Query 031117
Match_columns 165
No_of_seqs 210 out of 1111
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bt6_A Adrenodoxin 1; rutheniu 99.8 1.5E-18 5E-23 126.9 7.8 77 53-146 4-107 (108)
2 3hui_A Ferredoxin; cytochrome 99.8 1.9E-18 6.4E-23 131.9 8.4 78 55-150 19-125 (126)
3 2y5c_A Adrenodoxin-like protei 99.7 2.2E-18 7.6E-23 126.3 7.7 74 58-149 6-107 (109)
4 3lxf_A Ferredoxin; iron, iron- 99.7 2.3E-18 7.8E-23 126.3 7.4 73 59-149 2-103 (104)
5 3n9z_C Adrenodoxin; cytochrome 99.7 2.4E-19 8.3E-24 136.1 -0.1 81 57-152 5-112 (123)
6 3ah7_A [2Fe-2S]ferredoxin; [2F 99.7 9.2E-18 3.1E-22 123.6 7.1 63 76-149 17-103 (113)
7 1uwm_A Ferredoxin VI, FDVI; el 99.7 4.1E-17 1.4E-21 118.7 7.0 76 59-149 2-104 (106)
8 2wlb_A ETP1-FD, electron trans 99.7 6.8E-17 2.3E-21 116.9 8.0 72 57-146 3-102 (103)
9 1xlq_A Putidaredoxin, PDX; [2F 99.7 5.7E-17 2E-21 117.9 7.2 75 59-148 2-103 (106)
10 1i7h_A Ferredoxin; 2Fe-2S,elec 99.7 9.7E-17 3.3E-21 117.9 6.7 63 76-149 17-103 (111)
11 1b9r_A Protein (terpredoxin); 99.7 3.8E-17 1.3E-21 118.6 3.5 76 59-149 2-104 (105)
12 1czp_A Ferredoxin I; [2Fe-2S] 99.6 6E-16 2E-20 111.3 6.6 63 76-151 16-96 (98)
13 1awd_A Ferredoxin; electron tr 99.6 5.9E-16 2E-20 110.5 6.0 63 76-151 12-92 (94)
14 1iue_A Ferredoxin; electron tr 99.6 8.5E-16 2.9E-20 110.6 6.5 64 76-152 14-95 (98)
15 1a70_A Ferredoxin; iron-sulfur 99.6 5.6E-16 1.9E-20 111.4 5.5 64 76-152 14-95 (97)
16 1frd_A Heterocyst [2Fe-2S] fer 99.6 9.9E-16 3.4E-20 109.7 6.7 63 76-151 16-96 (98)
17 1frr_A Ferredoxin I; electron 99.6 8.6E-16 2.9E-20 109.1 6.0 63 76-151 13-93 (95)
18 1wri_A Ferredoxin II, ferredox 99.6 1.3E-15 4.3E-20 108.8 5.3 62 76-151 13-92 (93)
19 1jq4_A Methane monooxygenase c 99.6 5.8E-16 2E-20 111.1 1.5 73 58-149 5-97 (98)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 99.6 5.9E-15 2E-19 105.5 6.5 61 76-145 12-92 (93)
21 1krh_A Benzoate 1,2-dioxygenas 99.4 8.5E-14 2.9E-18 116.8 6.8 61 76-149 16-98 (338)
22 3zyy_X Iron-sulfur cluster bin 99.4 5.7E-14 1.9E-18 131.1 5.6 76 55-151 1-94 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.4 3.3E-14 1.1E-18 108.3 3.2 58 77-147 39-116 (128)
24 2pia_A Phthalate dioxygenase r 99.3 2.8E-12 9.4E-17 107.7 6.6 67 56-145 236-320 (321)
25 2bs2_B Quinol-fumarate reducta 99.0 3.1E-10 1.1E-14 92.3 5.2 89 57-148 6-95 (241)
26 1kf6_B Fumarate reductase iron 99.0 3.1E-10 1.1E-14 92.2 5.1 88 57-148 7-94 (243)
27 2wdq_B Succinate dehydrogenase 98.9 9.5E-10 3.3E-14 89.1 5.3 90 57-149 4-96 (238)
28 3vr8_B Iron-sulfur subunit of 98.8 5.1E-09 1.7E-13 89.2 7.0 92 55-149 35-128 (282)
29 2h88_B Succinate dehydrogenase 98.8 2.4E-09 8.2E-14 88.2 4.8 90 56-148 12-103 (252)
30 1t3q_A Quinoline 2-oxidoreduct 98.4 2.1E-07 7E-12 73.4 4.9 51 76-134 21-73 (168)
31 3c8y_A Iron hydrogenase 1; dit 98.4 5.4E-07 1.8E-11 82.3 6.9 62 76-149 9-77 (574)
32 3i9v_3 NADH-quinone oxidoreduc 98.4 6.3E-07 2.2E-11 84.3 7.5 62 76-149 9-98 (783)
33 1n62_A Carbon monoxide dehydro 98.1 2E-06 7E-11 68.2 4.6 77 76-159 15-94 (166)
34 1rm6_C 4-hydroxybenzoyl-COA re 98.1 2.1E-06 7.1E-11 67.5 4.3 66 76-148 14-80 (161)
35 1ffv_A CUTS, iron-sulfur prote 98.1 3.4E-06 1.2E-10 66.8 4.9 77 76-159 15-93 (163)
36 3hrd_D Nicotinate dehydrogenas 98.0 4E-06 1.4E-10 66.3 4.3 75 76-158 15-92 (160)
37 1vlb_A Aldehyde oxidoreductase 97.1 0.00029 9.9E-09 67.9 4.0 76 76-158 13-91 (907)
38 1dgj_A Aldehyde oxidoreductase 97.0 0.00038 1.3E-08 67.0 3.8 77 76-158 13-91 (907)
39 2w3s_A Xanthine dehydrogenase; 96.9 0.00037 1.3E-08 62.6 2.5 77 76-159 12-95 (462)
40 1y56_A Hypothetical protein PH 95.9 0.011 3.8E-07 51.8 6.2 67 55-134 13-80 (493)
41 3nvw_A Xanthine dehydrogenase/ 95.9 0.0021 7.3E-08 51.0 1.1 75 77-159 16-104 (164)
42 3kwl_A Uncharacterized protein 94.9 0.02 6.9E-07 51.7 4.1 77 57-149 26-104 (514)
43 1ep3_B Dihydroorotate dehydrog 94.1 0.018 6.2E-07 46.2 1.8 43 87-131 206-251 (262)
44 2gag_A Heterotetrameric sarcos 93.7 0.066 2.3E-06 51.3 5.2 75 54-146 19-106 (965)
45 3unc_A Xanthine dehydrogenase/ 83.7 0.68 2.3E-05 46.5 3.6 73 79-159 19-105 (1332)
46 3u7z_A Putative metal binding 80.6 1.7 5.9E-05 31.6 3.9 38 56-100 7-44 (101)
47 3zyv_A AOH1; oxidoreductase, m 58.0 13 0.00043 37.4 5.5 35 80-120 24-58 (1335)
48 2l05_A Serine/threonine-protei 36.7 30 0.001 25.1 3.2 29 56-93 18-46 (95)
49 3ny5_A Serine/threonine-protei 32.8 28 0.00096 25.3 2.6 30 55-93 13-42 (96)
50 1rrb_A RAF-1 RBD, RAF proto-on 31.7 33 0.0011 25.4 2.8 17 76-93 31-47 (107)
51 1wxm_A A-RAF proto-oncogene se 31.1 29 0.00099 24.7 2.4 28 56-92 8-35 (86)
52 1c1y_B Proto-onkogene serine/t 29.1 32 0.0011 23.9 2.3 23 76-99 14-40 (77)
53 2pmv_A Gastric intrinsic facto 26.1 39 0.0013 29.9 2.8 19 75-94 314-332 (399)
54 2l32_A Small archaeal modifier 25.3 76 0.0026 21.0 3.6 35 57-100 2-36 (74)
55 2bb6_A TCII, TC II, transcobal 24.4 88 0.003 27.7 4.8 36 56-95 315-350 (414)
56 3v6c_B Ubiquitin; structural g 23.7 1.2E+02 0.004 19.9 4.4 42 53-100 13-57 (91)
57 1wgd_A Homocysteine-responsive 21.4 1.1E+02 0.0039 20.1 3.9 30 54-87 4-33 (93)
58 2kmm_A Guanosine-3',5'-BIS(dip 21.2 95 0.0033 19.4 3.4 27 69-100 8-34 (73)
No 1
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.76 E-value=1.5e-18 Score=126.94 Aligned_cols=77 Identities=26% Similarity=0.547 Sum_probs=61.1
Q ss_pred CCCCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCcc--ccCcccccCCCceeecccEEE----------
Q 031117 53 PEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELY--ATYGKVMNCGGGGSCGTCIVE---------- 120 (165)
Q Consensus 53 ~~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~--~~~~~~~~CgG~G~CGTC~V~---------- 120 (165)
..| ++|+|.+ +||. .++|++.+|+||| ++|+++||+++ + +|+|.|.||||+|+
T Consensus 4 ~~m--~~V~~~~----~~g~--~~~v~~~~g~tLL-~aa~~~gi~i~~~~------~Cgg~G~CgtC~v~v~~g~~~~l~ 68 (108)
T 2bt6_A 4 GDK--ITVHFIN----RDGE--TLTTKGKIGDSLL-DVVVQNNLDIDGFG------ACEGTLACSTCHLIFEQHIFEKLE 68 (108)
T ss_dssp -CE--EEEEEEC----TTSC--EEEEEEETTCBHH-HHHHHTTCCCTTTT------TTSSSSSBSTTEEECCHHHHTTSC
T ss_pred Cce--EEEEEEC----CCCC--EEEEEECCCChHH-HHHHHcCCCCCccc------CCCCCcCcCCCEEEECccccccCC
Confidence 445 5566664 4564 3789999999999 99999999999 8 79999999999998
Q ss_pred ---------------cCCCeEEeeeceeccccCCcceEEEE
Q 031117 121 ---------------KPESWRLACQTIVGNKENSGKCRIKY 146 (165)
Q Consensus 121 ---------------~~~g~RLACQ~~v~~~~~~gDvtVe~ 146 (165)
+.+|||||||+++.. + ..+++|++
T Consensus 69 ~~~~~E~~~L~~~~~~~~g~rLaCq~~~~~-d-~d~~~V~~ 107 (108)
T 2bt6_A 69 AITDEENDMLDLAYGLTDRSRLGCQICLTK-A-MDNMTVRV 107 (108)
T ss_dssp CCCHHHHHHHTTCTTCCTTEEEGGGCBCCG-G-GTTEEEEC
T ss_pred CCCHHHHHHHhCcccCCCCcEeeEEEEecC-C-CCCEEEEc
Confidence 346899999999961 1 12688875
No 2
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.75 E-value=1.9e-18 Score=131.86 Aligned_cols=78 Identities=23% Similarity=0.453 Sum_probs=64.4
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEE-------------
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE------------- 120 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~------------- 120 (165)
+..++|+|++ +||. .++|++.+|++|| ++|+++||+ +++ .|+|.|.||||+|+
T Consensus 19 ~~M~~Vt~~~----~~G~--~~~v~~~~G~tLL-~aa~~~gi~gi~~------~C~G~G~CgtC~v~v~~G~~~~l~~~~ 85 (126)
T 3hui_A 19 SHMAKINFVD----HTGE--TRTVEVEEGATVM-EAAIRNAIPGVEA------ECGGACACATCHVYVDEAWREKVGGPS 85 (126)
T ss_dssp CSEEEEEEEC----TTSC--EEEEEEETTSBHH-HHHHTTTCTTCCC------TTSSSSCCSTTEEEECGGGHHHHCCCC
T ss_pred CCceEEEEEe----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCcc------CCCCCCCCCCCEEEECCCcccccCCCC
Confidence 3345556765 4664 3789999999999 999999999 999 79999999999998
Q ss_pred ------------cCCCeEEeeeceeccccCCcc---eEEEEcCch
Q 031117 121 ------------KPESWRLACQTIVGNKENSGK---CRIKYLKVE 150 (165)
Q Consensus 121 ------------~~~g~RLACQ~~v~~~~~~gD---vtVe~~p~~ 150 (165)
+.+|||||||+++. +| ++|+++++.
T Consensus 86 ~~E~~~L~~~~e~~~g~RLaCQ~~~~-----~dldgl~V~lp~~~ 125 (126)
T 3hui_A 86 PMEEDMLDFGYDVRPNSRLSCQIKVS-----NELDGLIVTTPERQ 125 (126)
T ss_dssp HHHHHHHTTSSSCCTTEEEGGGCBCC-----GGGTTEEEECCSCC
T ss_pred HHHhhhcCchhhccCCeEEeeeCEEC-----cCCCcEEEEecCcC
Confidence 34789999999996 56 999987653
No 3
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=126.35 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=62.0
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE-----------------
Q 031117 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE----------------- 120 (165)
Q Consensus 58 i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~----------------- 120 (165)
++|+|+. +||. .+++++.+|++|| ++|+++||++++ .|+|.|.||||+|+
T Consensus 6 ~~v~~~~----~~g~--~~~~~~~~g~tlL-~aa~~~gi~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~ 72 (109)
T 2y5c_A 6 VNVVFVD----RSGQ--RIPVSGRVGDNVL-HLAQRHGVDLEG------ACEASLACSTCHVYVSEDHLDLLPPPEERED 72 (109)
T ss_dssp EEEEEEC----TTSC--EEEEEEETTCBHH-HHHHHTTCCCCC------TTSSSSSCCTTEEEECHHHHTTSCCCCHHHH
T ss_pred EEEEEEc----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCc------CCCCCcCcCccEEEECCcchhhcCCCCHHHH
Confidence 5566765 4665 3679999999999 999999999999 79999999999998
Q ss_pred --------cCCCeEEeeeceeccccCCcc---eEEEEcCc
Q 031117 121 --------KPESWRLACQTIVGNKENSGK---CRIKYLKV 149 (165)
Q Consensus 121 --------~~~g~RLACQ~~v~~~~~~gD---vtVe~~p~ 149 (165)
+.+|||||||+++. +| ++|++++.
T Consensus 73 ~~L~~~~~~~~g~rLaCq~~~~-----~d~~~~~v~ip~~ 107 (109)
T 2y5c_A 73 DMLDMAPLLQENSRLGCQIVLT-----PELEGAEFTLPKI 107 (109)
T ss_dssp HHHHTSTTCCTTEEEGGGCBCC-----GGGTTCEEECCSC
T ss_pred HHHhccccCCCCcEeeEEeEEe-----cCCCeEEEEecCC
Confidence 35789999999996 44 99987654
No 4
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.75 E-value=2.3e-18 Score=126.29 Aligned_cols=73 Identities=30% Similarity=0.508 Sum_probs=63.0
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEE-----------------
Q 031117 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE----------------- 120 (165)
Q Consensus 59 ~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~----------------- 120 (165)
+|+|++ +||. .+++++.+|++|| ++|+++|++ +++ .|+|.|.||||+|+
T Consensus 2 ~vt~~~----~~G~--~~~~~~~~g~tll-~a~~~~gi~~i~~------~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~ 68 (104)
T 3lxf_A 2 AILVTT----RDGT--RTEIQAEPGLSLM-EALRDAGIDELLA------LCGGCCSCATCHVLVAPAFADRLPALSGDEN 68 (104)
T ss_dssp EEEEEC----TTSC--EEEEECCTTSBHH-HHHHHTTCTTCCC------TTCSSSSCSTTEEEECGGGGGGSCCCCHHHH
T ss_pred EEEEEe----CCCC--EEEEEECCCChHH-HHHHHcCCCCCCc------CCCCCCCCCCCEEEECCcccccCCCCCHHHH
Confidence 466776 5675 4789999999999 999999999 999 79999999999998
Q ss_pred --------cCCCeEEeeeceeccccCCcc---eEEEEcCc
Q 031117 121 --------KPESWRLACQTIVGNKENSGK---CRIKYLKV 149 (165)
Q Consensus 121 --------~~~g~RLACQ~~v~~~~~~gD---vtVe~~p~ 149 (165)
+.+|||||||+++. +| ++|+++++
T Consensus 69 ~~L~~~~~~~~g~rLaCq~~~~-----~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 69 DLLDSSDHRTPHSRLSCQITIN-----DKLEGLEVEIAPE 103 (104)
T ss_dssp HHHHTSTTCCTTEEEGGGCBCC-----GGGTTCEEEECCC
T ss_pred HHhccccccCCCcEEEeeCEEc-----cCCCCEEEEecCC
Confidence 34689999999996 66 99998764
No 5
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.73 E-value=2.4e-19 Score=136.13 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=17.4
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCcc--ccCcccccCCCceeecccEEE--------------
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELY--ATYGKVMNCGGGGSCGTCIVE-------------- 120 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~--~~~~~~~~CgG~G~CGTC~V~-------------- 120 (165)
.++|+|++ +||.. ++|++..|++|| ++|+++||+++ + +|+|.|.||||+|+
T Consensus 5 ~v~Vtf~~----~~G~~--~~v~~~~G~tLl-~aa~~~gi~i~g~~------~CgG~g~CgtC~v~v~~~~~~~l~~~~~ 71 (123)
T 3n9z_C 5 KITVHFIN----RDGET--LTTKGKVGDSLL-DVVVENNLDIDGFG------ACEGTLACSTCHLIFEDHIYEKLDAITD 71 (123)
T ss_dssp ---------------------------------------------C------TTCSSSSCSTTBC--------------C
T ss_pred cEEEEEEe----CCCCE--EEEEECCCCcHH-HHHHHcCCCCCcCC------CCCCCCEeCCCeeEEeccccccCCCCCh
Confidence 35666776 56643 688999999999 99999999998 7 79999999999997
Q ss_pred -----------cCCCeEEeeeceeccccCCcceEEEEcCchhH
Q 031117 121 -----------KPESWRLACQTIVGNKENSGKCRIKYLKVEAL 152 (165)
Q Consensus 121 -----------~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~~ 152 (165)
+.++||||||+++. .+ ..|++|++++...-
T Consensus 72 ~E~~~L~~~~~~~~~~RLaCQ~~v~-~~-ld~l~V~ip~~~~~ 112 (123)
T 3n9z_C 72 EENDMLDLAYGLTDRSRLGCQICLT-KS-MDNMTVRVPETVAD 112 (123)
T ss_dssp HHHHHHCC--------CBCC-----------------------
T ss_pred HHHhhhcccccccCCeEEeeEeEEc-cC-CCCEEEEECccccc
Confidence 34679999999996 11 13899998776543
No 6
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.72 E-value=9.2e-18 Score=123.56 Aligned_cols=63 Identities=29% Similarity=0.494 Sum_probs=55.6
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------------cCCCeEEeeec
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------------KPESWRLACQT 131 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------------~~~g~RLACQ~ 131 (165)
+++++.+|+||| ++|+++||++++ .|+|.|.||+|+|+ +.+|||||||+
T Consensus 17 ~~v~~~~g~tlL-~aa~~~Gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~g~rLaCq~ 89 (113)
T 3ah7_A 17 LTVEVKPGTNIL-ELAHDHHIEMES------ACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEAQSRLGCQV 89 (113)
T ss_dssp EEEECCTTCBHH-HHHHHTTCCCCC------TTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCCTTEEEGGGC
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccCCCcEEeeeC
Confidence 689999999999 999999999999 79999999999998 13578999999
Q ss_pred eeccccCCcceEEEEcCc
Q 031117 132 IVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 132 ~v~~~~~~gDvtVe~~p~ 149 (165)
++. .+|++|+++++
T Consensus 90 ~~~----~~dl~v~~~~~ 103 (113)
T 3ah7_A 90 FVA----DEDLTIEIPKY 103 (113)
T ss_dssp BCC----SSCEEEECCSC
T ss_pred EEe----CCCEEEEECch
Confidence 995 36999987654
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.69 E-value=4.1e-17 Score=118.65 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=60.7
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEE-----------------
Q 031117 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE----------------- 120 (165)
Q Consensus 59 ~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~----------------- 120 (165)
+|+|+. ++|. .+++++.+|+||| ++|+++||+ +++ .|+|.|.||||+|+
T Consensus 2 ~v~~~~----~~g~--~~~~~~~~g~tlL-~aa~~~gi~~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~ 68 (106)
T 1uwm_A 2 KIIFIE----HNGT--RHEVEAKPGLTVM-EAARDNGVPGIDA------DCGGACACSTCHAYVDPAWVDKLPKALPTET 68 (106)
T ss_dssp EEEEEC----TTCC--EEEEECCTTSBHH-HHHHTTTCTTCCC------TTSSSSSSCTTEEEECHHHHTTSCCCCHHHH
T ss_pred EEEEEe----CCCC--EEEEEECCCCcHH-HHHHHcCCCCccc------CCCCCCCcCcCEEEECCcccccCCCCCHHHH
Confidence 455654 4564 3689999999999 999999999 999 79999999999998
Q ss_pred --------cC-CCeEEeeeceeccccCCcceEEEEcCc
Q 031117 121 --------KP-ESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 121 --------~~-~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
+. +|||||||+++.. +. .+++|+++++
T Consensus 69 ~~L~~~~~~~~~g~rLaCq~~~~~-d~-~~l~v~~p~~ 104 (106)
T 1uwm_A 69 DMIDFAYEPNPATSRLTCQIKVTS-LL-DGLVVHLPEK 104 (106)
T ss_dssp HHHTTSSSCCTTTEEEGGGCBCCG-GG-TTEEEECCSC
T ss_pred HHhcCccccCCCCcEecccCEEcc-CC-CCEEEEecCC
Confidence 23 7899999999961 00 1699987653
No 8
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=6.8e-17 Score=116.95 Aligned_cols=72 Identities=28% Similarity=0.550 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE----------------
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~---------------- 120 (165)
+++|+|.+ ++|. .+++++.+|++|| ++|+++|+++++ .|+|.|.||+|+|+
T Consensus 3 ~~~v~~~~----~~g~--~~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E 69 (103)
T 2wlb_A 3 GIKVFFVT----PEGR--EIMIEGNEGDSIL-DLAHANNIDLEG------ACEGSVACSTCHVIVDPEHYELLDPPEEDE 69 (103)
T ss_dssp CEEEEEEC----TTCC--EEEEEECTTCBHH-HHHHHTTCCCCC------TTTTSSCCSTTEEEECHHHHHHSCCCCHHH
T ss_pred ceEEEEEe----CCCC--EEEEEECCCCHHH-HHHHHcCCCcCc------CCCCCCCcCCCEEEECCCchhccCCCCHHH
Confidence 46677764 3554 3689999999999 999999999999 79999999999998
Q ss_pred ---------cCCCeEEeeeceeccccCCcc---eEEEE
Q 031117 121 ---------KPESWRLACQTIVGNKENSGK---CRIKY 146 (165)
Q Consensus 121 ---------~~~g~RLACQ~~v~~~~~~gD---vtVe~ 146 (165)
+.+|||||||+++. +| ++|++
T Consensus 70 ~~~L~~~~~~~~g~rLaCq~~~~-----~d~~~l~v~l 102 (103)
T 2wlb_A 70 EDMLDLAFGLEETSRLGCQVLLR-----KDLDGIRVRI 102 (103)
T ss_dssp HHHHTTBTTCCTTEEEGGGCBCC-----GGGTTEEEEC
T ss_pred HHHHhcccCCCCCcEeeEeeEeC-----CCCCcEEEEc
Confidence 23679999999996 67 88875
No 9
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.68 E-value=5.7e-17 Score=117.89 Aligned_cols=75 Identities=27% Similarity=0.519 Sum_probs=60.0
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEE-----------------
Q 031117 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE----------------- 120 (165)
Q Consensus 59 ~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~----------------- 120 (165)
+|+|+. +||. .+++++.+|+||| ++|+++||+ +++ .|+|.|.||||+|+
T Consensus 2 ~V~~~~----~~g~--~~~~~~~~g~tlL-eaa~~~gi~~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~ 68 (106)
T 1xlq_A 2 KVVYVS----HDGT--RRELDVADGVSLM-QAAVSNGIYDIVG------DCGGSASCATCHVYVNEAFTDKVPAANEREI 68 (106)
T ss_dssp EEEEEC----TTSC--EEEEECCTTCBHH-HHHHHTTCTTSCC------TTCSSSSSCTTEEEECTTTGGGSCCCCHHHH
T ss_pred EEEEEe----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCCc------CCCCCcccCcCEEEECCcccccCCCCCHHHH
Confidence 345644 4564 3689999999999 999999999 999 79999999999998
Q ss_pred --------c-CCCeEEeeeceeccccCCcceEEEEcC
Q 031117 121 --------K-PESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 121 --------~-~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+ .+|||||||+++.. +. .+++|++++
T Consensus 69 ~~L~~~~~~~~~g~rLaCq~~~~~-d~-~~l~v~~p~ 103 (106)
T 1xlq_A 69 GMLESVTAELKPNSRLCCQIIMTP-EL-DGIVVDVPD 103 (106)
T ss_dssp HHHTTCSSCCCTTEEEGGGCBCCG-GG-TTEEEECCS
T ss_pred HHhhcccccCCCCcEeeeeeEeec-CC-CCEEEEecC
Confidence 2 56799999999961 00 169998654
No 10
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.66 E-value=9.7e-17 Score=117.92 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=55.0
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------------cCCCeEEeeec
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------------KPESWRLACQT 131 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------------~~~g~RLACQ~ 131 (165)
+++++.+|++|| ++|+++|+++++ .|+|.|.||+|+|+ +.+++|||||+
T Consensus 17 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~g~rLaCq~ 89 (111)
T 1i7h_A 17 AVLEANSGETIL-DAALRNGIEIEH------ACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQA 89 (111)
T ss_dssp EEEECCTTCBHH-HHHHHTTCCCCC------TTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTC
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCcc------cCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCCCcEEEEEE
Confidence 689999999999 999999999999 79889999999998 11479999999
Q ss_pred eeccccCCcceEEEEcCc
Q 031117 132 IVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 132 ~v~~~~~~gDvtVe~~p~ 149 (165)
++. .+|++|+++++
T Consensus 90 ~~~----~~dl~v~~~~~ 103 (111)
T 1i7h_A 90 RVT----DEDLVVEIPRY 103 (111)
T ss_dssp BCC----SSCEEEECCSC
T ss_pred EEe----CCCEEEEEChH
Confidence 994 37999987653
No 11
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.65 E-value=3.8e-17 Score=118.64 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=60.1
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEEc----------------
Q 031117 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVEK---------------- 121 (165)
Q Consensus 59 ~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~~---------------- 121 (165)
+|+|+. ++|. .+++++.+|+||| ++|+++||+ +++ .|+|.|.||||+|++
T Consensus 2 ~V~~~~----~~g~--~~~~~~~~g~tlL-~aa~~~gi~~i~~------~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~ 68 (105)
T 1b9r_A 2 RVVFID----EQSG--EYAVDAQDGQSLM-EVATQNGVPGIVA------ECGGSCVCATCRIEIEDAWVEIVGEANPDEN 68 (105)
T ss_dssp EEEECC----TTTS--CEEEECCTTCCTT-HHHHHHTCCCCCC------SSTTSSCCCCCCCEECTTTHHHHTCCCTTHH
T ss_pred EEEEEe----CCCC--EEEEEECCCChHH-HHHHHcCCCCcCc------CCCCCCCcCcCEEEECCcccccCCCCCHHHH
Confidence 455654 4554 2689999999999 999999999 999 799999999999982
Q ss_pred ----------CCCeEEeeeceeccccCCcceEEEEcCc
Q 031117 122 ----------PESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 122 ----------~~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
.+|||||||+++.. + ..|++|+++++
T Consensus 69 ~~L~~~~~~~~~g~rLaCq~~~~~-~-~~~l~v~~p~~ 104 (105)
T 1b9r_A 69 DLLQSTGEPMTAGTRLSCQVFIDP-S-MDGLIVRVPLP 104 (105)
T ss_dssp HHHHTSCCCCCTTBSCGGGCCCCT-T-STTEEEECCSC
T ss_pred HHhhcccccCCCCcEeeeeCEecC-C-CCcEEEEecCC
Confidence 24589999999961 1 01799987653
No 12
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.62 E-value=6e-16 Score=111.25 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=56.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc------------------CCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 16 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 84 (98)
T 1czp_A 16 HEIEVPDDEYIL-DAAEEQGYDLPF------SCR-AGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPT--- 84 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCCHH-HHHHHcCCCccC------CCC-CCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEEC---
Confidence 688999999999 999999999999 798 89999999982 3679999999996
Q ss_pred CCcceEEEEcCchh
Q 031117 138 NSGKCRIKYLKVEA 151 (165)
Q Consensus 138 ~~gDvtVe~~p~~~ 151 (165)
+|++|++++++.
T Consensus 85 --~d~~v~~~~~~~ 96 (98)
T 1czp_A 85 --SDVVIQTHKEED 96 (98)
T ss_dssp --SCEEEECCCTTT
T ss_pred --CCEEEEeccccc
Confidence 899999877654
No 13
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.61 E-value=5.9e-16 Score=110.53 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=56.3
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc------------------CCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 80 (94)
T 1awd_A 12 ETIECPEDTYIL-DAAEEAGLDLPY------SCR-AGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT--- 80 (94)
T ss_dssp EEEECCTTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC---
Confidence 688999999999 999999999999 798 89999999982 3679999999996
Q ss_pred CCcceEEEEcCchh
Q 031117 138 NSGKCRIKYLKVEA 151 (165)
Q Consensus 138 ~~gDvtVe~~p~~~ 151 (165)
+|++|++.++++
T Consensus 81 --~d~~i~~~~~~~ 92 (94)
T 1awd_A 81 --SDVTILTHQEAA 92 (94)
T ss_dssp --SCEEEECCCGGG
T ss_pred --CCEEEEecchhc
Confidence 899999877654
No 14
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.61 E-value=8.5e-16 Score=110.65 Aligned_cols=64 Identities=27% Similarity=0.511 Sum_probs=57.0
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~ 137 (165)
+++++++|++|| ++|+++|+++++ .|+ .|.||+|+|+ +++|+|||||+++.
T Consensus 14 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 82 (98)
T 1iue_A 14 KKIECNEDEYIL-DASERQNVELPY------SCR-GGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPK--- 82 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSC-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEEC---
Confidence 688999999999 999999999999 798 8999999998 23679999999996
Q ss_pred CCcceEEEEcCchhH
Q 031117 138 NSGKCRIKYLKVEAL 152 (165)
Q Consensus 138 ~~gDvtVe~~p~~~~ 152 (165)
+|++|++.++..+
T Consensus 83 --~d~~i~~~~~~~~ 95 (98)
T 1iue_A 83 --SDCVIETHKEDEL 95 (98)
T ss_dssp --SCEEEECCCHHHH
T ss_pred --CCeEEEeCChHhh
Confidence 8999998877654
No 15
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.61 E-value=5.6e-16 Score=111.39 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=56.4
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc------------------CCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 14 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 82 (97)
T 1a70_A 14 VEFQCPDDVYIL-DAAEEEGIDLPY------SCR-AGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPV--- 82 (97)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEEC---
Confidence 688999999999 999999999999 798 89999999982 2569999999996
Q ss_pred CCcceEEEEcCchhH
Q 031117 138 NSGKCRIKYLKVEAL 152 (165)
Q Consensus 138 ~~gDvtVe~~p~~~~ 152 (165)
+|++|+++++.++
T Consensus 83 --~d~~v~~~~~~~~ 95 (97)
T 1a70_A 83 --SDVTIETHKKEEL 95 (97)
T ss_dssp --SCEEEECCCGGGC
T ss_pred --CCEEEEeCchhhc
Confidence 8999998776543
No 16
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.61 E-value=9.9e-16 Score=109.71 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=56.0
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc------------------CCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~ 137 (165)
+++++++|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 16 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~--- 84 (98)
T 1frd_A 16 TTIEIDEETTIL-DGAEENGIELPF------SCH-SGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPR--- 84 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEEC---
Confidence 688999999999 999999999999 798 89999999993 1569999999996
Q ss_pred CCcceEEEEcCchh
Q 031117 138 NSGKCRIKYLKVEA 151 (165)
Q Consensus 138 ~~gDvtVe~~p~~~ 151 (165)
+|++|++.++.+
T Consensus 85 --~d~~v~~~~~~~ 96 (98)
T 1frd_A 85 --SNCTIKTHQEPY 96 (98)
T ss_dssp --SSEEEECCCGGG
T ss_pred --CCEEEEecchhh
Confidence 899999877654
No 17
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.60 E-value=8.6e-16 Score=109.09 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=55.9
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc------------------CCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 13 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~--- 81 (95)
T 1frr_A 13 FTLDVPEGTTIL-DAAEEAGYDLPF------SCR-AGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE--- 81 (95)
T ss_dssp EEEEECTTCCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC---
Confidence 688999999999 999999999999 798 89999999993 2569999999996
Q ss_pred CCcceEEEEcCchh
Q 031117 138 NSGKCRIKYLKVEA 151 (165)
Q Consensus 138 ~~gDvtVe~~p~~~ 151 (165)
+|++|++.++..
T Consensus 82 --~~~~v~~~~~~~ 93 (95)
T 1frr_A 82 --SDLVIETHKEEE 93 (95)
T ss_dssp --SCEEEECCCTTT
T ss_pred --CCEEEEEcchhh
Confidence 899999877654
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.58 E-value=1.3e-15 Score=108.81 Aligned_cols=62 Identities=24% Similarity=0.470 Sum_probs=55.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE------------------cCCCeEEeeeceecccc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~ 137 (165)
+++++.+|++|| ++|+++| ++++ .|+ .|.||+|+|+ +.+|||||||+++.
T Consensus 13 ~~~~~~~g~tlL-~a~~~~g-~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~--- 80 (93)
T 1wri_A 13 ITFDVEPGERLI-DIGSEKA-DLPL------SCQ-AGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE--- 80 (93)
T ss_dssp EEEEECTTSCHH-HHHHHHS-CCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES---
T ss_pred EEEEECCCCcHH-HHHHHCc-CCCC------CCC-CCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC---
Confidence 688999999999 9999999 9999 798 8999999998 23689999999996
Q ss_pred CCcceEEEEcCchh
Q 031117 138 NSGKCRIKYLKVEA 151 (165)
Q Consensus 138 ~~gDvtVe~~p~~~ 151 (165)
+|++|+++++++
T Consensus 81 --~d~~v~~~~~~~ 92 (93)
T 1wri_A 81 --SDVVIETHKEDE 92 (93)
T ss_dssp --SCEEEECCCGGG
T ss_pred --CCEEEEeccccc
Confidence 899999877654
No 19
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.56 E-value=5.8e-16 Score=111.14 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=58.5
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcC---------------
Q 031117 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP--------------- 122 (165)
Q Consensus 58 i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~--------------- 122 (165)
++|+|.. +||. .+++++.+|++|| ++|+++|+++++ .| |.|.||+|+|++.
T Consensus 5 ~~v~~~~----~~~~--~~~~~~~~g~tlL-~a~~~~gi~i~~------~C-~~G~Cg~C~v~v~~G~~~~~~~e~~~L~ 70 (98)
T 1jq4_A 5 HTITAVT----EDGE--SLRFECRSDEDVI-TAALRQNIFLMS------SC-REGGCATCKALCSEGDYDLKGCSVQALP 70 (98)
T ss_dssp EEEEEEE----TTTE--EEEEEEESCCTHH-HHHHHHTCCCCC------SC-CSSCCCCCCBCEEECCCCCCCSCTTTSC
T ss_pred EEEEEEe----cCCC--cEEEEeCCCChHH-HHHHHcCCCCcC------CC-CCCCCCCCEEEEEcCccccCcccccccC
Confidence 5566654 2332 3688999999999 999999999999 79 6899999999821
Q ss_pred -----CCeEEeeeceeccccCCcceEEEEcCc
Q 031117 123 -----ESWRLACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 123 -----~g~RLACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
+|+|||||+++. +|++|+++++
T Consensus 71 ~~~~~~g~~LaCq~~~~-----~d~~v~~~~~ 97 (98)
T 1jq4_A 71 PEEEEEGLVLLCRTYPK-----TDLEIELPYT 97 (98)
T ss_dssp HHHHHHHCBCTTTCCSS-----CCSEEECSCC
T ss_pred HHHhcCCcEEEeeCEEC-----CCEEEEecCC
Confidence 258999999996 8999987543
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.55 E-value=5.9e-15 Score=105.47 Aligned_cols=61 Identities=25% Similarity=0.546 Sum_probs=51.6
Q ss_pred EEEEecCChHHHHHHHHhCCCC-ccccCcccccCCCceeecccEEE-------------------cCCCeEEeeeceecc
Q 031117 76 ERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE-------------------KPESWRLACQTIVGN 135 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~-l~~~~~~~~~CgG~G~CGTC~V~-------------------~~~g~RLACQ~~v~~ 135 (165)
+++++.+|++|| ++|+++|++ +++ .|+|.|.||+|+|+ +.+|||||||+++.
T Consensus 12 ~~~~~~~g~tll-~a~~~~gi~gi~~------~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaCq~~~~- 83 (93)
T 1l5p_A 12 KQLKFEDDQTLF-TVLTEAGLMSADD------TCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLS- 83 (93)
T ss_dssp EEEECCTTEEHH-HHHHTTTSSCCTT------SCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEEC-
T ss_pred EEEEECCCChHH-HHHHHcCCCcCCc------CCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEeeECEEC-
Confidence 688999999999 999999999 999 79999999999998 25679999999996
Q ss_pred ccCCcceEEE
Q 031117 136 KENSGKCRIK 145 (165)
Q Consensus 136 ~~~~gDvtVe 145 (165)
.+. ..++|+
T Consensus 84 ~d~-~g~~v~ 92 (93)
T 1l5p_A 84 GEN-DGAVFE 92 (93)
T ss_dssp GGG-TTCEEE
T ss_pred CCC-CceEEE
Confidence 232 235554
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.45 E-value=8.5e-14 Score=116.78 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=54.3
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcC----------------------CCeEEeeecee
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP----------------------ESWRLACQTIV 133 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~----------------------~g~RLACQ~~v 133 (165)
+++++.+|+||| ++|+++|+++++ .|+ .|.||+|+|++. +|+|||||+++
T Consensus 16 ~~~~~~~g~tll-~a~~~~gi~i~~------~C~-~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~ 87 (338)
T 1krh_A 16 RFICIAQGETLS-DAAYRQQINIPM------DCR-EGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87 (338)
T ss_dssp EEEEECTTCCHH-HHHHHTTCCCSC------SCS-SSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEE
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEE
Confidence 789999999999 999999999999 798 899999999831 35799999999
Q ss_pred ccccCCcceEEEEcCc
Q 031117 134 GNKENSGKCRIKYLKV 149 (165)
Q Consensus 134 ~~~~~~gDvtVe~~p~ 149 (165)
. +|++|++.++
T Consensus 88 ~-----~~~~v~~~~~ 98 (338)
T 1krh_A 88 T-----SDAVFQIQAS 98 (338)
T ss_dssp S-----SSEEEEESSC
T ss_pred C-----CCeEEEEecc
Confidence 6 8999998665
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.44 E-value=5.7e-14 Score=131.07 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE--------------
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~-------------- 120 (165)
|...+|+|. ++| +++++++|++|| ++++++|+++++ .|+|.|.||||+|+
T Consensus 1 M~m~~V~~~-----~sg----~~v~v~~G~tLL-eAa~~aGi~ip~------~C~G~G~CGtC~v~V~~G~v~~~e~~~L 64 (631)
T 3zyy_X 1 MAEYKVLFK-----PDQ----KEVAISENTNLM-EALNLAGINIKT------VCGGAGTCGKCLVRVVDGQKRVESYGKL 64 (631)
T ss_dssp --CEEEEEE-----TTT----EEEEECTTSCHH-HHHHHHTCCCCC------SCCCSSCCSTTEEEEEESCEEESCCTTC
T ss_pred CCceEEEEe-----cCC----eEEEECCCCcHH-HHHHHcCCCCCc------CCCCCCcCCCCEEEEeeCcccccccccC
Confidence 334556664 344 689999999999 999999999999 79999999999998
Q ss_pred ----cCCCeEEeeeceeccccCCcceEEEEcCchh
Q 031117 121 ----KPESWRLACQTIVGNKENSGKCRIKYLKVEA 151 (165)
Q Consensus 121 ----~~~g~RLACQ~~v~~~~~~gDvtVe~~p~~~ 151 (165)
+.+|+||+||+++. +|++|+++++++
T Consensus 65 s~~e~~~G~rLaCqa~~~-----sDl~Ielp~~~~ 94 (631)
T 3zyy_X 65 KQEEIAQGYVLACQTYPE-----SDLIIEIPFDSR 94 (631)
T ss_dssp CHHHHHTTEEETTTEEEC-----SSEEEECCTTSS
T ss_pred CHHHhcCCcEEeeeCEEC-----CCEEEEecchhh
Confidence 34689999999996 899999887765
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.44 E-value=3.3e-14 Score=108.33 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=51.1
Q ss_pred EEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE-------------------cCCCeEEeeeceecccc
Q 031117 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------------KPESWRLACQTIVGNKE 137 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~-------------------~~~g~RLACQ~~v~~~~ 137 (165)
++++.+|++|| ++|+++|+++++ .| |.|.||+|+|+ ..+|+|||||+++.
T Consensus 39 ~v~v~~g~tlL-~aa~~~Gi~i~~------~C-~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq~~~~--- 107 (128)
T 1doi_A 39 SLEVNEGEYIL-EAAEAQGYDWPF------SC-RAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPD--- 107 (128)
T ss_dssp EEECCTTSCHH-HHHHHTTCCCCC------SS-SSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGEEEC---
T ss_pred EEEECCCCcHH-HHHHHcCCCCcc------CC-CccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEEeEEc---
Confidence 78999999999 999999999999 79 58999999998 25789999999996
Q ss_pred CCcc-eEEEEc
Q 031117 138 NSGK-CRIKYL 147 (165)
Q Consensus 138 ~~gD-vtVe~~ 147 (165)
+| ++|+..
T Consensus 108 --~d~i~i~~~ 116 (128)
T 1doi_A 108 --ADEVKIVYN 116 (128)
T ss_dssp --SSEEEEEEC
T ss_pred --CCeEEEEec
Confidence 66 777653
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.30 E-value=2.8e-12 Score=107.69 Aligned_cols=67 Identities=15% Similarity=0.426 Sum_probs=55.9
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE---------------
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------- 120 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~--------------- 120 (165)
..++|+|. ++| +++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|+
T Consensus 236 ~~~~v~~~-----~~~----~~~~~~~~~~ll-~a~~~~g~~~~~------~C~-~G~Cg~C~~~v~~G~~~~~~~~l~~ 298 (321)
T 2pia_A 236 TPFTVRLS-----RSG----TSFEIPANRSIL-EVLRDANVRVPS------SCE-SGTCGSCKTALCSGEADHRDMVLRD 298 (321)
T ss_dssp CCEEEEET-----TTC----CEEEECTTSCHH-HHHHHTTCCCCC------SCS-SSSSCTTEEEEEESCEECCCSSCCT
T ss_pred ccEEEEEe-----CCC----eEEEECCCCcHH-HHHHHcCCCCCC------CCC-CCCCCCCEEEEecCccccccCCCCh
Confidence 45777773 233 478999999999 999999999999 795 8999999998
Q ss_pred --cCCCeEEeeeceeccccCCcc-eEEE
Q 031117 121 --KPESWRLACQTIVGNKENSGK-CRIK 145 (165)
Q Consensus 121 --~~~g~RLACQ~~v~~~~~~gD-vtVe 145 (165)
+ +|++|+||+++. +| ++|+
T Consensus 299 ~e~-~g~~L~C~~~~~-----~d~~~i~ 320 (321)
T 2pia_A 299 DEK-GTQIMVCVSRAK-----SAELVLD 320 (321)
T ss_dssp TTT-TTEEETTTCEES-----SSEEEEC
T ss_pred HHH-CCeEEEeEeEEC-----CCcEEEe
Confidence 2 689999999996 66 8875
No 25
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.99 E-value=3.1e-10 Score=92.31 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=67.6
Q ss_pred cEEEEEecCCCC-CCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceecc
Q 031117 57 EIELEFIAPRAG-DDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (165)
Q Consensus 57 ~i~v~f~~p~~~-~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~ 135 (165)
+++|.+.+|..+ ..+.+..+++++.+|++|| ++|++.|+.+..++.+...|+ .|.||+|.|+++...+|||++.+.+
T Consensus 6 ~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL-~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~~~~ 83 (241)
T 2bs2_B 6 TIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIF-IVLNMIRETYDPDLNFDFVCR-AGICGSCGMMINGRPSLACRTLTKD 83 (241)
T ss_dssp EEEEEECCTTCTTCCCEEEEEEEECCTTCBHH-HHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEETTEEEEGGGCBGGG
T ss_pred EEEEEEeCCCCCCCCceEEEEEEeCCCCChHH-HHHHHhchhcCCCCccCCCCC-CCCCCCCEeEECCCeecchhCcHhH
Confidence 567777776554 4456778899999999999 999988765444455566897 7999999999976679999999973
Q ss_pred ccCCcceEEEEcC
Q 031117 136 KENSGKCRIKYLK 148 (165)
Q Consensus 136 ~~~~gDvtVe~~p 148 (165)
.. .+.++|+.++
T Consensus 84 ~~-g~~~~ie~l~ 95 (241)
T 2bs2_B 84 FE-DGVITLLPLP 95 (241)
T ss_dssp CT-TSEEEEECCT
T ss_pred cC-CCeEEEecCC
Confidence 32 1348888765
No 26
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.99 E-value=3.1e-10 Score=92.23 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=68.0
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+|+|.+.+|+.+....+..+++++++|+||| ++|+++|+.....+...-.| +.|.||+|.|+++...+|||++.+.+.
T Consensus 7 ~~~i~R~~~~~~~~~~~~~~~~~~~~~~tll-~al~~~~~~~~p~l~~~~~c-~~G~Cg~C~v~v~G~~~~aC~~~~~~~ 84 (243)
T 1kf6_B 7 KIEVVRYNPEVDTAPHSAFYEVPYDATTSLL-DALGYIKDNLAPDLSYRWSC-RMAICGSCGMMVNNVPKLACKTFLRDY 84 (243)
T ss_dssp EEEEEECCTTTCSSCEEEEEEEEECTTCBHH-HHHHHHHHHTCTTCCCCCCC-SSSSSCCCEEEETTEEEEGGGCBGGGC
T ss_pred EEEEEEcCCCCCCCCeeEEEEEecCCCChHH-HHHHHcCcccCCCcccccCC-CCCcCCCCEeEECCEEEeeeeeEHhhC
Confidence 5777777776655567788899999999999 99999996633335556689 489999999998877899999999622
Q ss_pred cCCcceEEEEcC
Q 031117 137 ENSGKCRIKYLK 148 (165)
Q Consensus 137 ~~~gDvtVe~~p 148 (165)
. +.++|+.++
T Consensus 85 ~--~~~~i~~l~ 94 (243)
T 1kf6_B 85 T--DGMKVEALA 94 (243)
T ss_dssp T--TCEEEECCT
T ss_pred C--CcEEEEecC
Confidence 1 238887654
No 27
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.92 E-value=9.5e-10 Score=89.11 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecC--ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceec
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAIS--GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVG 134 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~--G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~ 134 (165)
+|+|.+.+|+.+....+..+++++++ |+||| ++|++.++. ...+++...|+ .|.||.|.|.++...+|||++.+.
T Consensus 4 ~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll-~~l~~~~~~-~~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~ 80 (238)
T 2wdq_B 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLL-DALIQLKEK-DPSLSFRRSCR-EGVCGSDGLNMNGKNGLACITPIS 80 (238)
T ss_dssp EEEEEECCTTTCSSCEEEEEEEECCTTCCCBHH-HHHHHHHHH-CTTCCCCCSSS-SSSSCTTEEEETTEEEEGGGCBGG
T ss_pred EEEEEEcCCCCCCCCceEEEEeecCCCCCChHH-HHHHHhccc-CCCccccccCC-CCCCCCCEEEECCEEEcccccchh
Confidence 46777777765555667788899999 99999 999999866 33466677897 799999999997778899999997
Q ss_pred c-ccCCcceEEEEcCc
Q 031117 135 N-KENSGKCRIKYLKV 149 (165)
Q Consensus 135 ~-~~~~gDvtVe~~p~ 149 (165)
+ ....+.++|+.+..
T Consensus 81 ~~g~~~~~~~ie~l~~ 96 (238)
T 2wdq_B 81 ALNQPGKKIVIRPLPG 96 (238)
T ss_dssp GTCCTTSCEEEECCTT
T ss_pred hhccCCCCEEEeeCCC
Confidence 4 12123588887653
No 28
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=98.83 E-value=5.1e-09 Score=89.24 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCcEEEEEecCCC-CCCCCCCeEEEEecC-ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeece
Q 031117 55 KPEIELEFIAPRA-GDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (165)
Q Consensus 55 ~p~i~v~f~~p~~-~~DG~~~~~~v~v~~-G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~ 132 (165)
+-+++|.+.+|+. +....+..++|++.+ |++|| ++|++.+..+...+++.-.|+ .|.||.|.|.++...+|||.+.
T Consensus 35 ~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlL-daL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~InG~~~laC~t~ 112 (282)
T 3vr8_B 35 IKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVL-DALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIAGENTLACICN 112 (282)
T ss_pred eEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHH-HHHHhcCcccCCceeecCCCC-CCCCCCCEEEECCEEecchhhh
Confidence 3567777888763 334666778899988 99999 999998887665567777899 5999999999988889999999
Q ss_pred eccccCCcceEEEEcCc
Q 031117 133 VGNKENSGKCRIKYLKV 149 (165)
Q Consensus 133 v~~~~~~gDvtVe~~p~ 149 (165)
+.+.. .+.++|+.++.
T Consensus 113 v~~~~-~~~~tIepL~~ 128 (282)
T 3vr8_B 113 IDQNT-SKTTKIYPLPH 128 (282)
T ss_pred HhHhc-CCcEEeccCCC
Confidence 86322 24678887764
No 29
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.83 E-value=2.4e-09 Score=88.16 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCCC-CCCCCeEEEEecC-ChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeecee
Q 031117 56 PEIELEFIAPRAGD-DGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (165)
Q Consensus 56 p~i~v~f~~p~~~~-DG~~~~~~v~v~~-G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v 133 (165)
=+|+|.+.+|+.+. ...+..+++++.+ |++|| ++|++.++.....+.+...|+ .|.||.|.|.++...+|||++.+
T Consensus 12 ~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlL-d~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~~ 89 (252)
T 2h88_B 12 KKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVL-DALIKIKNELDSTLTFRRSCR-EGICGSCAMNIAGGNTLACTKKI 89 (252)
T ss_dssp EEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHH-HHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEETTEEEEGGGSBC
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEecCCCCChHH-HHHHHhCcccCCCccccCCCC-CCCCCCCEEEECCcEEccccCCH
Confidence 46777777765432 2356777888888 99999 999998864343445555896 89999999998877899999999
Q ss_pred ccccCCcceEEEEcC
Q 031117 134 GNKENSGKCRIKYLK 148 (165)
Q Consensus 134 ~~~~~~gDvtVe~~p 148 (165)
.+.+ ...++|+.++
T Consensus 90 ~~~~-g~~~~iepl~ 103 (252)
T 2h88_B 90 DPDL-SKTTKIYPLP 103 (252)
T ss_dssp CCCT-TSCEEEECST
T ss_pred hHcC-CCceEEeccc
Confidence 7432 1258888765
No 30
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.42 E-value=2.1e-07 Score=73.37 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=44.9
Q ss_pred EEEEecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcCCCeEEeeeceec
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVG 134 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~ 134 (165)
+++++.+|++|| ++|+++ |+. ... .|+ .|.||+|.|.++...++||.+.+.
T Consensus 21 ~~~~v~~~~tlL-~~Lr~~~gl~g~~~------~C~-~G~CGaC~V~vdG~~v~sC~~~~~ 73 (168)
T 1t3q_A 21 RVFYVEPRMHLA-DALREVVGLTGTKI------GCE-QGVCGSCTILIDGAPMRSCLTLAV 73 (168)
T ss_dssp EEEEECTTSBHH-HHHHHTTCCTTSCC------SCS-SSSSCTTEEEETTEEEEGGGSBGG
T ss_pred EEEecCCCCcHH-HHHHhcCCCCcccc------CCC-CCCCCCcEEEECCCEeechhhHHH
Confidence 577889999999 999996 887 656 698 799999999997778999999986
No 31
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.36 E-value=5.4e-07 Score=82.35 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=53.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCC-----C-ceeecccEEEcCCC-eEEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----G-GGSCGTCIVEKPES-WRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~Cg-----G-~G~CGTC~V~~~~g-~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+.+++++|+||| ++|+++|+.++. .|+ + .|.||.|.|+++.. .++||++.+. ++++|....
T Consensus 9 ~~v~v~~g~tiL-~a~~~~gi~ip~------lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~-----~gm~V~T~~ 76 (574)
T 3c8y_A 9 VQFNTDEDTTIL-KFARDNNIDISA------LCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIE-----DGMIINTNS 76 (574)
T ss_dssp EEEEECCCCBHH-HHHHHTTCCCCC------SSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCC-----TTCEEESSC
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcc-----cceeEEecc
Confidence 578999999999 999999999887 465 7 89999999998766 7999999996 678887654
Q ss_pred c
Q 031117 149 V 149 (165)
Q Consensus 149 ~ 149 (165)
+
T Consensus 77 ~ 77 (574)
T 3c8y_A 77 D 77 (574)
T ss_dssp H
T ss_pred h
Confidence 3
No 32
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.36 E-value=6.3e-07 Score=84.32 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=52.8
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccC-----CCceeecccEEEcC-----------------------CCeEE
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNC-----GGGGSCGTCIVEKP-----------------------ESWRL 127 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~C-----gG~G~CGTC~V~~~-----------------------~g~RL 127 (165)
+++++++|+||| ++++++|++++. .| ++.|.|+.|.|++. ....+
T Consensus 9 ~~~~v~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~ 81 (783)
T 3i9v_3 9 RIVEVPPGTSVM-DAVFHAGYDVPL------FCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAA 81 (783)
T ss_dssp CEEEECTTCBHH-HHHHHTTCCCCC------SSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEE
T ss_pred EEEEeCCCChHH-HHHHHhCCCccc------cCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCccc
Confidence 478999999999 999999999999 78 56899999999963 24678
Q ss_pred eeeceeccccCCcceEEEEcCc
Q 031117 128 ACQTIVGNKENSGKCRIKYLKV 149 (165)
Q Consensus 128 ACQ~~v~~~~~~gDvtVe~~p~ 149 (165)
||++.+. .+++|++..+
T Consensus 82 aC~t~v~-----~gm~v~t~~~ 98 (783)
T 3i9v_3 82 SCVTAVA-----DGMVVDTLSD 98 (783)
T ss_dssp TTTCBCC-----SSEEEESSSH
T ss_pred ccCCCCC-----CCCEEEECCH
Confidence 9999996 7899987543
No 33
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.13 E-value=2e-06 Score=68.20 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=52.9
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc--hhH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV--EAL 152 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~--~~~ 152 (165)
++++++++++|| ++|++. |+. +....|+ .|.||.|.|.++..-++||.+.+...+...-+|||-+.. ..+
T Consensus 15 ~~~~v~~~~tLL-d~LR~~lgl~-----g~k~gC~-~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL~~~~~~~ 87 (166)
T 1n62_A 15 VEALVEPRTLLI-HFIREQQNLT-----GAHIGCD-TSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTL 87 (166)
T ss_dssp EEEEECTTCBHH-HHHHHTSCCT-----TSCCCCS-SSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSSCTTSCC
T ss_pred EEEecCCCCcHH-HHHHHcCCCC-----ccccCCC-CCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCCCCcCCcc
Confidence 677899999999 999985 432 1122697 799999999998888999999985333222345554542 334
Q ss_pred HHHHHHh
Q 031117 153 CSLYRAV 159 (165)
Q Consensus 153 ~~~~~~~ 159 (165)
|.+-++.
T Consensus 88 ~pvq~a~ 94 (166)
T 1n62_A 88 SALQEGF 94 (166)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5444443
No 34
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.11 E-value=2.1e-06 Score=67.50 Aligned_cols=66 Identities=24% Similarity=0.449 Sum_probs=48.5
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcC
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLK 148 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p 148 (165)
+++++.+|++|| ++|++. |+. +....|+ .|.||.|.|.++...++||++.+.+.+...-+||+-++
T Consensus 14 ~~v~~~~~~tLL-~~Lr~~~gl~-----g~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~ 80 (161)
T 1rm6_C 14 REDLVPDNMLLL-DYLRETVGLT-----GTKQGCD-GGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLA 80 (161)
T ss_dssp EEEEEETTCBHH-HHHHHTTCCT-----TSCCCSS-SSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSS
T ss_pred EEEecCCcCcHH-HHHHHcCCCc-----ccccCCC-CCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCC
Confidence 677889999999 999986 442 2233798 79999999999888899999998632221224555444
No 35
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.07 E-value=3.4e-06 Score=66.75 Aligned_cols=77 Identities=14% Similarity=0.308 Sum_probs=52.5
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc-hhHH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV-EALC 153 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~-~~~~ 153 (165)
++++++++++|| ++|++. |+. +....|+ .|.||.|.|.++..-++||.+.+...+...-+|||-+.. ..+|
T Consensus 15 ~~~~v~~~~tLL-d~LR~~lglt-----g~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~~~~~l~ 87 (163)
T 1ffv_A 15 QEKAVEPRTLLI-HFLREELNLT-----GAHIGCE-TSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLH 87 (163)
T ss_dssp EEEEECTTCBHH-HHHHHTSCCT-----TSCCCCS-SSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTSBTTBCC
T ss_pred EEEecCCCCcHH-HHHHhcCCCc-----ccccCCC-CCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCCCCCCcC
Confidence 678899999999 999984 432 1223698 799999999998889999999986333222345554442 2344
Q ss_pred HHHHHh
Q 031117 154 SLYRAV 159 (165)
Q Consensus 154 ~~~~~~ 159 (165)
.+-++.
T Consensus 88 pvq~a~ 93 (163)
T 1ffv_A 88 AVQEGF 93 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 36
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.01 E-value=4e-06 Score=66.32 Aligned_cols=75 Identities=16% Similarity=0.332 Sum_probs=52.1
Q ss_pred EEEEecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcCCCeEEeeeceeccccCCcceEEEEcCc-hhH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKCRIKYLKV-EAL 152 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gDvtVe~~p~-~~~ 152 (165)
+++++.++++|| ++|+++ |+. ... .|+ .|.||.|.|.++..-++||.+.+...+...-+|||-+.+ .++
T Consensus 15 ~~v~v~p~~tLL-d~LR~~lgltgtk~------gC~-~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~~~~~l 86 (160)
T 3hrd_D 15 RSIVTEPNKRLL-DLLREDFGLTSVKE------GCS-EGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVAEDGKP 86 (160)
T ss_dssp EEEEECSSSBHH-HHHHTTSCCTTSCC------SSS-SSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTSBTTBC
T ss_pred EEEecCCCCCHH-HHHHHhcCCCcccc------ccC-CCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCCCCCcc
Confidence 678899999999 999975 552 333 598 899999999998888999999886333222234444433 234
Q ss_pred HHHHHH
Q 031117 153 CSLYRA 158 (165)
Q Consensus 153 ~~~~~~ 158 (165)
|.+-++
T Consensus 87 ~pvq~a 92 (160)
T 3hrd_D 87 SLLQQC 92 (160)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 544443
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.10 E-value=0.00029 Score=67.85 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred EEEEecCChHHHHHHHHhC-CCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc-cCCcceEEEEcCc-hhH
Q 031117 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK-ENSGKCRIKYLKV-EAL 152 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~-gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~-~~~gDvtVe~~p~-~~~ 152 (165)
+++++.++++|| ++|++. |+ .+....|+ .|.||.|.|.++.--++||.+.+... +...-+|||-+.. ..+
T Consensus 13 ~~~~~~~~~~ll-~~Lr~~~~l-----~g~k~gC~-~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~~~~~~ 85 (907)
T 1vlb_A 13 QNLFVDAEALLS-DVLRQQLGL-----TGVKVGCE-QGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQPENL 85 (907)
T ss_dssp EEEEECTTSBHH-HHHHHTTCC-----TTSCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHCBTTBC
T ss_pred EEEecCCCChHH-HHHHHhcCC-----CeecCCCC-CCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCCCCcCc
Confidence 678899999999 999984 32 23344799 69999999999888999999998643 3223456665652 334
Q ss_pred HHHHHH
Q 031117 153 CSLYRA 158 (165)
Q Consensus 153 ~~~~~~ 158 (165)
|.+-++
T Consensus 86 ~~~q~a 91 (907)
T 1vlb_A 86 HPLQKA 91 (907)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 544443
No 38
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.99 E-value=0.00038 Score=67.04 Aligned_cols=77 Identities=22% Similarity=0.406 Sum_probs=54.1
Q ss_pred EEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc-cCCcceEEEEcCc-hhHH
Q 031117 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK-ENSGKCRIKYLKV-EALC 153 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~-~~~gDvtVe~~p~-~~~~ 153 (165)
+++++.++++|| ++|++. +.+ .+....|+ .|.||.|.|.++.--++||.+.+... +...-+|||-+.. ..+|
T Consensus 13 ~~~~~~~~~~ll-~~Lr~~-~~l---~g~k~gC~-~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~~~~~~~ 86 (907)
T 1dgj_A 13 RRLLVSPNDLLV-DVLRSQ-LQL---TSVKVGCG-KGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPDCLH 86 (907)
T ss_dssp CEEEECTTCBHH-HHHHHT-TCC---TTSCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTCBTTBCC
T ss_pred EEEecCCCCcHH-HHHHHh-cCC---CccCCCCC-CCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCCCCcccC
Confidence 578899999999 999985 222 23445799 69999999999888999999998643 3323356665652 3345
Q ss_pred HHHHH
Q 031117 154 SLYRA 158 (165)
Q Consensus 154 ~~~~~ 158 (165)
.+-++
T Consensus 87 ~~q~a 91 (907)
T 1dgj_A 87 PLQHA 91 (907)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.88 E-value=0.00037 Score=62.57 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=54.1
Q ss_pred EEE-EecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEc----CCCeEEeeeceeccccCCcceEEEEcCc-
Q 031117 76 ERA-KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK----PESWRLACQTIVGNKENSGKCRIKYLKV- 149 (165)
Q Consensus 76 ~~v-~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~----~~g~RLACQ~~v~~~~~~gDvtVe~~p~- 149 (165)
+++ ++.++++|| ++|++.|+. +....|+ .|.||.|.|.+ +.--++||.+.+...+...-+|||-+..
T Consensus 12 ~~~~~~~~~~~Ll-~~Lr~~~l~-----g~k~gC~-~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiEgl~~~ 84 (462)
T 2w3s_A 12 RRVRIEDPTQSLL-EWLRAEGLT-----GTKEGCN-EGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAP 84 (462)
T ss_dssp EEEECSCTTCBHH-HHHHHTTCT-----TSCCSCS-SSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGTSCT
T ss_pred EEEecCCCCCcHH-HHHHHcCCC-----ccCCCCC-CCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEECCCCCC
Confidence 566 678999999 999955553 2344799 69999999997 6678999999986443333456776653
Q ss_pred -hhHHHHHHHh
Q 031117 150 -EALCSLYRAV 159 (165)
Q Consensus 150 -~~~~~~~~~~ 159 (165)
..+|.+-++.
T Consensus 85 ~~~~~~~q~a~ 95 (462)
T 2w3s_A 85 DGRLHPVQQAM 95 (462)
T ss_dssp TSCCCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 3455555544
No 40
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.011 Score=51.79 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCC-eEEeeecee
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPES-WRLACQTIV 133 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g-~RLACQ~~v 133 (165)
+..|+|+| || +.+++.+|+||+ +||+++|+++...-.+...+| .-.|+.|.|++... ..-+|++.+
T Consensus 13 ~~~v~~~~-------dg----~~~~~~~g~ti~-~a~~~~g~~~~~~~~~~~p~g-~~~~~~c~v~v~g~~~~~ac~~~v 79 (493)
T 1y56_A 13 GKKVTIYF-------EG----KELEAYEGEKLP-VALLANEIYWLTTSNEGRKRG-AFTFGPVPMTVNGVKGLEARRIKV 79 (493)
T ss_dssp SCEEEEEE-------TT----EEEEEETTCBHH-HHHHHTTCCCCEECTTSCEEC-SSSSSCCEEBSSSCTTEEGGGCBC
T ss_pred CCeEEEEE-------CC----EEEEecCCCHHH-HHHHHCCCceecCCCCCCCCc-cccceEEEEEECCEecccceeEEc
Confidence 34588877 44 578999999999 999999997532100011121 22268899996522 156999888
Q ss_pred c
Q 031117 134 G 134 (165)
Q Consensus 134 ~ 134 (165)
.
T Consensus 80 ~ 80 (493)
T 1y56_A 80 K 80 (493)
T ss_dssp C
T ss_pred c
Confidence 5
No 41
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=95.86 E-value=0.0021 Score=50.96 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=49.2
Q ss_pred EEEecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcC----------CCeEEeeeceeccccCCcceEE
Q 031117 77 RAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKP----------ESWRLACQTIVGNKENSGKCRI 144 (165)
Q Consensus 77 ~v~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~----------~g~RLACQ~~v~~~~~~gDvtV 144 (165)
+++++++++|| ++|++. |+- ... -|+ .|.||.|.|.++ .--..||.+.+...+...-+||
T Consensus 16 ~~~~~p~~~Ll-~~LR~~lgltGtK~------GC~-~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G~~I~Ti 87 (164)
T 3nvw_A 16 EKNADPETTLL-AYLRRKLGLRGTKL------GCG-EGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTV 87 (164)
T ss_dssp ETTCCTTCBHH-HHHHHTSCCTTSCC------SCS-SSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEECG
T ss_pred EecCCCCCCHH-HHHHHHcCCCCcCC------CcC-CCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCCcceEEe
Confidence 44688999999 999975 543 333 697 899999999976 4468999988764333233455
Q ss_pred EEcCc--hhHHHHHHHh
Q 031117 145 KYLKV--EALCSLYRAV 159 (165)
Q Consensus 145 e~~p~--~~~~~~~~~~ 159 (165)
|=+.+ ..+|.+-++.
T Consensus 88 EGL~~~~~~lhpvQ~af 104 (164)
T 3nvw_A 88 EGIGSTKTRLHPVQERI 104 (164)
T ss_dssp GGTCCTTSCCCHHHHHH
T ss_pred cccCCCCCccCHHHHHH
Confidence 54432 2345544443
No 42
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=94.85 E-value=0.02 Score=51.74 Aligned_cols=77 Identities=9% Similarity=0.017 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~~g~RLACQ~~v~~~ 136 (165)
+++|.+.+|+.+..+.+.+++|++.++++|| |+|.+.+ ++ .|.- +|.+.++..-+|| .+.+.+.
T Consensus 26 ~~~i~R~~p~~~~~p~~~~y~v~~~~~~~vL-d~L~~ik-----~l----~fr~-----sCam~ING~~~la-~t~~~~~ 89 (514)
T 3kwl_A 26 HVKVFRFETNKDYNPAYESYFLEYQEDQYLL-DLLKQLK-----GV----SYSE-----NIALKINQIAVFE-DAKVSDL 89 (514)
T ss_dssp EEEEEECBTTSCSCCEEEEEEEECCTTCBHH-HHHTTST-----TC----CCCS-----SCCEEETTEEECS-CCBHHHH
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCcHH-HHHHHhh-----hC----eeec-----cceEEECCEehhh-hhhHHHH
Confidence 4677777776655666777789999999999 9999877 22 3442 7889998889999 4444211
Q ss_pred c--CCcceEEEEcCc
Q 031117 137 E--NSGKCRIKYLKV 149 (165)
Q Consensus 137 ~--~~gDvtVe~~p~ 149 (165)
. ..+.++|++++.
T Consensus 90 ~~~~~~~i~iePl~~ 104 (514)
T 3kwl_A 90 VAFFSKEWVLDPLSK 104 (514)
T ss_dssp HHHHCSEEEEECSCS
T ss_pred hhccCCcEEEEECCC
Confidence 1 124788888764
No 43
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=94.07 E-value=0.018 Score=46.16 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCccccCcccccCCCceeecccEEEcC-C--CeEEeeec
Q 031117 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP-E--SWRLACQT 131 (165)
Q Consensus 87 LRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~~~-~--g~RLACQ~ 131 (165)
+++ |.+.|++..-++...|.|| -|.||.|.|... . +++.+|.-
T Consensus 206 v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~~~~~~~~~~C~d 251 (262)
T 1ep3_B 206 VAK-KYDQLERLYISMESRMACG-IGACYACVEHDKEDESHALKVCED 251 (262)
T ss_dssp HHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEETTEEEEEEETTTT
T ss_pred HHH-HHhCCCCEEEEecccccCc-ccccccCCcccccCCCceeEEeCC
Confidence 335 7788999888888899998 799999999854 3 57888864
No 44
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=93.69 E-value=0.066 Score=51.29 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=54.6
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCcccc---Cc--ccccCCCceeecccEEEcC---C--
Q 031117 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYAT---YG--KVMNCGGGGSCGTCIVEKP---E-- 123 (165)
Q Consensus 54 ~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~~---~~--~~~~CgG~G~CGTC~V~~~---~-- 123 (165)
.+..|+|+| || ..+++.+|++|+ +||+.+|+.+... |. +-..|++ |.|.-|.|.+. .
T Consensus 19 ~~~~~~~~~-------dG----~~~~~~~g~tv~-~aL~~~Gv~~~~~s~~~~~prg~~~~~-~~c~~~~v~v~~~~~g~ 85 (965)
T 2gag_A 19 REEALSLTV-------DG----AKLSAFRGDTVA-SALLANGVRRAGNSLYLDRPRGIFAAG-VEEPNALVTVSARHEQD 85 (965)
T ss_dssp EEEEEEEEE-------TT----EEEEEEETCBHH-HHHHHTTCCBCSCCTTTCCCCBCCCSS-TTCCSCEEEECCCSTTC
T ss_pred CCCeEEEEE-------CC----EEEEecCCCHHH-HHHHHcCCeEeecCCCCCCCcccccCC-ccCCceEEEEccCCCCC
Confidence 445688877 44 578999999999 9999999885432 12 2356874 88999999987 3
Q ss_pred ---CeEEeeeceeccccCCcceEEEE
Q 031117 124 ---SWRLACQTIVGNKENSGKCRIKY 146 (165)
Q Consensus 124 ---g~RLACQ~~v~~~~~~gDvtVe~ 146 (165)
....||++.+. ..++|+.
T Consensus 86 ~~~~~~~ac~~~~~-----~gm~~~~ 106 (965)
T 2gag_A 86 IDESMLPATTVPVT-----EDLNATL 106 (965)
T ss_dssp CCEEEEEGGGCBCC-----TTEEEEE
T ss_pred cCCccccceeeecc-----cceEeec
Confidence 35689998885 4555543
No 45
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=83.70 E-value=0.68 Score=46.53 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=45.5
Q ss_pred EecCChHHHHHHHHhC-CCC-ccccCcccccCCCceeecccEEEcC----------CCeEEeeeceeccccCCcceEEEE
Q 031117 79 KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKP----------ESWRLACQTIVGNKENSGKCRIKY 146 (165)
Q Consensus 79 ~v~~G~tLLRdall~~-gi~-l~~~~~~~~~CgG~G~CGTC~V~~~----------~g~RLACQ~~v~~~~~~gDvtVe~ 146 (165)
.+.+.++|| +.|++. |+- ... -|+ .|.||.|.|.+. .--..||.+.+..-+...-.|||=
T Consensus 19 ~~~p~~~ll-~~LR~~~~ltgtk~------gC~-~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TiEg 90 (1332)
T 3unc_A 19 NADPETTLL-AYLRRKLGLRGTKL------GCG-EGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEG 90 (1332)
T ss_dssp TCCTTCBHH-HHHHHTSCCTTSCC------SCS-SSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEECGGG
T ss_pred cCCCCCCHH-HHHhhhcCCCCcCC------CcC-CCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCEEEEecc
Confidence 578999999 999974 543 222 598 799999999963 234789988775333222234443
Q ss_pred cCc--hhHHHHHHHh
Q 031117 147 LKV--EALCSLYRAV 159 (165)
Q Consensus 147 ~p~--~~~~~~~~~~ 159 (165)
+.. ..+|-+-.+.
T Consensus 91 l~~~~~~~hpvq~a~ 105 (1332)
T 3unc_A 91 IGSTKTRLHPVQERI 105 (1332)
T ss_dssp TCCTTSCCCHHHHHH
T ss_pred ccCCCCCcCHHHHHH
Confidence 322 2355544443
No 46
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=80.59 E-value=1.7 Score=31.65 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=30.5
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccc
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
-+|+|++++ +||...++.|. ..|++|| ++|.++. .+..
T Consensus 7 k~i~i~v~~----~~~~~~~~~v~-t~g~tL~-dvLk~~~-~ve~ 44 (101)
T 3u7z_A 7 KHITVTVIH----GDQTENVFEFD-TDAKYLG-EVLESEN-LVDG 44 (101)
T ss_dssp EEEEEEEEC----TTSCEEEEEEE-ECCSBHH-HHHHHTT-CEEE
T ss_pred eEEEEEEEc----CCCceeEEEEc-CCccHHH-HHHHHcC-cccc
Confidence 568898988 57777778888 9999999 9999888 3443
No 47
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=58.00 E-value=13 Score=37.41 Aligned_cols=35 Identities=40% Similarity=0.680 Sum_probs=25.6
Q ss_pred ecCChHHHHHHHHhCCCCccccCcccccCCCceeecccEEE
Q 031117 80 AISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE 120 (165)
Q Consensus 80 v~~G~tLLRdall~~gi~l~~~~~~~~~CgG~G~CGTC~V~ 120 (165)
+.+..||| +.|+++ ..+-+ +|. -|+ .|-||.|.|-
T Consensus 24 ~~p~~tLl-~~LR~~-~~ltG--TK~-gC~-EG~CGACtV~ 58 (1335)
T 3zyv_A 24 ADPEVNLL-FYLRKV-IRLTG--TKY-GCG-GGDCGACTVM 58 (1335)
T ss_dssp CCTTCBHH-HHHHHT-TCCTT--SCC-SCS-SSSSCTTEEE
T ss_pred CCcCccHH-HHHhcc-CCCcc--ccc-ccC-CCCCcceEEE
Confidence 67899999 898873 22322 122 599 7999999998
No 48
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=36.66 E-value=30 Score=25.10 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=18.9
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHh
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLD 93 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~ 93 (165)
..|++-+ |++.. ..|++.+|++ |||||.+
T Consensus 18 ~~irvhL------PNqQr--T~V~VrpG~t-lrdAL~K 46 (95)
T 2l05_A 18 PIVRVFL------PNKQR--TVVPARCGVT-VRDSLKK 46 (95)
T ss_dssp CEEEEEE------TTTEE--EEEECCTTCB-HHHHHHH
T ss_pred cEEEEEC------CCCCe--EEEEecCCcC-HHHHHHH
Confidence 4566655 44432 5789999999 5576553
No 49
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=32.78 E-value=28 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=19.4
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHh
Q 031117 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLD 93 (165)
Q Consensus 55 ~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~ 93 (165)
...|++-+ |++.. ..|++.+|.+ ||+||.+
T Consensus 13 ~~~irvhL------PNqQr--T~V~VrpG~t-lrdaL~K 42 (96)
T 3ny5_A 13 KPIVRVFL------PNKQR--TVVPARCGVT-VRDSLKK 42 (96)
T ss_dssp SCEEEEEE------TTTEE--EEEECCTTCB-HHHHHHH
T ss_pred hCEEEEEC------CCCce--EEEEecCCcC-HHHHHHH
Confidence 45666655 34432 5789999999 5566553
No 50
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=31.67 E-value=33 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.1
Q ss_pred EEEEecCChHHHHHHHHh
Q 031117 76 ERAKAISGEKLLRNIMLD 93 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall~ 93 (165)
..|++.+|++ |||||.+
T Consensus 31 T~V~VrpG~t-lrdaL~K 47 (107)
T 1rrb_A 31 TVVNVRNGMS-LHDCLMK 47 (107)
T ss_dssp EEEECCTTCB-HHHHHHH
T ss_pred EEEEecCCcC-HHHHHHH
Confidence 5899999999 5576654
No 51
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.09 E-value=29 Score=24.68 Aligned_cols=28 Identities=4% Similarity=0.035 Sum_probs=18.2
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHH
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIML 92 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall 92 (165)
..|++.+ |++.. ..|++.+|++ ||+||.
T Consensus 8 ~~irvhL------Pn~Qr--T~V~VrpG~t-lrdaL~ 35 (86)
T 1wxm_A 8 GTVKVYL------PNKQR--TVVTVRDGMS-VYDSLD 35 (86)
T ss_dssp SEEEEEC------SSSCE--EEEECCSSCB-SHHHHH
T ss_pred ceEEEEC------CCCCe--EEEEecCCcC-HHHHHH
Confidence 4566655 44432 5789999999 446554
No 52
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=29.14 E-value=32 Score=23.94 Aligned_cols=23 Identities=9% Similarity=0.136 Sum_probs=15.5
Q ss_pred EEEEecCChHHHHHHHH----hCCCCcc
Q 031117 76 ERAKAISGEKLLRNIML----DNKIELY 99 (165)
Q Consensus 76 ~~v~v~~G~tLLRdall----~~gi~l~ 99 (165)
..|++.+|++ |||||. ..|+..+
T Consensus 14 T~V~VrpG~t-lrdaL~KaLk~R~L~pe 40 (77)
T 1c1y_B 14 TVVNVRNGMS-LHDCLMKALKVRGLQPE 40 (77)
T ss_dssp EEEECCTTCB-HHHHHHHHHHTTTCCGG
T ss_pred EEEEecCCcC-HHHHHHHHHHHcCCCHH
Confidence 5789999999 546654 4455433
No 53
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=26.11 E-value=39 Score=29.90 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.4
Q ss_pred eEEEEecCChHHHHHHHHhC
Q 031117 75 VERAKAISGEKLLRNIMLDN 94 (165)
Q Consensus 75 ~~~v~v~~G~tLLRdall~~ 94 (165)
.+.|.+++|+++| ++|.++
T Consensus 314 ~~~Vtv~~gssll-~vLk~a 332 (399)
T 2pmv_A 314 TINVSVKSGSVLL-VVLEEA 332 (399)
T ss_dssp CEEEESSSCSCHH-HHHHHH
T ss_pred ceEEEecCCCCHH-HHHHHH
Confidence 4689999999998 888876
No 54
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=25.29 E-value=76 Score=21.03 Aligned_cols=35 Identities=3% Similarity=0.080 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCCCCccc
Q 031117 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 57 ~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
+|+|++++. ...++++++|.|+. |.+.+-|++...
T Consensus 2 ~v~Vkl~g~--------~~~~~ev~~g~Tv~-dLL~~Lgl~~~~ 36 (74)
T 2l32_A 2 NVTVEVVGE--------ETSEVAVDDDGTYA-DLVRAVDLSPHE 36 (74)
T ss_dssp EEEEECSSS--------SEEEEECSTTCSHH-HHHHTTCCCSSC
T ss_pred EEEEEEeCc--------cceeEEcCCCCcHH-HHHHHcCCCcce
Confidence 366666531 23578999999977 999999998765
No 55
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=24.38 E-value=88 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChHHHHHHHHhCC
Q 031117 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNK 95 (165)
Q Consensus 56 p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLLRdall~~g 95 (165)
..|+|++.-. +......+.|.+++|++++ ++|.++-
T Consensus 315 ~~I~VtytV~---~~~~~~~~~Vtv~~gssll-~vLk~A~ 350 (414)
T 2bb6_A 315 KFIDVLLKVS---GISPSYRHSVSVPAGSSLE-DILKNAQ 350 (414)
T ss_dssp CEEEEEEEEE---SSSSCEEEEEEEETTCCHH-HHHHHHH
T ss_pred ceEEEEEEEe---eCCCccceEEEecCCCCHH-HHHHHHH
Confidence 3455544332 1334456889999999988 8887653
No 56
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=23.72 E-value=1.2e+02 Score=19.95 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=24.2
Q ss_pred CCCCcEEEEEecCCCCCCCCCCeEEEEecCChHHH--HH-HHHhCCCCccc
Q 031117 53 PEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL--RN-IMLDNKIELYA 100 (165)
Q Consensus 53 ~~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLL--Rd-all~~gi~l~~ 100 (165)
++...++|++.. .+|. .+.+++.+.+|+. .+ +....|++...
T Consensus 13 ~~~~~m~i~Vk~----~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (91)
T 3v6c_B 13 VPRGSMQIFVNT----LTGT--HITLEVEPSDTIENVKAKIQDKEGIPPDQ 57 (91)
T ss_dssp CCCCSEEEEEEC----TTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCeEEEEEEe----CCCC--EEEEEECCCCCHHHHHHHHHhhhCCChhh
Confidence 334567776654 3454 3688999988863 11 22344665543
No 57
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.42 E-value=1.1e+02 Score=20.14 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=18.4
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChHHH
Q 031117 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87 (165)
Q Consensus 54 ~~p~i~v~f~~p~~~~DG~~~~~~v~v~~G~tLL 87 (165)
+|..++|++.. .+|.....++++.+.+|+.
T Consensus 4 ~~~~m~i~Vk~----~~~~~~~~~v~v~~~~TV~ 33 (93)
T 1wgd_A 4 GSSGVTLLVKS----PNQRHRDLELSGDRGWSVG 33 (93)
T ss_dssp CSCCCEEEEEC----SSSSCCCEEEECCTTSCHH
T ss_pred CCcEEEEEEEe----CCCCeEEEEEecCCCCcHH
Confidence 45557776655 2344334677777888873
No 58
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.15 E-value=95 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCCCCCeEEEEecCChHHHHHHHHhCCCCccc
Q 031117 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (165)
Q Consensus 69 ~DG~~~~~~v~v~~G~tLLRdall~~gi~l~~ 100 (165)
|||+ ..+++.|.|++ +++.+.+..+..
T Consensus 8 p~g~----~~~~~~g~T~~-dla~~i~~~l~~ 34 (73)
T 2kmm_A 8 PKGE----IKRLPQGATAL-DFAYSLHSDLGD 34 (73)
T ss_dssp TTCC----EEEECTTCBHH-HHHHHHCSHHHH
T ss_pred CCCC----EEEcCCCCcHH-HHHHHHhhcccc
Confidence 4664 46788999988 888776554433
Done!