 57-149 45-135 (276)
23 TIGR02160 PA_CoA_Oxy5 phenylac 99.1 3.2E-10 6.9E-15 97.8 8.4 56 78-145 277-350 (352)
24 PRK13552 frdB fumarate reducta 99.1 1.4E-10 3.1E-15 97.7 5.6 90 57-149 6-96 (239)
25 COG0479 FrdB Succinate dehydro 99.0 3.3E-10 7.3E-15 96.1 5.2 89 57-149 4-92 (234)
26 PRK08640 sdhB succinate dehydr 98.9 1.1E-09 2.3E-14 93.0 5.2 88 57-149 7-101 (249)
27 PRK12575 succinate dehydrogena 98.9 1.6E-09 3.5E-14 91.4 5.5 88 57-149 6-94 (235)
28 PRK12385 fumarate reductase ir 98.9 8.5E-10 1.8E-14 93.2 3.7 89 57-149 8-96 (244)
29 PRK06259 succinate dehydrogena 98.9 3.1E-09 6.7E-14 96.0 7.1 84 57-148 5-88 (486)
30 PRK07569 bidirectional hydroge 98.9 7.7E-09 1.7E-13 86.2 8.4 72 55-149 1-79 (234)
31 PRK12386 fumarate reductase ir 98.9 3.7E-09 8.1E-14 90.1 6.0 76 71-148 17-92 (251)
32 PRK12577 succinate dehydrogena 98.8 8.1E-09 1.7E-13 90.4 7.7 89 57-149 4-101 (329)
33 PF13510 Fer2_4: 2Fe-2S iron-s 98.8 6E-09 1.3E-13 74.6 5.2 72 57-146 3-79 (82)
34 PRK05950 sdhB succinate dehydr 98.8 1.3E-08 2.7E-13 84.8 6.8 90 57-149 1-91 (232)
35 PRK07570 succinate dehydrogena 98.8 7E-09 1.5E-13 88.3 4.6 89 57-148 4-103 (250)
36 PRK12576 succinate dehydrogena 98.7 3.1E-08 6.7E-13 85.3 7.6 89 57-149 10-100 (279)
37 TIGR00384 dhsB succinate dehyd 98.7 1.5E-08 3.2E-13 83.6 3.5 77 70-149 11-87 (220)
38 PRK08166 NADH dehydrogenase su 98.2 2.5E-06 5.4E-11 82.4 7.6 69 76-157 9-89 (847)
39 PRK12814 putative NADPH-depend 98.1 5.7E-06 1.2E-10 77.9 6.8 72 55-149 1-79 (652)
40 PTZ00305 NADH:ubiquinone oxido 98.1 1.5E-05 3.2E-10 70.1 8.4 73 53-148 64-144 (297)
41 PRK07860 NADH dehydrogenase su 97.9 5.8E-05 1.3E-09 73.0 8.5 60 76-147 12-78 (797)
42 PRK08493 NADH dehydrogenase su 97.8 5E-05 1.1E-09 74.3 8.0 66 76-148 9-74 (819)
43 PRK11433 aldehyde oxidoreducta 97.7 0.00023 5E-09 60.2 8.4 78 76-159 61-139 (217)
44 TIGR01973 NuoG NADH-quinone ox 97.6 0.00014 3.1E-09 67.8 7.3 61 76-148 6-74 (603)
45 PRK09130 NADH dehydrogenase su 97.6 0.00019 4E-09 68.7 7.8 61 76-148 9-77 (687)
46 PRK09129 NADH dehydrogenase su 97.6 0.00017 3.7E-09 69.1 7.3 61 76-148 9-76 (776)
47 KOG3049 Succinate dehydrogenas 97.5 0.00046 9.9E-09 59.3 8.3 89 56-148 47-138 (288)
48 PRK09908 xanthine dehydrogenas 97.4 0.00042 9.2E-09 56.1 6.6 76 76-159 18-95 (159)
49 TIGR03193 4hydroxCoAred 4-hydr 97.3 0.0006 1.3E-08 54.6 6.4 77 76-159 11-89 (148)
50 COG1034 NuoG NADH dehydrogenas 97.1 0.0016 3.5E-08 63.0 7.3 66 76-148 9-76 (693)
51 TIGR03198 pucE xanthine dehydr 97.1 0.0015 3.2E-08 52.4 5.9 76 76-158 13-89 (151)
52 COG3383 Uncharacterized anaero 96.7 0.0056 1.2E-07 60.3 7.6 60 76-147 13-77 (978)
53 COG2080 CoxS Aerobic-type carb 96.5 0.0059 1.3E-07 49.5 5.6 66 76-148 13-79 (156)
54 PRK09800 putative hypoxanthine 96.3 0.0058 1.2E-07 60.9 5.5 77 76-158 12-89 (956)
55 PRK08345 cytochrome-c3 hydroge 96.3 0.003 6.5E-08 53.8 3.0 45 87-132 227-274 (289)
56 cd06219 DHOD_e_trans_like1 FAD 96.2 0.0059 1.3E-07 50.5 4.2 45 87-132 195-239 (248)
57 PRK06222 ferredoxin-NADP(+) re 96.1 0.007 1.5E-07 51.3 4.2 44 88-132 197-240 (281)
58 PRK00054 dihydroorotate dehydr 96.1 0.0047 1E-07 51.1 2.8 44 87-131 196-239 (250)
59 cd06192 DHOD_e_trans_like FAD/ 95.4 0.018 3.9E-07 47.2 3.8 45 87-132 193-239 (243)
60 TIGR03313 Se_sel_red_Mo probab 95.3 0.018 3.9E-07 57.4 4.0 77 76-158 8-85 (951)
61 TIGR03311 Se_dep_Molyb_1 selen 95.2 0.038 8.2E-07 54.4 5.7 65 77-149 9-75 (848)
62 cd06218 DHOD_e_trans FAD/NAD b 95.1 0.022 4.7E-07 47.2 3.5 44 87-131 195-241 (246)
63 TIGR01372 soxA sarcosine oxida 94.9 0.093 2E-06 52.2 7.6 76 56-149 11-96 (985)
64 TIGR02963 xanthine_xdhA xanthi 94.7 0.05 1.1E-06 50.2 5.0 76 76-159 10-99 (467)
65 PRK05802 hypothetical protein; 94.7 0.039 8.4E-07 48.2 4.1 45 89-134 271-318 (320)
66 PRK12778 putative bifunctional 94.4 0.072 1.6E-06 51.1 5.5 45 88-133 197-241 (752)
67 cd06220 DHOD_e_trans_like2 FAD 93.7 0.071 1.5E-06 43.5 3.5 42 87-131 182-223 (233)
68 TIGR02911 sulfite_red_B sulfit 93.4 0.047 1E-06 45.8 1.9 39 88-131 206-247 (261)
69 PF10418 DHODB_Fe-S_bind: Iron 92.5 0.077 1.7E-06 33.7 1.6 27 104-131 2-30 (40)
70 cd06221 sulfite_reductase_like 92.4 0.082 1.8E-06 43.9 2.1 39 87-130 205-246 (253)
71 PRK12775 putative trifunctiona 92.2 0.17 3.8E-06 50.7 4.3 44 89-133 198-241 (1006)
72 TIGR02969 mam_aldehyde_ox alde 91.6 0.24 5.2E-06 51.2 4.7 75 77-159 14-102 (1330)
73 PRK08221 anaerobic sulfite red 90.7 0.12 2.5E-06 43.5 1.2 32 88-120 208-242 (263)
74 PLN00192 aldehyde oxidase 88.3 0.84 1.8E-05 47.4 5.5 76 76-159 15-105 (1344)
75 PRK12779 putative bifunctional 86.4 1.3 2.8E-05 44.4 5.4 45 88-133 863-911 (944)
76 KOG2282 NADH-ubiquinone oxidor 86.3 1.8 3.9E-05 41.7 6.0 61 56-134 31-98 (708)
77 COG4630 XdhA Xanthine dehydrog 62.5 11 0.00024 35.3 4.1 73 79-158 22-106 (493)
78 PLN02906 xanthine dehydrogenas 62.2 6.6 0.00014 40.9 3.0 69 84-159 2-82 (1319)
79 PRK01777 hypothetical protein; 42.6 50 0.0011 24.4 4.2 25 75-100 18-42 (95)
80 cd01760 RBD Ubiquitin-like dom 40.4 27 0.00058 24.6 2.4 29 69-100 7-39 (72)
81 PRK06567 putative bifunctional 38.4 14 0.0003 38.0 0.8 39 93-131 959-999 (1028)
82 cd01817 RGS12_RBD Ubiquitin do 32.3 59 0.0013 23.4 3.0 31 68-100 6-39 (73)
83 PF02824 TGS: TGS domain; Int 32.1 84 0.0018 20.8 3.7 27 69-100 6-32 (60)
84 smart00455 RBD Raf-like Ras-bi 30.5 56 0.0012 22.6 2.7 30 69-100 7-39 (70)
85 PF02196 RBD: Raf-like Ras-bin 26.7 1E+02 0.0022 21.3 3.4 30 69-100 8-40 (71)
86 PRK08364 sulfur carrier protei 25.2 1.3E+02 0.0029 20.3 3.8 36 55-98 2-37 (70)
87 PF03658 Ub-RnfH: RnfH family 24.4 75 0.0016 23.2 2.5 23 75-98 15-37 (84)
88 PRK05659 sulfur carrier protei 23.9 1.2E+02 0.0025 19.9 3.2 23 77-100 9-31 (66)
89 PRK07440 hypothetical protein; 23.0 1.6E+02 0.0036 20.1 3.9 31 57-99 4-34 (70)
90 PRK10509 bacterioferritin-asso 21.8 34 0.00073 23.4 0.2 32 87-120 14-45 (64)
91 COG2440 FixX Ferredoxin-like p 20.6 41 0.0009 25.6 0.5 9 112-120 68-76 (99)
No 1
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.74 E-value=8.4e-18 Score=128.00 Aligned_cols=78 Identities=35% Similarity=0.526 Sum_probs=65.0
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE-----------------
Q 031117 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE----------------- 120 (165)
Q Consensus 58 i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~----------------- 120 (165)
|+|+|++ +||. .+++++..|++|| ++++++|+++++ .|||.|.||||+|+
T Consensus 1 ~~V~fi~----~~G~--~~~v~~~~G~tLl-~a~~~~gi~i~~------~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVD----KDGE--ERTVKAPVGMSLL-EAAHENDIELEG------ACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEc----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCc------cCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 5788887 5665 3789999999999 999999999999 79999999999998
Q ss_pred ---------cCCCeEEeeeceeccccCCcceEEEEcCch
Q 031117 121 ---------KPESWRLACQTIVGNKENSGKCRIKYLKVE 150 (165)
Q Consensus 121 ---------~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~ 150 (165)
..++||||||+.+. .+ .++++|++++..
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~-~~-~~~~~v~ip~~~ 104 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAK-PE-LDGMRLALPAAT 104 (117)
T ss_pred HHHHhcccCCCCCeEecceeEee-cC-CCCEEEEcCchh
Confidence 24689999999996 22 268999877664
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.73 E-value=2.2e-17 Score=130.55 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=67.8
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEE--------------
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~-------------- 120 (165)
.+|+|+|++ +||+. ++++++.|++|| ++++++ ++++++ .|||.|+||||+|+
T Consensus 34 g~v~I~~~~----~dG~~--~~v~~~~G~sLL-eal~~~~~i~i~~------~CGG~g~CgtC~V~V~~g~~~~l~~~~~ 100 (143)
T PTZ00490 34 GKVKVCVKK----RDGTH--CDVEVPVGMSLM-HALRDVAKLDVEG------TCNGCMQCATCHVYLSAASFKKLGGPSE 100 (143)
T ss_pred CcEEEEEEc----CCCCE--EEEEECCCccHH-HHHHHcCCCCccc------cCCCCCEeCCCEEEECCCccccCCCCCh
Confidence 579999987 67864 799999999999 999995 789999 79999999999999
Q ss_pred -----------cCCCeEEeeeceeccccCCcceEEEEcCch
Q 031117 121 -----------KPESWRLACQTIVGNKENSGKCRIKYLKVE 150 (165)
Q Consensus 121 -----------~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~ 150 (165)
+.++||||||+.+. ++ .++++|+++++.
T Consensus 101 ~E~~~L~~~~~~~~gsRLaCQi~v~-~~-ldgl~V~vp~~~ 139 (143)
T PTZ00490 101 EEEDVLAKALDVKETSRLACQVDLT-PE-MDGLEVELPSYV 139 (143)
T ss_pred HHHHHhhccccCCCCcEEeeeEEEe-cC-CCCEEEEeCccc
Confidence 35789999999996 22 267899987764
No 3
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.69 E-value=1.7e-16 Score=118.96 Aligned_cols=74 Identities=27% Similarity=0.439 Sum_probs=60.7
Q ss_pred EecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE---------------------
Q 031117 62 FIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------------- 120 (165)
Q Consensus 62 f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------------- 120 (165)
+.+....++| +.+++.+|++|| ++|+++|+++++ .|+|.|.||||+|+
T Consensus 6 ~~~~~~~p~~----~~~~~~~g~tLL-~a~~~~gi~i~~------~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~ 74 (110)
T TIGR02007 6 LPHEDLCPEG----AVVEAKPGETIL-DVALDNGIEIEH------ACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDK 74 (110)
T ss_pred EeCcccCCCC----eEEEECCCChHH-HHHHHcCCCccc------cCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhh
Confidence 3343444555 589999999999 999999999999 79999999999888
Q ss_pred ---cCCCeEEeeeceeccccCCcceEEEEcCch
Q 031117 121 ---KPESWRLACQTIVGNKENSGKCRIKYLKVE 150 (165)
Q Consensus 121 ---~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~ 150 (165)
..++||||||+.+. .+|++|+++...
T Consensus 75 ~~~~~~~~RLaCq~~~~----~~dl~v~~~~~~ 103 (110)
T TIGR02007 75 AWGLEPDSRLSCQAVVA----DEDLVVEIPKYT 103 (110)
T ss_pred ccCCCCCcEEeeeEEEc----CCCEEEEECchh
Confidence 13569999999985 369999987644
No 4
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.62 E-value=1.8e-15 Score=121.23 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=82.9
Q ss_pred ccccccccCCCCCceeEEeecCCCCCCCCCCCCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCc
Q 031117 24 SSFKSKLSSPRRPKFVSFAVNSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYG 103 (165)
Q Consensus 24 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~ 103 (165)
..+|-+.+.+++.|....+.... .+.++.+...|+|+|++ +||+ +..++...|+||| +++.++||++++
T Consensus 11 ~~~~~a~~~~~~~f~~~~t~~~~-~~~~~~~~e~i~Itfv~----~dG~--~~~i~g~vGdtlL-d~ah~n~idleG--- 79 (159)
T KOG3309|consen 11 QISRLAPFTRNHIFRTSSTSEFS-PSKGPRKVEDIKITFVD----PDGE--EIKIKGKVGDTLL-DAAHENNLDLEG--- 79 (159)
T ss_pred chhhccccccceeeccCcccccc-cccCCCCCceEEEEEEC----CCCC--EEEeeeecchHHH-HHHHHcCCCccc---
Confidence 34455566677766664332211 22334445569999998 7886 4788999999999 999999999999
Q ss_pred ccccCCCceeecccEEE-------------------------cCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 104 KVMNCGGGGSCGTCIVE-------------------------KPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 104 ~~~~CgG~G~CGTC~V~-------------------------~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+|.|.-+|.||+|. +.+.+||.||.... +++ .-++|.++.
T Consensus 80 ---ACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~-kel-dG~~v~vP~ 144 (159)
T KOG3309|consen 80 ---ACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLT-KEL-DGMRVAVPE 144 (159)
T ss_pred ---cccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccccccceEEEec-ccc-CCcEEECcc
Confidence 89999999999999 67889999999996 665 567776554
No 5
>CHL00134 petF ferredoxin; Validated
Probab=99.61 E-value=2.9e-15 Score=110.64 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=63.6
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE--------------
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~-------------- 120 (165)
|...+|++..++ +|. .+.+++.+|++|| ++|+++||++++ .|+ .|.||+|+++
T Consensus 1 ~~~~~v~~~~~~---~~~--~~~~~~~~~~tLL-~a~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~v~~~~~~~l 67 (99)
T CHL00134 1 MATYKVTLLSEE---EGI--DVTIDCPDDVYIL-DAAEEQGIDLPY------SCR-AGACSTCAGKVTEGTVDQSDQSFL 67 (99)
T ss_pred CCeEEEEEEecC---CCC--eEEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEEeCccccCcccCC
Confidence 334566664322 222 2678999999999 999999999999 699 8999999999
Q ss_pred ----cCCCeEEeeeceeccccCCcceEEEEcCchh
Q 031117 121 ----KPESWRLACQTIVGNKENSGKCRIKYLKVEA 151 (165)
Q Consensus 121 ----~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~ 151 (165)
..+||+|+||+++. +|++|+++.+..
T Consensus 68 ~~~e~~~g~~L~C~~~~~-----~d~~i~~~~~~~ 97 (99)
T CHL00134 68 DDDQLEAGFVLTCVAYPT-----SDCTILTHQEEE 97 (99)
T ss_pred CHHHHhCCeEEEeeCEEC-----CCeEEEeccccc
Confidence 45789999999996 999999877653
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.60 E-value=3.7e-15 Score=109.26 Aligned_cols=62 Identities=24% Similarity=0.467 Sum_probs=56.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++||++++ .|+ .|.||+|+|+ +.+||+|+||+++.
T Consensus 15 ~~~~~~~g~tLL-da~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~--- 83 (97)
T TIGR02008 15 ETIECPDDQYIL-DAAEEAGIDLPY------SCR-AGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPT--- 83 (97)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEEC---
Confidence 688999999999 999999999999 799 7999999999 45789999999996
Q ss_pred CCcceEEEEcCch
Q 031117 138 NSGKCRIKYLKVE 150 (165)
Q Consensus 138 ~~gDvtVe~~p~~ 150 (165)
+|++|+++.+.
T Consensus 84 --~di~v~~~~~~ 94 (97)
T TIGR02008 84 --SDCTIETHKEE 94 (97)
T ss_pred --CCeEEEecccc
Confidence 99999987754
No 7
>PTZ00038 ferredoxin; Provisional
Probab=99.56 E-value=1.3e-14 Score=119.69 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=65.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE----------------
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~---------------- 120 (165)
..+|+|.. ++|. +++++++|++|| |+|+++||++++ .|++ |.||+|+|+
T Consensus 95 ~~~Vt~~~----~~g~---~~~~v~~geTIL-dAae~aGI~lp~------sCr~-G~CGtCkvrV~~GeV~~~e~~~Ls~ 159 (191)
T PTZ00038 95 FYNITLQT----PDGE---KVIECDEDEYIL-DAAERQGVELPY------SCRG-GSCSTCAAKLLEGEVDNEDQSYLDD 159 (191)
T ss_pred eEEEEEEe----CCCc---EEEEeCCCCcHH-HHHHHcCCCCCc------CCCC-ccCCCCEeEEeecccccCccccCCH
Confidence 35566653 3332 689999999999 999999999999 7995 999999999
Q ss_pred --cCCCeEEeeeceeccccCCcceEEEEcCchhHHH
Q 031117 121 --KPESWRLACQTIVGNKENSGKCRIKYLKVEALCS 154 (165)
Q Consensus 121 --~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~~~~ 154 (165)
+++||+|+||+++. +|++|+++.+.++++
T Consensus 160 ee~~~G~~LaCqa~p~-----sDi~Ie~p~e~~~~~ 190 (191)
T PTZ00038 160 EQLKKGYCLLCTCYPK-----SDCTIETHKEDELHD 190 (191)
T ss_pred HHhcCCEEEEeeCEEC-----CCeEEecCChHHhcc
Confidence 46789999999996 899999988877653
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.56 E-value=1.2e-14 Score=115.42 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=67.3
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE-------------
Q 031117 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------- 120 (165)
Q Consensus 54 ~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------- 120 (165)
-|...+|+|++ ++|. +++++++|++|| |+|+++||++++ .|+ .|.||+|+++
T Consensus 51 ~m~~~~V~l~~----~~~~---~~~~~~~g~tIL-dAa~~~Gi~lp~------sCr-~G~CGtC~~~l~~G~V~~~~~~~ 115 (148)
T PLN03136 51 AMATYKVKFIT----PEGE---QEVECEEDVYVL-DAAEEAGIDLPY------SCR-AGSCSSCAGKVVSGSIDQSDQSF 115 (148)
T ss_pred eeeeEEEEEec----CCCc---EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEecCcCccCcccC
Confidence 35567788865 3442 688999999999 999999999999 699 8999999999
Q ss_pred -----cCCCeEEeeeceeccccCCcceEEEEcCchhH
Q 031117 121 -----KPESWRLACQTIVGNKENSGKCRIKYLKVEAL 152 (165)
Q Consensus 121 -----~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~~ 152 (165)
+++||+|+||+++. +|++|+++.+.++
T Consensus 116 L~~~e~~~G~~LaC~a~p~-----sD~~Ie~~~e~~l 147 (148)
T PLN03136 116 LDDEQISEGYVLTCVAYPT-----SDVVIETHKEEAI 147 (148)
T ss_pred CCHHHhcCCEEEEeEeEEC-----CCcEEecCChhhc
Confidence 45789999999996 8999999888764
No 9
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.53 E-value=3.2e-14 Score=101.96 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=50.9
Q ss_pred EEEEecC-ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE---------------cCCCeEEeeeceeccccCC
Q 031117 76 ERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------KPESWRLACQTIVGNKENS 139 (165)
Q Consensus 76 ~~v~v~~-G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~---------------~~~g~RLACQ~~v~~~~~~ 139 (165)
+.+++.+ |++|| ++|+++|+++++ .|+ .|.||+|+++ +.+|++|+||+++.
T Consensus 11 ~~~~~~~~~~tlL-~a~~~~gi~~p~------~Cr-~G~Cg~C~~~~~sG~v~~~~~~~~~~~~g~~L~C~~~p~----- 77 (84)
T PRK10713 11 TQLLCQDEHPSLL-AALESHNVAVEY------QCR-EGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAK----- 77 (84)
T ss_pred cEEEecCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEeEEEeCeEecCCCccchhhCCEEEEeeCEEC-----
Confidence 4678875 59999 999999999999 699 8999999998 45679999999996
Q ss_pred cceEEEE
Q 031117 140 GKCRIKY 146 (165)
Q Consensus 140 gDvtVe~ 146 (165)
+|++|++
T Consensus 78 sd~~ie~ 84 (84)
T PRK10713 78 GDIEIEM 84 (84)
T ss_pred CCEEEeC
Confidence 8998873
No 10
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.50 E-value=8.2e-14 Score=123.31 Aligned_cols=74 Identities=35% Similarity=0.666 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE--------------
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~-------------- 120 (165)
+.+|+|++. ||+ .+++++.+|+||| ++++++|+++++ .|+|.|.||+|+|+
T Consensus 29 ~~~v~v~~~------~~~--~~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~G~~~~~~~~~~ 93 (405)
T TIGR01941 29 SGDITIGIN------DDE--EKSITVPAGGKLL-NTLASNGIFISS------ACGGGGTCGQCRVRVVEGGGEILPTELS 93 (405)
T ss_pred cccEEEEEc------CCC--ceEEEECCCChHH-HHHHHcCCCCcc------cCCCccEeCCCEEEEccCCcCCChhhhh
Confidence 456777663 333 2689999999999 999999999999 79999999999999
Q ss_pred ------cCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 121 ------KPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 121 ------~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+.+|+|||||+.+. +|++|++..
T Consensus 94 ~L~~~~~~~g~rLaCq~~~~-----~d~~i~~~~ 122 (405)
T TIGR01941 94 HFSKREAKEGWRLSCQVKVK-----QDMSIEIPE 122 (405)
T ss_pred hcCHhHhcCCcEEEeeCEEC-----CCEEEEECc
Confidence 35679999999996 899998763
No 11
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.44 E-value=4.3e-13 Score=99.74 Aligned_cols=57 Identities=37% Similarity=0.593 Sum_probs=47.4
Q ss_pred EEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE-----------------------cCCCeEEeeecee
Q 031117 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-----------------------KPESWRLACQTIV 133 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~-----------------------~~~g~RLACQ~~v 133 (165)
.+.+..|++|| ++|.++||++++ +|+|. .||||+|+ .+.++||+||+++
T Consensus 16 ~~~~~~g~tiL-e~a~~~gi~i~~------~C~~g-~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLL-EAAERNGIPIEY------ACRGG-ACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHH-HHHHHCCCccee------cCCCC-ccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 44566699999 999999999999 79975 99999999 3345999999999
Q ss_pred ccccCCcceEEEE
Q 031117 134 GNKENSGKCRIKY 146 (165)
Q Consensus 134 ~~~~~~gDvtVe~ 146 (165)
. +|+.+.+
T Consensus 88 ~-----~d~~i~~ 95 (102)
T COG0633 88 K-----GDLDIEV 95 (102)
T ss_pred C-----CCcceEE
Confidence 6 6766544
No 12
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.43 E-value=5.3e-13 Score=118.33 Aligned_cols=73 Identities=36% Similarity=0.689 Sum_probs=61.0
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE---------------
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------- 120 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------- 120 (165)
.+++|++.+ ..+ +++++.+|+||| ++++++|+++++ .|+|.|.||+|+|+
T Consensus 34 ~~~~i~~~~----~~~----~~~~~~~g~tLL-~a~~~~gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~~~e~~~ 98 (409)
T PRK05464 34 GDVTIKING----DPE----KTITVPAGGKLL-GALASNGIFLSS------ACGGGGSCGQCRVKVKEGGGDILPTELSH 98 (409)
T ss_pred ccEEEEEcC----CCc----EEEEECCCchHH-HHHHHcCCCccc------CCCCccEeCCCEEEEecCCcCCChhhhhh
Confidence 567877732 111 578999999999 999999999999 79999999999999
Q ss_pred -----cCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 121 -----KPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 121 -----~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+.+|||||||+.+. +|++|++..
T Consensus 99 l~~~e~~~g~rLaCq~~~~-----~d~~ie~~~ 126 (409)
T PRK05464 99 ISKREAKEGWRLSCQVKVK-----QDMKIEVPE 126 (409)
T ss_pred cCHhhccCCcEEEeeCEEC-----CCEEEEECc
Confidence 34689999999996 899998763
No 13
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.42 E-value=1.8e-13 Score=120.58 Aligned_cols=73 Identities=33% Similarity=0.640 Sum_probs=62.5
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE----------------
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~---------------- 120 (165)
.++|+..+ |. ++.+++++|.+|| .+|..+||.+.+ .|||+|+||.|+|+
T Consensus 36 d~ti~IN~-----d~---e~~~t~~aG~kLL-~~L~~~gifi~S------aCGGggsC~QCkv~v~~ggge~LpTe~sh~ 100 (410)
T COG2871 36 DITIKING-----DP---EKTKTVPAGGKLL-GALASSGIFISS------ACGGGGSCGQCKVRVKKGGGEILPTELSHI 100 (410)
T ss_pred ceEEEeCC-----Ch---hhceecCCchhHH-HHHHhCCccccc------CCCCCccccccEEEEecCCCccCcchhhhh
Confidence 47777754 21 2578999999999 999999999999 79999999999999
Q ss_pred ----cCCCeEEeeeceeccccCCcceEEEEcCc
Q 031117 121 ----KPESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 121 ----~~~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
..+||||+||+.|+ .|+.++++.+
T Consensus 101 skrea~eG~RLsCQ~~Vk-----~dm~levpEe 128 (410)
T COG2871 101 SKREAKEGWRLSCQVNVK-----HDMDLEVPEE 128 (410)
T ss_pred hhhhhhccceEEEEeccc-----ccceeechHH
Confidence 67999999999997 8999986654
No 14
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.41 E-value=6.6e-13 Score=92.06 Aligned_cols=57 Identities=35% Similarity=0.575 Sum_probs=50.7
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcC------------------CCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP------------------ESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~------------------~g~RLACQ~~v~~~~ 137 (165)
+.+++++|++|| ++|+++|+++++ .|++ |.||+|+|++. +++|||||+.+.
T Consensus 10 ~~~~~~~g~~ll-~al~~~g~~~~~------~C~~-g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~--- 78 (84)
T cd00207 10 VEVEVPEGETLL-DAAREAGIDIPY------SCRA-GACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVT--- 78 (84)
T ss_pred EEEEECCCCcHH-HHHHHcCCCccc------CCCC-cCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeC---
Confidence 578999999999 999999999999 7995 79999999943 789999999995
Q ss_pred CCcceEEE
Q 031117 138 NSGKCRIK 145 (165)
Q Consensus 138 ~~gDvtVe 145 (165)
+|++|+
T Consensus 79 --~~i~v~ 84 (84)
T cd00207 79 --DGLVIE 84 (84)
T ss_pred --CCcEEC
Confidence 888874
No 15
>PRK05713 hypothetical protein; Provisional
Probab=99.38 E-value=1e-12 Score=112.31 Aligned_cols=59 Identities=32% Similarity=0.683 Sum_probs=53.7
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|+||| ++|+++||++++ .|+ .|.||+|+|+ +.+|+||+||+.+.
T Consensus 9 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~--- 77 (312)
T PRK05713 9 RRWSVPAGSNLL-DALNAAGVAVPY------SCR-AGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVV--- 77 (312)
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCC-CcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEEC---
Confidence 578999999999 999999999999 799 6999999999 34679999999996
Q ss_pred CCcceEEEEc
Q 031117 138 NSGKCRIKYL 147 (165)
Q Consensus 138 ~~gDvtVe~~ 147 (165)
+|++|++.
T Consensus 78 --~d~~i~~~ 85 (312)
T PRK05713 78 --GDLRVEVF 85 (312)
T ss_pred --CceEEEec
Confidence 89999975
No 16
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.36 E-value=5.9e-13 Score=123.19 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=57.6
Q ss_pred EEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceeccccC
Q 031117 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKEN 138 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~~ 138 (165)
..+ +.|+++| +++++.|+.+.+ .|||+|+||+|.|. +..|||||||+.+.
T Consensus 12 r~~-~~g~~il-~aar~~gv~i~s------~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~---- 79 (614)
T COG3894 12 RGE-DEGTTIL-DAARRLGVYIRS------VCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL---- 79 (614)
T ss_pred cCC-CCCchHH-HHHHhhCceEee------ecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc----
Confidence 345 7899999 999999999999 89999999999997 55789999999996
Q ss_pred CcceEEEEcCchhHH
Q 031117 139 SGKCRIKYLKVEALC 153 (165)
Q Consensus 139 ~gDvtVe~~p~~~~~ 153 (165)
||++|.++|++.+.
T Consensus 80 -gd~~i~ip~es~l~ 93 (614)
T COG3894 80 -GDLVIFIPPESRLE 93 (614)
T ss_pred -CceEEEcCchhhHH
Confidence 99999999998764
No 17
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.33 E-value=3.5e-12 Score=109.40 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=54.7
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE--------------------cCCCeEEeeeceecc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------------KPESWRLACQTIVGN 135 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~ 135 (165)
+++++.+|++|| ++|+++||++++ .|+ .|.||+|+|+ ..+|++|+||+++.
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~- 82 (339)
T PRK07609 12 RQFTAEPDETIL-DAALRQGIHLPY------GCK-NGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL- 82 (339)
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC-
Confidence 578999999999 999999999999 698 8999999998 35689999999996
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
+|++|++...
T Consensus 83 ----~d~~i~~~~~ 92 (339)
T PRK07609 83 ----SDLVLEAREV 92 (339)
T ss_pred ----CCEEEEeccc
Confidence 8999987654
No 18
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.32 E-value=5.7e-12 Score=109.14 Aligned_cols=61 Identities=31% Similarity=0.357 Sum_probs=53.7
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE--------------------cCCCeEEeeeceecc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------------KPESWRLACQTIVGN 135 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~ 135 (165)
.++++.+|+||| |+|+++|+.+++ .|+ .|.||+|+++ ..+|++|+||+++.
T Consensus 15 ~~~~~~~g~tlL-~a~~~~g~~~p~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~- 85 (340)
T PRK11872 15 LFFPVGKDELLL-DAALRNGINLPL------DCR-EGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVK- 85 (340)
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCcC------CCC-CeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEEC-
Confidence 457889999999 999999999999 699 7999999998 34679999999996
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
+|++|++..+
T Consensus 86 ----~d~~i~~~~~ 95 (340)
T PRK11872 86 ----SDAAFYFDFD 95 (340)
T ss_pred ----CceEEEecCc
Confidence 9999986543
No 19
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.24 E-value=8.8e-12 Score=94.82 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=68.1
Q ss_pred cEEEEEecCCC-CCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPRA-GDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~~-~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+++|.+.+|+. .....+++++|++.+++++| ++|...+-.++.+++++.+|+ .|.||+|.|.++.--+|||++.+.+
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVL-d~L~~Ik~~~D~sLafr~sCr-~giCGsCam~ING~~~LAC~t~v~~ 78 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVL-DALNYIKEEQDPSLAFRYSCR-SGICGSCAMRINGRPRLACKTQVDD 78 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHH-HHHHHHHHHT-TT--B--SSS-SSSSSTTEEEETTEEEEGGGSBGGG
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHH-HHHHHHHhccCCCeEEEecCC-CCCCCCCEEEECCceecceeeEchh
Confidence 46787777744 23667778899999999999 999999989999999999999 7999999999999999999999974
Q ss_pred ccCC--cceEEEEcCc
Q 031117 136 KENS--GKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~--gDvtVe~~p~ 149 (165)
.... ..++|++++.
T Consensus 79 ~~~~~~~~i~IePL~~ 94 (110)
T PF13085_consen 79 LIEKFGNVITIEPLPN 94 (110)
T ss_dssp CTTSETBEEEEEESTT
T ss_pred ccCCCcceEEEEECCC
Confidence 3321 1388888764
No 20
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.22 E-value=1.3e-11 Score=85.30 Aligned_cols=51 Identities=45% Similarity=0.731 Sum_probs=43.5
Q ss_pred EEEEecCChH-HHHHHHHhC-CCCccccCcccccCCCceeecccEEEcC-----------------CCe-EEeeeceec
Q 031117 76 ERAKAISGEK-LLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKP-----------------ESW-RLACQTIVG 134 (165)
Q Consensus 76 ~~v~v~~G~t-LLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~-----------------~g~-RLACQ~~v~ 134 (165)
+++++.+|++ || ++|+++ |+++++ .|+|.+ ||+|+|++. +++ |||||++++
T Consensus 8 ~~~~~~~~~~~ll-~~~~~~~gi~i~~------~C~~g~-Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 8 VTVEVPPGETLLL-DALERAGGIGIPY------SCGGGG-CGTCRVRVLEGEVQSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp EEEEEETTSBBHH-HHHHHTTTTTSTT------SSSSSS-SSTTEEEEEESEEETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EEEEeCCCccHHH-HHHHHcCCCCccc------CCCCCc-cCCcEEEEeeCcccCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 6889999999 88 999999 999999 799866 999999832 334 799999873
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.22 E-value=3.5e-11 Score=103.46 Aligned_cols=67 Identities=24% Similarity=0.460 Sum_probs=56.8
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE---------------
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------- 120 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------- 120 (165)
..++|++.+ .| +++++++|++|| ++|+++|+++++ .|+ .|.||+|+++
T Consensus 247 ~~~~v~~~~-----~~----~~~~~~~~~~lL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~ 309 (332)
T PRK10684 247 SGLTFTKLQ-----PA----REFYAPVGTTLL-EALESNKVPVVA------ACR-AGVCGCCKTKVVSGEYTVSSTMTLT 309 (332)
T ss_pred CceEEEEec-----CC----EEEEeCCCChHH-HHHHHcCCCccC------CCC-CcCCCCCEEEEecCcccccccccCC
Confidence 456776754 22 578899999999 999999999999 699 8999999999
Q ss_pred ---cCCCeEEeeeceeccccCCcceEE
Q 031117 121 ---KPESWRLACQTIVGNKENSGKCRI 144 (165)
Q Consensus 121 ---~~~g~RLACQ~~v~~~~~~gDvtV 144 (165)
+.+||+|+||+++. +|++|
T Consensus 310 ~~~~~~g~~l~C~~~~~-----~d~~i 331 (332)
T PRK10684 310 PAEIAQGYVLACSCHPQ-----GDLVL 331 (332)
T ss_pred HHHHhCCcEEEeeCEEC-----CCeEE
Confidence 45789999999996 88876
No 22
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.16 E-value=4.5e-11 Score=103.27 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecC-ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~-G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+|+|...+|..+....+.+++|++.+ |++|| |+|....-..+.+++++.+|+ .|.||+|.+.++..-+|||++.+.+
T Consensus 45 ~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL-d~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~ING~p~LAC~t~v~~ 122 (276)
T PLN00129 45 EFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL-DVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNIDGKNTLACLTKIDR 122 (276)
T ss_pred EEEEEeeCCCCCCCceeEEEEeCCCCCCchHH-HHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEECCcccccccccHhh
Confidence 45666677655445567777888765 89999 999998888899999999999 7999999999999999999999963
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
. ..+.++|++++.
T Consensus 123 ~-~~~~i~iePl~~ 135 (276)
T PLN00129 123 D-ESGPTTITPLPH 135 (276)
T ss_pred c-CCCcEEEEECCC
Confidence 2 235688888764
No 23
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.10 E-value=3.2e-10 Score=97.79 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=48.5
Q ss_pred EEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceeccccCC
Q 031117 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKENS 139 (165)
Q Consensus 78 v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~~~ 139 (165)
+++++|++|| ++|+++|+++++ .|+ .|.||+|+++ +.+|++|+||+++. .
T Consensus 277 ~~~~~~~slL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~----~ 344 (352)
T TIGR02160 277 SSLSRDESVL-DAALRARPDLPF------ACK-GGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPL----S 344 (352)
T ss_pred EecCCCCcHH-HHHHHcCCCCcC------CCC-CccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEEC----C
Confidence 5688999999 999999999999 799 5999999999 35789999999996 3
Q ss_pred cceEEE
Q 031117 140 GKCRIK 145 (165)
Q Consensus 140 gDvtVe 145 (165)
.+++|.
T Consensus 345 ~~~~~~ 350 (352)
T TIGR02160 345 DKLVVD 350 (352)
T ss_pred CcEEEe
Confidence 457765
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=99.08 E-value=1.4e-10 Score=97.72 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=74.5
Q ss_pred cEEEEEecCC-CCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPR-AGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~-~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+|+|...+|. .+....+.+++|++.+++||| ++|...+-..+.+++++.+|+ .|.||+|.+.++..-+|||++.+.+
T Consensus 6 ~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvL-daL~~Ik~~~D~sL~fr~sCr-~giCGsCam~ING~~~LAC~t~v~~ 83 (239)
T PRK13552 6 TFNIFRYNPQDPGSKPHMVTYQLEETPGMTLF-IALNRIREEQDPSLQFDFVCR-AGICGSCAMVINGRPTLACRTLTSD 83 (239)
T ss_pred EEEEEeeCCCCCCCCcceEEEEecCCCCCCHH-HHHHHHHhcCCCCeeEeccCC-CCCCCCceeEECCeEhhhhhccHhh
Confidence 4677777763 233456788899999999999 999999988999999999999 7999999999999999999999963
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
. ..+.++|++++.
T Consensus 84 ~-~~~~i~iePl~~ 96 (239)
T PRK13552 84 Y-PDGVITLMPLPV 96 (239)
T ss_pred c-CCCcEEEEECCC
Confidence 2 224788888764
No 25
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=99.02 E-value=3.3e-10 Score=96.08 Aligned_cols=89 Identities=24% Similarity=0.333 Sum_probs=76.2
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+++|...+|..+ .+.+++++|+..+|++|| ++|+..+-+.+.+++++.+|. .|.||+|.+.+..--||||.+.+.+.
T Consensus 4 ~~~i~R~~p~~~-~p~~~~yev~~~~~~~vL-daL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~ING~prLAC~t~~~~~ 80 (234)
T COG0479 4 KFKIYRYNPDDD-KPYWQTYEVPYDEGMTVL-DALLYIKEEQDPTLSFRRSCR-EGICGSCAMNINGKPRLACKTLMKDL 80 (234)
T ss_pred EEEEEEECCCCC-CcceEEEEecCCCCCcHH-HHHHHHHHhcCCccchhhhcc-CCcCCcceeEECCccccchhchhhhc
Confidence 577888887665 678888888889999999 999999989999999999999 69999999999999999999999744
Q ss_pred cCCcceEEEEcCc
Q 031117 137 ENSGKCRIKYLKV 149 (165)
Q Consensus 137 ~~~gDvtVe~~p~ 149 (165)
.. +.++|++++.
T Consensus 81 ~~-~~i~iePL~~ 92 (234)
T COG0479 81 EE-GVITIEPLPN 92 (234)
T ss_pred cC-CceEEEECCC
Confidence 32 3578887763
No 26
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.93 E-value=1.1e-09 Score=92.98 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=69.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-------ccccCcccccCCCceeecccEEEcCCCeEEee
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-------LYATYGKVMNCGGGGSCGTCIVEKPESWRLAC 129 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-------l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLAC 129 (165)
+++|.+.+| .+..+.+.+++|++.+++||| ++|...+-+ ...+++++.+|+ .|.||+|.+.++..-+|||
T Consensus 7 ~~~i~R~~~-~~~~~~~q~y~v~~~~~~tvL-daL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~ING~p~LAC 83 (249)
T PRK08640 7 RLIIKRQDG-PDSKPYWEEFEIPYRPNMNVI-SALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVINGKPRQAC 83 (249)
T ss_pred EEEEEeeCC-CCCCceeEEEEecCCCCCcHH-HHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEECCccchhh
Confidence 566666665 334566778899999999999 999976543 345588999999 7999999999999999999
Q ss_pred eceeccccCCcceEEEEcCc
Q 031117 130 QTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 130 Q~~v~~~~~~gDvtVe~~p~ 149 (165)
++.+.+. .+.++|++++.
T Consensus 84 ~t~v~~~--~~~i~iePl~~ 101 (249)
T PRK08640 84 TALIDQL--EQPIRLEPMST 101 (249)
T ss_pred hChHHHc--CCcEEEEECCC
Confidence 9999532 35788888753
No 27
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.91 E-value=1.6e-09 Score=91.36 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=70.5
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecC-ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~-G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+++|...+|..+..+.+.+++|++.+ +++|| ++|.+.+ +.+.+++++.+|+ .|.||+|.+.++..-+|||++.+.+
T Consensus 6 ~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvl-d~L~~ik-~~d~~l~fr~sCr-~giCGsCa~~iNG~~~LaC~t~~~~ 82 (235)
T PRK12575 6 ILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLL-DVLGRVK-AQDETLSYRRSCR-EGICGSDAMNINGRNGLACLTNMQA 82 (235)
T ss_pred EEEEEeeCCCCCCCceeEEEEecCCCCCCcHH-HHHHHHH-hcCCCeeeeccCC-CCCCCCCeeEECCeEcchhhCcHhH
Confidence 45666666654445667777888776 56899 9999988 7888999999999 7999999999999999999999963
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
. .+.++|++++.
T Consensus 83 ~--~~~i~iePl~~ 94 (235)
T PRK12575 83 L--PREIVLRPLPG 94 (235)
T ss_pred c--CCCEEEeECCC
Confidence 2 25688888754
No 28
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.91 E-value=8.5e-10 Score=93.17 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=70.4
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+|+|...+|+.+..+.++.+++++.+|+||| ++|...+-.++.+++++..|+ .|.||+|.|.++...+|||++.+.+.
T Consensus 8 ~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl-~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~InG~~~laC~t~~~~~ 85 (244)
T PRK12385 8 KIEVLRYNPEVDTEPHSQTYEVPYDETTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVNNVPKLACKTFLRDY 85 (244)
T ss_pred EEEEEeeCCCCCCCceeEEEEeeCCCCCcHH-HHHHHHHHhcCCCceeccCCC-CCcCCCCcceECccChhhHhhHHHHc
Confidence 3555556665444456777888999999999 999888877777788888999 69999999999887899999999632
Q ss_pred cCCcceEEEEcCc
Q 031117 137 ENSGKCRIKYLKV 149 (165)
Q Consensus 137 ~~~gDvtVe~~p~ 149 (165)
.+.++|++++.
T Consensus 86 --~~~~~iePl~~ 96 (244)
T PRK12385 86 --TGGMKVEALAN 96 (244)
T ss_pred --CCCeEEeeCCC
Confidence 24688887753
No 29
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.90 E-value=3.1e-09 Score=96.03 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=65.6
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+++|.+.+|+.+ +..|+.+++++++|+||| ++|++.+.....++....+|+ .|.||+|.|+++...+|||++.+.
T Consensus 5 ~~~i~r~~~~~~-~~~~~~~~v~~~~~~tvl-~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~-- 79 (486)
T PRK06259 5 TITVKRFDPEKD-EPHFESYEVPVKEGMTVL-DALEYINKTYDANIAFRSSCR-AGQCGSCAVTINGEPVLACKTEVE-- 79 (486)
T ss_pred EEEEEecCCCCC-CceeEEEEEeCCCCChHH-HHHHHhchhcCCCceecCCCC-CCCCCCCEEEECCeEecccccCCC--
Confidence 456666666555 567888888889999999 999976654333344445898 799999999987778999999996
Q ss_pred cCCcceEEEEcC
Q 031117 137 ENSGKCRIKYLK 148 (165)
Q Consensus 137 ~~~gDvtVe~~p 148 (165)
++++|+++.
T Consensus 80 ---~~~~i~~~~ 88 (486)
T PRK06259 80 ---DGMIIEPLD 88 (486)
T ss_pred ---CCCEEEecC
Confidence 679999875
No 30
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.88 E-value=7.7e-09 Score=86.18 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCC-----CceeecccEEEcCCC--eEE
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES--WRL 127 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G~G~CGTC~V~~~~g--~RL 127 (165)
|..|+|++ || ..+++++|+||| +||+++|++++. .|. +.|.|+.|+|++... .++
T Consensus 1 m~~v~i~i-------dg----~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~g~~~~~~ 62 (234)
T PRK07569 1 MSVKTLTI-------DD----QLVSAREGETLL-EAAREAGIPIPT------LCHLDGLSDVGACRLCLVEIEGSNKLLP 62 (234)
T ss_pred CceEEEEE-------CC----EEEEeCCCCHHH-HHHHHcCCCCCc------CcCCCCCCCCCccCCcEEEECCCCcccc
Confidence 55688876 34 468999999999 999999999999 687 679999999997653 456
Q ss_pred eeeceeccccCCcceEEEEcCc
Q 031117 128 ACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 128 ACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
||++.+. ..++|+...+
T Consensus 63 aC~t~v~-----~Gm~v~t~~~ 79 (234)
T PRK07569 63 ACVTPVA-----EGMVVQTNTP 79 (234)
T ss_pred CcCCCCC-----CCCEEEECCH
Confidence 9999996 6888876654
No 31
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.86 E-value=3.7e-09 Score=90.14 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 71 GSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 71 G~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+.+..+++++.++++|| ++|++.+...+.+++++..|+ .|.||+|.|.++..-+|||++.+...+..+.++|+.++
T Consensus 17 ~~~q~y~v~~~~~~tvL-d~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~InG~p~laC~t~~~~~~~~~~itiepl~ 92 (251)
T PRK12386 17 GELQDYTVEVNEGEVVL-DVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEINGRPRLMCMTRMSTFDEDETVTVTPMR 92 (251)
T ss_pred CceEEEEEeCCCCCCHH-HHHHHhccccCCCCcccCCCC-CCcCCCCEEEECccEeccHHhHHHHhCCCCeEEEccCC
Confidence 46778899999999999 999998888888899999999 79999999999999999999998643323467887764
No 32
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.85 E-value=8.1e-09 Score=90.44 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+++|...+|.. ...+..++|++.+|+||| |+|.+.+++++.++.++-+|+ .|.||+|.|+++...+|||++.+.+.
T Consensus 4 ~~~i~R~~~~~--~p~~~~~~v~~~~~~tvL-~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~inG~~~laC~t~v~~~ 79 (329)
T PRK12577 4 LFKILRQKQNS--APYVQTYTLEVEPGNTIL-DCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRINGRSALACKENVGSE 79 (329)
T ss_pred EEEEEeeCCCC--CCeEEEEEEECCCCChHH-HHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEECCeeecCcccchhhh
Confidence 35665555432 345677889999999999 999999999987788888999 68999999999888899999998631
Q ss_pred c---------CCcceEEEEcCc
Q 031117 137 E---------NSGKCRIKYLKV 149 (165)
Q Consensus 137 ~---------~~gDvtVe~~p~ 149 (165)
. ..+.++|++++.
T Consensus 80 ~~~~~~~~~~~~~~i~iePl~~ 101 (329)
T PRK12577 80 LARLSDSNSGAIPEITIAPLGN 101 (329)
T ss_pred hccccccccCCCCeEEEEECCC
Confidence 1 125788888754
No 33
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.83 E-value=6e-09 Score=74.64 Aligned_cols=72 Identities=25% Similarity=0.354 Sum_probs=46.7
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcc----cccCCCceeecccEEEcCCCe-EEeeec
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK----VMNCGGGGSCGTCIVEKPESW-RLACQT 131 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~----~~~CgG~G~CGTC~V~~~~g~-RLACQ~ 131 (165)
.|+|+| || +.+++.+|+||| +||+++|++++..-.. -..|. .|.|+.|.|+++... ..||++
T Consensus 3 ~v~i~i-------dG----~~v~~~~G~til-~al~~~gi~ip~~c~~~~~r~~~~~-~g~C~~C~Vev~g~~~v~AC~t 69 (82)
T PF13510_consen 3 MVTITI-------DG----KPVEVPPGETIL-EALLAAGIDIPRLCYHGRPRGGLCP-IGSCRLCLVEVDGEPNVRACST 69 (82)
T ss_dssp EEEEEE-------TT----EEEEEEET-BHH-HHHHHTT--B-EETTTS-EEBSSSS-STT-SS-EEEESSEEEEETTT-
T ss_pred EEEEEE-------CC----EEEEEcCCCHHH-HHHHHCCCeEEEeeeccCcccccCC-ccccceEEEEECCCcceEcccC
Confidence 477777 44 688999999999 9999999999983111 22232 599999999976554 899999
Q ss_pred eeccccCCcceEEEE
Q 031117 132 IVGNKENSGKCRIKY 146 (165)
Q Consensus 132 ~v~~~~~~gDvtVe~ 146 (165)
.+. ..|+|+.
T Consensus 70 ~v~-----~GM~V~T 79 (82)
T PF13510_consen 70 PVE-----DGMVVET 79 (82)
T ss_dssp B-------TTEEEE-
T ss_pred CCc-----CCcEEEE
Confidence 996 6777764
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.79 E-value=1.3e-08 Score=84.81 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=70.4
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEec-CChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~-~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+|+|.+.+|+.+....++.++++++ +|+||| ++|.+.+-.....++++..|+ .|.||+|.|.++...+|||.+.+.+
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~~~tvl-~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vnG~~~laC~t~~~~ 78 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVL-DALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNINGKNGLACITPISD 78 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHhCCccCCcceeeCCCC-CCCCCCCEEEECCcCccchhChHhH
Confidence 4778777776555667788899998 999999 999999855555566777996 6999999999987778999999964
Q ss_pred ccCCcceEEEEcCc
Q 031117 136 KENSGKCRIKYLKV 149 (165)
Q Consensus 136 ~~~~gDvtVe~~p~ 149 (165)
. ..+.++|+.+..
T Consensus 79 ~-~~~~~tiepl~~ 91 (232)
T PRK05950 79 L-KKGKIVIRPLPG 91 (232)
T ss_pred c-CCCeEEEEECCC
Confidence 3 224578887753
No 35
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.77 E-value=7e-09 Score=88.29 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=64.8
Q ss_pred cEEEEEecCCCCCCCCCCeEEEE-ecCChHHHHHHHHhCCCCc----cccCcccccCCCceeecccEEEcCCCe------
Q 031117 57 EIELEFIAPRAGDDGSYPVERAK-AISGEKLLRNIMLDNKIEL----YATYGKVMNCGGGGSCGTCIVEKPESW------ 125 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~-v~~G~tLLRdall~~gi~l----~~~~~~~~~CgG~G~CGTC~V~~~~g~------ 125 (165)
+++|...++. +....+.+++|+ +.+++||| ++|...+-.+ ..+++++.+|+ .|.||+|.+.++..-
T Consensus 4 ~~~i~R~~~~-~~~~~~q~y~v~~~~~~~tvL-d~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~ING~p~~~~~~ 80 (250)
T PRK07570 4 TLKIWRQKGP-DDKGKFETYEVDDISPDMSFL-EMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVINGRPHGPDRG 80 (250)
T ss_pred EEEEEecCCC-CCCceeEEEEecCCCCCCcHH-HHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEECCccCCCCcc
Confidence 4566655532 234456677888 67999999 9998764332 23588999999 799999999987776
Q ss_pred EEeeeceeccccCCcceEEEEcC
Q 031117 126 RLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 126 RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
||||++.+.+....+.++|++++
T Consensus 81 ~LAC~t~~~~~~~~~~i~iePl~ 103 (250)
T PRK07570 81 TTTCQLHMRSFKDGDTITIEPWR 103 (250)
T ss_pred cchhhhhhhhcCCCCeEEEEECC
Confidence 99999998633222568888875
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.74 E-value=3.1e-08 Score=85.28 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+++|.+.+|+ .|..++.+++++.+|++|| ++|.+.+..+..++.++..|+ .|.||.|.|.++...+|||++.+.+.
T Consensus 10 ~~~i~R~~~~--~~~~~~~~~v~~~~~~tvL-d~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~ING~~~laC~t~v~~~ 85 (279)
T PRK12576 10 IFKVKRYDPE--KGSWWQEYKVKVDRFTQVT-EALRRIKEEQDPTLSYRASCH-MAVCGSCGMKINGEPRLACKTLVLDV 85 (279)
T ss_pred EEEEEecCCC--CCCeEEEEEEecCCCCHHH-HHHHHhCCccCCCceecCCCC-CCCCCCCEEEECCcEeccccCcHHHh
Confidence 5666666654 3467788899999999999 999999988776678888997 89999999999888899999999742
Q ss_pred c--CCcceEEEEcCc
Q 031117 137 E--NSGKCRIKYLKV 149 (165)
Q Consensus 137 ~--~~gDvtVe~~p~ 149 (165)
. ..+.++|+.++.
T Consensus 86 ~~~~~~~~tiePl~~ 100 (279)
T PRK12576 86 AKKYNSVITIEPMDY 100 (279)
T ss_pred hcCCCCcEEEEECCC
Confidence 1 124578887763
No 37
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.67 E-value=1.5e-08 Score=83.64 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc
Q 031117 70 DGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 70 DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
...|..+++++.+|+||| ++|++.+.....+++++..|+ .|.||+|.|+++..-+|||++.+.+. ...-++|+.++.
T Consensus 11 ~~~~~~~~v~~~~~~tvl-~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vnG~~~laC~t~v~~~-g~~~~~iepl~~ 87 (220)
T TIGR00384 11 KPHLQSYEVPADEGMTVL-DALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVNGKPVLACKTKVEDL-GQPVMKIEPLPN 87 (220)
T ss_pred CceeEEEEEeCCCCCcHH-HHHHHHHHhcCCCceeecccC-CCCCCCCeeEECCEEhhhhhChHHHc-CCCcEEEeeCCC
Confidence 344566788888999999 999998866656677778998 79999999998877889999999731 111268887754
No 38
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.25 E-value=2.5e-06 Score=82.37 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=55.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCC-----CceeecccEEEcC-------CCeEEeeeceeccccCCcceE
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKP-------ESWRLACQTIVGNKENSGKCR 143 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G~G~CGTC~V~~~-------~g~RLACQ~~v~~~~~~gDvt 143 (165)
+++++++|+||| ++++++||.+++ .|. ..|.|+.|+|++. .++++||++.+. ..|+
T Consensus 9 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~-----~gm~ 76 (847)
T PRK08166 9 KEYEVNGADNLL-EACLSLGIDIPY------FCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPAT-----DGTF 76 (847)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------cccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCC-----CCCE
Confidence 578999999999 999999999999 797 3699999999963 348899999996 6888
Q ss_pred EEEcCchhHHHHHH
Q 031117 144 IKYLKVEALCSLYR 157 (165)
Q Consensus 144 Ve~~p~~~~~~~~~ 157 (165)
|+...+ ++..+-+
T Consensus 77 v~t~~~-~~~~~r~ 89 (847)
T PRK08166 77 ISIDDP-EAKAFRA 89 (847)
T ss_pred EEeCCH-HHHHHHH
Confidence 876543 3343333
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.12 E-value=5.7e-06 Score=77.94 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=59.0
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCC-----ceeecccEEEcCCCe--EE
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESW--RL 127 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG-----~G~CGTC~V~~~~g~--RL 127 (165)
|..|+|++ || +++++++|+||| ++|+++|+.++. .|.. .|.|+.|.|++.... .+
T Consensus 1 ~~~v~~~i-------dg----~~~~~~~g~ti~-~a~~~~g~~ip~------~c~~~~~~~~g~C~~C~V~v~g~~~~~~ 62 (652)
T PRK12814 1 MNTISLTI-------NG----RSVTAAPGTSIL-EAAASAGITIPT------LCFHQELEATGSCWMCIVEIKGKNRFVP 62 (652)
T ss_pred CCeEEEEE-------CC----EEEEeCCcCcHH-HHHHHcCCcccc------ccCCCCCCCccccceeEEEECCCcceec
Confidence 55678877 44 588999999999 999999999998 6873 799999999976544 66
Q ss_pred eeeceeccccCCcceEEEEcCc
Q 031117 128 ACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 128 ACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
||++.+. ..|+|+...+
T Consensus 63 aC~t~~~-----~Gm~v~t~~~ 79 (652)
T PRK12814 63 ACSTAVS-----EGMVIETENA 79 (652)
T ss_pred CcCCCCC-----CCCEEEeCcH
Confidence 9999996 6788877554
No 40
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.09 E-value=1.5e-05 Score=70.12 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=58.0
Q ss_pred CCCCcEEEEEecCCCCCCCCCCeEEEEe-cCChHHHHHHHHhCCCCccccCcccccCCC-----ceeecccEEEcCCC--
Q 031117 53 PEKPEIELEFIAPRAGDDGSYPVERAKA-ISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPES-- 124 (165)
Q Consensus 53 ~~~p~i~v~f~~p~~~~DG~~~~~~v~v-~~G~tLLRdall~~gi~l~~~~~~~~~CgG-----~G~CGTC~V~~~~g-- 124 (165)
+-.|+++|++ || ++|++ ++|+||| +|++++||+|+. .|.- .|.|..|.|++...
T Consensus 64 ~~~~~~~I~I-------DG----k~VeV~~~G~TIL-eAAr~~GI~IPt------LCy~~~L~p~G~CRlClVEVeG~~~ 125 (297)
T PTZ00305 64 EHKPRAIMFV-------NK----RPVEIIPQEENLL-EVLEREGIRVPK------FCYHPILSVAGNCRMCLVQVDGTQN 125 (297)
T ss_pred ccCCceEEEE-------CC----EEEEecCCCChHH-HHHHHcCCCcCc------cccCCCCCCCCccceeEEEECCCcC
Confidence 4457788866 44 68999 8999999 999999999999 6753 47899999997544
Q ss_pred eEEeeeceeccccCCcceEEEEcC
Q 031117 125 WRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 125 ~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
..-||.+.+. ..|+|++..
T Consensus 126 lv~AC~tpV~-----eGM~V~T~S 144 (297)
T PTZ00305 126 LVVSCATVAL-----PGMSIITDS 144 (297)
T ss_pred cccccCCcCC-----CCCEEEeCC
Confidence 3459999996 678887654
No 41
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.85 E-value=5.8e-05 Score=72.95 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=51.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCC-----CceeecccEEEcCCCe--EEeeeceeccccCCcceEEEEc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPESW--RLACQTIVGNKENSGKCRIKYL 147 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G~G~CGTC~V~~~~g~--RLACQ~~v~~~~~~gDvtVe~~ 147 (165)
+++++++|+||| +++..+||+++. .|. ..|.|.-|.|++.... +-||.+.+. ..|+|+..
T Consensus 12 ~~~~~~~g~til-~aa~~~gi~ip~------~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~-----~gm~V~t~ 78 (797)
T PRK07860 12 VEVSVPKGTLVI-RAAELLGIQIPR------FCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVT-----DGMVVKTQ 78 (797)
T ss_pred EEEEeCCCChHH-HHHHHcCCCCCe------ecCCCCCCCCcccCccEEEECCCcccccccCCCCC-----CCcEEEeC
Confidence 689999999999 999999999998 686 3699999999975443 449999996 67888875
No 42
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.85 E-value=5e-05 Score=74.28 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=52.6
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+++++++|++|| ++|+++||.++. +-..-.|...|.|+.|.|++.....+||++.+. ..|+|+...
T Consensus 9 ~~v~~~~G~til-~aa~~~gi~iP~-lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~-----dGM~V~T~s 74 (819)
T PRK08493 9 KECEAQEGEYIL-NVARRNGIFIPA-ICYLSGCSPTLACRLCMVEADGKRVYSCNTKAK-----EGMNILTNT 74 (819)
T ss_pred EEEEeCCCCHHH-HHHHHcCCcccc-ccccCCCCCCccccceEEEECCEEeccccCCCC-----CCCEEEecC
Confidence 588999999999 999999999976 111224566799999999987666899999996 567777653
No 43
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.68 E-value=0.00023 Score=60.20 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=51.8
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc-hhHHH
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV-EALCS 154 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~-~~~~~ 154 (165)
+++++.++++|| ++|+++.. +.. +| ..|+ .|.||.|.|.++.-...+|.+....-+...-.|||=+.+ +++|.
T Consensus 61 ~~~~v~~~~tLL-d~LR~~l~-ltG--tK-~GC~-~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~~~~lhp 134 (217)
T PRK11433 61 EQLEVDTRTTLL-DALREHLH-LTG--TK-KGCD-HGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLHP 134 (217)
T ss_pred EEEecCCCCcHH-HHHHHhcC-CCC--CC-CCCC-CCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCCCCCCCH
Confidence 577899999999 99997532 211 11 1599 699999999887667889998874233223456665542 45555
Q ss_pred HHHHh
Q 031117 155 LYRAV 159 (165)
Q Consensus 155 ~~~~~ 159 (165)
+-++.
T Consensus 135 vQ~Af 139 (217)
T PRK11433 135 MQAAF 139 (217)
T ss_pred HHHHH
Confidence 55443
No 44
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.64 E-value=0.00014 Score=67.81 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=51.8
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCC-----CceeecccEEEcCCC---eEEeeeceeccccCCcceEEEEc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES---WRLACQTIVGNKENSGKCRIKYL 147 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G~G~CGTC~V~~~~g---~RLACQ~~v~~~~~~gDvtVe~~ 147 (165)
+++++++|+||| ++++++||+++. .|. ..|.|..|.|++... ...||++.+. ..|+|+..
T Consensus 6 ~~~~~~~g~~il-~a~~~~gi~ip~------~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~-----~gm~v~t~ 73 (603)
T TIGR01973 6 KELEVPKGTTVL-QACLSAGIEIPR------FCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVT-----DGMKISTN 73 (603)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCccc------cCCCCCCCCCCccccCEEEECCCCCCcccccCCCCC-----CCCEEEeC
Confidence 689999999999 999999999999 796 468999999997543 4679999996 67788764
Q ss_pred C
Q 031117 148 K 148 (165)
Q Consensus 148 p 148 (165)
.
T Consensus 74 ~ 74 (603)
T TIGR01973 74 S 74 (603)
T ss_pred C
Confidence 3
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.61 E-value=0.00019 Score=68.69 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=51.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCC-----CceeecccEEEcCCC---eEEeeeceeccccCCcceEEEEc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES---WRLACQTIVGNKENSGKCRIKYL 147 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G~G~CGTC~V~~~~g---~RLACQ~~v~~~~~~gDvtVe~~ 147 (165)
+++++++|+||| +|+.++||+|+. .|. -.|.|..|.|++..+ ..-||.+.+. ..|+|...
T Consensus 9 ~~v~v~~g~til-~a~~~~gi~IP~------lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~-----~gm~v~T~ 76 (687)
T PRK09130 9 KEIEVPDGYTLL-QACEAAGAEIPR------FCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVG-----EGMVIFTN 76 (687)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCcCc------ccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCC-----CCCEEEeC
Confidence 689999999999 999999999999 785 358999999997654 4558999996 57778765
Q ss_pred C
Q 031117 148 K 148 (165)
Q Consensus 148 p 148 (165)
.
T Consensus 77 s 77 (687)
T PRK09130 77 T 77 (687)
T ss_pred C
Confidence 4
No 46
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.59 E-value=0.00017 Score=69.07 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=50.9
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCC-----ceeecccEEEcCCCe--EEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESW--RLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG-----~G~CGTC~V~~~~g~--RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+++++++|+||| ++++++||+++. .|.- .|.|.-|.|+++... +.||.+.+. ..|+|....
T Consensus 9 ~~~~~~~g~~il-~a~~~~g~~ip~------~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~-----~gm~v~t~~ 76 (776)
T PRK09129 9 KKVEVPEGSMVI-EAADKAGIYIPR------FCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVT-----DGMKVFTRS 76 (776)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCC-----CCCEEEcCC
Confidence 689999999999 999999999998 6873 379999999986544 569999996 677777644
No 47
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=97.53 E-value=0.00046 Score=59.35 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=64.0
Q ss_pred CcEEEEEecCCCCCCCCCCeE--EEEec-CChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 56 PEIELEFIAPRAGDDGSYPVE--RAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~--~v~v~-~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
.+++|-.-+|+. +...+... +|... =|--+| |||.+.+-+++..++|+.+|+ .|.||.|...+..+.-|||-+.
T Consensus 47 KtFeIYRwnPd~-pg~kP~~Q~y~vDL~~CGpMvL-DALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~G~NtLACi~k 123 (288)
T KOG3049|consen 47 KTFEIYRWNPDN-PGDKPHLQTYEVDLNDCGPMVL-DALIKIKNEMDPTLTFRRSCR-EGICGSCAMNINGTNTLACICK 123 (288)
T ss_pred ceEEEEecCCCC-CCCCccceeeeecHHhcchHHH-HHHHHhhcccCCceehhhhhh-ccccccceeccCCCceeEEEEe
Confidence 345554445422 22233333 34333 367789 999999999999999999999 7999999999999999999999
Q ss_pred eccccCCcceEEEEcC
Q 031117 133 VGNKENSGKCRIKYLK 148 (165)
Q Consensus 133 v~~~~~~gDvtVe~~p 148 (165)
+.. +......|-.+|
T Consensus 124 Id~-n~sK~~kIyPLP 138 (288)
T KOG3049|consen 124 IDQ-NESKSTKIYPLP 138 (288)
T ss_pred ecc-CCcccceeecCc
Confidence 963 233556666555
No 48
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.44 E-value=0.00042 Score=56.09 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=55.7
Q ss_pred EEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc-hhHH
Q 031117 76 ERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV-EALC 153 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~-~~~~ 153 (165)
+++++.++++|| +.|++.|+. ... .|+ .|.||.|.|.++.-...||.+.+...+...-.|||=+.. ..+|
T Consensus 18 ~~~~~~~~~~Ll-~~LR~~gltgtK~------GC~-~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~~~~l~ 89 (159)
T PRK09908 18 FQLHAAPGTPLS-ELLREQGLLSVKQ------GCC-VGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLS 89 (159)
T ss_pred EEEecCCCCcHH-HHHHHcCCCCCCC------CcC-CCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCCCCCCC
Confidence 677899999999 999987653 333 699 699999999998888999998775444444467776643 4455
Q ss_pred HHHHHh
Q 031117 154 SLYRAV 159 (165)
Q Consensus 154 ~~~~~~ 159 (165)
.+-.+.
T Consensus 90 pvQ~Af 95 (159)
T PRK09908 90 HVQQAY 95 (159)
T ss_pred HHHHHH
Confidence 554443
No 49
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.34 E-value=0.0006 Score=54.62 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=54.6
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc-hhHH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV-EALC 153 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~-~~~~ 153 (165)
++++++++++|| +.|++. |+. + -...|+ .|.||.|.|.++..-+.||.+.+...+...-.|||-+.. .++|
T Consensus 11 ~~~~~~~~~~Ll-~~LR~~lglt--g---~K~gC~-~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~~l~ 83 (148)
T TIGR03193 11 REDAVADNMLLV-DYLRDTVGLT--G---TKQGCD-GGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLS 83 (148)
T ss_pred EEeecCCCCcHH-HHHHHhcCCC--C---CCCCCC-CCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCCCCC
Confidence 577899999999 999974 433 1 122699 699999999998889999998775444334567776643 3455
Q ss_pred HHHHHh
Q 031117 154 SLYRAV 159 (165)
Q Consensus 154 ~~~~~~ 159 (165)
.+-++.
T Consensus 84 pvq~af 89 (148)
T TIGR03193 84 RLQQAF 89 (148)
T ss_pred HHHHHH
Confidence 554443
No 50
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.07 E-value=0.0016 Score=63.01 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=50.6
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCC--CeEEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPE--SWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~--g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
.+|++++|+||| +|++++||+|++- =+.=.|+-.|.|..|.|+... ...-||-+.+. ..++|.+.-
T Consensus 9 ~ei~v~~g~tvL-qAa~~aGi~IP~f-Cyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~-----dGM~I~T~s 76 (693)
T COG1034 9 KEIEVPEGETVL-QAAREAGIDIPTF-CYHPRLSIAGACRMCLVEVEGAPKLVASCATPVT-----DGMVISTNS 76 (693)
T ss_pred EEEecCCCcHHH-HHHHHcCCCCCcc-cccCCCCcccceeEEEEEecCCCccccccccccC-----CCeEEecCC
Confidence 589999999999 9999999999971 111134556999999999765 46789999775 556676543
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.06 E-value=0.0015 Score=52.37 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=52.8
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCchhHHH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKVEALCS 154 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~~~~ 154 (165)
+++.+.++++|| +.|++. ++.-... .|+ .|.||.|.|.++.--..||.+.+...+...-.|||=+....+|.
T Consensus 13 ~~~~~~~~~~Ll-~~LR~~~~ltgtK~-----gC~-~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~~~l~p 85 (151)
T TIGR03198 13 WEVAAVPTTRLS-DLLRKELQLTGTKV-----SCG-IGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAENELDP 85 (151)
T ss_pred EEeecCCCcHHH-HHHHhccCCCCCCC-----CCC-CCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCCCCCCH
Confidence 567788999988 888864 5542221 599 69999999999888899999877544443445666564444555
Q ss_pred HHHH
Q 031117 155 LYRA 158 (165)
Q Consensus 155 ~~~~ 158 (165)
+-.+
T Consensus 86 vQ~a 89 (151)
T TIGR03198 86 CQTA 89 (151)
T ss_pred HHHH
Confidence 4444
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.69 E-value=0.0056 Score=60.31 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=50.2
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCC-----ceeecccEEEcCCCeEEeeeceeccccCCcceEEEEc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYL 147 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG-----~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~ 147 (165)
+++++++|+||| ++|.++||++++ .|.- -++|-+|.|+++.-..=||-+.+. ..++|...
T Consensus 13 ~~~~v~~G~tiL-~a~~~~gI~iP~------iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~-----dGm~v~t~ 77 (978)
T COG3383 13 RSIEVEEGTTIL-RAANRNGIEIPH------ICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVE-----DGMVVRTN 77 (978)
T ss_pred eEEecCCChHHH-HHHHhcCCcccc------eeccCCCCcccccceEEEEecCceecccccccc-----CCcEEecc
Confidence 588999999999 899999999999 7863 379999999987777789999996 45566543
No 53
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.53 E-value=0.0059 Score=49.48 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=51.2
Q ss_pred EEEEecCChHHHHHHHHh-CCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLD-NKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~-~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+++++.+.++|| ++|++ .++.-... .|+ .|.||.|.|.++..-+.||.+.+...+...-.|||=+.
T Consensus 13 ~~~~~~p~~~Ll-~~LRd~l~ltgtk~-----GC~-~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~ 79 (156)
T COG2080 13 VELDVDPRTPLL-DVLRDELGLTGTKK-----GCG-HGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLA 79 (156)
T ss_pred EEEEeCCCChHH-HHHHHhcCCCCcCC-----CCC-CccCCceEEEECCeEehHHHHHHHHhCCCeEEEeeccc
Confidence 789999999999 88884 44443222 699 89999999999888999999887655555556777555
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.34 E-value=0.0058 Score=60.92 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=54.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCch-hHHH
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKVE-ALCS 154 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~-~~~~ 154 (165)
+++++.++++|| +.|++ +.+.+ +|.+-|+ .|.||.|.|.++..-..||.+.....+...-.|||=+..+ ++|.
T Consensus 12 ~~~~~~~~~~l~-~~LR~--~~~~~--~k~g~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~ 85 (956)
T PRK09800 12 QELTVNPGENVQ-KLLFN--MGMHS--VRNSDDG-FGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGKWNELSL 85 (956)
T ss_pred EEEecCCCCCHH-HHHHH--CCCCc--cccCCCC-cccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcCCCCCCCH
Confidence 678899999999 99998 44444 2333355 8999999999988899999987764444344577666432 4454
Q ss_pred HHHH
Q 031117 155 LYRA 158 (165)
Q Consensus 155 ~~~~ 158 (165)
+-++
T Consensus 86 ~q~a 89 (956)
T PRK09800 86 VQQA 89 (956)
T ss_pred HHHH
Confidence 4443
No 55
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=96.33 E-value=0.003 Score=53.78 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=38.8
Q ss_pred HHHHHHhCCCC---ccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 87 LRdall~~gi~---l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
+++.|++.|++ +..++.++|.|| -|.||.|+|....|.+++|.-=
T Consensus 227 v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~~~~~c~~g 274 (289)
T PRK08345 227 VFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTSIKYVCKDG 274 (289)
T ss_pred HHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCcceEEeCCC
Confidence 44788899996 888899999999 8999999999777888999743
No 56
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=96.24 E-value=0.0059 Score=50.53 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=38.7
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
+++.|.++|++.+-++-.+|.|| -|.|+.|.|+...++++.|.-=
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~~~~~~~~C~~G 239 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTVGGETKFACVDG 239 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCc-cceeeeEEEEeCCCEEEEeCcC
Confidence 34778899999999999999999 8999999999766678999753
No 57
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=96.13 E-value=0.007 Score=51.34 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=37.7
Q ss_pred HHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 88 RNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 88 Rdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
.+++.+.|++++.++-.+|.|| .|.|+.|.|....++.+.|.--
T Consensus 197 ~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~~~~~~~C~dG 240 (281)
T PRK06222 197 AELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVGGETKFACVDG 240 (281)
T ss_pred HHHHHhcCCCEEEECcccccCc-ccccceeEEEECCCEEEEeCCC
Confidence 3778899999999999999996 9999999998656678899743
No 58
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=96.07 E-value=0.0047 Score=51.09 Aligned_cols=44 Identities=25% Similarity=0.717 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeec
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~ 131 (165)
++++|.++|++...+.-..|-|| -|.||.|.|....+.+++|.-
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCCCEEEeCc
Confidence 44778889998888888899999 799999999977777899964
No 59
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=95.42 E-value=0.018 Score=47.15 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=36.0
Q ss_pred HHHHHHhC--CCCccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 87 LRNIMLDN--KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 87 LRdall~~--gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
+++.|.+. ++.++.+...+|.|| -|.||.|.|....+.+++|.--
T Consensus 193 ~~~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~~~~~~~C~~g 239 (243)
T cd06192 193 VVEALDEWLQLIKASVSNNSPMCCG-IGICGACTIETKHGVKRLCKDG 239 (243)
T ss_pred HHHHHHhhcCCceEEEECCccccCc-cccccceEEEeCCCeEEEeCCC
Confidence 33556665 678899999999999 7999999998666667999753
No 60
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.27 E-value=0.018 Score=57.39 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=53.6
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCch-hHHH
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKVE-ALCS 154 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~-~~~~ 154 (165)
+++++.++++|| +.|++.|+. + .|.+-|+ .|.||.|.|.++.--..||.+.....+...-.|||=+.++ .+|.
T Consensus 8 ~~~~~~~~~~l~-~~LR~~~l~--~--~k~~~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~~~~~~~ 81 (951)
T TIGR03313 8 QTLECKLGENVQ-TLLFNMGMH--S--VRNSDDG-FGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQWNQLSL 81 (951)
T ss_pred EEEecCCCCCHH-HHHHHCCCC--C--CcCCCCC-cccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCCCCCCCH
Confidence 577889999999 999996543 1 1122366 8999999999988889999987754444444566655442 4555
Q ss_pred HHHH
Q 031117 155 LYRA 158 (165)
Q Consensus 155 ~~~~ 158 (165)
+-++
T Consensus 82 ~q~a 85 (951)
T TIGR03313 82 VQQA 85 (951)
T ss_pred HHHH
Confidence 5443
No 61
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=95.15 E-value=0.038 Score=54.43 Aligned_cols=65 Identities=20% Similarity=0.402 Sum_probs=49.4
Q ss_pred EEEecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc
Q 031117 77 RAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
++++.++++|| +.|++. |+. ... .|+ .|.||.|.|.++.--..+|.+.....+...-.|||=+..
T Consensus 9 ~~~~~~~~~l~-~~lr~~~~~~~~k~------gc~-~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~ 75 (848)
T TIGR03311 9 EVDVNEEKKLL-EFLREDLRLTGVKN------GCG-EGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTE 75 (848)
T ss_pred EeeCCCCCcHH-HHHHHhcCCCcCCC------CCC-CCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCC
Confidence 56788999999 999963 653 444 699 799999999998888999998876444444456766543
No 62
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=95.12 E-value=0.022 Score=47.18 Aligned_cols=44 Identities=18% Similarity=0.543 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEEcC---CCeEEeeec
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP---ESWRLACQT 131 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~---~g~RLACQ~ 131 (165)
++++|++.|++...++...|.|+ -|.||.|.+.-. .+.+|+|.-
T Consensus 195 ~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~~~~~~~~~c~~ 241 (246)
T cd06218 195 VAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKDDEGGYKRVCKD 241 (246)
T ss_pred HHHHHHhcCCCEEEEecccccCc-cceecccEEEeecCCCccEEEeCc
Confidence 44778999999888889999999 699999999843 678999964
No 63
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.87 E-value=0.093 Score=52.17 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=57.2
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccc-cC--c--ccccCCCceeecccEEEcCCC-----e
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA-TY--G--KVMNCGGGGSCGTCIVEKPES-----W 125 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~-~~--~--~~~~CgG~G~CGTC~V~~~~g-----~ 125 (165)
..|+|+| || +.+++.+|+||. .||+.+|+.+-. +. + +-..|. .|.|--|.|.+..+ .
T Consensus 11 ~~~~~~~-------dg----~~~~~~~g~t~a-~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~~~~ 77 (985)
T TIGR01372 11 RPLRFTF-------DG----KSYSGFAGDTLA-SALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQREPN 77 (985)
T ss_pred CeEEEEE-------CC----EEeecCCCCHHH-HHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCCCCC
Confidence 4688888 44 578999999999 999999987542 11 1 127897 48899999998643 3
Q ss_pred EEeeeceeccccCCcceEEEEcCc
Q 031117 126 RLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 126 RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
..||++.+. ..++|+...-
T Consensus 78 ~~ac~~~~~-----~gm~~~~~~~ 96 (985)
T TIGR01372 78 TRATTQELY-----DGLVATSQNR 96 (985)
T ss_pred ccceeEEcc-----cCCEEecccC
Confidence 689999996 6777876543
No 64
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.73 E-value=0.05 Score=50.22 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=52.6
Q ss_pred EEE-EecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEc----CC-----CeEEeeeceeccccCCcceE
Q 031117 76 ERA-KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEK----PE-----SWRLACQTIVGNKENSGKCR 143 (165)
Q Consensus 76 ~~v-~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~----~~-----g~RLACQ~~v~~~~~~gDvt 143 (165)
+++ ++.++++|| +.|+++ |+. ... -|+ .|.||.|.|.+ +. --..||.+-+..-+...-.|
T Consensus 10 ~~~~~~~~~~~ll-~~lR~~~~l~g~k~------gC~-~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 81 (467)
T TIGR02963 10 VTLSDVDPTRTLL-DYLREDAGLTGTKE------GCA-EGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVT 81 (467)
T ss_pred EEeecCCCCCCHH-HHHHHhcCCCCCCc------ccC-CCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEe
Confidence 566 588999999 999974 544 333 699 69999999996 55 46788988765443334457
Q ss_pred EEEcCc--hhHHHHHHHh
Q 031117 144 IKYLKV--EALCSLYRAV 159 (165)
Q Consensus 144 Ve~~p~--~~~~~~~~~~ 159 (165)
||=+.. ..+|.+-++.
T Consensus 82 vEgl~~~~~~l~~~q~a~ 99 (467)
T TIGR02963 82 VEDLRQPDGRLHPVQQAM 99 (467)
T ss_pred cCCCCCCCCCCCHHHHHH
Confidence 776652 3566666554
No 65
>PRK05802 hypothetical protein; Provisional
Probab=94.70 E-value=0.039 Score=48.25 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=36.5
Q ss_pred HHHHh--CCCCccccCcccccCCCceeecccEEEcCCC-eEEeeeceec
Q 031117 89 NIMLD--NKIELYATYGKVMNCGGGGSCGTCIVEKPES-WRLACQTIVG 134 (165)
Q Consensus 89 dall~--~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g-~RLACQ~~v~ 134 (165)
+.+.+ .+|++..++-.+|.|| -|.||.|.|....+ ++..|...+.
T Consensus 271 ~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 271 EYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred HHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEECCEEEEEEeeeecC
Confidence 44555 7898888999999999 89999999997544 4688988763
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.41 E-value=0.072 Score=51.11 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=38.0
Q ss_pred HHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeecee
Q 031117 88 RNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (165)
Q Consensus 88 Rdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v 133 (165)
.+++.+.|++...|+..+|.|| -|.||.|.|.....++++|.--+
T Consensus 197 ~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~~~~~~~~C~dGP 241 (752)
T PRK12778 197 CLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTVGGKTKFACVDGP 241 (752)
T ss_pred HHHHHHcCCCEEEeCcccccCc-ccccCcceeEeCCCeEEEECCCC
Confidence 3678889999999999999997 89999999986555789997544
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=93.72 E-value=0.071 Score=43.52 Aligned_cols=42 Identities=21% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeec
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~ 131 (165)
++++|.+.|++..-.+...+.|| .|.||.|.|... | .++|.-
T Consensus 182 ~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~-~-~~~c~~ 223 (233)
T cd06220 182 VLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT-G-LRVCRD 223 (233)
T ss_pred HHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC-C-eEEeCc
Confidence 33778889986555566778999 899999999875 5 678853
No 68
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=93.39 E-value=0.047 Score=45.83 Aligned_cols=39 Identities=28% Similarity=0.722 Sum_probs=32.0
Q ss_pred HHHHHhCCCC---ccccCcccccCCCceeecccEEEcCCCeEEeeec
Q 031117 88 RNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (165)
Q Consensus 88 Rdall~~gi~---l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~ 131 (165)
++.|++.|++ +..++..+|.|| .|.||.|+|. ..++|.-
T Consensus 206 ~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~----~~~~c~~ 247 (261)
T TIGR02911 206 VQELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID----DVYVCLD 247 (261)
T ss_pred HHHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC----CEEEECC
Confidence 3678889995 678888999999 8999999997 2778863
No 69
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=92.52 E-value=0.077 Score=33.71 Aligned_cols=27 Identities=33% Similarity=0.989 Sum_probs=19.4
Q ss_pred ccccCCCceeecccEEEcCCC--eEEeeec
Q 031117 104 KVMNCGGGGSCGTCIVEKPES--WRLACQT 131 (165)
Q Consensus 104 ~~~~CgG~G~CGTC~V~~~~g--~RLACQ~ 131 (165)
.+|.|| -|.|+.|.|...++ +.+.|.-
T Consensus 2 ~~M~CG-~G~C~~C~v~~~~~~~~~~vC~d 30 (40)
T PF10418_consen 2 RRMACG-VGACGGCVVPVKDGDGYKRVCKD 30 (40)
T ss_dssp ---SSS-SSSS-TTEEECSSTTSEEETTTT
T ss_pred CcccCC-CcEeCCcEeeeecCCcCEEEeCc
Confidence 368898 89999999996654 8999964
No 70
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=92.42 E-value=0.082 Score=43.92 Aligned_cols=39 Identities=23% Similarity=0.689 Sum_probs=32.0
Q ss_pred HHHHHHhCCCC---ccccCcccccCCCceeecccEEEcCCCeEEeee
Q 031117 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQ 130 (165)
Q Consensus 87 LRdall~~gi~---l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ 130 (165)
++++|++.|++ +..++...|-|| .|.||.|+|. ..++|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~----~~~~~~ 246 (253)
T cd06221 205 VAKELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG----PKYVCK 246 (253)
T ss_pred HHHHHHHcCCCHHHEEEehhhccccC-CccccCcccC----CeeEEC
Confidence 34888999997 888888889999 8999999997 256663
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.17 E-value=0.17 Score=50.68 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=37.7
Q ss_pred HHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeecee
Q 031117 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (165)
Q Consensus 89 dall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v 133 (165)
+++++.||+..-++..+|.|| -|.||.|+|....+++++|.--+
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~~~~~~~C~DGP 241 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVGGEVKFACVDGP 241 (1006)
T ss_pred HHHHHCCCcEEECChhheeCc-cceeCCCEeeeCCceEEEeCCCC
Confidence 667788999888899999998 89999999987667789997554
No 72
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.65 E-value=0.24 Score=51.20 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=50.9
Q ss_pred EEEecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcC----------CCeEEeeeceeccccCCcceEE
Q 031117 77 RAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKP----------ESWRLACQTIVGNKENSGKCRI 144 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~----------~g~RLACQ~~v~~~~~~gDvtV 144 (165)
...+.++++|| +.|++. |+. ... -|+ .|.||.|.|.+. .-..-||.+.+..-+...-+||
T Consensus 14 ~~~~~~~~~ll-~~LR~~~~l~gtk~------gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~Tv 85 (1330)
T TIGR02969 14 EKNVDPETMLL-PYLRKKLRLTGTKY------GCG-GGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTV 85 (1330)
T ss_pred eccCCCCCcHH-HHHHhhcCCCCCCC------CcC-CCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEec
Confidence 34689999999 999974 544 333 699 699999999965 2367889887654444445577
Q ss_pred EEcCc--hhHHHHHHHh
Q 031117 145 KYLKV--EALCSLYRAV 159 (165)
Q Consensus 145 e~~p~--~~~~~~~~~~ 159 (165)
|=+.. ..+|.+-++.
T Consensus 86 Egl~~~~~~l~pvq~a~ 102 (1330)
T TIGR02969 86 EGIGSTRTRLHPVQERI 102 (1330)
T ss_pred CCcCCCCCCCCHHHHHH
Confidence 66643 3566555544
No 73
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=90.68 E-value=0.12 Score=43.50 Aligned_cols=32 Identities=31% Similarity=0.795 Sum_probs=27.6
Q ss_pred HHHHHhCCCC---ccccCcccccCCCceeecccEEE
Q 031117 88 RNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (165)
Q Consensus 88 Rdall~~gi~---l~~~~~~~~~CgG~G~CGTC~V~ 120 (165)
++.|++.|++ +..++..+|.|| .|.||.|+|.
T Consensus 208 ~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 208 VLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 3778899996 668888899999 8999999986
No 74
>PLN00192 aldehyde oxidase
Probab=88.29 E-value=0.84 Score=47.38 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=50.7
Q ss_pred EEE-EecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEc----------CCCeEEeeeceeccccCCcce
Q 031117 76 ERA-KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEK----------PESWRLACQTIVGNKENSGKC 142 (165)
Q Consensus 76 ~~v-~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~----------~~g~RLACQ~~v~~~~~~gDv 142 (165)
+++ .+.+.++|| +.|+++ |+. ... -|+ .|.||.|.|.+ ..-..-||.+.+..-....-+
T Consensus 15 ~~~~~~~p~~~Ll-~~LR~~~~ltgtK~------gC~-~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 86 (1344)
T PLN00192 15 FELSSVDPSTTLL-EFLRTQTPFKSVKL------GCG-EGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSIT 86 (1344)
T ss_pred EEeccCCCCCcHH-HHHHHhhCCCCcCC------CCC-CCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEE
Confidence 456 588999999 999974 544 333 699 79999999985 234577888766533333456
Q ss_pred EEEEcC--chhHHHHHHHh
Q 031117 143 RIKYLK--VEALCSLYRAV 159 (165)
Q Consensus 143 tVe~~p--~~~~~~~~~~~ 159 (165)
|||=+. ...+|.+-++.
T Consensus 87 TvEgl~~~~~~lhpvq~a~ 105 (1344)
T PLN00192 87 TSEGLGNSKDGFHPIHKRF 105 (1344)
T ss_pred eecCcCCCCCCCCHHHHHH
Confidence 777664 34566555544
No 75
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.36 E-value=1.3 Score=44.41 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=35.9
Q ss_pred HHHHHhCCCCccccCcccccCCCceeecccEEEc-CCCe---EEeeecee
Q 031117 88 RNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK-PESW---RLACQTIV 133 (165)
Q Consensus 88 Rdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~-~~g~---RLACQ~~v 133 (165)
.+.+.+.|++.+.++..+|.|| -|.||.|.|.. .+|. +++|.--+
T Consensus 863 ~~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~~~G~~~~~~vC~DGP 911 (944)
T PRK12779 863 SDLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVTIDGKMVRKHACIDGP 911 (944)
T ss_pred HHHHHHcCCCeEEeecccccCC-CeeeCeeeeeeecCCeeeeeEEECCCC
Confidence 3677899999999999999997 89999999973 3452 67886543
No 76
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=86.28 E-value=1.8 Score=41.74 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCC-----ceeecccEEEcC--CCeEEe
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKP--ESWRLA 128 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG-----~G~CGTC~V~~~--~g~RLA 128 (165)
.+|+| |++ | +.|.+++|.|+| +|....|++|+- .|.- .|.|-.|.|+++ .--.-|
T Consensus 31 ~~iev-fvd------~----~~v~v~pg~tvl-qac~~~gv~ipr------fcyh~rlsvagncrmclvevekspkpva~ 92 (708)
T KOG2282|consen 31 NKIEV-FVD------D----QSVMVEPGTTVL-QACAKVGVDIPR------FCYHERLSVAGNCRMCLVEVEKSPKPVAA 92 (708)
T ss_pred cceEE-EEC------C----eeEeeCCCcHHH-HHHHHhCCCcch------hhhhhhhhhccceeEEEEEeccCCCcchh
Confidence 56887 543 2 578999999999 899999999998 5752 279999999943 334667
Q ss_pred eeceec
Q 031117 129 CQTIVG 134 (165)
Q Consensus 129 CQ~~v~ 134 (165)
|-.-+-
T Consensus 93 campvm 98 (708)
T KOG2282|consen 93 CAMPVM 98 (708)
T ss_pred hccccc
Confidence 766553
No 77
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=62.51 E-value=11 Score=35.30 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=46.7
Q ss_pred EecCChHHHHHHHH-hCCCCccccCcccccCCCceeecccEEE----cCCC-----eEEeeeceeccccCCcceEEEEcC
Q 031117 79 KAISGEKLLRNIML-DNKIELYATYGKVMNCGGGGSCGTCIVE----KPES-----WRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 79 ~v~~G~tLLRdall-~~gi~l~~~~~~~~~CgG~G~CGTC~V~----~~~g-----~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
.+.+.+||| |.|+ +.++-=-.. -|. .|-||.|.|. ..++ +.=||-..+.......-+|||-+.
T Consensus 22 ~v~P~~TlL-d~LR~d~~ltGtKE-----GCA-EGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~L~ 94 (493)
T COG4630 22 DVPPTTTLL-DYLRLDRRLTGTKE-----GCA-EGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLR 94 (493)
T ss_pred cCCcchHHH-HHHHHhcccccccc-----ccc-CCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCceEEEehhhc
Confidence 578999999 9998 555542221 488 7999999998 3344 345888777644444556666443
Q ss_pred --chhHHHHHHH
Q 031117 149 --VEALCSLYRA 158 (165)
Q Consensus 149 --~~~~~~~~~~ 158 (165)
...+|-.-.+
T Consensus 95 ~~~g~LHpVQqa 106 (493)
T COG4630 95 GQDGTLHPVQQA 106 (493)
T ss_pred CCCCCcCHHHHH
Confidence 2235555444
No 78
>PLN02906 xanthine dehydrogenase
Probab=62.24 E-value=6.6 Score=40.91 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=43.4
Q ss_pred hHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCC-----C-----eEEeeeceeccccCCcceEEEEcCc--hh
Q 031117 84 EKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPE-----S-----WRLACQTIVGNKENSGKCRIKYLKV--EA 151 (165)
Q Consensus 84 ~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~-----g-----~RLACQ~~v~~~~~~gDvtVe~~p~--~~ 151 (165)
++|| +.|++.| +.+ -..-|+ .|.||.|.|.+.+ | ..-||-+.+..-....-+|||=+.. ..
T Consensus 2 ~~ll-~~LR~~~--l~g---~k~gC~-~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~ 74 (1319)
T PLN02906 2 QTLL-EYLRDLG--LTG---TKLGCG-EGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDG 74 (1319)
T ss_pred CcHH-HHHHhCC--CCC---CCCCcC-CCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCC
Confidence 5788 8888744 332 122699 6999999999652 3 5678887665443334467766642 35
Q ss_pred HHHHHHHh
Q 031117 152 LCSLYRAV 159 (165)
Q Consensus 152 ~~~~~~~~ 159 (165)
+|.+-.+.
T Consensus 75 ~~~vq~a~ 82 (1319)
T PLN02906 75 LHPVQEAL 82 (1319)
T ss_pred CCHHHHHH
Confidence 66555544
No 79
>PRK01777 hypothetical protein; Validated
Probab=42.59 E-value=50 Score=24.39 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=21.2
Q ss_pred eEEEEecCChHHHHHHHHhCCCCccc
Q 031117 75 VERAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 75 ~~~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
..++++++|.|+- +++...||....
T Consensus 18 ~~~l~vp~GtTv~-dal~~sgi~~~~ 42 (95)
T PRK01777 18 LQRLTLQEGATVE-EAIRASGLLELR 42 (95)
T ss_pred EEEEEcCCCCcHH-HHHHHcCCCccC
Confidence 4678999999977 999999997664
No 80
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=40.42 E-value=27 Score=24.61 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=20.8
Q ss_pred CCCCCCeEEEEecCChHHHHHHH----HhCCCCccc
Q 031117 69 DDGSYPVERAKAISGEKLLRNIM----LDNKIELYA 100 (165)
Q Consensus 69 ~DG~~~~~~v~v~~G~tLLRdal----l~~gi~l~~ 100 (165)
|||.. ..|.+.+|+++. |+| ...|++...
T Consensus 7 Png~~--t~V~vrpg~ti~-d~L~~~c~kr~l~~~~ 39 (72)
T cd01760 7 PNGQR--TVVPVRPGMSVR-DVLAKACKKRGLNPEC 39 (72)
T ss_pred cCCCe--EEEEECCCCCHH-HHHHHHHHHcCCCHHH
Confidence 77764 689999999965 654 456776554
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=38.35 E-value=14 Score=38.02 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=31.3
Q ss_pred hCCCCccccCcccccCCCceeecccEEEcC--CCeEEeeec
Q 031117 93 DNKIELYATYGKVMNCGGGGSCGTCIVEKP--ESWRLACQT 131 (165)
Q Consensus 93 ~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~--~g~RLACQ~ 131 (165)
+.+++.-.++...|.|+-+|.||.|++... +.+.+||--
T Consensus 959 ~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~ 999 (1028)
T PRK06567 959 GENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQ 999 (1028)
T ss_pred cCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecC
Confidence 347777778888999998899999999953 345699976
No 82
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=32.30 E-value=59 Score=23.36 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCCCCCeEEEEecCChHH---HHHHHHhCCCCccc
Q 031117 68 GDDGSYPVERAKAISGEKL---LRNIMLDNKIELYA 100 (165)
Q Consensus 68 ~~DG~~~~~~v~v~~G~tL---LRdall~~gi~l~~ 100 (165)
.|||+- ..|.+.+|++| |-.++...|+.+..
T Consensus 6 LPdg~~--T~V~vrpG~ti~d~L~kllekRgl~~~~ 39 (73)
T cd01817 6 LPDGST--TVVPTRPGESIRDLLSGLCEKRGINYAA 39 (73)
T ss_pred CCCCCe--EEEEecCCCCHHHHHHHHHHHcCCChhH
Confidence 378874 67899999985 32455677887665
No 83
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=32.12 E-value=84 Score=20.79 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCCCCeEEEEecCChHHHHHHHHhCCCCccc
Q 031117 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 69 ~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
|||+ ..+++.|.|.+ |++...+-.+..
T Consensus 6 pdG~----~~~~~~g~T~~-d~A~~I~~~l~~ 32 (60)
T PF02824_consen 6 PDGS----IKELPEGSTVL-DVAYSIHSSLAK 32 (60)
T ss_dssp TTSC----EEEEETTBBHH-HHHHHHSHHHHH
T ss_pred CCCC----eeeCCCCCCHH-HHHHHHCHHHHh
Confidence 6775 56799999988 999987766665
No 84
>smart00455 RBD Raf-like Ras-binding domain.
Probab=30.55 E-value=56 Score=22.62 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCCCCCeEEEEecCChHH---HHHHHHhCCCCccc
Q 031117 69 DDGSYPVERAKAISGEKL---LRNIMLDNKIELYA 100 (165)
Q Consensus 69 ~DG~~~~~~v~v~~G~tL---LRdall~~gi~l~~ 100 (165)
|||.. ..|.+.+|++| |+.++.+.|+++..
T Consensus 7 P~~~~--~~V~vrpg~tl~e~L~~~~~kr~l~~~~ 39 (70)
T smart00455 7 PDNQR--TVVKVRPGKTVRDALAKALKKRGLNPEC 39 (70)
T ss_pred CCCCE--EEEEECCCCCHHHHHHHHHHHcCCCHHH
Confidence 67764 68899999996 43455577887654
No 85
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=26.68 E-value=1e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=17.3
Q ss_pred CCCCCCeEEEEecCChHH---HHHHHHhCCCCccc
Q 031117 69 DDGSYPVERAKAISGEKL---LRNIMLDNKIELYA 100 (165)
Q Consensus 69 ~DG~~~~~~v~v~~G~tL---LRdall~~gi~l~~ 100 (165)
|||.. ..|.+.+|+++ |..++...|+.+..
T Consensus 8 P~~q~--t~V~vrpg~ti~d~L~~~~~kr~L~~~~ 40 (71)
T PF02196_consen 8 PNGQR--TVVQVRPGMTIRDALSKACKKRGLNPEC 40 (71)
T ss_dssp TTTEE--EEEEE-TTSBHHHHHHHHHHTTT--CCC
T ss_pred CCCCE--EEEEEcCCCCHHHHHHHHHHHcCCCHHH
Confidence 67763 67899999995 32344456665544
No 86
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=25.19 E-value=1.3e+02 Score=20.35 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCc
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIEL 98 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l 98 (165)
|..++|++.+. +...++++++|.|+. +.+.+-+++.
T Consensus 2 ~~mm~v~vng~-------~~~~~~~~~~~~tv~-~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGR-------GIEKEIEWRKGMKVA-DILRAVGFNT 37 (70)
T ss_pred ceEEEEEEecc-------ccceEEEcCCCCcHH-HHHHHcCCCC
Confidence 34577877552 123577888999977 8888887754
No 87
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=24.44 E-value=75 Score=23.24 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=18.6
Q ss_pred eEEEEecCChHHHHHHHHhCCCCc
Q 031117 75 VERAKAISGEKLLRNIMLDNKIEL 98 (165)
Q Consensus 75 ~~~v~v~~G~tLLRdall~~gi~l 98 (165)
...+++++|.|+. +|+...|+.-
T Consensus 15 ~~~l~vp~GtTv~-~Ai~~Sgi~~ 37 (84)
T PF03658_consen 15 ILTLEVPEGTTVA-QAIEASGILE 37 (84)
T ss_dssp EEEEEEETT-BHH-HHHHHHTHHH
T ss_pred EEEEECCCcCcHH-HHHHHcCchh
Confidence 4678999999988 9999999863
No 88
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=23.92 E-value=1.2e+02 Score=19.92 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=18.1
Q ss_pred EEEecCChHHHHHHHHhCCCCccc
Q 031117 77 RAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
..++++|.||. ++|...|++...
T Consensus 9 ~~~~~~~~tl~-~lL~~l~~~~~~ 31 (66)
T PRK05659 9 PRELPDGESVA-ALLAREGLAGRR 31 (66)
T ss_pred EEEcCCCCCHH-HHHHhcCCCCCe
Confidence 56788899977 999988886543
No 89
>PRK07440 hypothetical protein; Provisional
Probab=23.00 E-value=1.6e+02 Score=20.11 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCcc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELY 99 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~ 99 (165)
.++|++.+ +.++++++.||. +.|.+.+++..
T Consensus 4 ~m~i~vNG-----------~~~~~~~~~tl~-~lL~~l~~~~~ 34 (70)
T PRK07440 4 PITLQVNG-----------ETRTCSSGTSLP-DLLQQLGFNPR 34 (70)
T ss_pred ceEEEECC-----------EEEEcCCCCCHH-HHHHHcCCCCC
Confidence 47777754 356788899977 88888887644
No 90
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=21.83 E-value=34 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEE
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE 120 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~ 120 (165)
+|+++.++|..-...+.+...|| ..||+|+-.
T Consensus 14 I~~ai~~~g~~s~~~l~~~~~~g--~~CG~C~~~ 45 (64)
T PRK10509 14 IRQAVRQFHPQSFQQLRKFVPVG--NQCGKCIRA 45 (64)
T ss_pred HHHHHHHcCCCCHHHHHHhcCCC--CCccchHHH
Confidence 44777776754223234444566 689999754
No 91
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=20.61 E-value=41 Score=25.57 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=7.8
Q ss_pred eeecccEEE
Q 031117 112 GSCGTCIVE 120 (165)
Q Consensus 112 G~CGTC~V~ 120 (165)
--||||+|.
T Consensus 68 lECGTCRvl 76 (99)
T COG2440 68 LECGTCRVL 76 (99)
T ss_pred eeccceeEe
Confidence 489999997
Done!