Query 031118
Match_columns 165
No_of_seqs 117 out of 1069
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2764 PhnB Uncharacterized p 99.9 2.3E-23 5E-28 149.6 17.0 131 25-159 1-134 (136)
2 cd08355 Glo_EDI_BRP_like_14 Th 99.9 3.1E-21 6.8E-26 135.3 17.6 118 26-155 1-121 (122)
3 PRK10148 hypothetical protein; 99.9 3.4E-21 7.3E-26 140.9 17.5 126 25-157 2-142 (147)
4 cd07246 Glo_EDI_BRP_like_8 Thi 99.9 7.7E-21 1.7E-25 132.5 17.7 119 25-155 2-121 (122)
5 cd06588 PhnB_like Escherichia 99.9 1.4E-20 3E-25 134.1 16.3 122 26-154 1-128 (128)
6 cd07264 Glo_EDI_BRP_like_15 Th 99.8 6E-19 1.3E-23 123.6 15.2 114 27-156 3-125 (125)
7 cd08359 Glo_EDI_BRP_like_22 Th 99.8 9.5E-19 2.1E-23 121.9 15.5 114 24-155 1-119 (119)
8 cd09011 Glo_EDI_BRP_like_23 Th 99.8 2.3E-18 5E-23 120.6 14.0 115 23-156 1-119 (120)
9 cd08350 BLMT_like BLMT, a bleo 99.8 3.8E-18 8.3E-23 119.5 13.6 110 25-156 3-119 (120)
10 cd08356 Glo_EDI_BRP_like_17 Th 99.8 4E-18 8.6E-23 118.8 13.5 108 24-155 1-113 (113)
11 cd08342 HPPD_N_like N-terminal 99.8 1.1E-17 2.3E-22 120.2 15.7 118 28-159 4-126 (136)
12 cd08349 BLMA_like Bleomycin bi 99.8 3.9E-17 8.4E-22 112.0 14.6 110 28-155 2-112 (112)
13 cd07247 SgaA_N_like N-terminal 99.8 8.2E-17 1.8E-21 111.2 15.3 111 29-155 3-114 (114)
14 PF06983 3-dmu-9_3-mt: 3-demet 99.7 2E-16 4.3E-21 111.3 16.0 112 25-154 2-116 (116)
15 PF12681 Glyoxalase_2: Glyoxal 99.7 9.9E-17 2.1E-21 109.6 13.8 104 30-154 1-108 (108)
16 cd07261 Glo_EDI_BRP_like_11 Th 99.7 1.2E-16 2.5E-21 110.6 14.0 109 28-155 2-114 (114)
17 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2.2E-16 4.7E-21 109.0 14.0 107 26-156 2-111 (112)
18 cd07235 MRD Mitomycin C resist 99.7 2E-16 4.3E-21 110.6 13.7 111 28-155 4-122 (122)
19 PRK10291 glyoxalase I; Provisi 99.7 8.8E-16 1.9E-20 108.9 15.5 119 30-162 2-126 (129)
20 PLN02367 lactoylglutathione ly 99.7 1.5E-15 3.3E-20 117.9 17.7 122 23-157 74-223 (233)
21 cd07233 Glyoxalase_I Glyoxalas 99.7 2.5E-15 5.3E-20 104.5 16.0 114 28-154 4-121 (121)
22 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2E-15 4.4E-20 103.9 14.5 113 29-155 3-119 (119)
23 cd09012 Glo_EDI_BRP_like_24 Th 99.7 2.2E-15 4.8E-20 105.9 13.9 111 27-155 3-123 (124)
24 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 5E-15 1.1E-19 106.3 15.2 124 27-156 6-141 (142)
25 COG3324 Predicted enzyme relat 99.7 5.6E-15 1.2E-19 104.8 14.6 122 21-157 4-126 (127)
26 PRK11478 putative lyase; Provi 99.7 7.5E-15 1.6E-19 103.5 15.3 118 28-155 8-128 (129)
27 PRK04101 fosfomycin resistance 99.7 6.8E-15 1.5E-19 105.9 15.3 114 27-157 5-120 (139)
28 cd07251 Glo_EDI_BRP_like_10 Th 99.7 4.7E-15 1E-19 102.9 13.4 111 28-155 2-120 (121)
29 TIGR03081 metmalonyl_epim meth 99.7 5.8E-15 1.3E-19 103.5 13.5 116 28-155 5-128 (128)
30 cd08352 Glo_EDI_BRP_like_1 Thi 99.6 1.8E-14 3.9E-19 100.1 15.7 117 29-155 6-125 (125)
31 cd07241 Glo_EDI_BRP_like_3 Thi 99.6 1.3E-14 2.9E-19 101.0 14.6 116 27-154 4-125 (125)
32 TIGR00068 glyox_I lactoylgluta 99.6 4.6E-14 1E-18 102.8 17.7 125 23-159 16-144 (150)
33 cd08357 Glo_EDI_BRP_like_18 Th 99.6 6.2E-15 1.3E-19 103.0 12.4 113 28-155 3-124 (125)
34 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 2.5E-14 5.4E-19 99.4 15.3 115 28-155 7-124 (125)
35 cd08351 ChaP_like ChaP, an enz 99.6 2.3E-14 4.9E-19 100.8 15.0 109 23-156 3-121 (123)
36 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 9.8E-15 2.1E-19 99.3 12.5 111 29-153 3-114 (114)
37 PLN03042 Lactoylglutathione ly 99.6 6.5E-14 1.4E-18 106.0 17.3 126 21-157 24-175 (185)
38 TIGR03645 glyox_marine lactoyl 99.6 4.3E-14 9.4E-19 104.6 15.7 132 28-159 6-154 (162)
39 cd08354 Glo_EDI_BRP_like_13 Th 99.6 2.9E-14 6.4E-19 99.1 14.0 113 26-156 2-122 (122)
40 cd08363 FosB FosB, a fosfomyci 99.6 2.4E-14 5.3E-19 102.2 13.4 111 30-157 4-116 (131)
41 PRK06724 hypothetical protein; 99.6 3.7E-14 8E-19 101.3 14.1 111 23-156 4-123 (128)
42 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.8E-14 6.2E-19 98.2 12.9 106 29-155 3-110 (113)
43 cd06587 Glo_EDI_BRP_like This 99.6 1.1E-13 2.4E-18 93.0 13.8 110 29-153 3-112 (112)
44 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.2E-13 4.7E-18 95.0 15.4 112 25-157 2-118 (120)
45 cd08364 FosX FosX, a fosfomyci 99.6 2.6E-13 5.7E-18 96.7 15.6 121 23-157 1-123 (131)
46 cd07262 Glo_EDI_BRP_like_19 Th 99.6 2.5E-13 5.5E-18 95.0 14.1 112 30-155 4-123 (123)
47 cd07265 2_3_CTD_N N-terminal d 99.5 6.1E-13 1.3E-17 93.1 14.8 108 26-157 6-120 (122)
48 cd07255 Glo_EDI_BRP_like_12 Th 99.5 1.1E-12 2.4E-17 91.8 16.0 111 27-157 5-120 (125)
49 cd08343 ED_TypeI_classII_C C-t 99.5 7.3E-13 1.6E-17 94.1 15.2 113 28-159 3-120 (131)
50 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 9.3E-13 2E-17 92.6 15.3 113 28-156 5-128 (128)
51 cd07240 ED_TypeI_classII_N N-t 99.5 8.3E-13 1.8E-17 91.1 14.8 104 27-156 5-114 (117)
52 cd08362 BphC5-RrK37_N_like N-t 99.5 3.8E-13 8.3E-18 93.4 13.0 105 29-157 6-118 (120)
53 cd08346 PcpA_N_like N-terminal 99.5 6.4E-13 1.4E-17 92.5 14.1 114 28-154 5-126 (126)
54 PLN02300 lactoylglutathione ly 99.5 5.9E-13 1.3E-17 106.8 15.7 120 26-157 24-149 (286)
55 cd07244 FosA FosA, a Fosfomyci 99.5 6.1E-13 1.3E-17 93.2 13.6 105 28-157 5-111 (121)
56 cd07249 MMCE Methylmalonyl-CoA 99.5 7.1E-13 1.5E-17 92.6 13.9 117 28-155 4-128 (128)
57 cd07243 2_3_CTD_C C-terminal d 99.5 1.3E-12 2.8E-17 94.8 15.2 110 29-155 9-124 (143)
58 cd07267 THT_Oxygenase_N N-term 99.5 1.5E-12 3.2E-17 90.3 14.9 105 28-157 5-111 (113)
59 PF00903 Glyoxalase: Glyoxalas 99.5 1.4E-13 3E-18 95.7 9.6 117 29-153 4-128 (128)
60 cd08348 BphC2-C3-RGP6_C_like T 99.5 2.4E-12 5.1E-17 91.4 16.0 115 29-160 4-124 (134)
61 cd08361 PpCmtC_N N-terminal do 99.5 1.6E-12 3.5E-17 91.7 14.8 108 27-159 7-122 (124)
62 cd08347 PcpA_C_like C-terminal 99.5 1.2E-12 2.5E-17 96.6 14.4 111 28-157 5-121 (157)
63 cd07252 BphC1-RGP6_N_like N-te 99.5 1.2E-12 2.7E-17 91.6 13.6 108 27-158 5-119 (120)
64 cd08344 MhqB_like_N N-terminal 99.5 2E-12 4.3E-17 89.4 13.9 104 28-157 4-110 (112)
65 COG3607 Predicted lactoylgluta 99.5 4.5E-13 9.8E-18 93.6 10.0 116 24-156 3-127 (133)
66 cd08360 MhqB_like_C C-terminal 99.5 5.8E-12 1.3E-16 89.9 15.5 109 29-157 6-121 (134)
67 cd07257 THT_oxygenase_C The C- 99.5 1.6E-12 3.4E-17 95.3 12.5 117 29-157 4-126 (153)
68 PLN02300 lactoylglutathione ly 99.5 5.3E-12 1.1E-16 101.4 16.2 120 26-158 156-280 (286)
69 cd08358 Glo_EDI_BRP_like_21 Th 99.5 8.9E-12 1.9E-16 89.0 15.6 113 25-155 3-126 (127)
70 cd07266 HPCD_N_class_II N-term 99.5 4.7E-12 1E-16 88.2 13.7 108 27-157 5-119 (121)
71 cd07239 BphC5-RK37_C_like C-te 99.5 6E-12 1.3E-16 91.4 14.7 107 29-157 7-118 (144)
72 cd09014 BphC-JF8_C_like C-term 99.4 1E-11 2.2E-16 92.2 15.6 114 27-157 9-128 (166)
73 cd07258 PpCmtC_C C-terminal do 99.4 7.4E-12 1.6E-16 90.7 13.7 112 29-161 4-119 (141)
74 cd07237 BphC1-RGP6_C_like C-te 99.4 2.1E-11 4.5E-16 89.4 15.7 117 26-157 11-132 (154)
75 cd09013 BphC-JF8_N_like N-term 99.4 1.7E-11 3.7E-16 85.6 14.5 104 29-157 9-119 (121)
76 COG3865 Uncharacterized protei 99.4 2.3E-11 5E-16 87.0 14.6 119 23-157 3-125 (151)
77 cd07256 HPCD_C_class_II C-term 99.4 6.3E-11 1.4E-15 87.5 15.1 110 29-156 6-123 (161)
78 TIGR03211 catechol_2_3 catecho 99.3 9.3E-11 2E-15 94.5 15.5 113 27-154 146-263 (303)
79 TIGR03213 23dbph12diox 2,3-dih 99.2 6.5E-10 1.4E-14 89.0 15.7 114 29-157 145-264 (286)
80 TIGR03213 23dbph12diox 2,3-dih 99.2 2.7E-10 5.9E-15 91.2 13.1 106 29-157 6-119 (286)
81 TIGR03211 catechol_2_3 catecho 99.2 9.8E-10 2.1E-14 88.5 14.7 108 27-157 7-119 (303)
82 TIGR02295 HpaD 3,4-dihydroxyph 99.2 1.1E-09 2.4E-14 87.7 14.9 103 27-157 7-116 (294)
83 PRK01037 trmD tRNA (guanine-N( 99.2 2.9E-10 6.4E-15 92.6 11.1 106 25-158 248-356 (357)
84 TIGR02295 HpaD 3,4-dihydroxyph 99.1 2.5E-09 5.5E-14 85.6 14.0 113 28-157 138-257 (294)
85 KOG2944 Glyoxalase [Carbohydra 99.1 1.1E-09 2.3E-14 79.7 9.7 123 27-156 25-168 (170)
86 PF13669 Glyoxalase_4: Glyoxal 99.0 1.1E-08 2.3E-13 70.6 11.7 92 28-128 3-97 (109)
87 TIGR01263 4HPPD 4-hydroxypheny 98.8 3.5E-07 7.6E-12 75.6 16.2 96 26-131 4-104 (353)
88 COG2514 Predicted ring-cleavag 98.8 1.7E-07 3.7E-12 73.8 13.4 111 27-157 13-127 (265)
89 COG3565 Predicted dioxygenase 98.8 1E-07 2.3E-12 66.0 10.4 117 28-157 6-130 (138)
90 KOG2943 Predicted glyoxalase [ 98.7 1.4E-07 3E-12 73.1 9.4 119 21-155 12-142 (299)
91 cd07250 HPPD_C_like C-terminal 98.7 2.6E-07 5.5E-12 70.2 10.5 100 27-131 4-115 (191)
92 COG0346 GloA Lactoylglutathion 98.6 3.4E-07 7.3E-12 62.7 8.1 118 25-155 3-138 (138)
93 KOG2943 Predicted glyoxalase [ 98.4 2.8E-06 6.1E-11 66.0 9.1 117 26-157 151-271 (299)
94 TIGR01263 4HPPD 4-hydroxypheny 98.3 7.2E-06 1.6E-10 67.8 11.4 127 26-157 158-311 (353)
95 PLN02875 4-hydroxyphenylpyruva 98.0 0.00039 8.5E-09 58.5 14.9 123 30-157 4-152 (398)
96 KOG0638 4-hydroxyphenylpyruvat 98.0 2.4E-05 5.2E-10 63.1 7.2 134 9-155 6-147 (381)
97 PF14506 CppA_N: CppA N-termin 97.8 0.0011 2.3E-08 46.6 11.9 112 26-157 2-115 (125)
98 PLN02875 4-hydroxyphenylpyruva 97.8 0.00035 7.6E-09 58.8 11.4 105 21-128 176-295 (398)
99 PF14696 Glyoxalase_5: Hydroxy 97.5 0.0019 4.1E-08 46.8 9.7 114 29-158 12-128 (139)
100 COG3185 4-hydroxyphenylpyruvat 97.0 0.0021 4.5E-08 52.8 6.2 99 26-130 167-276 (363)
101 COG2514 Predicted ring-cleavag 96.5 0.062 1.4E-06 42.7 10.9 34 20-55 164-197 (265)
102 PF13468 Glyoxalase_3: Glyoxal 96.3 0.045 9.8E-07 40.6 9.2 89 28-123 2-101 (175)
103 PF13669 Glyoxalase_4: Glyoxal 95.3 0.082 1.8E-06 35.9 6.3 56 102-160 2-59 (109)
104 PF15067 FAM124: FAM124 family 93.7 1 2.2E-05 35.3 9.5 99 28-153 132-235 (236)
105 COG3185 4-hydroxyphenylpyruvat 93.4 1.8 3.8E-05 36.0 10.9 109 28-147 24-141 (363)
106 KOG0638 4-hydroxyphenylpyruvat 90.4 0.3 6.4E-06 40.0 3.2 131 25-157 177-338 (381)
107 cd08353 Glo_EDI_BRP_like_7 Thi 79.6 16 0.00035 25.2 7.5 57 101-157 5-70 (142)
108 PF13670 PepSY_2: Peptidase pr 78.7 7.7 0.00017 25.0 5.2 45 109-157 30-74 (83)
109 TIGR03645 glyox_marine lactoyl 76.7 22 0.00048 25.7 7.8 56 101-158 6-79 (162)
110 PF07494 Reg_prop: Two compone 72.3 6.9 0.00015 19.1 2.8 16 137-152 5-20 (24)
111 cd07249 MMCE Methylmalonyl-CoA 71.2 27 0.00059 23.1 6.8 53 102-157 3-56 (128)
112 cd06587 Glo_EDI_BRP_like This 70.8 23 0.0005 22.2 6.2 51 102-158 1-52 (112)
113 cd07233 Glyoxalase_I Glyoxalas 62.9 41 0.00088 22.1 6.7 53 101-156 2-58 (121)
114 cd08352 Glo_EDI_BRP_like_1 Thi 61.3 43 0.00094 21.9 7.7 53 101-156 5-58 (125)
115 PF14507 CppA_C: CppA C-termin 59.0 4.6 0.0001 27.6 0.8 45 99-153 53-100 (101)
116 PF13468 Glyoxalase_3: Glyoxal 58.2 15 0.00033 26.8 3.6 52 102-157 3-55 (175)
117 cd04882 ACT_Bt0572_2 C-termina 51.4 40 0.00086 19.7 4.2 26 99-124 39-64 (65)
118 PRK06704 RNA polymerase factor 50.2 16 0.00034 28.5 2.6 46 103-155 182-227 (228)
119 cd07241 Glo_EDI_BRP_like_3 Thi 49.3 73 0.0016 20.8 7.0 50 101-155 3-55 (125)
120 PF13176 TPR_7: Tetratricopept 48.3 18 0.00038 19.2 1.9 16 35-50 13-28 (36)
121 KOG4657 Uncharacterized conser 44.3 20 0.00042 28.1 2.3 20 36-55 146-165 (246)
122 cd07250 HPPD_C_like C-terminal 43.2 1E+02 0.0022 23.0 6.1 55 102-158 6-65 (191)
123 PF08445 FR47: FR47-like prote 42.9 70 0.0015 20.6 4.5 28 26-55 55-82 (86)
124 cd04883 ACT_AcuB C-terminal AC 38.2 78 0.0017 19.0 4.1 25 102-126 46-70 (72)
125 PF08379 Bact_transglu_N: Bact 37.0 55 0.0012 20.7 3.3 22 139-160 48-69 (82)
126 PF11520 Cren7: Chromatin prot 36.6 57 0.0012 19.9 3.0 17 137-153 36-53 (60)
127 COG0456 RimI Acetyltransferase 35.5 79 0.0017 22.4 4.3 28 27-56 128-155 (177)
128 PLN03042 Lactoylglutathione ly 33.0 2.1E+02 0.0045 21.4 7.4 28 101-128 29-57 (185)
129 COG4841 Uncharacterized protei 32.9 1.4E+02 0.0031 19.9 4.7 65 38-131 7-71 (95)
130 PRK11478 putative lyase; Provi 32.9 1.5E+02 0.0032 19.6 7.2 26 101-126 8-34 (129)
131 cd08342 HPPD_N_like N-terminal 32.1 1.7E+02 0.0036 20.0 7.3 26 102-127 3-29 (136)
132 TIGR01643 YD_repeat_2x YD repe 31.4 91 0.002 16.7 3.3 22 137-158 15-36 (42)
133 COG5397 Uncharacterized conser 31.0 57 0.0012 26.6 3.0 59 101-163 159-218 (349)
134 TIGR02382 wecD_rffC TDP-D-fuco 30.8 54 0.0012 24.2 2.9 28 22-53 156-183 (191)
135 COG4747 ACT domain-containing 29.8 65 0.0014 22.8 2.8 29 99-127 108-136 (142)
136 PF13351 DUF4099: Protein of u 28.0 1.2E+02 0.0027 19.7 3.8 26 139-164 56-81 (85)
137 PF13420 Acetyltransf_4: Acety 27.5 1.3E+02 0.0028 20.8 4.2 32 21-56 109-140 (155)
138 PF02208 Sorb: Sorbin homologo 26.1 25 0.00054 20.3 0.2 17 31-49 18-34 (47)
139 cd04906 ACT_ThrD-I_1 First of 25.2 1.7E+02 0.0036 18.7 4.1 29 99-127 40-72 (85)
140 PF03197 FRD2: Bacteriophage F 25.0 1.6E+02 0.0035 20.0 3.9 41 7-49 61-101 (102)
141 PF00379 Chitin_bind_4: Insect 23.4 1.5E+02 0.0033 17.0 3.3 18 140-157 30-47 (52)
142 smart00459 Sorb Sorbin homolog 21.7 88 0.0019 18.5 1.9 30 15-50 9-38 (50)
143 PLN02367 lactoylglutathione ly 21.6 4.1E+02 0.0088 20.9 7.4 28 101-128 77-105 (233)
144 smart00671 SEL1 Sel1-like repe 21.5 94 0.002 15.6 2.0 12 36-47 20-31 (36)
145 PRK10146 aminoalkylphosphonic 21.4 62 0.0013 22.1 1.6 16 36-53 121-136 (144)
146 COG0483 SuhB Archaeal fructose 20.9 1.9E+02 0.0041 22.8 4.4 32 115-149 54-90 (260)
147 cd04908 ACT_Bt0572_1 N-termina 20.5 2E+02 0.0044 17.0 4.2 25 101-125 41-65 (66)
148 PF06185 YecM: YecM protein; 20.1 2.5E+02 0.0055 21.3 4.6 29 99-127 34-64 (185)
No 1
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=149.55 Aligned_cols=131 Identities=36% Similarity=0.529 Sum_probs=109.2
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcc---cccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKR---KAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGC 101 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~---~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~ 101 (165)
+++|+|.+.+ |+++|++||+++||++...+...+++ ..+...++++|+.|.+++..||++|..+...+....+..+
T Consensus 1 ~l~PYl~f~g-n~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 1 TLSPYLFFNG-NAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeE
Confidence 3689999987 99999999999999999888744321 0111235899999999999999999987643233445667
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 102 VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
+|.+.++|++..++++.+.|+++++++++++| |.|++.|+||||+.|+|.+....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fw---G~r~G~v~D~fGv~W~l~~~~~~ 134 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFW---GDRYGQVTDPFGVVWMLNTPVES 134 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCc---ccceEEEECCCCCEEEEecCccC
Confidence 88999999999999999999999999999999 99999999999999999887643
No 2
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.89 E-value=3.1e-21 Score=135.31 Aligned_cols=118 Identities=24% Similarity=0.268 Sum_probs=95.6
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc---cccCCccEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA---AQTVGTGCV 102 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~---~~~~~~~~~ 102 (165)
++|.|.|+ |+++|++||+++||+++......+ ++ .+.++.+.+++..+++......... ....+++.+
T Consensus 1 ~~p~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~----~~---~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 71 (122)
T cd08355 1 VWPTLRYR--DAAAAIDWLTDAFGFEERLVVPDD----DG---GVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQG 71 (122)
T ss_pred CeEEEEEC--CHHHHHHHHHHhcCCEEEEEEeCC----CC---cEEEEEEEECCEEEEEecCCCcccccccccCCCceEE
Confidence 46889998 999999999999999997664211 12 3567888888877877655432111 123456789
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
++|.|+|+++++++++++|+++..+|...+| |.+.++|+|||||+|+|.+
T Consensus 72 ~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~---g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 72 VYVVVDDVDAHYERARAAGAEILREPTDTPY---GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEECCHHHHHHHHHHCCCEEeeCccccCC---CcEEEEEECCCCCEEEEec
Confidence 9999999999999999999999999999999 9999999999999999975
No 3
>PRK10148 hypothetical protein; Provisional
Probab=99.88 E-value=3.4e-21 Score=140.90 Aligned_cols=126 Identities=26% Similarity=0.358 Sum_probs=101.5
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEee---cCcc-------cccC---CCCceEEEEEEECCeEEEEecCCCCC
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSV---ETKR-------KAEQ---ELPLISCAQLEIAGSTFLVSDVSGDS 91 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~---~~~~-------~~~g---~~~~v~~~~l~~g~~~l~l~d~~~~~ 91 (165)
++.|+|.+.+ |+++|++||+++||.++..... .|.. ..++ ..++|+|+.|++++..||++|..+..
T Consensus 2 ~l~pyL~f~g-~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~ 80 (147)
T PRK10148 2 PLSPYLSFAG-NCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG 80 (147)
T ss_pred eeEEEEEeCC-CHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc
Confidence 4889999964 9999999999999999876542 2210 0011 13579999999999999999876432
Q ss_pred cccccCCccEEEEEEeCCHHH--HHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 92 AAAQTVGTGCVLCLETEDVEA--AVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 92 ~~~~~~~~~~~i~~~V~dv~~--~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
....++++|+|.++|.++ .+.+++++|+++++++.+.+| |.++++|+||||+.|+|....
T Consensus 81 ---~~~~~~~~l~l~~~d~ee~~~~~~aLa~gg~v~mpl~~~~w---g~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 ---KAHYSGFTLVLDTQDVEEGKRWFDNLAANGKIEMAWQETFW---AHGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred ---CCCCCeEEEEEECCCHHHHHHHHHHhhCCCEEEecchhcch---hhccEEEECCCCCEEEEEecC
Confidence 223358899999999988 467788999999999999999 999999999999999998864
No 4
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.88 E-value=7.7e-21 Score=132.45 Aligned_cols=119 Identities=37% Similarity=0.561 Sum_probs=98.2
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCc-ccccCCccEEE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSA-AAQTVGTGCVL 103 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~-~~~~~~~~~~i 103 (165)
++.|+|.|+ |++++++||+++||+++......+ + ..+.++.+..++..+++.+..+... +....++.+++
T Consensus 2 ~~~~~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~----~---~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd07246 2 TVTPYLIVR--DAAAAIDFYKKAFGAEELERMPDD----D---GRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSL 72 (122)
T ss_pred ceeEEEEEC--CHHHHHHHHHHhhCCEEEEEEeCC----C---CCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEE
Confidence 578999999 999999999999999998765322 1 2467888888888888876544311 11234567899
Q ss_pred EEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 104 CLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 104 ~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+|.|+|++++++++++.|++++.+|...+| |.+.++|+||+||+|+|++
T Consensus 73 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 73 HLYVEDVDATFARAVAAGATSVMPPADQFW---GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred EEEeCCHHHHHHHHHHCCCeEecCcccccc---cceEEEEECCCCCEEEEec
Confidence 999999999999999999999999998889 9999999999999999986
No 5
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.87 E-value=1.4e-20 Score=134.07 Aligned_cols=122 Identities=24% Similarity=0.352 Sum_probs=96.2
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCccc---ccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRK---AEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~---~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
+.|+|.+.. |+++|++||+++||+++......++.. .+...++++|+.+++++..|++.+..+... ...+++++
T Consensus 1 l~p~L~~~~-~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~--~~~~~~~~ 77 (128)
T cd06588 1 ITPYLWFNG-NAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFP--FTFGNGIS 77 (128)
T ss_pred CeeEEeeCC-CHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCC--CCCCCCEE
Confidence 468999932 999999999999999998776322110 012235799999999999999988765422 23567889
Q ss_pred EEEEeCCH---HHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 103 LCLETEDV---EAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 103 i~~~V~dv---~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
++|.|+|+ ++++++ +++|++++++|...+| |.++++|+||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~-l~~~g~~~~~~~~~~~---g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEA-LSEGGTVLMPLQKTFW---SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHH-HhcCCeEeccchhcCc---ccccEEEECCCCCEEEeC
Confidence 99999974 455676 5677799999999999 999999999999999984
No 6
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=6e-19 Score=123.60 Aligned_cols=114 Identities=30% Similarity=0.384 Sum_probs=85.4
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCC------CC-Ccc--cccC
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS------GD-SAA--AQTV 97 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~------~~-~~~--~~~~ 97 (165)
.+.|.|+ |++++++||+++||++..... + .+ .|..+..++..+.+.... +. ..+ ....
T Consensus 3 ~~~l~v~--D~~~s~~FY~~~lG~~~~~~~--~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (125)
T cd07264 3 YTIIYVE--DVEKTLEFYERAFGFERRFLH--E----SG-----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQP 69 (125)
T ss_pred eEEEEEc--CHHHHHHHHHHhhCCeEEeec--C----CC-----cEEEecCCcEEEEEEcccccccccccCccCCccccC
Confidence 4566677 999999999999999986432 1 11 255555555555443221 00 000 1234
Q ss_pred CccEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 98 GTGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 98 ~~~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
+.+++++|.|+|+++++++++++|++++.+|...+| |.++++++|||||.|+|+++
T Consensus 70 ~~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 70 PAGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPW---GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCC---CcEEEEEECCCCCEEEEecC
Confidence 556899999999999999999999999999999999 99999999999999999874
No 7
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.82 E-value=9.5e-19 Score=121.87 Aligned_cols=114 Identities=23% Similarity=0.282 Sum_probs=88.4
Q ss_pred ceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCC---cccccCC
Q 031118 24 TGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDS---AAAQTVG 98 (165)
Q Consensus 24 ~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~---~~~~~~~ 98 (165)
+++.+.|.++ |+++|++||+++|||++.... + .+..+..++ ..|.+....... .+....+
T Consensus 1 ~~~~~~l~v~--D~~~s~~FY~~~lG~~~~~~~--~-----------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 65 (119)
T cd08359 1 TSLYPVIVTD--DLAETADFYVRHFGFTVVFDS--D-----------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQG 65 (119)
T ss_pred CcceeEEEEC--CHHHHHHHHHHhhCcEEEecc--C-----------cEEEEecCCCceEEEEccCCCCCCcchhcccCC
Confidence 4688999999 999999999999999987541 1 155555544 344443322111 0123456
Q ss_pred ccEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 99 TGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 99 ~~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.+++++|.|+|++++++++.++|++++.+|...+| |.+.++|+||+||+|+|++
T Consensus 66 ~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 66 QGLILNFEVDDVDAEYERLKAEGLPIVLPLRDEPW---GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred ceEEEEEEECCHHHHHHHHHhcCCCeeeccccCCC---cceEEEEECCCCCEEEEEC
Confidence 67899999999999999999999999999999999 9999999999999999985
No 8
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=2.3e-18 Score=120.55 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=83.4
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCC-CC--cccccCCc
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG-DS--AAAQTVGT 99 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~-~~--~~~~~~~~ 99 (165)
|+...+.|.|+ |+++|++||+++||+++.... + . +..+. ++..|.+..... .. ......++
T Consensus 1 ~~~~~~~l~v~--D~~~a~~FY~~~lG~~~~~~~--~-----~------~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 64 (120)
T cd09011 1 MKFKNPLLVVK--DIEKSKKFYEKVLGLKVVMDF--G-----E------NVTFE-GGFALQEGYSWLEGISKADIIEKSN 64 (120)
T ss_pred CEEEEEEEEEC--CHHHHHHHHHHhcCCEEeecc--C-----c------eEEEe-ccceeccchhhhccCCcccccccCC
Confidence 55667888888 999999999999999986432 1 1 11111 222222211110 00 00123456
Q ss_pred cEEEEEEeCCHHHHHHHHHHCCC-eEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 100 GCVLCLETEDVEAAVAKAVSAGA-VAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 100 ~~~i~~~V~dv~~~~~~~~~~G~-~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
..+++|.|+|+++++++++++|+ +++.+|...+| |.+.++|+|||||+|+|.++
T Consensus 65 ~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~---g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 65 NFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPW---GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred ceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCC---ccEEEEEECCCCCEEEEecc
Confidence 68999999999999999999987 68889999999 99999999999999999875
No 9
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.79 E-value=3.8e-18 Score=119.54 Aligned_cols=110 Identities=19% Similarity=0.113 Sum_probs=86.1
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
++.+.|.|+ |+++|++||++ |||+..... + . .+..+..++..|++...... .......+++
T Consensus 3 ~~~~~l~v~--Dl~~s~~FY~~-lG~~~~~~~--~-----~-----~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~ 63 (120)
T cd08350 3 TTIPNLPSR--DLDATEAFYAR-LGFSVGYRQ--A-----A-----GYMILRRGDLELHFFAHPDL----DPATSPFGCC 63 (120)
T ss_pred cccceeEcC--CHHHHHHHHHH-cCCEEEecC--C-----C-----CEEEEEcCCEEEEEEecCcC----CCCCCcceEE
Confidence 577889998 99999999999 999987542 1 1 26666667777777543211 1123457899
Q ss_pred EEeCCHHHHHHHHHHCCCeE-------EecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 105 LETEDVEAAVAKAVSAGAVA-------EGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i-------~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
|.|+|+++++++++++|+++ +.+|...+| |.+.++|+||+||+|+|.++
T Consensus 64 ~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~---g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 64 LRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPW---GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred EEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCC---ceeEEEEECCCCCEEEeecC
Confidence 99999999999999999974 456777788 99999999999999999875
No 10
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=4e-18 Score=118.81 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=84.5
Q ss_pred ceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEE
Q 031118 24 TGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVL 103 (165)
Q Consensus 24 ~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i 103 (165)
+++.++|.++ |+++|++||++ |||++.... + .++.+..++..+++...... ....+.++
T Consensus 1 ~~~~~~l~v~--Dl~~s~~FY~~-LGf~~~~~~--~-----------~~~~l~~~~~~l~l~~~~~~-----~~~~~~~~ 59 (113)
T cd08356 1 KSIRPFIPAK--DFAESKQFYQA-LGFELEWEN--D-----------NLAYFRLGNCAFYLQDYYVK-----DWAENSML 59 (113)
T ss_pred Ccceeccccc--cHHHHHHHHHH-hCCeeEecC--C-----------CEEEEEcCCEEEEeecCCCc-----ccccCCEE
Confidence 4678999999 99999999987 999987542 1 15667778877777553211 12345689
Q ss_pred EEEeCCHHHHHHHHHHCCCeEE-----ecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 104 CLETEDVEAAVAKAVSAGAVAE-----GELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 104 ~~~V~dv~~~~~~~~~~G~~i~-----~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+|.|+|+++++++++++|+.+. .++...+| |.+.++|+||+||+|+|.+
T Consensus 60 ~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~---g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 60 HLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPW---WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred EEEECCHHHHHHHHHHcCCcccccceecCccccCC---CcEEEEEECCCccEEEeeC
Confidence 9999999999999999998642 45566678 9999999999999999974
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.79 E-value=1.1e-17 Score=120.16 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc-----cccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA-----AQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~-----~~~~~~~~~ 102 (165)
+.|.|+ |++++++||+++|||++..+...+ + ..+..+..++..|++........+ ........|
T Consensus 4 i~i~V~--D~e~s~~FY~~vLGf~~~~~~~~~-----~----~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~h 72 (136)
T cd08342 4 VEFYVG--NAKQLASWFSTKLGFEPVAYHGSE-----D----KASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCD 72 (136)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCeEEEecCCC-----c----eEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEE
Confidence 345555 999999999999999987653211 1 123444456666776543221110 112233459
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
++|.|+|+++++++++++|++++.+|...+| |.++++++||+|+.|+|++....
T Consensus 73 ia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~---~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 73 VAFRVDDAAAAYERAVARGAKPVQEPVEEPG---ELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEEEeCCHHHHHHHHHHcCCeEccCceecCC---eEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999999999998888 99999999999999999997654
No 12
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.76 E-value=3.9e-17 Score=112.02 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=86.8
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEe
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLET 107 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V 107 (165)
|.|.|+ |++++++||+++||+++..... + . .+..+..++..+++....... .....+..+++|.|
T Consensus 2 ~~i~v~--d~~~s~~FY~~~lg~~~~~~~~-~-----~-----~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~ 66 (112)
T cd08349 2 PVLPVS--DIERSLAFYRDVLGFEVDWEHP-E-----P-----GYAFLSRGGAQLMLSEHDGDE--PVPLGRGGSVYIEV 66 (112)
T ss_pred CEEEEC--CHHHHHHHHHhccCeEEEEEcC-C-----C-----cEEEEEeCCEEEEEeccCCCC--CCCCCCcEEEEEEe
Confidence 677888 9999999999999999875531 1 1 256666677777775543211 11345677999999
Q ss_pred CCHHHHHHHHHHCCCe-EEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 108 EDVEAAVAKAVSAGAV-AEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 108 ~dv~~~~~~~~~~G~~-i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+|++++++++.+.|++ +..++...+| |.+.++++||+||.|+|++
T Consensus 67 ~~~~~~~~~l~~~G~~~~~~~~~~~~~---g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 67 EDVDALYAELKAKGADLIVYPPEDQPW---GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred CCHHHHHHHHHHcCCcceecCccCCCc---ccEEEEEECCCCCEEEecC
Confidence 9999999999999999 7778888888 8899999999999999975
No 13
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=8.2e-17 Score=111.22 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=82.9
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC-eEEEEecCCCCCcccccCCccEEEEEEe
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG-STFLVSDVSGDSAAAQTVGTGCVLCLET 107 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~-~~l~l~d~~~~~~~~~~~~~~~~i~~~V 107 (165)
++.+.+.|++++++||+++||+++..... + .+ .+..+..++ ..+.+....+. ....++..+++|.|
T Consensus 3 hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~----~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~v 69 (114)
T cd07247 3 WFELPTTDPERAKAFYGAVFGWTFEDMGD-G----GG-----DYAVFSTGGGAVGGLMKAPEP---AAGSPPGWLVYFAV 69 (114)
T ss_pred EEEeeCCCHHHHHHHHHhccCceeeeccC-C----CC-----ceEEEEeCCccEEEEecCCCC---CCCCCCeEEEEEEe
Confidence 44444559999999999999998864421 1 11 255666664 33333333221 12345778999999
Q ss_pred CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 108 EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 108 ~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+|+++++++++++|+++..+|...++ +.+.++|+||+||.|+|++
T Consensus 70 ~di~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 70 DDVDAAAARVEAAGGKVLVPPTDIPG---VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CCHHHHHHHHHHCCCEEEeCCcccCC---cEEEEEEECCCCCEEEeEC
Confidence 99999999999999999999988887 7799999999999999975
No 14
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=99.75 E-value=2e-16 Score=111.33 Aligned_cols=112 Identities=29% Similarity=0.467 Sum_probs=83.5
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEE-EEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVE-IGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVL 103 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~-~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i 103 (165)
++.|+|.+.+ ++++|++||+++||... ....+.|+... ...++++|+.|.+++..||+.|..+. ...+++++|
T Consensus 2 ki~pyL~F~g-~a~eA~~fY~~vf~~~~i~~~~~~~~~~~-~~~~~v~ha~l~i~g~~lm~~D~~~~----~~~~~~~sl 75 (116)
T PF06983_consen 2 KITPYLWFNG-NAEEALEFYKEVFGGSEIMTFGDYPDDEP-EWKDKVMHAELTIGGQKLMASDGGPD----FPFGNNISL 75 (116)
T ss_dssp SEEEEEEESS--HHHHHHHHHHHSTTEEEEEEEE-TTTCT-THTTSEEEEEEEETTEEEEEEEESTS--------TTEEE
T ss_pred ceEEEEEeCC-CHHHHHHHHHHHcCCCEEEEEeECCCCCC-CCCCcEEEEEEEECCeEEEEECCCCC----CCCCCcEEE
Confidence 5899999985 99999999999999644 33334453211 13468999999999999999887643 456788999
Q ss_pred EEEeCCHHHH--HHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 104 CLETEDVEAA--VAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 104 ~~~V~dv~~~--~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
+|.++|.+++ +...|+.||+ ++ + ++++|+|.||..|+|+
T Consensus 76 ~i~~~~~ee~~~~f~~Ls~gG~--------~~---~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 76 CIECDDEEEIDRIFDKLSEGGQ--------WF---S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEESSHHHHHHHHHHHHTTTE--------TC---C-EEEEEE-TTS-EEEEE
T ss_pred EEEcCCHHHHHHHHHHHHcCCC--------cc---c-eeEEEEeCCCCEEEeC
Confidence 9999998887 5666788887 44 5 9999999999999985
No 15
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.74 E-value=9.9e-17 Score=109.56 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=77.2
Q ss_pred EEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCccEEEEE
Q 031118 30 LLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 30 l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
|.|+ |++++++||+++||+++.... + + +..+..+. ....+...... ........+++|
T Consensus 1 l~v~--d~~~a~~FY~~~lg~~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 62 (108)
T PF12681_consen 1 LPVS--DLEAAAAFYEDVLGFEVVFDD--P-----D------YVDFSLGFRFHDGVIEFLQFPDP---PGPPGGGFHLCF 62 (108)
T ss_dssp EEES--SHHHHHHHHHHTTTSEEEEEE--T-----S------EEEEEETEEEEEEEEEEEEEESS---SSSSSSEEEEEE
T ss_pred CccC--CHHHHHHHHHHhcCCEEEEeC--C-----C------eEEEEeccchhhhhHHHccCCcc---ccCCCceeEEEE
Confidence 4566 999999999999999998742 2 1 23333321 11122111111 234567789999
Q ss_pred EeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 106 ETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 106 ~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
.|+|+++++++++++|++++.+|...+| |.+.++++||+||.|+|+
T Consensus 63 ~v~dv~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 63 EVEDVDALYERLKELGAEIVTEPRDDPW---GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp EESHHHHHHHHHHHTTSEEEEEEEEETT---SEEEEEEE-TTS-EEEEE
T ss_pred EEcCHHHHHHHHHHCCCeEeeCCEEcCC---CeEEEEEECCCCCEEEeC
Confidence 9999999999999999999999999999 999999999999999986
No 16
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1.2e-16 Score=110.60 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=81.2
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCeEEEEecCCCCCcccccCCccEEEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGSTFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
..|.|+ |+++|++||+++||+++.... + .++.+.. ++..+.+........+....++..|++|.
T Consensus 2 ~~l~v~--d~~~a~~FY~~~lg~~~~~~~--~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (114)
T cd07261 2 VLLYVE--DPAASAEFYSELLGREPVELS--P-----------TFALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFM 66 (114)
T ss_pred EEEEEC--CHHHHHHHHHHHcCCCccCCC--C-----------ceEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEE
Confidence 356666 999999999999999876431 1 1555555 44566655433211112234567899999
Q ss_pred eCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 107 TED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 107 V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
|+| ++++++++.++|+++..+|...+| | +.++|+||+||+|+|++
T Consensus 67 v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~---g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 67 VDDGAAVDALYAEWQAKGVKIIQEPTEMDF---G-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred cCCHHHHHHHHHHHHHCCCeEecCccccCC---c-cEEEEECCCCCEEEeeC
Confidence 986 778899999999999999999988 8 68899999999999974
No 17
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.73 E-value=2.2e-16 Score=108.98 Aligned_cols=107 Identities=26% Similarity=0.276 Sum_probs=80.7
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC---CeEEEEecCCCCCcccccCCccEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA---GSTFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g---~~~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
+.+.|.++ |++++++||+++||++..... + . ...+..+ +..+.+..... ......|
T Consensus 2 ~~~~l~v~--Dl~~s~~FY~~~lG~~~~~~~--------~---~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 60 (112)
T cd07238 2 IVPNLPVA--DPEAAAAFYADVLGLDVVMDH--------G---W--IATFASPQNMTVQVSLATEGG------TATVVPD 60 (112)
T ss_pred ccceEecC--CHHHHHHHHHHhcCceEEEcC--------C---c--eEEEeecCCCCcEEEEecCCC------CCCCCCE
Confidence 56778888 999999999999999975421 1 0 1222221 23444432211 1123458
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
++|.|+|++++++++++.|+++..+|...+| |.+.++++||+||+|+|+++
T Consensus 61 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 61 LSIEVDDVDAALARAVAAGFAIVYGPTDEPW---GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred EEEEeCCHHHHHHHHHhcCCeEecCCccCCC---ceEEEEEECCCCCEEEEEEc
Confidence 9999999999999999999999998888889 98999999999999999975
No 18
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.73 E-value=2e-16 Score=110.64 Aligned_cols=111 Identities=22% Similarity=0.235 Sum_probs=79.7
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC-CeEEEEecCCCCC--cc--cccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA-GSTFLVSDVSGDS--AA--AQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g-~~~l~l~d~~~~~--~~--~~~~~~~~~ 102 (165)
+.|.|+ |+++|++||++ |||++..... . ..++.+..+ +..|++....... .+ +...++..+
T Consensus 4 i~l~V~--D~~~a~~FY~~-LGf~~~~~~~-------~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 69 (122)
T cd07235 4 VGIVVA--DMAKSLDFYRR-LGFDFPEEAD-------D----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIA 69 (122)
T ss_pred EEEEec--cHHHHHHHHHH-hCceecCCcC-------C----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEE
Confidence 345555 99999999975 9998753311 0 125555555 5667664432100 00 123345678
Q ss_pred EEEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 103 LCLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 103 i~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
++|.+. |+++++++++++|+++..+|.+.+| |.+.++|+|||||.|+|+.
T Consensus 70 l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 70 LAFLCETPAEVDALYAELVGAGYPGHKEPWDAPW---GQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCC---CCEEEEEECCCCCEEEEeC
Confidence 888775 7999999999999999999999999 9999999999999999973
No 19
>PRK10291 glyoxalase I; Provisional
Probab=99.71 E-value=8.8e-16 Score=108.88 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=81.3
Q ss_pred EEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCcc-EEEE
Q 031118 30 LLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGTG-CVLC 104 (165)
Q Consensus 30 l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~~-~~i~ 104 (165)
|.|+ |+++|++||+++||+++......++ . .+..+.+..++ ..+.+....+.. ....+++ .|++
T Consensus 2 l~V~--Dle~s~~FY~~~LG~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~hla 70 (129)
T PRK10291 2 LRVG--DLQRSIDFYTNVLGMKLLRTSENPE----Y---KYSLAFVGYGPETEEAVIELTYNWGVD--KYELGTAYGHIA 70 (129)
T ss_pred EEec--CHHHHHHHHHhccCCEEEEeecCCC----C---cEEEEEEccCCCCCcceEEeeecCCCC--CCcCCCCeeEEE
Confidence 4566 9999999999999999876543231 1 12233333332 223333222210 1122334 4999
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCcccccccCCc-eEEEEEcCCCCeEEEEeeecccCC
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGELAEGNGACCGE-RVGKVKDPYGFTWLICSPVKKCAG 162 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~-~~~~~~DP~G~~~~l~~~~~~~~~ 162 (165)
|.|+|+++++++++++|+++..++...++ |. +.++|+||+||.|+|++......+
T Consensus 71 f~V~d~~~~~~~l~~~G~~~~~~~~~~~~---~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 71 LSVDNAAEACEKIRQNGGNVTREAGPVKG---GTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred EEeCCHHHHHHHHHHcCCccccCCcccCC---CceEEEEEECCCCCEEEEEEccccccc
Confidence 99999999999999999999987776666 64 568899999999999997754433
No 20
>PLN02367 lactoylglutathione lyase
Probab=99.71 E-value=1.5e-15 Score=117.95 Aligned_cols=122 Identities=15% Similarity=0.174 Sum_probs=84.1
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEE------------------EEC-CeEEE
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQL------------------EIA-GSTFL 83 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l------------------~~g-~~~l~ 83 (165)
..--++.|.|+ |++++++||+++||+++..+.+.++. .+....| ..+ +..|.
T Consensus 74 ~~~~HtmlRVk--Dle~Sl~FYt~vLGm~ll~r~d~pe~-------~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LE 144 (233)
T PLN02367 74 YIMQQTMYRIK--DPKASLDFYSRVLGMSLLKRLDFPEM-------KFSLYFMGYEDTASAPTDPTERTVWTFGQKATIE 144 (233)
T ss_pred cEEEEEEEEeC--CHHHHHHHHHHhcCCEEeEEEecCCC-------cEEEEEeecCCccccccccccceeeccCCCCEEE
Confidence 44444555555 99999999999999999887765531 1112222 122 24666
Q ss_pred EecCCCCCc-c---cccC----CccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 84 VSDVSGDSA-A---AQTV----GTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 84 l~d~~~~~~-~---~~~~----~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
|........ + .... +.++ ||+|.|+|++++++++.+.|++++.+|....+ .++++++|||||+|+|+
T Consensus 145 Lt~n~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~----~riaFIkDPDGn~IEL~ 220 (233)
T PLN02367 145 LTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM----KGIAFIKDPDGYWIEIF 220 (233)
T ss_pred EecCCCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc----eEEEEEECCCCCEEEEE
Confidence 654332110 0 0111 1344 99999999999999999999999988876544 37899999999999999
Q ss_pred eee
Q 031118 155 SPV 157 (165)
Q Consensus 155 ~~~ 157 (165)
+..
T Consensus 221 e~~ 223 (233)
T PLN02367 221 DLK 223 (233)
T ss_pred ecc
Confidence 865
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.70 E-value=2.5e-15 Score=104.47 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=78.4
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCccEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGTGCVL 103 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~~~~i 103 (165)
..|.++ |++++++||+++||+++......+. + ......+..++ ..|.+....+...+.....+..|+
T Consensus 4 v~i~v~--d~~~a~~fY~~~lG~~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i 74 (121)
T cd07233 4 TMLRVK--DLEKSLDFYTDVLGMKLLRRKDFPE----G---KFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHL 74 (121)
T ss_pred EEEEec--CcHHHHHHHHhccCCeEEEEEecCC----C---ceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEE
Confidence 445555 9999999999999999876542221 1 12223343322 345443322110111122344699
Q ss_pred EEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 104 CLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 104 ~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
+|.|+|+++++++++++|+++..+|... + +.++++|+||+||+|+|+
T Consensus 75 ~~~v~did~~~~~l~~~G~~~~~~~~~~-~---~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 75 AFAVDDVYAACERLEEMGVEVTKPPGDG-G---MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EEEeCCHHHHHHHHHHCCCEEeeCCccC-C---CceEEEEECCCCCEEEeC
Confidence 9999999999999999999999988766 4 668999999999999985
No 22
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=2e-15 Score=103.91 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=79.9
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC---CeEEEEecCCCCCcc-cccCCccEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA---GSTFLVSDVSGDSAA-AQTVGTGCVLC 104 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g---~~~l~l~d~~~~~~~-~~~~~~~~~i~ 104 (165)
.|.+. |++++++||+++||+++....... .+ ..+..+... +..|++........+ ....+...+++
T Consensus 3 ~l~v~--d~~~~~~fY~~~lG~~~~~~~~~~----~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (119)
T cd07263 3 SLYVD--DQDKALAFYTEKLGFEVREDVPMG----GG----FRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLV 72 (119)
T ss_pred eEEeC--CHHHHHHHHHhccCeEEEEeeccC----CC----cEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEE
Confidence 45555 999999999999999987654211 11 224444332 345666543321110 12334566999
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
|.|+|+++++++++++|+++..+|....+ + +.++++||+||+|+|++
T Consensus 73 ~~v~di~~~~~~l~~~g~~~~~~~~~~~~---~-~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 73 LATDDIDATYEELKARGVEFSEEPREMPY---G-TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred EEehHHHHHHHHHHhCCCEEeeccccCCC---c-eEEEEECCCCCEEEEeC
Confidence 99999999999999999999988865555 5 89999999999999974
No 23
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.2e-15 Score=105.93 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=77.1
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC-CeEEEEecCCC--CCc--c--cccCCc
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA-GSTFLVSDVSG--DSA--A--AQTVGT 99 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g-~~~l~l~d~~~--~~~--~--~~~~~~ 99 (165)
.+.|.|+ |+++|++||++ |||+.......+ + ...+..+ +..|++..... ... + ....++
T Consensus 3 ~v~l~V~--Dl~~s~~FY~~-lGf~~~~~~~~~-----~------~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd09012 3 FINLPVK--DLEKSTAFYTA-LGFEFNPQFSDE-----K------AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKST 68 (124)
T ss_pred EEEeecC--CHHHHHHHHHH-CCCEEccccCCC-----C------eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCC
Confidence 4455566 99999999986 999876432111 1 2333444 45666644211 000 0 123445
Q ss_pred cEEEEEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 100 GCVLCLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 100 ~~~i~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
..|++|.|+ ++++++++++++|+++..+|...+| + +.++|+|||||+|+|++
T Consensus 69 ~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~---~-~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 69 EVLISLSADSREEVDELVEKALAAGGKEFREPQDHGF---M-YGRSFADLDGHLWEVLW 123 (124)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc---e-EEEEEECCCCCEEEEEE
Confidence 679999998 4778899999999999999988876 5 67899999999999985
No 24
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=5e-15 Score=106.33 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=81.1
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCccc---ccCC-CCceEEEEEEE--CCeEEEEecCC-CCC--cc--cc
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRK---AEQE-LPLISCAQLEI--AGSTFLVSDVS-GDS--AA--AQ 95 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~---~~g~-~~~v~~~~l~~--g~~~l~l~d~~-~~~--~~--~~ 95 (165)
+..|.|+ |++++++||++ |||++..+...+... ..+. ........+.. ++..|.+.... +.. .+ ..
T Consensus 6 Hi~i~v~--Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 6 NVGIVVR--DLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eEEEEeC--CHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 4455555 99999999998 999886553221100 0010 01122333433 33455544321 111 10 11
Q ss_pred cCCc-cEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 96 TVGT-GCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 96 ~~~~-~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
..+. ..||+|.|+|+++++++++++|++++.++....+ |.+.++|+||+|+.|||++.
T Consensus 83 ~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~---~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 83 VNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYEN---SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCC---CeEEEEEECCCCCEEEeeec
Confidence 2223 3499999999999999999999999988777777 88999999999999999985
No 25
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.67 E-value=5.6e-15 Score=104.78 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=87.7
Q ss_pred CCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe-EEEEecCCCCCcccccCCc
Q 031118 21 ASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS-TFLVSDVSGDSAAAQTVGT 99 (165)
Q Consensus 21 ~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~-~l~l~d~~~~~~~~~~~~~ 99 (165)
++|+..+.+.-+.+.|++++++||.++||++.....++.+ ..+..+..++. .--.....+. ....++
T Consensus 4 ~~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~---------~~y~~f~~~~~~~gG~l~~~~~---~~p~~~ 71 (127)
T COG3324 4 AGEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE---------MRYAVFPADGAGAGGGLMARPG---SPPGGG 71 (127)
T ss_pred cccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC---------ceEEEEECCCccccceeccCCc---CCCCCC
Confidence 3455555565555559999999999999999865432211 22555544431 1111111111 011278
Q ss_pred cEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 100 GCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 100 ~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++.++|.|+|+++.++|+.++|++|+.++...+. +.+.+.+.||.||+|.|+++.
T Consensus 72 ~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~---~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 72 GWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPG---GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CEEEEEecCChHHHHHHHHhcCCeEEecccccCC---ceEEEEEECCCCCEEEEeecC
Confidence 8999999999999999999999999999999996 669999999999999999864
No 26
>PRK11478 putative lyase; Provisional
Probab=99.66 E-value=7.5e-15 Score=103.45 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=76.8
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC-eEEEEecCC-CCCcccccCCcc-EEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG-STFLVSDVS-GDSAAAQTVGTG-CVLC 104 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~-~~l~l~d~~-~~~~~~~~~~~~-~~i~ 104 (165)
.++.+.++|++++++||+++||+++..+...+. .. .+ ...+..++ ..|.+.... +...+......+ .||+
T Consensus 8 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~---~~--~~--~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 8 HHIAIIATDYAVSKAFYCDILGFTLQSEVYREA---RD--SW--KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCEecccccccc---cc--cc--eeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 344555559999999999999999864321110 00 01 12222333 345443321 111111112233 4999
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
|.|+|+++++++++++|+++...+...++ |.+++||+||+||.|+|++
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYT---QKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCC---CCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998755545556 7899999999999999986
No 27
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.66 E-value=6.8e-15 Score=105.90 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=81.2
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
..++.+.++|++++.+||+++||+++..+. + ..+.+..++..+.+.... ........+...|++|.
T Consensus 5 i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~--------~-----~~~~~~~~g~~l~l~~~~-~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 5 INHICFSVSNLEKSIEFYEKVLGAKLLVKG--------R-----KTAYFDLNGLWIALNEEK-DIPRNEIHQSYTHIAFS 70 (139)
T ss_pred EEEEEEEecCHHHHHHHHHhccCCEEEeec--------C-----eeEEEecCCeEEEeeccC-CCCCccCCCCeeEEEEE
Confidence 345555555999999999999999986441 1 134456677666654321 11001111223478888
Q ss_pred eC--CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 107 TE--DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 107 V~--dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++ |++++++++.++|+++..+|...++ +.+.++|+||+||+|+|++..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~---~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER---DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC---CceEEEEECCCCCEEEEEeCC
Confidence 77 9999999999999999877777777 779999999999999998754
No 28
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=4.7e-15 Score=102.89 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=80.2
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCC---CCc-c-cccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG---DSA-A-AQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~---~~~-~-~~~~~~~~~ 102 (165)
+.|.|+ |++++.+||+++||+++... + .+ .+..+..++..+.+..... ... + .....++.+
T Consensus 2 i~l~v~--d~~~a~~FY~~~lg~~~~~~---~----~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd07251 2 ITLGVA--DLARSRAFYEALLGWKPSAD---S----ND-----GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGIT 67 (121)
T ss_pred eeEeeC--CHHHHHHHHHHhcCceeccc---C----CC-----ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceE
Confidence 346666 99999999999999988644 1 11 1344455776666543211 001 1 122345566
Q ss_pred EEEEe---CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 103 LCLET---EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 103 i~~~V---~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+++.+ +|++++++++++.|+++..+|...+| |.+.++++||+||+|+|..
T Consensus 68 ~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 68 LAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFW---GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCC---CceEEEEECCCCCEEEEee
Confidence 77665 57888999999999999998888888 8899999999999999975
No 29
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.65 E-value=5.8e-15 Score=103.54 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=80.6
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc----cccCCccE-E
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA----AQTVGTGC-V 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~----~~~~~~~~-~ 102 (165)
..|.|+ |++++++||+++||++.......+. . ......+..++..|.+........+ ....+.+. |
T Consensus 5 v~l~v~--D~~~s~~FY~~~lG~~~~~~~~~~~----~---~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~ 75 (128)
T TIGR03081 5 VGIAVP--DLEEAAKLYEDVLGAHVSHIEEVPE----Q---GVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHH 75 (128)
T ss_pred EEEEeC--CHHHHHHHHHHHhCCCCccceeCCC----C---CcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEE
Confidence 445566 9999999999999998865432221 1 1223445556666666443211110 01113344 8
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEec-CcccccccCCceEEEE--EcCCCCeEEEEe
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGE-LAEGNGACCGERVGKV--KDPYGFTWLICS 155 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~-p~~~~~~~~G~~~~~~--~DP~G~~~~l~~ 155 (165)
++|.|+|++++++++.++|++++.+ |...+| |.+.+++ +||+|+.||+.+
T Consensus 76 i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~---g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 76 IAIEVDDIEAALETLKEKGVRLIDEEPRIGAG---GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEEcCCHHHHHHHHHHCCCcccCCCCccCCC---CCEEEEecccccCcEEEEecC
Confidence 9999999999999999999999875 777778 8777788 899999999864
No 30
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=1.8e-14 Score=100.07 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=77.3
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCeEEEEecCC-CCCccc-ccCCccEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGSTFLVSDVS-GDSAAA-QTVGTGCVLCL 105 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~~l~l~d~~-~~~~~~-~~~~~~~~i~~ 105 (165)
++.+.+.|++++++||+++||+++......+. .. .....+.. ++..|.+.... ....+. .......|++|
T Consensus 6 hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~----~~---~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 6 HVAIICSDYEKSKEFYVEILGFKVIREVYRPE----RG---SYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred eEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC----CC---cEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 33444449999999999999999865532111 10 11112222 34444432211 111111 12223348999
Q ss_pred EeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 106 ETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 106 ~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.|+|+++++++++++|+++..++....+ |.+.++++||+||.|+|.+
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFT---GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCC---ceEEEEEECCCCCEEEecC
Confidence 9999999999999999999887766667 8889999999999999975
No 31
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=1.3e-14 Score=101.02 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=76.8
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCeEEEEecCCCCCcc--cccCCccEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGSTFLVSDVSGDSAA--AQTVGTGCVL 103 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~~l~l~d~~~~~~~--~~~~~~~~~i 103 (165)
+..|.|+ |++++++||+++||+++......+. .+ .....+.. ++..|.+......... ....++..|+
T Consensus 4 Hi~l~v~--dl~~s~~FY~~~lg~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi 74 (125)
T cd07241 4 HVAIWTK--DLERMKAFYVTYFGATSNEKYHNPR---KG----FESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHL 74 (125)
T ss_pred EEEEEec--CHHHHHHHHHHHhCCEeeceEeCCC---CC----ceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEE
Confidence 3455555 9999999999999998764432221 11 11122333 3345555432111000 1122334589
Q ss_pred EEEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 104 CLETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 104 ~~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
+|.|+| +++.+++++++|+++..+|...++ |.+.++++||+||.|+|.
T Consensus 75 ~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~---g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 75 AFSVGSKEAVDELTERLRADGYLIIGEPRTTGD---GYYESVILDPEGNRIEIT 125 (125)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEeCceecCC---CeEEEEEECCCCCEEEeC
Confidence 999964 788899999999999988876667 767788999999999984
No 32
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.64 E-value=4.6e-14 Score=102.80 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCC
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVG 98 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~ 98 (165)
++-.++.|.++ |+++|++||+++||+++....+.+. + ......+..++ ..+.+....... +.....
T Consensus 16 ~~i~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 85 (150)
T TIGR00068 16 RRLLHTMLRVG--DLDKSLDFYTEVLGMKLLRKRDFPE----M---KFSLAFLGYGDETSAAVIELTHNWGTE-KYDLGN 85 (150)
T ss_pred ceEEEEEEEec--CHHHHHHHHHHhcCCEEEEEeccCC----C---ceEEEEecCCCCCCccEEEEeecCCCC-cccCCC
Confidence 34455555566 9999999999999999876543231 1 11222232221 233332221110 011122
Q ss_pred ccEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 99 TGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 99 ~~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
...|++|.|+|++++++++.++|++++.+|...++ .+.+.+||+||+||.|+|++....
T Consensus 86 g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRALGGNVVREPGPVKG--GTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHHcCCccccCCcccCC--CceEEEEEECCCCCEEEEEECCch
Confidence 34589999999999999999999999988865554 034688999999999999987643
No 33
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=6.2e-15 Score=102.98 Aligned_cols=113 Identities=20% Similarity=0.138 Sum_probs=71.8
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEE--ecCC-CCC--cc-cc--cCCc
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLV--SDVS-GDS--AA-AQ--TVGT 99 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l--~d~~-~~~--~~-~~--~~~~ 99 (165)
..|.|+ |+++|++||+++||+++.... +. +..+..++..+.+ .... ... .. .. ....
T Consensus 3 i~l~v~--Dl~~s~~FY~~~lG~~~~~~~-------~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (125)
T cd08357 3 LAIPVR--DLEAARAFYGDVLGCKEGRSS-------ET------WVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVP 67 (125)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCEEeecc-------CC------cccccccCcEEEEEeccCCCcccccCCCCCCccCCc
Confidence 344555 999999999999999986431 11 2233333433332 1111 000 00 01 1122
Q ss_pred cEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccc-cCCceEEEEEcCCCCeEEEEe
Q 031118 100 GCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGA-CCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 100 ~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~-~~G~~~~~~~DP~G~~~~l~~ 155 (165)
++.+++.++|+++++++++++|+++..+|....+. -.+.+.++|+||+||+|+|..
T Consensus 68 h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 68 HFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 34456778999999999999999999877653220 004689999999999999975
No 34
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=2.5e-14 Score=99.37 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=79.0
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc--cccCCccEEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA--AQTVGTGCVLCL 105 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~--~~~~~~~~~i~~ 105 (165)
..|.++ |++++++||+++||++....... ..+..+..++..+.+........+ ........|++|
T Consensus 7 i~l~v~--d~~~s~~Fy~~~lG~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 7 VVLTVA--DIEATLDFYTRVLGMEVVRFGEE-----------VGRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred EEEEec--CHHHHHHHHHHHhCceeeccccc-----------CCceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 344555 99999999999999988654210 014455666666666543321111 122234459999
Q ss_pred EeCC-HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 106 ETED-VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 106 ~V~d-v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.+++ ++++++++.++|++++.+|...+....+.+.++|+||+||+|++++
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 9999999999999998877654320003478999999999999986
No 35
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.63 E-value=2.3e-14 Score=100.79 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=77.1
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC-CeEEEEecCCCCCcccccCCccE
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA-GSTFLVSDVSGDSAAAQTVGTGC 101 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g-~~~l~l~d~~~~~~~~~~~~~~~ 101 (165)
|+...+.|.|+ |+++|++||+++||++..... + . +..+..+ +..|.+.... ......
T Consensus 3 ~~~~hv~l~v~--Dl~~s~~FY~~~lG~~~~~~~--------~---~--~~~~~~~~~~~l~~~~~~-------~~~~~~ 60 (123)
T cd08351 3 VTLNHTIVPAR--DREASAEFYAEILGLPWAKPF--------G---P--FAVVKLDNGVSLDFAQPD-------GEIPPQ 60 (123)
T ss_pred ceEeEEEEEcC--CHHHHHHHHHHhcCCEeeecc--------C---C--EEEEEcCCCcEEEEecCC-------CCCCcc
Confidence 44455555555 999999999999999886531 1 0 2223332 3345444321 112345
Q ss_pred EEEEEeC--CHHHHHHHHHHCCCeEEecCccc-------ccccCCceEEEEEcCCCCeEEEEee
Q 031118 102 VLCLETE--DVEAAVAKAVSAGAVAEGELAEG-------NGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 102 ~i~~~V~--dv~~~~~~~~~~G~~i~~~p~~~-------~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
|++|.|+ |++++++++.+.|+++..+|... .+ |.+.++|+||+||.|+|++.
T Consensus 61 h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~---g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 61 HYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTND---GGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCC---CeeEEEEECCCCCEEEEEec
Confidence 7777776 69999999999999998777654 45 77999999999999999986
No 36
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.63 E-value=9.8e-15 Score=99.30 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=76.0
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe-EEEEecCCCCCcccccCCccEEEEEEe
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS-TFLVSDVSGDSAAAQTVGTGCVLCLET 107 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~-~l~l~d~~~~~~~~~~~~~~~~i~~~V 107 (165)
|+.+.++|++++++||+++||++.......+ . ....+..++. .+.+.............+...|++|.|
T Consensus 3 Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-----~-----~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v 72 (114)
T cd07245 3 HVALRVPDLEASRAFYTDVLGLEEGPRPPFL-----F-----PGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRV 72 (114)
T ss_pred eEEEecCCHHHHHHHHHHccCCcccCcCCCC-----C-----CceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEe
Confidence 3444445999999999999999876432111 0 1223344443 555543322110011234456999999
Q ss_pred CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEE
Q 031118 108 EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLI 153 (165)
Q Consensus 108 ~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l 153 (165)
+|++++++++.++|++++.++.. .+ +.+.++|+||+|++|+|
T Consensus 73 ~d~~~~~~~l~~~g~~~~~~~~~-~~---~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 73 DDLDAFRARLKAAGVPYTESDVP-GD---GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred CCHHHHHHHHHHcCCCcccccCC-CC---CccEEEEECCCCCEEeC
Confidence 99999999999999999887765 45 66889999999999986
No 37
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.62 E-value=6.5e-14 Score=106.00 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEE-----------------EEECCeEEE
Q 031118 21 ASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQ-----------------LEIAGSTFL 83 (165)
Q Consensus 21 ~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~-----------------l~~g~~~l~ 83 (165)
.|.+--++.|.|. |+++|++||+++|||++..+...++ +. ..+.+.. +..++..|.
T Consensus 24 ~~~~~~Ht~i~V~--Dle~Si~FY~~vLG~~~~~r~~~~~----~~-~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lE 96 (185)
T PLN03042 24 KGYIMQQTMFRIK--DPKASLDFYSRVLGMSLLKRLDFPE----MK-FSLYFLGYEDSETAPTDPPERTVWTFGRKATIE 96 (185)
T ss_pred CCcEEEEEEEeeC--CHHHHHHHHHhhcCCEEEEEEEcCC----Cc-eEEEEEecCCcccCCcchhhcccccccCCCEEE
Confidence 3445555555555 9999999999999999987754332 10 0111111 011233555
Q ss_pred EecCCCCCc-c-------cccCCcc-EEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 84 VSDVSGDSA-A-------AQTVGTG-CVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 84 l~d~~~~~~-~-------~~~~~~~-~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
|........ + ....+.+ .||+|.|+|++++++++.+.|+.+...|.... +.++++|+||+||+|+|+
T Consensus 97 L~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~----~~~~~fi~DPdG~~IEl~ 172 (185)
T PLN03042 97 LTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK----MKGLAFIKDPDGYWIEIF 172 (185)
T ss_pred EEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC----ceeEEEEECCCCCEEEEE
Confidence 543211100 0 0111124 48999999999999999999999997775432 347889999999999999
Q ss_pred eee
Q 031118 155 SPV 157 (165)
Q Consensus 155 ~~~ 157 (165)
+..
T Consensus 173 e~~ 175 (185)
T PLN03042 173 DLK 175 (185)
T ss_pred ECC
Confidence 854
No 38
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.62 E-value=4.3e-14 Score=104.61 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=79.8
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEee--cCc--ccc-------cCCCCceEEEEEEECC-eEEEEecCC-CCCc--
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSV--ETK--RKA-------EQELPLISCAQLEIAG-STFLVSDVS-GDSA-- 92 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~--~~~--~~~-------~g~~~~v~~~~l~~g~-~~l~l~d~~-~~~~-- 92 (165)
-|+.+.|.|+++|++||+++||+++..+.. .+. ... .+....+..+.+..++ ..|.+.... +...
T Consensus 6 ~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~~~~ 85 (162)
T TIGR03645 6 SHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQENPED 85 (162)
T ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCCCCc
Confidence 344455559999999999999998864310 010 000 0000123345555443 345554332 1110
Q ss_pred c-cccCCccEEEEEEeCCHHHHHHHHHHCCCeEEecC-cccccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 93 A-AQTVGTGCVLCLETEDVEAAVAKAVSAGAVAEGEL-AEGNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 93 ~-~~~~~~~~~i~~~V~dv~~~~~~~~~~G~~i~~~p-~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
. ........||+|.|+|+++++++++++|+++..++ ........+.+.++|+|||||.|+|+++..+
T Consensus 86 ~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 86 NFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred ccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 0 11123456999999999999999999999865543 2111100023789999999999999998754
No 39
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=2.9e-14 Score=99.12 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=77.9
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC-eEEEEecCCCCC--c---ccccCCc
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG-STFLVSDVSGDS--A---AAQTVGT 99 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~-~~l~l~d~~~~~--~---~~~~~~~ 99 (165)
+.++|.+. |++++++||+++|||++... + ++ .++.+..++ ..+.+....... . +......
T Consensus 2 ~~~~l~v~--d~~~s~~Fy~~~lG~~~~~~---~----~~-----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd08354 2 LETALYVD--DLEAAEAFYEDVLGLELMLK---E----DR-----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSG 67 (122)
T ss_pred eEEEEEeC--CHHHHHHHHHhccCCEEeec---C----CC-----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCC
Confidence 45677777 99999999999999998753 1 11 145556655 444443321100 0 0111223
Q ss_pred cEEEEEEe--CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 100 GCVLCLET--EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 100 ~~~i~~~V--~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
..|++|.+ +|++++++++.++|+++..++. ..+ +.+.++|+||+||+|+|+++
T Consensus 68 ~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~---~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 68 PGHFAFAIPAEELAEWEAHLEAKGVAIESEVQ-WPR---GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred ccEEEEEcCHHHHHHHHHHHHhcCCceecccc-CCC---CeeEEEEECCCCCEEEEecC
Confidence 34777777 5799999999999999876664 455 66889999999999999863
No 40
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.61 E-value=2.4e-14 Score=102.16 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=77.7
Q ss_pred EEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEeCC
Q 031118 30 LLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLETED 109 (165)
Q Consensus 30 l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V~d 109 (165)
+.+.+.|++++++||+++||+++.... + . ...+..++..+.+........ ....+...||+|.|++
T Consensus 4 V~l~V~Dl~~a~~FY~~~LG~~~~~~~--~-----~------~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hiaf~v~~ 69 (131)
T cd08363 4 MTFSVSNLDKSISFYKHVFMEKLLVLG--E-----K------TAYFTIGGTWLALNEEPDIPR-NEIRQSYTHIAFTIED 69 (131)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEeccC--C-----c------cceEeeCceEEEEEccCCCCc-CCcCccceEEEEEecH
Confidence 334444999999999999999876431 1 1 233455666665543221100 1112334589998874
Q ss_pred --HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 110 --VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 110 --v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++++++++.++|+++..++....+ +.+.++|+||+||+|+|++..
T Consensus 70 ~dld~~~~~l~~~G~~~~~~~~~~~~---~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 70 SEFDAFYTRLKEAGVNILPGRKRDVR---DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHHcCCcccCCCccccC---cceEEEEECCCCCEEEEecCc
Confidence 999999999999998766665555 668999999999999999865
No 41
>PRK06724 hypothetical protein; Provisional
Probab=99.61 E-value=3.7e-14 Score=101.28 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=75.2
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhh---CCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCc
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAF---GAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGT 99 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vl---G~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~ 99 (165)
|..-+.++.+.|.|+++|++||+++| |++..... .+.-++..|.+...... . ....+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~-----------------~~~~g~~~l~l~~~~~~-~--~~~~g 63 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV-----------------AYSTGESEIYFKEVDEE-I--VRTLG 63 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE-----------------eeeCCCeeEEEecCCcc-c--cCCCC
Confidence 55556677776779999999999977 44432111 01112233443321110 0 11233
Q ss_pred cEEEEEEe---CCHHHHHHHHHHCCCeEEecCcccc---cccCCceEEEEEcCCCCeEEEEee
Q 031118 100 GCVLCLET---EDVEAAVAKAVSAGAVAEGELAEGN---GACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 100 ~~~i~~~V---~dv~~~~~~~~~~G~~i~~~p~~~~---~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
..|++|.| +++++++++++++|++++.+|...+ + |.+.++|+|||||.|+|...
T Consensus 64 ~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~---g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 64 PRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSE---GYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCC---CEEEEEEECCCCCEEEEEeC
Confidence 45999998 6799999999999999988876543 5 66888999999999999876
No 42
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=2.8e-14 Score=98.16 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=73.1
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEe-
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLET- 107 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V- 107 (165)
.|.|+ |++++++||+++||+++.... ++ ...+..++..|.+...... ....+...|++|.|
T Consensus 3 ~l~v~--d~~~s~~Fy~~~lg~~~~~~~-------~~------~~~~~~~~~~l~~~~~~~~---~~~~~~~~hiaf~v~ 64 (113)
T cd08345 3 TLIVK--DLNKSIAFYRDILGAELIYSS-------SK------EAYFELAGLWICLMEEDSL---QGPERTYTHIAFQIQ 64 (113)
T ss_pred eEEEC--CHHHHHHHHHHhcCCeeeecc-------Cc------eeEEEecCeEEEeccCCCc---CCCCCCccEEEEEcC
Confidence 45566 999999999999999886542 11 2233445555555332211 01122334888888
Q ss_pred -CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 108 -EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 108 -~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+|++++++++.++|+++..++....+ +.+.++++||+||+|+|+.
T Consensus 65 ~~d~~~~~~~l~~~G~~~~~~~~~~~~---~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 65 SEEFDEYTERLKALGVEMKPERPRVQG---EGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHHHHHcCCccCCCccccCC---CceEEEEECCCCCEEEEEe
Confidence 47888999999999998755433334 4589999999999999985
No 43
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.58 E-value=1.1e-13 Score=92.96 Aligned_cols=110 Identities=28% Similarity=0.332 Sum_probs=81.4
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEeC
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLETE 108 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V~ 108 (165)
.|.+. |++++++||+++||++....... . ...+..+..++..|.+....+... ....+...|++|.|+
T Consensus 3 ~i~~~--d~~~~~~fy~~~lg~~~~~~~~~------~---~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~~v~ 70 (112)
T cd06587 3 GLTVS--DLEAAVAFYEEVLGFEVLFRNGN------G---GAEFAVLGLGGTRLELFEGDEPAP-APSGGGGVHLAFEVD 70 (112)
T ss_pred ceeeC--CHHHHHHHHHhccCCEEEEeecc------C---CEEEEEEecCCceEEEecCCCCCC-cccCCCeeEEEEECC
Confidence 34455 99999999999999988765321 0 123556666667777766543210 012344569999999
Q ss_pred CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEE
Q 031118 109 DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLI 153 (165)
Q Consensus 109 dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l 153 (165)
|++++++++.++|+.+..++....+ +.+.++++||+|+.|+|
T Consensus 71 ~~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 71 DVDAAYERLKAAGVEVLGEPREEPW---GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred CHHHHHHHHHHcCCcccCCCcCCCC---CcEEEEEECCCCcEEeC
Confidence 9999999999999999988764556 77999999999999986
No 44
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=2.2e-13 Score=94.99 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=76.7
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
++++.|.++ |++++.+||+++||++..... + + +..+..++. .+.+..... ...+...|
T Consensus 2 ~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h 61 (120)
T cd07254 2 RFHVALNVD--DLEASIAFYSKLFGVEPTKVR--D-----D------YAKFLLEDPRLNFVLNERPG-----APGGGLNH 61 (120)
T ss_pred cEEEEEEeC--CHHHHHHHHHHHhCCeEeccc--C-----C------eeEEEecCCceEEEEecCCC-----CCCCCeeE
Confidence 467777777 999999999999999875442 1 1 222333332 333332211 11134458
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 103 LCLETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 103 i~~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++|.|+| +++.++++.++|.++..+|....+ ..+.+.+|++||+||+|+|++..
T Consensus 62 ~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 62 LGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCC-YAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccc-cCCcceEEEECCCCCEEEEEEee
Confidence 9999988 677899999999999877755432 00247899999999999999764
No 45
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=2.6e-13 Score=96.72 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=76.8
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEE
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
|..-+-++.+.++|++++++||+++||+++..+.. ... +.. ... ..+..++..|.+....+ ...+...|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~-~~~-~~~--~~~--~~~~~~~~~i~l~~~~~-----~~~~~~~H 69 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSG-DKT-FSL--SKE--KFFLIGGLWIAIMEGDS-----LQERTYNH 69 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecc-ccc-ccc--cce--eEEEcCCeEEEEecCCC-----CCCCCceE
Confidence 33334556666669999999999999998765421 000 000 000 11223555555543221 11223458
Q ss_pred EEEEeC--CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 103 LCLETE--DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 103 i~~~V~--dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++|.|+ +++++++++.++|..+..+. ...+ ++.+.+||+||+||.|||....
T Consensus 70 iaf~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~--~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 70 IAFKISDSDVDEYTERIKALGVEMKPPR-PRVQ--GEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EEEEcCHHHHHHHHHHHHHCCCEEecCC-cccc--CCceEEEEECCCCCEEEEecCC
Confidence 999998 79999999999999876433 3233 0348999999999999998754
No 46
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=2.5e-13 Score=94.96 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=73.4
Q ss_pred EEEecCCHHHHHHHHHHh---hCCEEEEEeecCcccccCCCCceEEEEEEEC--CeEEEEecCCCCCcccccCCccEEEE
Q 031118 30 LLVEAPKATDAVQFYKTA---FGAVEIGRSVETKRKAEQELPLISCAQLEIA--GSTFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 30 l~v~~~D~~~a~~FY~~v---lG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g--~~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
+.+.+.|+++|++||+++ ||++..... + ++ +..+..+ +..+.+....+.. ....++..||+
T Consensus 4 v~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~----~~------~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~hi~ 69 (123)
T cd07262 4 VTLGVNDLERARAFYDAVLAPLGIKRVMED--G----PG------AVGYGKGGGGPDFWVTKPFDGE--PATAGNGTHVA 69 (123)
T ss_pred EEEecCcHHHHHHHHHHHHhhcCceEEeec--C----Cc------eeEeccCCCCceEEEeccccCC--CCCCCCceEEE
Confidence 344444999999999999 588876442 1 11 2222222 3456654432110 11233457999
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
|.|+| ++++++++.++|+++..+|...++...+.+.++|+||+||.|+|+.
T Consensus 70 f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 70 FAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred EECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 99987 6777999999999998888765430003357899999999999974
No 47
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.54 E-value=6.1e-13 Score=93.07 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=72.6
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-C---CeEEEEecCCCCCcccccCCccE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-A---GSTFLVSDVSGDSAAAQTVGTGC 101 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g---~~~l~l~d~~~~~~~~~~~~~~~ 101 (165)
-.+.|.|+ |+++|++||+++||+++.... + .+ ...+.. + ...+.+... ...+..
T Consensus 6 ~hv~l~v~--Dl~~s~~FY~~~lG~~~~~~~--~----~~------~~~~~~~~~~~~~~~~l~~~--------~~~~~~ 63 (122)
T cd07265 6 GHVQLRVL--DLEEAIKHYREVLGLDEVGRD--D----QG------RVYLKAWDEFDHHSIVLREA--------DTAGLD 63 (122)
T ss_pred eEEEEEeC--CHHHHHHHHHhccCCEeeeec--C----Cc------eEEEEccCCCcccEEEeccC--------CCCCee
Confidence 34455555 999999999999999876542 1 11 122222 1 123444211 112345
Q ss_pred EEEEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 102 VLCLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 102 ~i~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|++|.|. |++++++++.++|+++...|....+ +..+.+||+||+||+|+|++..
T Consensus 64 hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 64 FMGFKVLDDADLEKLEARLQAYGVAVERIPAGELP--GVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCC--CCceEEEEECCCCCEEEEEEec
Confidence 8999997 6888899999999998876654333 0247899999999999998753
No 48
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.1e-12 Score=91.75 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=74.5
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
...|.++ |++++.+||+++||+++.... + . ...+..++ ..|.+..............+..|++
T Consensus 5 hi~l~v~--d~~~~~~Fy~~~lG~~~~~~~--~-----~------~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~ 69 (125)
T cd07255 5 AVTLRVA--DLERSLAFYQDVLGLEVLERT--D-----S------TAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFA 69 (125)
T ss_pred EEEEEEC--CHHHHHHHHHhccCcEEEEcC--C-----C------EEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEE
Confidence 3445555 999999999999999987542 1 1 33344444 3454533321100012334456999
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|.|.| ++++++++.++|+++.. +....+ + +.+||+||+||+|+|.+..
T Consensus 70 f~v~~~~~v~~~~~~l~~~g~~~~~-~~~~~~---~-~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 70 ILLPSRADLAAALRRLIELGIPLVG-ASDHLV---S-EALYLSDPEGNGIEIYADR 120 (125)
T ss_pred EECCCHHHHHHHHHHHHHcCCceec-cccccc---e-eEEEEECCCCCEEEEEEec
Confidence 99975 88889999999998754 444444 4 7889999999999998654
No 49
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.54 E-value=7.3e-13 Score=94.12 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=76.7
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
..|.|+ |+++|++||+++||++.......+ + ......+..++. .|.+... ...+...|++|
T Consensus 3 v~l~V~--dl~~a~~Fy~~~lG~~~~~~~~~~-----~---~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~hl~~ 65 (131)
T cd08343 3 VVLRTP--DVAATAAFYTEVLGFRVSDRVGDP-----G---VDAAAFLRCDEDHHDLALFPG-------PERPGLHHVAF 65 (131)
T ss_pred EEEEcC--CHHHHHHHHHhcCCCEEEEEEccC-----C---ceeEEEEEcCCCcceEEEEcC-------CCCCCeeEEEE
Confidence 345555 999999999999999986553211 1 112334444432 2222211 01234558999
Q ss_pred EeCCHH---HHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 106 ETEDVE---AAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 106 ~V~dv~---~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
.|+|++ ++++++.++|++++.+|...++ .+.++++|+||+||+|+|++....
T Consensus 66 ~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~--~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 66 EVESLDDILRAADRLAANGIQIEFGPGRHGP--GNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred EcCCHHHHHHHHHHHHHcCCeeEECCCccCC--CCcEEEEEECCCCCEEEEEcCCcc
Confidence 999875 5689999999999988876554 035788999999999999976643
No 50
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.53 E-value=9.3e-13 Score=92.57 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=76.7
Q ss_pred EEEEEecCCHHHHHHHHHHhh---CCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc-cccCCcc-EE
Q 031118 28 PQLLVEAPKATDAVQFYKTAF---GAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA-AQTVGTG-CV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vl---G~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~-~~~~~~~-~~ 102 (165)
..|.++ |++++.+||+++| |+++.... + .+ ..+... .++..|.+........+ ....+++ .|
T Consensus 5 v~i~v~--d~~~~~~Fy~~~l~~~G~~~~~~~--~----~~----~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~g~~h 71 (128)
T cd07242 5 VELTVR--DLERSRAFYDWLLGLLGFEEVKEW--E----DG----RSWRAG-DGGTYLVLQQADGESAGRHDRRNPGLHH 71 (128)
T ss_pred EEEEeC--CHHHHHHHHHHHHhhcCCEEEEee--c----cC----ceEEec-CCceEEEEEecccCCCcccccCCcCeeE
Confidence 345555 9999999999999 99987653 1 11 112222 24556666543321100 1122333 48
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeEEecCccc---ccccCCceEEEEEcCCCCeEEEEee
Q 031118 103 LCLETED---VEAAVAKAVSAGAVAEGELAEG---NGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 103 i~~~V~d---v~~~~~~~~~~G~~i~~~p~~~---~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
++|.|+| ++++++++.++|+.+..++... .. +.+.++++||+||+|+|+.+
T Consensus 72 ia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 72 LAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGP---GYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCC---cEEEEEEECCCCcEEEEEeC
Confidence 9999975 7888999999999999877653 22 55899999999999999875
No 51
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.53 E-value=8.3e-13 Score=91.10 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=75.8
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC-C--eEEEEecCCCCCcccccCCccEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA-G--STFLVSDVSGDSAAAQTVGTGCVL 103 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g-~--~~l~l~d~~~~~~~~~~~~~~~~i 103 (165)
.+.|.++ |++++++||+++||+++.... + . ...+..+ + ..|.+.... .....|+
T Consensus 5 hv~l~v~--d~~~~~~FY~~~lg~~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~~~--------~~~~~h~ 61 (117)
T cd07240 5 YAELEVP--DLERALEFYTDVLGLTVLDRD--A-----G------SVYLRCSEDDHHSLVLTEGD--------EPGVDAL 61 (117)
T ss_pred EEEEecC--CHHHHHHHHHhccCcEEEeec--C-----C------eEEEecCCCCcEEEEEEeCC--------CCCceeE
Confidence 3445555 999999999999999987552 1 1 2333333 2 234443221 1244689
Q ss_pred EEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 104 CLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 104 ~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
+|.|. ++++.++++.++|+++...|...++ +.+.++++||+||+|+++..
T Consensus 62 ~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 62 GFEVASEEDLEALAAHLEAAGVAPEEASDPEPG---VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceEEcCccCCC---CceEEEEECCCCCEEEEEEc
Confidence 99997 5788899999999999988876777 77999999999999999865
No 52
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.53 E-value=3.8e-13 Score=93.41 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=72.5
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EE-EEecCCCCCcccccCCccEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TF-LVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l-~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
++.+.+.|++++++||+++||++..... .+ +..+..++. .+ .+... ..+...|++|
T Consensus 6 hv~l~v~d~~~s~~FY~~~lG~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 64 (120)
T cd08362 6 GVGLGVPDLAAAAAFYREVWGLSVVAED-------DG------IVYLRATGSEHHILRLRRS--------DRNRLDVVSF 64 (120)
T ss_pred EEEEecCCHHHHHHHHHhCcCcEEEEec-------CC------EEEEECCCCccEEEEeccC--------CCCCCceEEE
Confidence 3444444999999999999999986442 11 333333322 11 12111 1123358999
Q ss_pred Ee---CCHHHHHHHHHHCCCeEEecCc--ccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 106 ET---EDVEAAVAKAVSAGAVAEGELA--EGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 106 ~V---~dv~~~~~~~~~~G~~i~~~p~--~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
.| +++++++++++++|+++..+|. ..+| +.+.++|+||+||+|+|++..
T Consensus 65 ~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~---~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 65 SVASRADVDALARQVAARGGTVLSEPGATDDPG---GGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred EeCCHHHHHHHHHHHHHcCCceecCCcccCCCC---CceEEEEECCCCCEEEEEecc
Confidence 99 4688889999999999887764 3456 778999999999999998753
No 53
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.53 E-value=6.4e-13 Score=92.46 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=73.4
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE----CCeEEEEecCCCCCc-ccccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI----AGSTFLVSDVSGDSA-AAQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~----g~~~l~l~d~~~~~~-~~~~~~~~~~ 102 (165)
+.|.|. |++++++||+++||++.......+. +. ...+..+.. ++..|.+........ .....+...|
T Consensus 5 v~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~h 76 (126)
T cd08346 5 VTLITR--DAQETVDFYTDVLGLRLVKKTVNQD----DP--GTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHH 76 (126)
T ss_pred EEEEcC--ChhHhHHHHHHccCCEEeeeEeccC----CC--ceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEE
Confidence 345555 9999999999999999876642221 10 112233322 234555543321100 0112223359
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 103 LCLETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 103 i~~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
++|.|+| ++++++++.++|+++..++.. + +.+.++|+||+||+|+|+
T Consensus 77 i~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~---~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 77 IAFSVPSEASLDAWRERLRAAGVPVSGVVDH--F---GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCcccceEee--c---ceEEEEEECCCCCEEEeC
Confidence 9999984 688899999999998765433 4 668999999999999984
No 54
>PLN02300 lactoylglutathione lyase
Probab=99.53 E-value=5.9e-13 Score=106.84 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=81.3
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--e--EEEEecCCCCCcccccCCccE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--S--TFLVSDVSGDSAAAQTVGTGC 101 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~--~l~l~d~~~~~~~~~~~~~~~ 101 (165)
-..++.+.++|++++++||+++||+++..+...+. . ......+..++ . .|.+....... ....+.++
T Consensus 24 ~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~----~---~~~~~~l~~g~~~~~~~lel~~~~~~~--~~~~~~g~ 94 (286)
T PLN02300 24 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE----E---KYTNAFLGYGPEDSNFVVELTYNYGVD--KYDIGTGF 94 (286)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC----C---cEEEEEEccCCCCCceEEEEeccCCCC--ccccCCCc
Confidence 34455555559999999999999999876543221 1 11122233321 2 23332211110 11223344
Q ss_pred -EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCC-ceEEEEEcCCCCeEEEEeee
Q 031118 102 -VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCG-ERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 102 -~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G-~~~~~~~DP~G~~~~l~~~~ 157 (165)
|++|.|+|++++++++.+.|+++..+|...++ | .+++||+||+||.|+|++..
T Consensus 95 ~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~---g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 95 GHFGIAVEDVAKTVELVKAKGGKVTREPGPVKG---GKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred cEEEEEeCCHHHHHHHHHHCCCeeecCCcccCC---CceEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999999988877766 5 47889999999999999864
No 55
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.52 E-value=6.1e-13 Score=93.20 Aligned_cols=105 Identities=20% Similarity=0.106 Sum_probs=72.7
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEe
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLET 107 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V 107 (165)
..|.++ |++++.+||+++||+++.... + + ...+..++..+.+.- .+.. ...+...|++|.+
T Consensus 5 v~l~v~--d~~~~~~FY~~vLG~~~~~~~--~-----~------~~~~~~~~~~~~l~~-~~~~---~~~~~~~hi~f~v 65 (121)
T cd07244 5 ITLAVS--DLERSVAFYVDLLGFKLHVRW--D-----K------GAYLEAGDLWLCLSV-DANV---GPAKDYTHYAFSV 65 (121)
T ss_pred EEEEEC--CHHHHHHHHHHhcCCEEEEec--C-----C------ceEEecCCEEEEEec-CCCC---CCCCCeeeEEEEe
Confidence 344455 999999999999999886542 1 1 123344565555422 1110 1223445888888
Q ss_pred --CCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 108 --EDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 108 --~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
+|++++++++.++|+.+..++.. . + +.+||+||+||.|+|++..
T Consensus 66 ~~~dl~~~~~~l~~~G~~~~~~~~~--~---~-~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 66 SEEDFASLKEKLRQAGVKEWKENTS--E---G-DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred CHHHHHHHHHHHHHcCCcccCCCCC--C---c-cEEEEECCCCCEEEEEeCC
Confidence 57999999999999998765543 2 4 6899999999999999754
No 56
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.52 E-value=7.1e-13 Score=92.60 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=77.2
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc-----cccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA-----AQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~-----~~~~~~~~~ 102 (165)
..|.++ |++++.+||+++||++.......+. .+ ...+..+..++..|.+........+ ........|
T Consensus 4 v~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~---~~---~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h 75 (128)
T cd07249 4 IGIAVP--DLEAAIKFYRDVLGVGPWEEEEVPP---EQ---GVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHH 75 (128)
T ss_pred EEEEeC--CHHHHHHHHHHhhCCCCccccccCc---cc---ccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEE
Confidence 345555 9999999999999999865532110 01 1224455557766666543221111 112233458
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcc-cccccCCceEEEEEcCC--CCeEEEEe
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAE-GNGACCGERVGKVKDPY--GFTWLICS 155 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~-~~~~~~G~~~~~~~DP~--G~~~~l~~ 155 (165)
++|.|+|++++++++.++|++++.+|.. ..+ |.+.+++.||+ |+.|+|++
T Consensus 76 ~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~---g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 76 IAFEVDDIDAALARLKAQGVRLLQEGPRIGAG---GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEEeCCHHHHHHHHHHCCCeeeccCCCccCC---CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999999998873 434 54455555555 99999974
No 57
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.51 E-value=1.3e-12 Score=94.78 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=71.2
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
|+.+.+.|++++++||+++|||++..+...+ ++. ......+..++. .+.+.. ...+.-.|++|.
T Consensus 9 Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~----~~~--~~~~~~l~~~~~~h~~~~~~--------~~~~~~~Hiaf~ 74 (143)
T cd07243 9 HCLLTGEDIAETTRFFTDVLDFYLAERVVDP----DGG--TRVGSFLSCSNKPHDIAFVG--------GPDGKLHHFSFF 74 (143)
T ss_pred EEEEecCCHHHHHHHHHHhcCCEEEEEEecC----CCC--eEEEEEEecCCCcceEEEec--------CCCCCceEEEEE
Confidence 4555555999999999999999986554222 111 001111222221 111111 112233499999
Q ss_pred eCCHHH---HHHHHHHCCCeEEecCcccc-cccCCceEEEEEcCCCCeEEEEe
Q 031118 107 TEDVEA---AVAKAVSAGAVAEGELAEGN-GACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 107 V~dv~~---~~~~~~~~G~~i~~~p~~~~-~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
|+|+++ +++++.++|..+...|.... + +.+.+||+||+||+|||..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~---~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGIT---RGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCC---CceEEEEECCCCCEEEEec
Confidence 999888 46889999999887776543 3 4588999999999999975
No 58
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.51 E-value=1.5e-12 Score=90.29 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=72.0
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC-e-EEEEecCCCCCcccccCCccEEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG-S-TFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~-~-~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
.++.+.++|+++|.+||++ ||+++..+. + + ...+..++ . .+.+.... ..+...|++|
T Consensus 5 ~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~af 63 (113)
T cd07267 5 AHVRFEHPDLDKAERFLTD-FGLEVAART--D-----D------ELYYRGYGTDPFVYVARKG-------EKARFVGAAF 63 (113)
T ss_pred EEEEEccCCHHHHHHHHHH-cCCEEEEec--C-----C------eEEEecCCCccEEEEcccC-------CcCcccEEEE
Confidence 3455555599999999999 999876441 1 1 22233332 2 22221111 1123448999
Q ss_pred EeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 106 ETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 106 ~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
.|+|.++..+.+.+.|+.+..++. .++ +.+.++|+||+||.|+|....
T Consensus 64 ~v~~~~~~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 64 EAASRADLEKAAALPGASVIDDLE-APG---GGKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred EECCHHHHHHHHHcCCCeeecCCC-CCC---CceEEEEECCCCCEEEEEecc
Confidence 999999998888888988776543 566 778999999999999998753
No 59
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.51 E-value=1.4e-13 Score=95.70 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=74.9
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCC-CCCccccc---CCccEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS-GDSAAAQT---VGTGCVLC 104 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~-~~~~~~~~---~~~~~~i~ 104 (165)
++.+.+.|++++++||+++||+++........ .........+..++..+.+.... +....... .....+++
T Consensus 4 Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 4 HIAIRVKDLEKAIDFYTDVLGFRLVEESDNDG-----EGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEESCHHHHHHHHHHTTTSEEEEEEEEES-----TTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhCCcEEeeecccc-----ccccccceeecccccceeeeeeccccccccccccccccceeEE
Confidence 34444449999999999999999987754110 01123455555555444332221 11110010 01334666
Q ss_pred EEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceE-EEEEcCCCCeEEE
Q 031118 105 LETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERV-GKVKDPYGFTWLI 153 (165)
Q Consensus 105 ~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~-~~~~DP~G~~~~l 153 (165)
+.+. |++++++++.+.|.++..+|....+ +... +|++||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYF---GSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHST---TCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCC---CCEEEEEEECCCCCEEEC
Confidence 6665 5667799999999999999888777 6555 4799999999997
No 60
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.51 E-value=2.4e-12 Score=91.38 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=74.6
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC---CeEEEEecCCCCCcccccCCccEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA---GSTFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g---~~~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
++.+.+.|++++++||+++||+++..... . ..+..+..+ +..|.+........ ....+...|++|
T Consensus 4 hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-------~----~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~f 71 (134)
T cd08348 4 HVVLYVRDLEAMVRFYRDVLGFTVTDRGP-------L----GGLVFLSRDPDEHHQIALITGRPAAP-PPGPAGLNHIAF 71 (134)
T ss_pred EEEEEecCHHHHHHHHHHhcCCEEEeecc-------C----CcEEEEEecCCCceEEEEEecCCCCC-CCCCCCceEEEE
Confidence 34444449999999999999998865421 0 013333333 23454433321100 012233458999
Q ss_pred EeCCHH---HHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeeccc
Q 031118 106 ETEDVE---AAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKKC 160 (165)
Q Consensus 106 ~V~dv~---~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~~ 160 (165)
.|+|.+ ++++++++.|+++..++.. . +.+.++++||+||+|+|++...+.
T Consensus 72 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~-~----~~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 72 EVDSLDDLRDLYERLRAAGITPVWPVDH-G----NAWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred EeCCHHHHHHHHHHHHHCCCCccccCCC-C----ceeEEEEECCCCCEEEEEEcCCCC
Confidence 999866 4689999999998866532 2 348899999999999999876543
No 61
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.51 E-value=1.6e-12 Score=91.72 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
+.++.+.++|+++|.+||+++||+++..+. + . ...+..++ ..|.+.... +...+++
T Consensus 7 l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~-----~------~~~l~~~~~~~~i~l~~~~---------~~~~~ia 64 (124)
T cd08361 7 IAYVRLGTRDLAGATRFATDILGLQVAERT--A-----K------ATYFRSDARDHTLVYIEGD---------PAEQASG 64 (124)
T ss_pred eeEEEEeeCCHHHHHHHHHhccCceeccCC--C-----C------eEEEEcCCccEEEEEEeCC---------CceEEEE
Confidence 345555555999999999999999875431 1 1 12233332 234443211 2335799
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcc---cccccCCceEEEEEcCCCCeEEEEeeecc
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAE---GNGACCGERVGKVKDPYGFTWLICSPVKK 159 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~---~~~~~~G~~~~~~~DP~G~~~~l~~~~~~ 159 (165)
|.|+| ++++++++.++|+++...+.. ..+ +.++++|+||+||.|+|......
T Consensus 65 f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~---~~~~~~f~DPdG~~iE~~~~~~~ 122 (124)
T cd08361 65 FELRDDDALESAATELEQYGHEVRRGTAEECELRK---VKAFIAFRDPSGNSIELVVRPSH 122 (124)
T ss_pred EEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCC---cceEEEEECcCCCEEEEEEeeec
Confidence 99986 888899999999998765542 233 55788999999999999876543
No 62
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.50 E-value=1.2e-12 Score=96.58 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=73.4
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC---CeEEEEecCCCCCcccccCCccEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA---GSTFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g---~~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
..|.|+ |++++.+||+++||+++..+.. + ....+..+ +..|.+.............+...||+
T Consensus 5 I~i~V~--Dle~s~~FY~~~LG~~~~~~~~-------~-----~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hia 70 (157)
T cd08347 5 VTLTVR--DPEATAAFLTDVLGFREVGEEG-------D-----RVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVA 70 (157)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCEEEeeeC-------C-----EEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEE
Confidence 345555 9999999999999999875531 1 01112222 44565544321100011223344999
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|.|+| ++++++++.+.|..+. ++....+ .+.+||+||+||.|+|++..
T Consensus 71 f~v~d~~dvd~~~~~L~~~Gv~~~-~~~~~~~----~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 71 FRVPDDEELEAWKERLEALGLPVS-GIVDRFY----FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred EECCCHHHHHHHHHHHHHCCCCcc-ccccccc----EEEEEEECCCCcEEEEEECC
Confidence 99998 8889999999999754 4444433 37899999999999999854
No 63
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.50 E-value=1.2e-12 Score=91.59 Aligned_cols=108 Identities=18% Similarity=0.073 Sum_probs=72.0
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
.+.|.|+ |+++|++||+++||+++..+. + .+ ...+..++ ..|.+.... .....|++
T Consensus 5 ~v~l~v~--Dl~~s~~FY~~~LG~~~~~~~--~----~~------~~~~~~~~~~~~~~l~~~~--------~~~~~~~~ 62 (120)
T cd07252 5 YLGVESS--DLDAWRRFATDVLGLQVGDRP--E----DG------ALYLRMDDRAWRIAVHPGE--------ADDLAYAG 62 (120)
T ss_pred EEEEEeC--CHHHHHHHHHhccCceeccCC--C----CC------eEEEEccCCceEEEEEeCC--------CCceeEEE
Confidence 3445555 999999999999999875431 1 11 22233333 234443221 12334789
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCccc--ccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEG--NGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~--~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
|.+++ +++.++++.++|+.+...|... .+ ++.+.++|+||+||.|+|....+
T Consensus 63 f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~~~~~~~DPdG~~iE~~~~~~ 119 (120)
T cd07252 63 WEVADEAALDALAARLRAAGVAVEEGSAELAAER--GVEGLIRFADPDGNRHELFWGPK 119 (120)
T ss_pred EEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhC--CCcEEEEEECCCCCEEEEEeccc
Confidence 99975 7788999999999998765321 12 03489999999999999987543
No 64
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.49 E-value=2e-12 Score=89.42 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=69.4
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCe--EEEEecCCCCCcccccCCccEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGS--TFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~--~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
.++.+.+.|++++.+||+ +||+++.... + ...+.. ++. .+.+.... ......+++.
T Consensus 4 ~hv~l~v~d~~~s~~FY~-~lG~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 62 (112)
T cd08344 4 DHFALEVPDLEVARRFYE-AFGLDVREEG--D------------GLELRTAGNDHRWARLLEGA------RKRLAYLSFG 62 (112)
T ss_pred eEEEEecCCHHHHHHHHH-HhCCcEEeec--C------------ceEEEecCCCceEEEeecCC------CCceeeEEEE
Confidence 345555559999999997 6999886431 1 111211 212 22232211 1122345667
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
+.++|++++++++.++|+++..++ .++ +.+.+||+||+||+|+|....
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~--~~~---~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAP--PGA---DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCC--CcC---CCCEEEEECCCCCEEEEecCC
Confidence 778999999999999999988765 344 557899999999999998644
No 65
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.48 E-value=4.5e-13 Score=93.57 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=83.6
Q ss_pred ceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCC--CCC--cc--cccC
Q 031118 24 TGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS--GDS--AA--AQTV 97 (165)
Q Consensus 24 ~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~--~~~--~~--~~~~ 97 (165)
+.+...|.|+ |++++.+||+ .|||+......+ +. .-+.+..+++.+||.... ..+ ++ +...
T Consensus 3 ~mIFvNLPVk--DL~~S~~Fy~-alGfk~Npq~sd-----e~-----a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~ 69 (133)
T COG3607 3 QMIFVNLPVK--DLEASKAFYT-ALGFKFNPQFSD-----ED-----AACMIISDNIFVMLLEEARFQTFTKRQIADTTK 69 (133)
T ss_pred eEEEEecchh--hHHHHHHHHH-HhCcccCCCccc-----cc-----ceeEEEeccEEEEEeccHHhhhhcccccccccC
Confidence 3456666666 9999999999 599988654321 11 134445566777775542 111 11 4667
Q ss_pred CccEEEEEEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 98 GTGCVLCLETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 98 ~~~~~i~~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
++.+.++|.+.+ +++...+++++||++..++.+.. ..+-..|+|||||+|++.+-
T Consensus 70 s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~g----fMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 70 SREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEG----FMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred CceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccc----cccceeeeCCCCCeEEEEEe
Confidence 788999999986 66679999999999988888763 34667999999999999864
No 66
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.47 E-value=5.8e-12 Score=89.95 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=73.2
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCccEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
++.+.+.|+++|.+||+++||+++..... . . ...+..++ ..|.+.... .....-.||+
T Consensus 6 hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-------~---~--~~~~~~~~~~~~~~i~l~~~~------~~~~g~~hia 67 (134)
T cd08360 6 HVVLFVPDVEAAEAFYRDRLGFRVSDRFK-------G---R--GAFLRAAGGGDHHNLFLIKTP------APMAGFHHAA 67 (134)
T ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEec-------C---c--EEEEECCCCCCCcEEEEecCC------CCCCcceEEE
Confidence 44444559999999999999998864421 1 0 22233321 244443321 1123344999
Q ss_pred EEeCCHHHHH---HHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 105 LETEDVEAAV---AKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~dv~~~~---~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|.|+|+++.. +++.++|.++..+|...++ .+.+.+||+||+||+|+|....
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRI--GSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCC--CccEEEEEECCCCCEEEEEccc
Confidence 9999988875 5999999998877765554 0346789999999999999643
No 67
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.46 E-value=1.6e-12 Score=95.26 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=74.2
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
|+.+.++|+++|++||+++||+++......+. .+ ......+..++. .+....... .....+.-.||+|.
T Consensus 4 Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~---~~---~~~~~~l~~~~~~~~~~~~~~~l---~~~~~~g~~Hiaf~ 74 (153)
T cd07257 4 HVVLEVPDFAASFDWYTETFGLKPSDVIYLPG---PG---NPVAAFLRLDRGEEYVDHHTLAL---AQGPESGVHHAAFE 74 (153)
T ss_pred EEEEecCCHHHHHHHHHHhcCCeEEeeEecCC---CC---CcEEEEEecCCCCCcccchHHHH---hcCCCCceeEEEEE
Confidence 34444449999999999999999865432220 01 112233333221 110000000 01112334589999
Q ss_pred eCCHHHHH---HHHHHCCCeEEecCcccccccCC-ceEEEEEcCCCCeEEEEeee
Q 031118 107 TEDVEAAV---AKAVSAGAVAEGELAEGNGACCG-ERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 107 V~dv~~~~---~~~~~~G~~i~~~p~~~~~~~~G-~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+|++++. ++++++|.++...|..... | ..++|++||+||.|||....
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~---g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHIL---GSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCC---CCCEEEEEECCCCCEEEEEcCc
Confidence 99999985 8999999999877776654 4 46679999999999998654
No 68
>PLN02300 lactoylglutathione lyase
Probab=99.46 E-value=5.3e-12 Score=101.35 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=81.4
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCc-c
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGT-G 100 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~-~ 100 (165)
.+..|.++ |++++.+||+++||+++......|+ .. .....+..++ ..+.+....+.. ....++ .
T Consensus 156 ~~~~l~~~--d~~~a~~Fy~~~lg~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~g~~~ 224 (286)
T PLN02300 156 CQVMLRVG--DLDRSIKFYEKAFGMKLLRKRDNPE----YK---YTIAMMGYGPEDKTTVLELTYNYGVT--EYTKGNAY 224 (286)
T ss_pred eeEEEEeC--CHHHHHHHHHhccCCEEEeeecccc----cc---eEEEEEecCCCCCccEEEEeecCCCC--ccccCCce
Confidence 34555555 9999999999999999875433231 10 1112222211 234333222111 112234 4
Q ss_pred EEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 101 CVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
+|++|.|+|++++++++.++|++++.+|...++. +.+.++|+||+|+.|+|.+...
T Consensus 225 ~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~--~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 225 AQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGI--NTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred eEEEEecCCHHHHHHHHHHcCCeEecCCccCCCC--ceEEEEEECCCCCEEEEEccch
Confidence 5899999999999999999999999999888761 3478999999999999998764
No 69
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=8.9e-12 Score=88.97 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=70.6
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcc-------cccCCCCceEEEEEEE----CCeEEEEecCCCCCcc
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKR-------KAEQELPLISCAQLEI----AGSTFLVSDVSGDSAA 93 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~-------~~~g~~~~v~~~~l~~----g~~~l~l~d~~~~~~~ 93 (165)
.+++.|.|+ |+++|++||+++|||++..+.+.|+. ..++ ......+.. ++..|.|...... .
T Consensus 3 ~~Hv~irV~--DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~l~~~~~~~~~~lEL~~n~~~-~- 75 (127)
T cd08358 3 ALHFVFKVG--NRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDG---KWSKTMIGYGPEDDHFVVELTYNYGI-G- 75 (127)
T ss_pred eEEEEEEeC--CHHHHHHHHHHhcCCEEEeeecCccccccccccCCCC---cEEEEEEecCCCCCccEEEeEecCCC-C-
Confidence 356666676 99999999999999998776544420 0001 111122322 2234555433221 1
Q ss_pred cccCCccEEEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 94 AQTVGTGCVLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 94 ~~~~~~~~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
+...+.+ +++|.|++. ++.+++.+.|..+...| + .+++++||||+.|+|+.
T Consensus 76 ~~~~g~~-~~hlav~~~-d~~~~l~~~Gv~~~~~~--------~-~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 76 DYELGND-FLGITIHSK-QAVSNAKKHNWPVTEVE--------D-GVYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCCCC-EEEEEEECH-HHHHHHHHCCCceecCC--------C-CEEEEECCCCCEEEEec
Confidence 1223333 677777776 55699999999877543 2 28899999999999974
No 70
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.45 E-value=4.7e-12 Score=88.21 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=72.0
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-C-C--eEEEEecCCCCCcccccCCccEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-A-G--STFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g-~--~~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
+.++.+.++|++++++||+++||+++.... + + ++.+.. + . ..+.+... ..+...|
T Consensus 5 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~h 63 (121)
T cd07266 5 LGHVELRVTDLEKSREFYVDVLGLVETEED--D-----D------RIYLRGLEEFIHHSLVLTKA--------PVAGLGH 63 (121)
T ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeccC--C-----C------eEEEEecCCCceEEEEEeeC--------CCCceeE
Confidence 345555555999999999999999976431 1 1 222221 1 1 23333221 1234558
Q ss_pred EEEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 103 LCLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 103 i~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++|.|. |++++++++.++|.++...|....+ ++.+.++++||+||+|+|++..
T Consensus 64 i~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 64 IAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEP--GQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCcccccCCcCC--CCccEEEEECCCCCEEEEEecc
Confidence 899884 6888899999999998776444333 0458999999999999998653
No 71
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.45 E-value=6e-12 Score=91.42 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=72.3
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
++.+.++|++++++||+++||+++.... . . . ...+..++ ..+.+... ..+...|++|.
T Consensus 7 Hv~i~V~Dle~s~~FY~~~LG~~~~~~~--~-----~---~--~~~l~~~~~~~~~~l~~~--------~~~~~~hiaf~ 66 (144)
T cd07239 7 HVVLNSPDVDKTVAFYEDVLGFRVSDWL--G-----D---Q--MAFLRCNSDHHSIAIARG--------PHPSLNHVAFE 66 (144)
T ss_pred EEEEECCCHHHHHHHHHhcCCCEEEEee--C-----C---e--EEEEECCCCcceEEEccC--------CCCceEEEEEE
Confidence 4444445999999999999999886432 1 0 0 22233332 22333211 12334589999
Q ss_pred eCCHHHHH---HHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 107 TEDVEAAV---AKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 107 V~dv~~~~---~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+|++++. +++.++|..+..+|..... .+.+++||+||+||.|+|++..
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGP--GDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCC--CCCEEEEEECCCCcEEEeccCc
Confidence 99988874 8999999998877654332 0457789999999999999865
No 72
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.44 E-value=1e-11 Score=92.23 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=74.0
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
...|.|+ |++++++||+++||+++......+. + ......+..++. .+.+... + ....+...||+
T Consensus 9 Hi~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~----~---~~~~~~~~~~~~~~~i~l~~~-~----~~~~~~~~hia 74 (166)
T cd09014 9 HVNLLAS--DVDANRDFMEEVLGFRLREQIRLDN----G---KEAGAWMSVSNKVHDVAYTRD-P----AGARGRLHHLA 74 (166)
T ss_pred eEEEEcC--CHHHHHHHHHHccCCEEEEEEecCC----C---ceEEEEEeCCCCceeEEEecC-C----CCCCCCceEEE
Confidence 4445555 9999999999999999865532111 1 111222333222 2333211 1 11122345899
Q ss_pred EEeCCHH---HHHHHHHHCCCeEEecCcccccccCCc-eEEEEEcCCCCeEEEEeee
Q 031118 105 LETEDVE---AAVAKAVSAGAVAEGELAEGNGACCGE-RVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~dv~---~~~~~~~~~G~~i~~~p~~~~~~~~G~-~~~~~~DP~G~~~~l~~~~ 157 (165)
|.|+|.+ ++++++.++|++++.+|....+ +. +.+|++||+||+|||....
T Consensus 75 f~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~---~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 75 YALDTREDVLRAADIFLENGIFIEAGPGKHGI---QQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred EECCCHHHHHHHHHHHHHcCCccccCCcccCC---CCceEEEEECCCCCEEEEEEcC
Confidence 9998655 6789999999998877766554 33 4689999999999998874
No 73
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.43 E-value=7.4e-12 Score=90.72 Aligned_cols=112 Identities=10% Similarity=-0.067 Sum_probs=74.1
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe-EEEEecCCCCCcccccCCccEEEEEEe
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS-TFLVSDVSGDSAAAQTVGTGCVLCLET 107 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~-~l~l~d~~~~~~~~~~~~~~~~i~~~V 107 (165)
.|.|+ |++++++||+++||+++..+.. . . .+.+...+. ........+ ...+.--||+|.|
T Consensus 4 ~l~V~--Dle~s~~Fy~~vLG~~~~~~~~-------~---~--~~~l~~~~~~~~h~~~~~~-----~~~~gl~Hiaf~v 64 (141)
T cd07258 4 VIGSE--NFEASRDSLVEDFGFRVSDLIE-------D---R--IVFMRCHPNPFHHTFAVGP-----ASSSHFHHVNFMV 64 (141)
T ss_pred EEecC--CHHHHHHHHHhcCCCEeeeeeC-------C---E--EEEEEcCCCCCcceeeecc-----CCCCceEEEEEEC
Confidence 34455 9999999999999999765421 1 1 223332221 111001111 1223445999999
Q ss_pred CCHH---HHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecccC
Q 031118 108 EDVE---AAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKKCA 161 (165)
Q Consensus 108 ~dv~---~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~~~ 161 (165)
+|.+ ++++++.++|.++..+|...+. .+.+.+||+||+|+.|+|+......+
T Consensus 65 ~~~~~v~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 65 TDIDDIGKALYRIKAHDVKVVFGPGRHPP--SDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred CCHHHHHHHHHHHHHCCCcEEeCCceECC--CCCEEEEEECCCCCEEEEEeCcceec
Confidence 8754 5689999999999888877553 05588999999999999988765544
No 74
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.42 E-value=2.1e-11 Score=89.41 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=75.6
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVL 103 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i 103 (165)
-+..|.|+ |++++++||+++||+++......+- .++. ....+.+..++ ..|.+... ...+...||
T Consensus 11 ~Hi~l~v~--Dl~~a~~FY~~~LGl~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~i~~~~~-------~~~~g~~Hi 77 (154)
T cd07237 11 GHVVLATP--DPDEAHAFYRDVLGFRLSDEIDIPL--PPGP--TARVTFLHCNGRHHSLALAEG-------PGPKRIHHL 77 (154)
T ss_pred CEEEEEeC--CHHHHHHHHHHccCCEEEEEEcccC--CCCC--cceEEEEEeCCCCCCEEEEcC-------CCCceeEEE
Confidence 34455565 9999999999999999865432110 0010 11233334333 12222111 111233489
Q ss_pred EEEeCCHH---HHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 104 CLETEDVE---AAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 104 ~~~V~dv~---~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
+|.|+|++ ++++++.++|.++..++...++ .+.+.+|++||+|+.|||....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~--~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTN--DRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCC--CCcEEEEEECCCCcEEEeccCc
Confidence 99998866 4699999999999887766553 1458899999999999998654
No 75
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.41 E-value=1.7e-11 Score=85.64 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=68.6
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC----eEEEEecCCCCCcccccCCccEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG----STFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~----~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
++.+.++|+++|.+||+++||+++..+. + . ...+...+ ..+.+... ......|++
T Consensus 9 hv~l~v~dl~~a~~FY~~~lG~~~~~~~--~-----~------~~~l~~~~~~~~~~~~l~~~--------~~~~~~h~a 67 (121)
T cd09013 9 HVELLTPKPEESLWFFTDVLGLEETGRE--G-----Q------SVYLRAWGDYEHHSLKLTES--------PEAGLGHIA 67 (121)
T ss_pred EEEEEeCCHHHHHHHHHhCcCCEEEeec--C-----C------eEEEEeccCCCccEEEEeeC--------CCCceEEEE
Confidence 4455555999999999999999886542 1 1 22222211 22333211 112334899
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|.|+| ++++++++.++|.++...+....+ | +.++|+||+||.|+|....
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~---~-~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGH---G-KAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCC---c-ceEEEECCCCCEEEEEEec
Confidence 99974 777799999999887543333333 4 6789999999999998753
No 76
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.41 E-value=2.3e-11 Score=87.03 Aligned_cols=119 Identities=19% Similarity=0.330 Sum_probs=91.4
Q ss_pred cceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEe-ecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccE
Q 031118 23 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRS-VETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGC 101 (165)
Q Consensus 23 m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~-~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~ 101 (165)
|++++++|.+.+ ++++|..||.++|--..+... ..|+....+..+.+.+++++++|..++..|..+.. ....+..+
T Consensus 3 ~~kit~~L~F~~-~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~--~f~fneA~ 79 (151)
T COG3865 3 MPKITPFLWFDG-NAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNT--SFKFNEAF 79 (151)
T ss_pred CCcceeEEEECC-cHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCc--CCCcCccE
Confidence 678999999996 999999999999988664432 23432223435689999999999988888876642 25678899
Q ss_pred EEEEEeCCHHHH---HHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 102 VLCLETEDVEAA---VAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 102 ~i~~~V~dv~~~---~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++.+.|+|.+|. +.++.+.|+. -..++|++|.+|..|+|.-+.
T Consensus 80 S~~v~~~~q~E~Drlwnal~~~g~e-------------~~~cgW~kDKfGVSWQi~p~~ 125 (151)
T COG3865 80 SFQVACDDQEEIDRLWNALSDNGGE-------------AEACGWLKDKFGVSWQIVPRV 125 (151)
T ss_pred EEEEEcCCHHHHHHHHHHHhccCcc-------------hhcceeEecccCcEEEEcHHH
Confidence 999999986665 5666677761 347899999999999998654
No 77
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.36 E-value=6.3e-11 Score=87.47 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
|+.+.++|+++|++||+++||+++......+ .+ ......+..++ ..+.+.. .......|++|.
T Consensus 6 Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~----~~---~~~~~~l~~~~~~~~i~l~~--------~~~~~~~Hiaf~ 70 (161)
T cd07256 6 HFNLRVPDVDAGLAYYRDELGFRVSEYTEDD----DG---TTWAAWLHRKGGVHDTALTG--------GNGPRLHHVAFW 70 (161)
T ss_pred EEEEecCCHHHHHHHHHhccCCEEEEEeccC----CC---cEEEEEEecCCCcceEEEec--------CCCCceeEEEEE
Confidence 4444444999999999999999886443211 11 11111122221 1122211 111233489999
Q ss_pred eCC---HHHHHHHHHHCCCeE--EecCcccc-cccCCceEEEEEcCCCCeEEEEee
Q 031118 107 TED---VEAAVAKAVSAGAVA--EGELAEGN-GACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 107 V~d---v~~~~~~~~~~G~~i--~~~p~~~~-~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
|+| ++++++++.++|+.+ ..+|.... + +.+.+||+||+||+|||...
T Consensus 71 v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~---~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 71 VPEPHNIIRTCDLLAAAGYSDRIERGPGRHGIS---NAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred cCCHHHHHHHHHHHHHcCCCcccccCCCccCCC---CceEEEEECCCCCeEEEeec
Confidence 986 666788999999863 33444332 2 45789999999999999853
No 78
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.32 E-value=9.3e-11 Score=94.45 Aligned_cols=113 Identities=11% Similarity=0.016 Sum_probs=71.7
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
+-+|.+.++|++++++||+++||+++......+. +. ......+..++. .+.+.. ....+.-.||+
T Consensus 146 i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~Hia 212 (303)
T TIGR03211 146 LDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGD----GK--EQAAAWLSVSNKAHDIAFVG-------DPEPGKLHHVS 212 (303)
T ss_pred EEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCC----Cc--EEEEEEEEcCCCCcccceec-------CCCCCceEEEE
Confidence 4565566669999999999999999865532221 11 001111222211 111110 01112244999
Q ss_pred EEeCCHHH---HHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEE
Q 031118 105 LETEDVEA---AVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLIC 154 (165)
Q Consensus 105 ~~V~dv~~---~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~ 154 (165)
|.|+|.++ +++++.++|+++..+|..... .+.+.+||+||+||+|||+
T Consensus 213 f~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 213 FFLDSWEDVLKAADVMSKNDVSIDIGPTRHGI--TRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEcCCHHHHHHHHHHHHhCCCceeeCCcccCC--CCceEEEEECCCCCEEEEe
Confidence 99997544 678999999999888765542 0247899999999999997
No 79
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.23 E-value=6.5e-10 Score=88.98 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=71.4
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
++.+.++|++++++||+++|||++......+. .++. .+....+..++. .+.+... ...+.-.|++|.
T Consensus 145 Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~--~~g~--~~~~~~l~~~~~~~~~~l~~~-------~~~~~~~Hiaf~ 213 (286)
T TIGR03213 145 HIVLRVPDVDAALAFYTEVLGFQLSDVIDLPA--GPGV--TVRPYFLHCNERHHSLAFAAG-------PSEKRLNHLMLE 213 (286)
T ss_pred EEEEEcCCHHHHHHHHHHccCCeEEEeEcccC--CCCC--cceEEEEEECCCcceEEEecC-------CCCCceEEEEEE
Confidence 44444559999999999999999865432211 0110 011223333321 2222211 112233489999
Q ss_pred eCCHHH---HHHHHHHCCCeEEecCcccc-cccCCceEEEEEcCCCCeEEEEeee
Q 031118 107 TEDVEA---AVAKAVSAGAVAEGELAEGN-GACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 107 V~dv~~---~~~~~~~~G~~i~~~p~~~~-~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+|.++ +++++.++|. +...|.... + +.+++|++||+|++|||....
T Consensus 214 v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~---~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 214 VDTLDDVGLALDRVDADGI-VASTLGRHTND---HMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred cCCHHHHHHHHHHHHHCCC-EEecCCcCCCC---CeEEEEEECCCCcEEEeecCc
Confidence 998777 6899999999 555554433 4 568899999999999998643
No 80
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.23 E-value=2.7e-10 Score=91.19 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=70.7
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC--CeEEEEecCCCCCcccccCCccEEEEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA--GSTFLVSDVSGDSAAAQTVGTGCVLCLE 106 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g--~~~l~l~d~~~~~~~~~~~~~~~~i~~~ 106 (165)
++.+.++|+++|++||+++||+++.... + .+ ..+ +..+ +..+.+.... .....+++|.
T Consensus 6 ~v~l~V~Dl~~s~~FY~~~LGl~~~~~~--~----~~----~~~--~~~~~~~~~~~l~~~~--------~~~~~~~~f~ 65 (286)
T TIGR03213 6 YLGIGVSDVDAWREFATEVLGMMVASEG--E----ND----ALY--LRLDSRAHRIAVHPGE--------SDDLAYAGWE 65 (286)
T ss_pred EEEEEeCCHHHHHHHHHhccCcccccCC--C----Cc----eEE--EEcCCCceEEEEEECC--------cCCeeeEeee
Confidence 3444444999999999999999875331 1 11 112 2333 2234443221 1123479999
Q ss_pred eCC---HHHHHHHHHHCCCeEEecCcc---cccccCCceEEEEEcCCCCeEEEEeee
Q 031118 107 TED---VEAAVAKAVSAGAVAEGELAE---GNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 107 V~d---v~~~~~~~~~~G~~i~~~p~~---~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+| ++++.+++.++|+++...|.. ..+ +.+.++|+||+||.|+|....
T Consensus 66 V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~---~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 66 VADEAGLDQVKEKLEKAGVAVTVASAAEARERG---VLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred eCCHHHHHHHHHHHHHcCCceEECCHHHhhhcc---ceEEEEEECCCCCEEEEEEcc
Confidence 998 777899999999998876532 233 458899999999999998643
No 81
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.19 E-value=9.8e-10 Score=88.50 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=70.4
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEE-ECCeEEEEecCCCCCcccccCCccEEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLE-IAGSTFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~-~g~~~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
.+.|.|+ |++++++||+++||+++..+. + . .+.+.... .+...+.+... ......|++|
T Consensus 7 Hi~l~V~--Dle~s~~FY~~~LG~~~~~~~--~-----~---~~~~~~~~~~~~~~~~l~~~--------~~~g~~hiaf 66 (303)
T TIGR03211 7 HVELRVL--DLEESLKHYTDVLGLEETGRD--G-----Q---RVYLKAWDEWDHYSVILTEA--------DTAGLDHMAF 66 (303)
T ss_pred EEEEEeC--CHHHHHHHHHHhcCCEEeeec--C-----c---eEEEEeccccccceEeeccC--------CCCceeEEEE
Confidence 4445555 999999999999999886542 1 1 11111100 11223333211 1122348999
Q ss_pred EeC---CHHHHHHHHHHCCCeEEecCccc-ccccCCceEEEEEcCCCCeEEEEeee
Q 031118 106 ETE---DVEAAVAKAVSAGAVAEGELAEG-NGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 106 ~V~---dv~~~~~~~~~~G~~i~~~p~~~-~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
.|+ |++++++++++.|+++...|... +. ..+.++|+||+||.|+|++..
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~---~g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPG---VGRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCC---cceEEEEECCCCCEEEEEEcc
Confidence 998 68888999999999988766522 22 237899999999999999854
No 82
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.19 E-value=1.1e-09 Score=87.67 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=70.2
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-C---CeEEEEecCCCCCcccccCCccEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-A---GSTFLVSDVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g---~~~l~l~d~~~~~~~~~~~~~~~~ 102 (165)
.+.|.|+ |++++++||+++||+++.... + . .+.+.. + ...+.+... ......|
T Consensus 7 hv~l~v~--Dl~~s~~FY~~vLGl~~~~~~--~-----~------~~~~~~~~~~~~~~l~l~~~--------~~~~~~h 63 (294)
T TIGR02295 7 HVELRVT--DLDKSREFYVDLLGFRETESD--K-----E------YIYLRGIEEFQHHSLVLTKA--------PSAALSY 63 (294)
T ss_pred EEEEEeC--CHHHHHHHHHHccCCEEEEec--C-----C------eEEEeccCcCCceEEEeeeC--------CCcCccE
Confidence 3445555 999999999999999986542 1 1 222221 1 112333211 1123458
Q ss_pred EEEEeC---CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 103 LCLETE---DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 103 i~~~V~---dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
++|.|+ |++++++++.++|+++...+. ++ +.+.++|+||+||.|+|+...
T Consensus 64 iaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~---~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 64 IGFRVSKEEDLDKAADFFQKLGHPVRLVRD--GG---QPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEeecC--CC---CceEEEEECCCCCEEEEEEch
Confidence 999997 678889999999999887653 23 458999999999999999754
No 83
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.18 E-value=2.9e-10 Score=92.60 Aligned_cols=106 Identities=19% Similarity=0.146 Sum_probs=75.0
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEE
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLC 104 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~ 104 (165)
.+...|.|+ |+++|.+||+++|++.. +. ++. . . .+ -+.+..|+.... +....+.+.++
T Consensus 248 ~IfVNLpV~--DL~rS~~FYt~LF~~n~-Fs--------de~---a-~-cm-~dtI~vMllt~~-----D~~~~~evLl~ 305 (357)
T PRK01037 248 TFSVVLEVQ--DLRRAKKFYSKMFGLEC-WD--------GDK---L-F-LL-GKTSLYLQQTKA-----EKKNRGTTTLS 305 (357)
T ss_pred eEEEEeeeC--CHHHHHHHHHHHhCCCC-CC--------CCc---c-c-cc-cCcEEEEEecCC-----CCCCcceEEEE
Confidence 355555555 99999999999999875 32 121 1 1 22 233455554433 24567788999
Q ss_pred EEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 105 LETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 105 ~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
|.+++ +++..++++++||+...++++. |- .-.|.|||||.|++++...
T Consensus 306 Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~-----Gf-~rsf~D~DGH~WEi~~~~~ 356 (357)
T PRK01037 306 LELECEHDFVRFLRRWEMLGGELGEQADGH-----FP-LRLVFDLDGHIWVVSCVQK 356 (357)
T ss_pred eccCCHHHHHHHHHHHHHcCCCCCCCcccc-----cC-cceeECCCCCEEEEEEEec
Confidence 99997 6667999999999877777766 43 5579999999999997653
No 84
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.12 E-value=2.5e-09 Score=85.62 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=69.1
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCe--EEEEecCCCCCcccccCCccEEEEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGS--TFLVSDVSGDSAAAQTVGTGCVLCL 105 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~--~l~l~d~~~~~~~~~~~~~~~~i~~ 105 (165)
-++.+.++|+++|++||+++||+++......+ .+ ......+..++. .+.+.. ...+...|++|
T Consensus 138 ~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Hiaf 202 (294)
T TIGR02295 138 DHFNVFVPDVQRALRFYKEELGFRVTEYTEDD----EG---NLAAAWLHRKGGVHDIALTN--------GNGPRLHHIAY 202 (294)
T ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC----CC---cEEEEEEecCCCcCceEeec--------CCCCceeeEEE
Confidence 34444445999999999999999986543211 11 111111111111 121111 11123449999
Q ss_pred EeCCHH---HHHHHHHHCCCe--EEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 106 ETEDVE---AAVAKAVSAGAV--AEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 106 ~V~dv~---~~~~~~~~~G~~--i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
.|+|.+ +.+++++++|.. +...|..... .+.+++|++||+||+|||++..
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~--~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGV--SNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCC--CcceEEEEECCCCCEEEEEecc
Confidence 999955 458899999987 5555654332 0236789999999999998744
No 85
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.1e-09 Score=79.69 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=78.0
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccc----cC---------CCCceEEEEEEECCeEEEEecCCCC---
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKA----EQ---------ELPLISCAQLEIAGSTFLVSDVSGD--- 90 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~----~g---------~~~~v~~~~l~~g~~~l~l~d~~~~--- 90 (165)
.+.+.|. |+.+++.||++++|+.+....+.++..+ .+ ..+... ....+....|.+...+..
T Consensus 25 ~t~~rvk--d~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~~~ELthn~Gtes~ 101 (170)
T KOG2944|consen 25 QTMLRVK--DPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNAKLELTHNWGTESP 101 (170)
T ss_pred hceeecc--cchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccCceeeecCCCCCCC
Confidence 4455566 9999999999999998865433322100 00 011111 112223445555443321
Q ss_pred --Cc-c-cccCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 91 --SA-A-AQTVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 91 --~~-~-~~~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
+. . ....+.++ ||||+|+|+++++.++++.|++....|.+.-- ...+++.||||+.|+|...
T Consensus 102 ~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~----K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 102 PDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM----KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc----cceeEEECCCCCeEEEeec
Confidence 11 0 12334355 99999999999999999999997776655311 2688999999999999865
No 86
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.01 E-value=1.1e-08 Score=70.62 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=63.5
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCCCCcccccCCccE-EEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSGDSAAAQTVGTGC-VLC 104 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~~~~~~~~~~~~~-~i~ 104 (165)
..|.|+ |+++|++||+++||+........+. . .+....+..++ ..|.|........+....+.++ ||+
T Consensus 3 v~i~V~--Dl~~a~~~~~~~lG~~~~~~~~~~~----~---~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia 73 (109)
T PF13669_consen 3 VGIVVP--DLDAAAAFYCDVLGFEPWERYRDEP----Q---GVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIA 73 (109)
T ss_dssp EEEEES---HHHHHHHHHHCTTHEEEEEEEEGC----T---TEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEE
T ss_pred EEEEcC--CHHHHHHHHHHhhCCcEEEEEecCC----C---CEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEE
Confidence 345566 9999999999999998765543321 1 24456667776 3666544332211112355665 999
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecC
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGEL 128 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p 128 (165)
|.|+|++++.+++.+.|.+++.++
T Consensus 74 ~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 74 FEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp EEESHHHHHHHHHHHTTECEEECE
T ss_pred EEeCCHHHHHHHHHHCCCEEcccC
Confidence 999999999999999999988764
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.82 E-value=3.5e-07 Score=75.63 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=67.5
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc----cccCCccE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA----AQTVGTGC 101 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~----~~~~~~~~ 101 (165)
..+.+.|+ |++++++||.+.|||+.......+ .+ ..+..++.|+..|++........+ ...++.++
T Consensus 4 ~hi~~~V~--D~~~a~~~y~~~LGf~~~~~~~~~----~~----~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv 73 (353)
T TIGR01263 4 DFVEFYVG--DAKQAAYYYFTRFGFEKVAKETGH----RE----KASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGV 73 (353)
T ss_pred EEEEEEeC--CHHHHHHHHHHhcCCcEEEEeecC----Cc----eeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCce
Confidence 34556666 999999999999999987652111 11 123445667888887654322111 12345555
Q ss_pred -EEEEEeCCHHHHHHHHHHCCCeEEecCccc
Q 031118 102 -VLCLETEDVEAAVAKAVSAGAVAEGELAEG 131 (165)
Q Consensus 102 -~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~ 131 (165)
+++|.|+|++++++++.++|++++.+|...
T Consensus 74 ~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~ 104 (353)
T TIGR01263 74 KDVAFRVDDAAAAFEAAVERGAEPVQAPVEL 104 (353)
T ss_pred EEEEEEECCHHHHHHHHHHCCCEeccCCccC
Confidence 899999999999999999999999887653
No 88
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.82 E-value=1.7e-07 Score=73.79 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=77.7
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCc-ccccCCccEEEEE
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSA-AAQTVGTGCVLCL 105 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~-~~~~~~~~~~i~~ 105 (165)
...|.|+ |++++..||++++|+++..+. ++ -..+..+++.|+.....++.+ ++......+|++|
T Consensus 13 ~v~L~vr--dL~~~~~FY~~ilGL~v~~~~-------~~------~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 13 AVTLNVR--DLDSMTSFYQEILGLQVLEET-------DG------SVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred EEEEEec--cHHHHHHHHHHhhCCeeeecc-------Cc------eEEEeeCCEEEEEEEeCCCCCCCCccccceeeeee
Confidence 3455566 999999999999999987653 11 345667887666545444433 2345566789999
Q ss_pred EeCCHHHH---HHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 106 ETEDVEAA---VAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 106 ~V~dv~~~---~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
-+.+...+ +.++...|..+. ...+... .--.||.||+||-||+....
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v----SEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLV-GASDHLV----SEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCccc-ccCcchh----heeeeecCCCCCeEEEEecC
Confidence 99975554 788888887766 3333322 25679999999999998753
No 89
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.80 E-value=1e-07 Score=66.00 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=75.5
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC-e-EEEEecCCCCCc--c---cccCCcc
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG-S-TFLVSDVSGDSA--A---AQTVGTG 100 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~-~-~l~l~d~~~~~~--~---~~~~~~~ 100 (165)
.+|.+.+.|++++.+||.++||++.....+ . +..+..-| . .+.+.......+ . ..-...+
T Consensus 6 FHLA~pV~Dl~~tr~FYgevlG~~~GRstd-------~------wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pH 72 (138)
T COG3565 6 FHLAIPVNDLDETRRFYGEVLGCKEGRSTD-------T------WVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPH 72 (138)
T ss_pred eEEeeeccccHHHHhhhhhhcccccccccc-------e------EEEeeecccEEEEEecCCcccccCcccCCCCCCCcc
Confidence 344444449999999999999998754321 1 33333323 2 222322211111 1 1112344
Q ss_pred EEEEEEeCCHHHHHHHHHHCCCeEEecCccccc-ccCCceEEEEEcCCCCeEEEEeee
Q 031118 101 CVLCLETEDVEAAVAKAVSAGAVAEGELAEGNG-ACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~-~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
+-+.|.++|..++.+++.++|.....+|...+- +-+-++-.++.||.||.+++-...
T Consensus 73 fGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 73 FGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred ceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 557888999999999999999988888877654 111348889999999999997654
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.4e-07 Score=73.14 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcc-------cccCCCCceEEEEEEEC----CeEEEEecCCC
Q 031118 21 ASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKR-------KAEQELPLISCAQLEIA----GSTFLVSDVSG 89 (165)
Q Consensus 21 ~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~-------~~~g~~~~v~~~~l~~g----~~~l~l~d~~~ 89 (165)
+.+++-..|+.++++|..+.++||+++||+++.+..+.+++ ..++ +-.-.++-.| ...|.|..+.+
T Consensus 12 ~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~---kwSktmvGyGpEdshFViELTYNYg 88 (299)
T KOG2943|consen 12 KADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDG---KWSKTMVGYGPEDSHFVIELTYNYG 88 (299)
T ss_pred hccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCccc---chhhhheecCCCcccEEEEEEeccC
Confidence 34566667777777899999999999999999877655530 0011 1111122222 22444554433
Q ss_pred CCcccccCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 90 DSAAAQTVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 90 ~~~~~~~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
-. ....++.+ +|.|.++|+-+..+++...|++ .. |...+.++||+|+.+.|..
T Consensus 89 V~--~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~---g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 89 VS--KYELGNDFGGITIASDDVFSKVEKVNAPGGK--------GS---GCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred cc--ceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------cc---ceEEEEEECCCCcEEEEec
Confidence 21 35677777 8999999988888888777763 12 5578899999999999997
No 91
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.69 E-value=2.6e-07 Score=70.25 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=66.1
Q ss_pred EEEEEEecC--CHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE--CCeEEEEecCCC--CCcc-----cc
Q 031118 27 KPQLLVEAP--KATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI--AGSTFLVSDVSG--DSAA-----AQ 95 (165)
Q Consensus 27 ~~~l~v~~~--D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~--g~~~l~l~d~~~--~~~~-----~~ 95 (165)
+.|+.+.|+ |++++++||+++|||+.......+. .. ..+....+.. ++..|.+..... .... ..
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~----~~-~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIED----PY-SGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCc----Cc-ccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHH
Confidence 456777777 9999999999999999876653221 00 0122223333 234565654332 1110 12
Q ss_pred cCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCccc
Q 031118 96 TVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEG 131 (165)
Q Consensus 96 ~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~ 131 (165)
..+.++ ||+|.|+|+++++++++++|++++.+|...
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y 115 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY 115 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence 234555 999999999999999999999999888654
No 92
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.59 E-value=3.4e-07 Score=62.71 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=66.8
Q ss_pred eeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CC---eEEEEec------CCCCCc-c
Q 031118 25 GMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AG---STFLVSD------VSGDSA-A 93 (165)
Q Consensus 25 ~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~---~~l~l~d------~~~~~~-~ 93 (165)
...+.|.|+ |+++|++||+++||++......... .. ......+.. .. ....... ...... .
T Consensus 3 l~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (138)
T COG0346 3 IHHVTLAVP--DLEASIDFYTDVLGLRLVKDTVNEA----DD--GGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDV 74 (138)
T ss_pred eEEEEEeeC--CHhHhHHHHHhhcCCeeeeeccccc----CC--ceEEEEEeccCCCCcccceeecccccccccccccce
Confidence 345556666 9999999999999999987642111 00 000111111 10 0111000 000000 0
Q ss_pred -cccC---CccEEEEEEeCC---HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 94 -AQTV---GTGCVLCLETED---VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 94 -~~~~---~~~~~i~~~V~d---v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.... ....++++.+++ ..+.+......|..+...+. ..+ + ..+||+||+|++|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~---~-~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 75 ALGVPGGDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG---G-VHVYFRDPDGILIELAT 138 (138)
T ss_pred EEeecCchhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc---c-eEEEEECCCCcEEEeeC
Confidence 0111 235689999998 55556666677877665544 444 4 39999999999999864
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=2.8e-06 Score=66.02 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEEC--CeEEEEecCCCCCcccccCCc-cEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIA--GSTFLVSDVSGDSAAAQTVGT-GCV 102 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g--~~~l~l~d~~~~~~~~~~~~~-~~~ 102 (165)
....|.|. |+++|+.||.++||+++.... ... .-+.|..+ .+.|.+...... .+...+. ...
T Consensus 151 ~~V~l~Vg--dL~ks~kyw~~~lgM~ileke-ek~----------t~~~mgYgd~q~~LElt~~~~~--id~~kg~gria 215 (299)
T KOG2943|consen 151 LQVMLNVG--DLQKSIKYWEKLLGMKILEKE-EKY----------TRARMGYGDEQCVLELTYNYDV--IDRAKGFGRIA 215 (299)
T ss_pred EEEEEEeh--hHHHHHHHHHHHhCcchhhhh-hhh----------hhhhhccCCcceEEEEEeccCc--ccccccceeEE
Confidence 45566666 999999999999999987531 110 01222222 356666544321 0123333 456
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccc-cCCceEEEEEcCCCCeEEEEeee
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGA-CCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~-~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|++-.+++..+-+.++..+++|+.++...... .-+..+..+.||||+.++|+...
T Consensus 216 faip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 216 FAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred EeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 78888888888888899999988876654321 11458889999999999998654
No 94
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.34 E-value=7.2e-06 Score=67.84 Aligned_cols=127 Identities=18% Similarity=0.150 Sum_probs=77.7
Q ss_pred eEEEEEEecC--CHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCeEEEEecCC-CC-Ccc-----cc
Q 031118 26 MKPQLLVEAP--KATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGSTFLVSDVS-GD-SAA-----AQ 95 (165)
Q Consensus 26 ~~~~l~v~~~--D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~~l~l~d~~-~~-~~~-----~~ 95 (165)
-+.|+.+.+. |+++++.||+++|||+.....+.+. ........+...- ++..|.+.... .. ... ..
T Consensus 158 ~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~----~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 158 AIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKT----EYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred EeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEecc----CCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 3678888887 9999999999999999876643221 1111111222211 33556665421 11 010 12
Q ss_pred cCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCce----------------EEEEEcCCCCeEEEEeee
Q 031118 96 TVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGER----------------VGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 96 ~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~----------------~~~~~DP~G~~~~l~~~~ 157 (165)
..+.++ ||+|.|+|+++++++++++|+.++.+|......- ..| .-+=+|.+|.++++++..
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l-~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~ 311 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLL-GERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKP 311 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHH-HHHhcccccchHHHHHHCCEEEecCCCceEEEEeccC
Confidence 234555 8999999999999999999999998774321100 001 123367788888887654
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.00 E-value=0.00039 Score=58.48 Aligned_cols=123 Identities=16% Similarity=0.082 Sum_probs=78.6
Q ss_pred EEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCC-CC--C---------------
Q 031118 30 LLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS-GD--S--------------- 91 (165)
Q Consensus 30 l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~-~~--~--------------- 91 (165)
|.+-++|+.++..||+..|||+.+.... ++ ++... .....++.|++.+.+.... +. .
T Consensus 4 vef~v~da~~~~~~f~~~~GF~~~a~~~-~~---tg~~~-~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 4 VEFWCGDATNTARRFSWGLGMPLVAKSD-LT---TGNTT-YASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred EEEEcCCHHHHHHHHHHhcCCCeEeecC-CC---CCCcc-eEEEEEEeCCEEEEEeCCCCCccccccccccccccccccC
Confidence 3444449999999999999998876532 21 12111 1112235566777775542 20 0
Q ss_pred -c----ccccCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccc-cCC-ceEEEEEcCCCCeEEEEeee
Q 031118 92 -A----AAQTVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGA-CCG-ERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 92 -~----~~~~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~-~~G-~~~~~~~DP~G~~~~l~~~~ 157 (165)
. ....+|.++ -++|.|+|++++++++++.|++.+.+|...... ++| ..+.-++-+.|.++.|+...
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 0 012456666 799999999999999999999999887754220 012 25556777777777777643
No 96
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.00 E-value=2.4e-05 Score=63.11 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=83.1
Q ss_pred cCCCCCCCCCCCCCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEE--EECCeEEEEec
Q 031118 9 NGAAPEKAPATAASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQL--EIAGSTFLVSD 86 (165)
Q Consensus 9 ~~~~~~~~~~~~~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l--~~g~~~l~l~d 86 (165)
.|+.|++.+.. ..-+|.+-|+|...+..||+..|||++....... .+. -.+++. +.|.+.+.+..
T Consensus 6 k~~k~~~g~~l------~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~le----tg~---~~~~s~alr~g~~vFv~~s 72 (381)
T KOG0638|consen 6 KGAKPEAGKFL------RFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLE----TGS---REWASHALRQGKIVFVFNS 72 (381)
T ss_pred CCCCcccccee------eeeEEEEEecCcHHHHHHHHhhcCCcchhccccc----ccc---hHHHHHHhhcCCEEEEEec
Confidence 46666664332 2344555555999999999999999986543211 111 012222 33445544433
Q ss_pred CC-CC---Cc-ccccCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 87 VS-GD---SA-AAQTVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 87 ~~-~~---~~-~~~~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.. |+ ++ ....++.++ .+||+|+|.+.+.+.+.++|+++..+|.....+-+-.+++.++.+--....+.+
T Consensus 73 ~~~p~~~~~G~~l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvE 147 (381)
T KOG0638|consen 73 AYNPDNSEYGDHLVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVE 147 (381)
T ss_pred CCCCCchhhhhhhhhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhh
Confidence 32 22 12 134566666 799999999999999999999999988765431112477777777655555444
No 97
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.81 E-value=0.0011 Score=46.55 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=59.5
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcc-cc-cCCccEEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAA-AQ-TVGTGCVL 103 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~-~~-~~~~~~~i 103 (165)
++|.|.|. |-+.-++||++.|||++.... +. .+.+.. +.+...+.+.+ .|.... .. ..-....+
T Consensus 2 ~~PvlRVn--nR~~ni~FY~~~LGfkll~EE--------na--~a~lg~-~~~~erlvlEE-SP~~rtr~V~G~KKl~~i 67 (125)
T PF14506_consen 2 IIPVLRVN--NRDLNIDFYQKTLGFKLLSEE--------NA--LAILGD-QQKEERLVLEE-SPSMRTRAVEGPKKLNRI 67 (125)
T ss_dssp EEEEEEES--SHHHHHHHHTTTT--EEEEEE--------TT--EEEEE--TT--EEEEEEE---TTT-B--SSS-SEEEE
T ss_pred cCceEEEc--CHHHhHHHHHhccCcEEeecc--------cc--EEEecC-CCCceEEEEec-CCccccccccCcceeeEE
Confidence 57899999 999999999999999998652 21 112222 21223555543 343221 11 22234478
Q ss_pred EEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 104 CLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 104 ~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
.+.|.+..+ ++.+++.|.++..--+ .. ..+-+-..+|.|.+|.|....
T Consensus 68 vIkv~~~~E-Ie~LLar~~~~~~l~k-g~----~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 68 VIKVPNPKE-IEALLARGAQYDRLYK-GK----NGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp EEEESSHHH-HHHHHHC-S--SEEEE--S----SSEEEEEE-TT--EEEEE--S
T ss_pred EEEcCCHHH-HHHHHhcccccceeEE-cC----CceEEEEECCCCCEEEEEEcC
Confidence 999998665 4667777766332211 11 236667789999999998653
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.81 E-value=0.00035 Score=58.77 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=68.5
Q ss_pred CCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECC--eEEEEecCCC----CCc--
Q 031118 21 ASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAG--STFLVSDVSG----DSA-- 92 (165)
Q Consensus 21 ~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~--~~l~l~d~~~----~~~-- 92 (165)
.+|+ .+.||.+.++|+++++.||+++|||+..+..+.++. ......+.-..+...+ ..|-|..... ...
T Consensus 176 ~gl~-~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i--~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~ 252 (398)
T PLN02875 176 YGLR-RLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDV--GTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQ 252 (398)
T ss_pred CCcc-eeCcceechhhHHHHHHHHHHhcCCeeeeeeccccc--cccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHH
Confidence 4565 678888888899999999999999988765433210 0000012223334433 4565655421 111
Q ss_pred --ccccCCccE-EEEEEeCCHHHHHHHHHHC----CCeEEecC
Q 031118 93 --AAQTVGTGC-VLCLETEDVEAAVAKAVSA----GAVAEGEL 128 (165)
Q Consensus 93 --~~~~~~~~~-~i~~~V~dv~~~~~~~~~~----G~~i~~~p 128 (165)
.....|.++ ||+|.|+|+.++.++++++ |...+..|
T Consensus 253 eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 253 TYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 123345666 9999999999999999998 99988755
No 99
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.47 E-value=0.0019 Score=46.75 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred EEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCc--ccccCCccE-EEEE
Q 031118 29 QLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSA--AAQTVGTGC-VLCL 105 (165)
Q Consensus 29 ~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~--~~~~~~~~~-~i~~ 105 (165)
+|-+.++|..++..|+ +.|||+.+.+- . .. .+ .-++-|++.|.+........ ....+|.++ -|.|
T Consensus 12 FvEFa~~~~~~l~~~~-~~lGF~~~a~h--r----sk---~v--~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 12 FVEFAVPDAQALAQLF-TALGFQPVARH--R----SK---DV--TLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEE-SSTTSCHHHH-CCCCEEEECCE--C----CC---SE--EEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred EEEEecCCHHHHHHHH-HHhCcceEEec--C----Cc---ce--EEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 4445555866666666 57999987542 1 11 12 23355888888865432111 124566776 7999
Q ss_pred EeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 106 ETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 106 ~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
.|+|.+.+++++++.|++...+|... . ....--++-+.|.++-|+....
T Consensus 80 rV~Da~~A~~rA~~~GA~~~~~~~~~-~---e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 80 RVDDAAAAYERAVALGAEPVQEPTGP-G---ELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EES-HHHHHHHHHHTT--EEEEEEET-T----BEEEEEE-CCC-EEEEEE--S
T ss_pred EeCCHHHHHHHHHHcCCcCcccCCCC-C---cEeeeeEEccCCCEEEEEecCC
Confidence 99999999999999999988776332 2 3366688888888888887654
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.99 E-value=0.0021 Score=52.78 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=64.7
Q ss_pred eEEEEEEe--cCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEE-EEE-CC-eEEEEecCCCCCc-----ccc
Q 031118 26 MKPQLLVE--APKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQ-LEI-AG-STFLVSDVSGDSA-----AAQ 95 (165)
Q Consensus 26 ~~~~l~v~--~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~-l~~-g~-~~l~l~d~~~~~~-----~~~ 95 (165)
.+.||+.. ...++.+..||+++|+|+.....+.+. .. ..++++ |.. +| ..|-|.....+.. ...
T Consensus 167 ~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~----p~--tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 167 AIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPG----PI--TGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred eechhhhhcchhhHHHHHHHHHHHhCccceeeEeccC----Cc--ccEEEeeEecCCCcEEeecccCCCchhHHHHHHHH
Confidence 44454443 359999999999999999876665442 10 123333 222 23 2444433332211 134
Q ss_pred cCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcc
Q 031118 96 TVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAE 130 (165)
Q Consensus 96 ~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~ 130 (165)
..|.++ ||+|.++|+-++.++++++|.+.+..|..
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 566666 99999999999999999999999987765
No 101
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=96.48 E-value=0.062 Score=42.74 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 031118 20 AASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGR 55 (165)
Q Consensus 20 ~~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~ 55 (165)
|.+..-=..+|.|. |+++|.+||+++|||+...+
T Consensus 164 p~~t~IGHvHL~v~--~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 164 PAGTIIGHVHLKVA--DLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred CCCcEEeEEEEEeC--CHHHHHHHHHHhcCCeeeec
Confidence 44444455666666 99999999999999998766
No 102
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=96.35 E-value=0.045 Score=40.56 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=45.8
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCC-----cc-----cccC
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDS-----AA-----AQTV 97 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~-----~~-----~~~~ 97 (165)
.||.+-+.|++++.++|++.|||.+......+. -| .....+.+++..|.+....+.. +. ....
T Consensus 2 DH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~---~G----T~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 2 DHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPG---WG----TANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEE-TTGGG----GGGS--S--EEEEE-TT---T-----EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CEEEEEcCCHHHHHHhhhhcceEeecCCCcCCC---Cc----cEEEEEeeCCceEEEEEeCCcccccccccceechhhcC
Confidence 355555559999999998899999987654442 11 2234445677677665433211 10 0123
Q ss_pred CccE-EEEEEeCCHHHHHHHHHHCCCe
Q 031118 98 GTGC-VLCLETEDVEAAVAKAVSAGAV 123 (165)
Q Consensus 98 ~~~~-~i~~~V~dv~~~~~~~~~~G~~ 123 (165)
+.++ .+||.++|+++..+++.+.|..
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 4555 8999999999999999999965
No 103
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.31 E-value=0.082 Score=35.89 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=43.8
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecCcccccccCCceEEEEEcCCC-CeEEEEeeeccc
Q 031118 102 VLCLETEDVEAAVAKAVS-AGAVAEGELAEGNGACCGERVGKVKDPYG-FTWLICSPVKKC 160 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~-~G~~i~~~p~~~~~~~~G~~~~~~~DP~G-~~~~l~~~~~~~ 160 (165)
|+.|.|.|++++.+...+ .|............ +.+..++..++| ..++|+++..+.
T Consensus 2 Hv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~---~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 2 HVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQ---GVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCT---TEEEEEEEETTETEEEEEEEESSTT
T ss_pred EEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCC---CEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 799999999999998887 88776654444444 668889999998 689999987654
No 104
>PF15067 FAM124: FAM124 family
Probab=93.72 E-value=1 Score=35.28 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE---CCeEEEEe--cCCCCCcccccCCccEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI---AGSTFLVS--DVSGDSAAAQTVGTGCV 102 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~---g~~~l~l~--d~~~~~~~~~~~~~~~~ 102 (165)
..|.++-+|.+.+++||+-+|+-+..... ++ +..+.+ -+..|+++ ...+.. .........
T Consensus 132 ftly~~~~N~~d~vr~Yelil~~~~~~~k-------~~------FC~F~lys~~~~~iQlsLK~lp~~~--~p~p~esav 196 (236)
T PF15067_consen 132 FTLYCSFDNYEDMVRFYELILQREPTQQK-------ED------FCFFTLYSQPGLDIQLSLKQLPPGM--SPEPTESAV 196 (236)
T ss_pred EEEEecCCCHHHHHHHHHHHhccCcceee-------CC------cEEEEEecCCCeEEEEEeccCCCCC--CcccccceE
Confidence 33444434999999999999998875442 12 333332 23455543 222221 233445667
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEE
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLI 153 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l 153 (165)
+.|.|.|+-++.-- +-+.+. +..+.-| ..+|||||.|-|
T Consensus 197 LqF~V~~igqLvpL-LPnpc~---PIS~~rW--------qT~D~DGNkILL 235 (236)
T PF15067_consen 197 LQFRVEDIGQLVPL-LPNPCS---PISETRW--------QTEDYDGNKILL 235 (236)
T ss_pred EEEEecchhhhccc-CCCCcc---cccCCcc--------eeeCCCCCEecc
Confidence 99999998876542 222222 2222223 489999999854
No 105
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=93.43 E-value=1.8 Score=35.99 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred EEEEEecCCHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCc--ccccCCccE-EEE
Q 031118 28 PQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSA--AAQTVGTGC-VLC 104 (165)
Q Consensus 28 ~~l~v~~~D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~--~~~~~~~~~-~i~ 104 (165)
-+|-+.++|.+.++.=|-..|||.....- . . + .....+-|+..|.+......+. ....++.+. .+.
T Consensus 24 eFvEf~~~d~~~~l~~l~~~lGF~~~~~H--r----s----k-~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~a~a 92 (363)
T COG3185 24 EFVEFAVPDPQEALGALLGQLGFTAVAKH--R----S----K-AVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSACAMA 92 (363)
T ss_pred eEEEEecCCHHHHHHHHHHHhCccccccc--c----c----c-ceeEEEeCCEEEEEcCCCcchhhHHHHhcCCchheeE
Confidence 34555555995555555557999875431 1 0 1 1223344777777755432211 123455554 799
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCcc-----ccc-ccCCceEEEEEcCC
Q 031118 105 LETEDVEAAVAKAVSAGAVAEGELAE-----GNG-ACCGERVGKVKDPY 147 (165)
Q Consensus 105 ~~V~dv~~~~~~~~~~G~~i~~~p~~-----~~~-~~~G~~~~~~~DP~ 147 (165)
|.|+|.+.+++++++.|++....+.. .|- ..-|....|+-|.+
T Consensus 93 ~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 93 FRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred EeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 99999999999999999965544331 110 00144777888888
No 106
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=90.45 E-value=0.3 Score=39.99 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred eeEEEEEEecC--CHHHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEE-CCeEEE-EecCCCCC-c-------
Q 031118 25 GMKPQLLVEAP--KATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEI-AGSTFL-VSDVSGDS-A------- 92 (165)
Q Consensus 25 ~~~~~l~v~~~--D~~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~-g~~~l~-l~d~~~~~-~------- 92 (165)
+++.|+.-.++ .++.+++||.+.|||..-+..+.+....+ .+. +-...+.. .+...| +.+..+.. .
T Consensus 177 ~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te-~Sa-Lrs~vlan~~esi~mpinEp~~G~k~ksQIqey 254 (381)
T KOG0638|consen 177 NRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTE-YSA-LRSIVLANYEESIKMPINEPAPGKKKKSQIQEY 254 (381)
T ss_pred eehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhH-HHH-HHHHHHhcCCccEEEeccCCCCCCccHHHHHHH
Confidence 35566666555 78899999999999977655433220000 000 00000111 222333 33333321 1
Q ss_pred ccccCCccE-EEEEEeCCHHHHHHHHHHCCCeEEecCcccccc-----c-------C------CceEEEEEcCCCCeEEE
Q 031118 93 AAQTVGTGC-VLCLETEDVEAAVAKAVSAGAVAEGELAEGNGA-----C-------C------GERVGKVKDPYGFTWLI 153 (165)
Q Consensus 93 ~~~~~~~~~-~i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~-----~-------~------G~~~~~~~DP~G~~~~l 153 (165)
.....|.++ ||+|.++|+=++.+.++++|+..+.+|...... + + -.....=.|-.|++++|
T Consensus 255 v~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQI 334 (381)
T KOG0638|consen 255 VEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQI 334 (381)
T ss_pred HHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeee
Confidence 023445565 999999999999999999999999877542110 0 0 00122336788999999
Q ss_pred Eeee
Q 031118 154 CSPV 157 (165)
Q Consensus 154 ~~~~ 157 (165)
++..
T Consensus 335 FTKp 338 (381)
T KOG0638|consen 335 FTKP 338 (381)
T ss_pred eccc
Confidence 8643
No 107
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=79.62 E-value=16 Score=25.22 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=35.7
Q ss_pred EEEEEEeCCHHHHHHHHHHCCCeEEecCcc-ccc-------ccCCceEEEEEcCCC-CeEEEEeee
Q 031118 101 CVLCLETEDVEAAVAKAVSAGAVAEGELAE-GNG-------ACCGERVGKVKDPYG-FTWLICSPV 157 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~~G~~i~~~p~~-~~~-------~~~G~~~~~~~DP~G-~~~~l~~~~ 157 (165)
-|++|.|.|++++.+-..+.|.++...... ..| .+.+.+..++..|+| ..++|.++.
T Consensus 5 ~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 5 DNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 389999999999865555578876644321 111 001235667777765 578888754
No 108
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=78.68 E-value=7.7 Score=24.98 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 109 DVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 109 dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
+.+++.+++.+.|.++. ....... |...+..+|.+|+.+++.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~-~ve~~~~---g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVR-EVEFDDD---GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceE-EEEEcCC---CEEEEEEEECCCCEEEEEEcC
Confidence 78888999999998544 4333223 557888999999999997543
No 109
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=76.69 E-value=22 Score=25.66 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=35.9
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEEecCcc-----c------------ccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 101 CVLCLETEDVEAAVAKAVS-AGAVAEGELAE-----G------------NGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~-~G~~i~~~p~~-----~------------~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
-|+.|.|.|++++..--.+ .|.+++.++.. . .+ .+.+.+++..+.|..++|++...
T Consensus 6 ~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 6 SHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGW--GSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCc--ceeeEEEEecCCCCcEEEEeccC
Confidence 3899999999999554433 67776543211 0 11 01345677767788899998763
No 110
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=72.33 E-value=6.9 Score=19.14 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.0
Q ss_pred CceEEEEEcCCCCeEE
Q 031118 137 GERVGKVKDPYGFTWL 152 (165)
Q Consensus 137 G~~~~~~~DP~G~~~~ 152 (165)
..-...++|++|++|-
T Consensus 5 n~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWI 20 (24)
T ss_dssp SCEEEEEE-TTSCEEE
T ss_pred CeEEEEEEcCCcCEEE
Confidence 3467789999999995
No 111
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=71.18 E-value=27 Score=23.13 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=31.7
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 102 VLCLETEDVEAAVAKAVS-AGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~-~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+.|.|.|++++.+-..+ .|.+........++ ++.+..+++. .|..++|.++.
T Consensus 3 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 3 HIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPE--QGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred EEEEEeCCHHHHHHHHHHhhCCCCccccccCcc--cccEEEEEEc-CCEEEEEEEEC
Confidence 789999999998554443 56665433222111 0334556654 67778887654
No 112
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=70.84 E-value=23 Score=22.20 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=35.2
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeec
Q 031118 102 VLCLETEDVEAAVAKAVS-AGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~-~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
|+.|.|.|+++..+-..+ .|.++...... . ..++.++.+. +..+.|.....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~---~~~~~~~~~~-~~~i~l~~~~~ 52 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--G---GAEFAVLGLG-GTRLELFEGDE 52 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--C---CEEEEEEecC-CceEEEecCCC
Confidence 678899999999766665 78887766532 1 3356667665 67788777553
No 113
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=62.92 E-value=41 Score=22.09 Aligned_cols=53 Identities=11% Similarity=-0.073 Sum_probs=31.9
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEEecCcccccccCCceEEEEEcCC---CCeEEEEee
Q 031118 101 CVLCLETEDVEAAVAKAVS-AGAVAEGELAEGNGACCGERVGKVKDPY---GFTWLICSP 156 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~-~G~~i~~~p~~~~~~~~G~~~~~~~DP~---G~~~~l~~~ 156 (165)
.|+.|.|.|++++.+-..+ .|.++...+..... +...+++..+. +..+++...
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG---KFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC---ceEEEEecCCCCCCccEEEEEec
Confidence 3899999999998665554 48776654322211 22344555544 466776643
No 114
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=61.30 E-value=43 Score=21.88 Aligned_cols=53 Identities=15% Similarity=0.000 Sum_probs=30.8
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEee
Q 031118 101 CVLCLETEDVEAAVAKAV-SAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSP 156 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~-~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~ 156 (165)
-|+.|.|.|++++..-.. ..|..+......... +.....+..+.+..++|...
T Consensus 5 ~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~i~l~~~ 58 (125)
T cd08352 5 HHVAIICSDYEKSKEFYVEILGFKVIREVYRPER---GSYKLDLLLNGGYQLELFSF 58 (125)
T ss_pred ceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC---CcEEEEEecCCCcEEEEEEc
Confidence 389999999999965554 367776543211111 11223344456667776643
No 115
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=59.03 E-value=4.6 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=23.0
Q ss_pred ccEEEEEEeC-CHH--HHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEE
Q 031118 99 TGCVLCLETE-DVE--AAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLI 153 (165)
Q Consensus 99 ~~~~i~~~V~-dv~--~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l 153 (165)
.--.+-|.|+ |.+ ++..++.+ ..+.-+. ..++..+.||.|.-|-+
T Consensus 53 DLe~Lkf~V~~~~Dl~~L~~~le~--~~~fidK--------k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 53 DLEMLKFQVPKDFDLAALKSHLEE--QEFFIDK--------KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp SEEEEEEEES-S--HHHHHHHTTT--S-EE--T--------T-SEEEEE-TTS-EEEE
T ss_pred eeEEEEEEecCcccHHHHHHHhcc--cceEecC--------CceEEEEECCcceEEEe
Confidence 3346788888 544 43444333 2222222 34788999999988765
No 116
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=58.23 E-value=15 Score=26.83 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=27.5
Q ss_pred EEEEEeCCHHHHHHHH-HHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeee
Q 031118 102 VLCLETEDVEAAVAKA-VSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~-~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~ 157 (165)
|+.+.|+|++++.+++ ...|.++...-.-..+ |.....+.=++| -|||....
T Consensus 3 H~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~---GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 3 HLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGW---GTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEE-TTGGG----GGGS--S--EEEEE-TTT----EEEEEEE-SSS-EEEEEEES
T ss_pred EEEEEcCCHHHHHHhhhhcceEeecCCCcCCCC---ccEEEEEeeCCc-eEEEEEeC
Confidence 8999999999999988 7778887754333344 553333322667 99998853
No 117
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.38 E-value=40 Score=19.72 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.6
Q ss_pred ccEEEEEEeCCHHHHHHHHHHCCCeE
Q 031118 99 TGCVLCLETEDVEAAVAKAVSAGAVA 124 (165)
Q Consensus 99 ~~~~i~~~V~dv~~~~~~~~~~G~~i 124 (165)
+...+.|.+++.+.+.+.+.++|-++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44578999999998899999998765
No 118
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=50.24 E-value=16 Score=28.54 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=30.4
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 103 LCLETEDVEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 103 i~~~V~dv~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.+|.-.|.+..++ ++ .|..+..-+... +...+.++||+||..++|-
T Consensus 182 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 227 (228)
T PRK06704 182 TSIREERPELLTK-LL-PTIDFTKLPSKQ-----PVLLFNVKQPSSYSCMLCV 227 (228)
T ss_pred HHHHhcCHHHHHH-Hh-ccceeeeccccc-----ceEEEEeeCCCccchhhcc
Confidence 3445556666666 33 566666555443 4478899999999998863
No 119
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.30 E-value=73 Score=20.84 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=27.3
Q ss_pred EEEEEEeCCHHHH---HHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEe
Q 031118 101 CVLCLETEDVEAA---VAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICS 155 (165)
Q Consensus 101 ~~i~~~V~dv~~~---~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~ 155 (165)
.|++|.|.|++++ |.+++ |.++...-..... +....|+.-..|..++|++
T Consensus 3 ~Hi~l~v~dl~~s~~FY~~~l--g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 55 (125)
T cd07241 3 EHVAIWTKDLERMKAFYVTYF--GATSNEKYHNPRK---GFESYFLSFDDGARLELMT 55 (125)
T ss_pred eEEEEEecCHHHHHHHHHHHh--CCEeeceEeCCCC---CceEEEEecCCCcEEEEEc
Confidence 3899999999998 44444 5544321111111 2233344333567778775
No 120
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=48.28 E-value=18 Score=19.16 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHhhCC
Q 031118 35 PKATDAVQFYKTAFGA 50 (165)
Q Consensus 35 ~D~~~a~~FY~~vlG~ 50 (165)
+|.++|+.+|++.|.+
T Consensus 13 g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 13 GDYEKAIEYYEQALAL 28 (36)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4999999999997743
No 121
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=20 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhhCCEEEEE
Q 031118 36 KATDAVQFYKTAFGAVEIGR 55 (165)
Q Consensus 36 D~~~a~~FY~~vlG~~~~~~ 55 (165)
|+.+++.||.+.||+++...
T Consensus 146 ~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred ccHHHHHHHHHhcCceeeec
Confidence 78899999999999998643
No 122
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=43.16 E-value=1e+02 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=34.3
Q ss_pred EEEEEeC--CHHHHHHHHH-HCCCeEEecCc-ccccccCCceEEEEEcCCC-CeEEEEeeec
Q 031118 102 VLCLETE--DVEAAVAKAV-SAGAVAEGELA-EGNGACCGERVGKVKDPYG-FTWLICSPVK 158 (165)
Q Consensus 102 ~i~~~V~--dv~~~~~~~~-~~G~~i~~~p~-~~~~~~~G~~~~~~~DP~G-~~~~l~~~~~ 158 (165)
|+++.|. |++++..... ..|-+...... ..+. .+.+...+..|.| ..++|.++..
T Consensus 6 Hv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~--~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 6 HVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPY--SGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred EEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCc--ccEEEEEEECCCCcEEEEEecCCC
Confidence 8999999 9999854433 35665543321 1112 1557778888865 5678887654
No 123
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=42.90 E-value=70 Score=20.56 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=19.4
Q ss_pred eEEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 031118 26 MKPQLLVEAPKATDAVQFYKTAFGAVEIGR 55 (165)
Q Consensus 26 ~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~ 55 (165)
..+++.+.. +=..|..+|++ |||+....
T Consensus 55 ~~~~l~v~~-~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 55 KTPFLYVDA-DNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp SEEEEEEET-T-HHHHHHHHH-CT-EEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHH-cCCEEEEE
Confidence 456677764 67789999996 99987643
No 124
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.18 E-value=78 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.8
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEEe
Q 031118 102 VLCLETEDVEAAVAKAVSAGAVAEG 126 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~~G~~i~~ 126 (165)
.|.+.+++.+++.+.+.++|.++.-
T Consensus 46 ~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 46 VFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEecCCHHHHHHHHHHCCCeeeC
Confidence 4444555888889999999988764
No 125
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=36.98 E-value=55 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCeEEEEeeeccc
Q 031118 139 RVGKVKDPYGFTWLICSPVKKC 160 (165)
Q Consensus 139 ~~~~~~DP~G~~~~l~~~~~~~ 160 (165)
...+.+|.|||.+..+....+.
T Consensus 48 ~~~~~~D~fGN~v~~~~~~~ph 69 (82)
T PF08379_consen 48 RVREYTDFFGNRVHRFSFPEPH 69 (82)
T ss_pred EEEEEECCCCCEEEEEEECCCc
Confidence 6778999999999998866554
No 126
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=36.63 E-value=57 Score=19.94 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=10.3
Q ss_pred CceEEEEEcCC-CCeEEE
Q 031118 137 GERVGKVKDPY-GFTWLI 153 (165)
Q Consensus 137 G~~~~~~~DP~-G~~~~l 153 (165)
|..++.|+||+ |..+.-
T Consensus 36 GV~igLFk~P~tGk~fR~ 53 (60)
T PF11520_consen 36 GVKIGLFKDPETGKYFRK 53 (60)
T ss_dssp -EEEEEEE-TTT--EEEE
T ss_pred ceEEEEEeCCCCCcchhh
Confidence 66888999999 887653
No 127
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=35.54 E-value=79 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=19.8
Q ss_pred EEEEEEecCCHHHHHHHHHHhhCCEEEEEe
Q 031118 27 KPQLLVEAPKATDAVQFYKTAFGAVEIGRS 56 (165)
Q Consensus 27 ~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~ 56 (165)
...|.|...|. .|+.||++ +||+.....
T Consensus 128 ~~~L~V~~~N~-~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 128 KIVLEVRESNE-AAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred eEEEEEecCCh-HHHHHHHH-cCCEEEeee
Confidence 34445554244 99999997 999987664
No 128
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=33.05 E-value=2.1e+02 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=21.0
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEEecC
Q 031118 101 CVLCLETEDVEAAVAKAV-SAGAVAEGEL 128 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~-~~G~~i~~~p 128 (165)
.|++|.|.|+++.+.--. ..|.+++...
T Consensus 29 ~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 29 QQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred EEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 399999999999955443 4588876664
No 129
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.89 E-value=1.4e+02 Score=19.87 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCEEEEEeecCcccccCCCCceEEEEEEECCeEEEEecCCCCCcccccCCccEEEEEEeCCHHHHHHHH
Q 031118 38 TDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSGDSAAAQTVGTGCVLCLETEDVEAAVAKA 117 (165)
Q Consensus 38 ~~a~~FY~~vlG~~~~~~~~~~~~~~~g~~~~v~~~~l~~g~~~l~l~d~~~~~~~~~~~~~~~~i~~~V~dv~~~~~~~ 117 (165)
+.|+.||.+-|+.+. |+ .+. -..+.||+ .+.-.++++.+.++-..++-.+-
T Consensus 7 d~A~~wfk~E~~l~~------------g~--~vr-ffvRyGG~--------------~~~~~GFS~gv~~e~PkE~g~~q 57 (95)
T COG4841 7 DQALKWFKEELDLEE------------GN--KVR-FFVRYGGC--------------SSLQQGFSLGVAKEVPKEIGYKQ 57 (95)
T ss_pred HHHHHHHHHhcCCCC------------CC--EEE-EEEEEcCc--------------ccccCCcceeeeccCchhhchhe
Confidence 578999999888742 21 111 22244554 12235677888888777764454
Q ss_pred HHCCCeEEecCccc
Q 031118 118 VSAGAVAEGELAEG 131 (165)
Q Consensus 118 ~~~G~~i~~~p~~~ 131 (165)
...|.++..+-.+.
T Consensus 58 ~~Dgltffiee~Dl 71 (95)
T COG4841 58 EYDGLTFFIEEKDL 71 (95)
T ss_pred eecCeEEEEecCce
Confidence 56677766554443
No 130
>PRK11478 putative lyase; Provisional
Probab=32.89 E-value=1.5e+02 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=18.4
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEEe
Q 031118 101 CVLCLETEDVEAAVAKAV-SAGAVAEG 126 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~-~~G~~i~~ 126 (165)
-|+.|.|.|++++.+-.. ..|.++..
T Consensus 8 ~hv~l~v~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 8 HHIAIIATDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCEecc
Confidence 489999999999854443 34766653
No 131
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=32.08 E-value=1.7e+02 Score=20.01 Aligned_cols=26 Identities=4% Similarity=-0.116 Sum_probs=20.2
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEec
Q 031118 102 VLCLETEDVEAAVAKAVS-AGAVAEGE 127 (165)
Q Consensus 102 ~i~~~V~dv~~~~~~~~~-~G~~i~~~ 127 (165)
|+.|.|.|++++.+-..+ .|.++...
T Consensus 3 Hi~i~V~D~e~s~~FY~~vLGf~~~~~ 29 (136)
T cd08342 3 HVEFYVGNAKQLASWFSTKLGFEPVAY 29 (136)
T ss_pred EEEEEeCCHHHHHHHHHHhcCCeEEEe
Confidence 789999999999655555 78877654
No 132
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=31.39 E-value=91 Score=16.72 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=12.0
Q ss_pred CceEEEEEcCCCCeEEEEeeec
Q 031118 137 GERVGKVKDPYGFTWLICSPVK 158 (165)
Q Consensus 137 G~~~~~~~DP~G~~~~l~~~~~ 158 (165)
|....|-.|..|+++....+..
T Consensus 15 G~~~~~~YD~~Grl~~~tdp~g 36 (42)
T TIGR01643 15 GTTTRYTYDAAGRLVEITDADG 36 (42)
T ss_pred CCEEEEEECCCCCEEEEECCCC
Confidence 4455555566666665555443
No 133
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=57 Score=26.59 Aligned_cols=59 Identities=7% Similarity=0.062 Sum_probs=38.4
Q ss_pred EEEEEEeCC-HHHHHHHHHHCCCeEEecCcccccccCCceEEEEEcCCCCeEEEEeeecccCCC
Q 031118 101 CVLCLETED-VEAAVAKAVSAGAVAEGELAEGNGACCGERVGKVKDPYGFTWLICSPVKKCAGV 163 (165)
Q Consensus 101 ~~i~~~V~d-v~~~~~~~~~~G~~i~~~p~~~~~~~~G~~~~~~~DP~G~~~~l~~~~~~~~~~ 163 (165)
+-|+.+|+| +....+-+.+....+.--|+.... + +...++.++|+.++|..+...+-++
T Consensus 159 ~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~---a-k~~~fqn~~~y~VefLTtnr~sdd~ 218 (349)
T COG5397 159 YAISREVDDSLPPILDLLRSVDPSFRPVPHRSDP---A-KSSAFQNRDGYRVEFLTTNRGSDDY 218 (349)
T ss_pred hhhhHHhcccccHHHHHHhccCcccccCCccCCC---c-cceeeecCCCeEEEEeccCcCCccc
Confidence 356667765 455455555556666655655544 5 4445599999999999977665554
No 134
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=30.84 E-value=54 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=19.0
Q ss_pred CcceeEEEEEEecCCHHHHHHHHHHhhCCEEE
Q 031118 22 SFTGMKPQLLVEAPKATDAVQFYKTAFGAVEI 53 (165)
Q Consensus 22 ~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~ 53 (165)
|+.++...+... | ..|.+||++ +||+..
T Consensus 156 g~~~I~l~v~~~--N-~~A~~~Y~k-lGF~~~ 183 (191)
T TIGR02382 156 GLTRLRVATQMG--N-TAALRLYIR-SGANIE 183 (191)
T ss_pred CCCEEEEEeCCC--C-HHHHHHHHH-cCCccc
Confidence 455555554433 5 699999995 999764
No 135
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=29.79 E-value=65 Score=22.84 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.3
Q ss_pred ccEEEEEEeCCHHHHHHHHHHCCCeEEec
Q 031118 99 TGCVLCLETEDVEAAVAKAVSAGAVAEGE 127 (165)
Q Consensus 99 ~~~~i~~~V~dv~~~~~~~~~~G~~i~~~ 127 (165)
.-..+.+.|+|+|++...+.++|...+.+
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 44568899999999999999999887743
No 136
>PF13351 DUF4099: Protein of unknown function (DUF4099)
Probab=27.95 E-value=1.2e+02 Score=19.66 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCeEEEEeeecccCCCC
Q 031118 139 RVGKVKDPYGFTWLICSPVKKCAGVE 164 (165)
Q Consensus 139 ~~~~~~DP~G~~~~l~~~~~~~~~~~ 164 (165)
|...++|+||++.-.+.+.+..+.++
T Consensus 56 rlsl~~~~dG~v~l~i~~ir~ep~le 81 (85)
T PF13351_consen 56 RLSLVRDEDGNVDLMIHPIRKEPELE 81 (85)
T ss_pred EEEEEECCCCCEEEEEeeeecccccC
Confidence 78899999999999999998888776
No 137
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=27.52 E-value=1.3e+02 Score=20.76 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCcceeEEEEEEecCCHHHHHHHHHHhhCCEEEEEe
Q 031118 21 ASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRS 56 (165)
Q Consensus 21 ~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~~~~~~~ 56 (165)
.+++++...+ +. +=.+++.||++ +||+.....
T Consensus 109 ~~~~~i~~~v-~~--~N~~~i~~~~~-~GF~~~g~~ 140 (155)
T PF13420_consen 109 LGIHKIYLEV-FS--SNEKAINFYKK-LGFEEEGEL 140 (155)
T ss_dssp TT-CEEEEEE-ET--T-HHHHHHHHH-TTEEEEEEE
T ss_pred cCeEEEEEEE-ec--CCHHHHHHHHh-CCCEEEEEE
Confidence 4577777666 33 67899999996 999987664
No 138
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=26.13 E-value=25 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.0
Q ss_pred EEecCCHHHHHHHHHHhhC
Q 031118 31 LVEAPKATDAVQFYKTAFG 49 (165)
Q Consensus 31 ~v~~~D~~~a~~FY~~vlG 49 (165)
.++ +.++..+||++.|.
T Consensus 18 P~~--~vd~~kDWYktMFk 34 (47)
T PF02208_consen 18 PLS--NVDRPKDWYKTMFK 34 (47)
T ss_pred ccc--cccchhHHHHHHHH
Confidence 346 88999999999775
No 139
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.23 E-value=1.7e+02 Score=18.65 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=22.7
Q ss_pred ccEEEEEEeCC----HHHHHHHHHHCCCeEEec
Q 031118 99 TGCVLCLETED----VEAAVAKAVSAGAVAEGE 127 (165)
Q Consensus 99 ~~~~i~~~V~d----v~~~~~~~~~~G~~i~~~ 127 (165)
..+.+.++|.| .++..+.+.++|.++...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 34567889888 778899999999887643
No 140
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=25.00 E-value=1.6e+02 Score=19.99 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=30.3
Q ss_pred hhcCCCCCCCCCCCCCcceeEEEEEEecCCHHHHHHHHHHhhC
Q 031118 7 VQNGAAPEKAPATAASFTGMKPQLLVEAPKATDAVQFYKTAFG 49 (165)
Q Consensus 7 ~~~~~~~~~~~~~~~~m~~~~~~l~v~~~D~~~a~~FY~~vlG 49 (165)
+-+.+.+-..|-++.|.++++..+.=. |+++-++..++.|.
T Consensus 61 ~~~~~de~~~~v~~~gvt~IHciVde~--NvdeIIeLl~kTFk 101 (102)
T PF03197_consen 61 VDSEKDEVDDPVIKSGVTKIHCIVDEN--NVDEIIELLQKTFK 101 (102)
T ss_pred ecccCccccCcccccCceEEEEEEccC--CHHHHHHHHHHHhc
Confidence 333444455566678999888887777 99999999988763
No 141
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=23.37 E-value=1.5e+02 Score=17.01 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=14.8
Q ss_pred EEEEEcCCCCeEEEEeee
Q 031118 140 VGKVKDPYGFTWLICSPV 157 (165)
Q Consensus 140 ~~~~~DP~G~~~~l~~~~ 157 (165)
...+.||+|....|...+
T Consensus 30 sY~y~~pdG~~~~V~Y~A 47 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTYVA 47 (52)
T ss_pred EEEEECCCCCEEEEEEEC
Confidence 457799999999988765
No 142
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=21.68 E-value=88 Score=18.46 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=18.8
Q ss_pred CCCCCCCCcceeEEEEEEecCCHHHHHHHHHHhhCC
Q 031118 15 KAPATAASFTGMKPQLLVEAPKATDAVQFYKTAFGA 50 (165)
Q Consensus 15 ~~~~~~~~m~~~~~~l~v~~~D~~~a~~FY~~vlG~ 50 (165)
--|-++.||... ... +.++..+||++.|.-
T Consensus 9 igpv~~~giPi~-----~rs-~v~~~~dWYk~Mfkq 38 (50)
T smart00459 9 IVPVDESGIPQA-----PRS-SVERPKDWYRTMFKQ 38 (50)
T ss_pred cccccCCCCccc-----ccc-CcccHHHHHHHHHHH
Confidence 344556666622 221 677888899998863
No 143
>PLN02367 lactoylglutathione lyase
Probab=21.59 E-value=4.1e+02 Score=20.91 Aligned_cols=28 Identities=14% Similarity=-0.003 Sum_probs=20.2
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEEecC
Q 031118 101 CVLCLETEDVEAAVAKAV-SAGAVAEGEL 128 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~-~~G~~i~~~p 128 (165)
.|++|.|.|+++...--. -.|.+++...
T Consensus 77 ~HtmlRVkDle~Sl~FYt~vLGm~ll~r~ 105 (233)
T PLN02367 77 QQTMYRIKDPKASLDFYSRVLGMSLLKRL 105 (233)
T ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeEEE
Confidence 389999999999854432 4577776554
No 144
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=21.50 E-value=94 Score=15.56 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHh
Q 031118 36 KATDAVQFYKTA 47 (165)
Q Consensus 36 D~~~a~~FY~~v 47 (165)
|..++..||++.
T Consensus 20 d~~~A~~~~~~A 31 (36)
T smart00671 20 DLEKALEYYKKA 31 (36)
T ss_pred CHHHHHHHHHHH
Confidence 999999999975
No 145
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=21.39 E-value=62 Score=22.07 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHhhCCEEE
Q 031118 36 KATDAVQFYKTAFGAVEI 53 (165)
Q Consensus 36 D~~~a~~FY~~vlG~~~~ 53 (165)
|. .|..||++ +||...
T Consensus 121 n~-~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 121 RH-DAHRFYLR-EGYEQS 136 (144)
T ss_pred ch-HHHHHHHH-cCCchh
Confidence 54 79999996 999653
No 146
>COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]
Probab=20.85 E-value=1.9e+02 Score=22.82 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHH--CCCeEEecCcc--cccccCCceEEEEEcC-CCC
Q 031118 115 AKAVS--AGAVAEGELAE--GNGACCGERVGKVKDP-YGF 149 (165)
Q Consensus 115 ~~~~~--~G~~i~~~p~~--~~~~~~G~~~~~~~DP-~G~ 149 (165)
+++.+ .+..++.|-.- ... +..+.|+.|| ||.
T Consensus 54 ~~l~~~~P~~~ilgEE~g~~~~~---~~~~~wVIDPIDGT 90 (260)
T COG0483 54 ARLRAAFPDHGILGEESGGALGG---GDEYVWVIDPIDGT 90 (260)
T ss_pred HHHHHHCCCCcEEeeccCccccC---CCceEEEEcCCCCc
Confidence 44444 46667766543 323 3347899999 664
No 147
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.54 E-value=2e+02 Score=17.01 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=19.3
Q ss_pred EEEEEEeCCHHHHHHHHHHCCCeEE
Q 031118 101 CVLCLETEDVEAAVAKAVSAGAVAE 125 (165)
Q Consensus 101 ~~i~~~V~dv~~~~~~~~~~G~~i~ 125 (165)
..+.+.++|.+++.+.+.++|.++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 4566777888888888888887753
No 148
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=20.08 E-value=2.5e+02 Score=21.30 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=18.3
Q ss_pred ccEEEEEEeCCHHHH--HHHHHHCCCeEEec
Q 031118 99 TGCVLCLETEDVEAA--VAKAVSAGAVAEGE 127 (165)
Q Consensus 99 ~~~~i~~~V~dv~~~--~~~~~~~G~~i~~~ 127 (165)
..-||+++|++.+.+ +...+..-|+++.+
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSe 64 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSE 64 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhh
Confidence 345999999997766 44445555687765
Done!