BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031118
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XY7|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g48480
 pdb|1XY7|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g48480
 pdb|2Q48|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g48480
 pdb|2Q48|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g48480
          Length = 166

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 23  FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTF 82
           FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F
Sbjct: 23  FTEFKQXLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSF 82

Query: 83  LVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERV 140
           +V DVS     + A++ G+G    L T+D                               
Sbjct: 83  VVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVELGFK--- 139

Query: 141 GKVKDPYGFTWLIC 154
           GKV DP+G TW+  
Sbjct: 140 GKVTDPFGVTWIFA 153


>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
 pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
          Length = 523

 Score = 28.1 bits (61), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 25  GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLV 84
           GM+P +  E P + DA++ Y   F AV   R     R+AE+         + ++GS   V
Sbjct: 435 GMQPNV-EETPISKDALKHYALVFDAVYTPRITRLLREAEES------GAITVSGSEMFV 487


>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
           Dehydratase- Shikimate Dehydrogenase In Complex With
           Tartrate And Shikimate
          Length = 523

 Score = 28.1 bits (61), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 25  GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLV 84
           GM+P +  E P + DA++ Y   F AV   R     R+AE+         + ++GS   V
Sbjct: 435 GMQPNV-EETPISKDALKHYALVFDAVYTPRITRLLREAEES------GAITVSGSEMFV 487


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,597,358
Number of Sequences: 62578
Number of extensions: 94280
Number of successful extensions: 126
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 5
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)