BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031118
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480 OS=Arabidopsis thaliana
GN=At5g48480 PE=1 SV=1
Length = 166
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 91/152 (59%), Gaps = 16/152 (10%)
Query: 9 NGAAPEKAPATAASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELP 68
NGA P + T FT K LLVEA K DAV FYK+AFGA+E G S+ KRK +QELP
Sbjct: 12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELP 68
Query: 69 LISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDVEAAVAKAVSAGA---- 122
+ ++L +AGS+F+V DVS + A++ G+G L T+D EAAVAKAV AGA
Sbjct: 69 HVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVE 128
Query: 123 VAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154
V E E+ G GKV DP+G TW+
Sbjct: 129 VTEAEVELGFK-------GKVTDPFGVTWIFA 153
>sp|P64742|Y911_MYCBO Uncharacterized protein Mb0911c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0911c PE=4 SV=1
Length = 170
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVS 85
+ P L+V+ A A+ FY AF AVE+GR K LI A L I G T +++
Sbjct: 27 LSPHLVVD--DAASAIDFYVKAFDAVELGRVPGPDGK------LIHAA-LRINGFTVMLN 77
Query: 86 D-----VSGDSAAAQTVG-TGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGER 139
D G S ++G T + L DV+A +A++AGA L + G+R
Sbjct: 78 DDVPQMCGGKSMTPTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALED---QLWGDR 134
Query: 140 VGKVKDPYGFTWLICSPVKKC 160
G V DP+G W + PV++
Sbjct: 135 YGVVADPFGHHWSLGQPVREV 155
>sp|P64741|Y887_MYCTU Uncharacterized protein Rv0887c/MT0910 OS=Mycobacterium
tuberculosis GN=Rv0887c PE=4 SV=1
Length = 170
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVS 85
+ P L+V+ A A+ FY AF AVE+GR K LI A L I G T +++
Sbjct: 27 LSPHLVVD--DAASAIDFYVKAFDAVELGRVPGPDGK------LIHAA-LRINGFTVMLN 77
Query: 86 D-----VSGDSAAAQTVG-TGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGER 139
D G S ++G T + L DV+A +A++AGA L + G+R
Sbjct: 78 DDVPQMCGGKSMTPTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALED---QLWGDR 134
Query: 140 VGKVKDPYGFTWLICSPVKKC 160
G V DP+G W + PV++
Sbjct: 135 YGVVADPFGHHWSLGQPVREV 155
>sp|P16681|PHNB_ECOLI Protein PhnB OS=Escherichia coli (strain K12) GN=phnB PE=4 SV=1
Length = 147
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 38 TDAVQFYKTAFGA-----VEIGRSVETKRKAEQELP--------LISCAQLEIAGSTFLV 84
+DA+ +Y+ GA + G ++ + + + P I+ A + IAGS ++
Sbjct: 14 SDAIAYYQRTLGAELLYKISFGEMPKSAQDSAENCPSGMQFPDTAIAHANVRIAGSDIMM 73
Query: 85 SDVSGDSAAAQTVGTGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVK 144
SD A+ + G L L+++ VE + A + E+A GKV
Sbjct: 74 SDAMPSGKASYS---GFTLVLDSQQVEEGKRWFDNLAANGKIEMA-WQETFWAHGFGKVT 129
Query: 145 DPYGFTWLI 153
D +G W+I
Sbjct: 130 DKFGVPWMI 138
>sp|Q98UI9|MUC5B_CHICK Mucin-5B OS=Gallus gallus GN=MUC5B PE=1 SV=1
Length = 2108
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 54 GRSVETKRKAEQELPLISCAQ--LEIAGSTFLVSDVSG-------DSAAAQTVGTGCVLC 104
G+ V+ +++ L C Q L+ G T LV D SA +G+ C
Sbjct: 729 GKIVQPGNSFQEDKLLCKCIQGRLDCIGETVLVKDCPAPMYYFNCSSAGPGAIGSECQKS 788
Query: 105 LETEDVEAAVAKAVSAGAVAEGELAEGNGAC 135
+T+D+ V + VS +G + +G+G C
Sbjct: 789 CKTQDMHCYVTECVSGCMCPDGLVLDGSGGC 819
>sp|Q5VU43|MYOME_HUMAN Myomegalin OS=Homo sapiens GN=PDE4DIP PE=1 SV=1
Length = 2346
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 52 EIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLETEDVE 111
E + +E KRKAE+EL + AQ+E AG S+ + T LCLE +++
Sbjct: 1012 EFHQHLEEKRKAEEELKELK-AQIEEAGF----------SSVSHIRNTMLSLCLENAELK 1060
Query: 112 AAVAKAVSAGAVAEGELAEG 131
+ +A+S G E + +G
Sbjct: 1061 EQMGEAMSDGWEIEEDKEKG 1080
>sp|Q7N360|EFPL_PHOLL Elongation factor P-like protein OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=plu2861 PE=3 SV=1
Length = 190
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 1 MADVQEVQNGAAPEKAPATAASFTG---MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSV 57
MA E++ G+A S+ G + + ++AP A A YK F + G+ V
Sbjct: 1 MAKANEIKRGSA--------VSYNGKLLLVKDIDIQAPSARGASTLYKMRFTDIRTGQKV 52
Query: 58 ETKRKAEQELPLISCAQLEIAGS 80
E + K + L IS + + S
Sbjct: 53 EERFKGDDILDTISLTRRSVNFS 75
>sp|A2SU30|TRUA_METLZ tRNA pseudouridine synthase A OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=truA PE=3 SV=1
Length = 281
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 46 TAFGAVEIGRS-VETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLC 104
+ F +E GR V T +AE C E+A +FL + V G + A QT+G G LC
Sbjct: 137 SGFAKMEAGRDPVRTVTRAEVFEGKDGCPVFEVAAKSFLWNMVRGMAGALQTIGLG--LC 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,233,788
Number of Sequences: 539616
Number of extensions: 2187113
Number of successful extensions: 5301
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5287
Number of HSP's gapped (non-prelim): 23
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)