BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031119
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 115/144 (79%), Positives = 129/144 (89%)
Query: 22 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
DWQ+G EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGL
Sbjct: 104 QDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGL 163
Query: 82 DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
DRSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTG
Sbjct: 164 DRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTG 223
Query: 142 QFVEEESEKYGSNIEKAVASFRFI 165
QF +EES + S I+K V SFRFI
Sbjct: 224 QFTDEESAEQSSKIQKTVKSFRFI 247
>sp|Q57124|Y895_HAEIN Uncharacterized transporter HI_0895 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0895
PE=3 SV=1
Length = 1032
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 3 QLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSV----SVVITGLG 58
++A S P ++S AL+AN+ Q AG NG+ ++ E ++ SV +++I+ G
Sbjct: 197 KMAAQNLSVPTVMS-ALSANNVQTAAGNDNGYY-VSYRNKVETTTKSVEQLSNLIISSNG 254
Query: 59 PDFTRMESFGKVE 71
D R+ VE
Sbjct: 255 DDLVRLRDIATVE 267
>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana
GN=AOX1A PE=1 SV=2
Length = 354
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 88 PPGVAAKLIDCKASKGFY----YIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 143
P V L+ CK+ + F +I+ L+ R HL + + +A WY R +T Q
Sbjct: 189 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 248
Query: 144 V 144
V
Sbjct: 249 V 249
>sp|Q8K976|SMG_BUCAP Protein smg OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=smg PE=3 SV=1
Length = 157
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 101 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 143
SK Y + L+N +K++FS+I ++ N NR+YT +F
Sbjct: 37 SKDIYKALHWLKNLSCCKKNIFSSINLSLNHTTNRIYTKKEEF 79
>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 88 PPGVAAKLIDCKASKGFYY----IEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 143
P VA L+ CK+ + F + + L+ R HL + + +A WY R +T Q
Sbjct: 156 PGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 215
Query: 144 V 144
V
Sbjct: 216 V 216
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 86 RRPP---GVAAKLIDCKASKGFYY-------IEYTLQNPGESRKHLFSAI--GMASNGWY 133
R PP ++L +C +KGF+ + +L N + + + + MA+
Sbjct: 708 RHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIVNKLLRSMATQAMS 767
Query: 134 NRLYTVTGQFVEEESEKYGSNIEK 157
N LY TG EEE YG ++K
Sbjct: 768 NALYFSTGSCAEEEFHHYGLALDK 791
>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2
PE=1 SV=2
Length = 297
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 88 PPGVAAKLIDCKASKGFY----YIEYTLQNPGESRKHLFSAIGMASNGWYNR--LYTVTG 141
P V L+ CK+ + F +I+ L+ R HL + + +A WY R ++ V G
Sbjct: 132 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQG 191
Query: 142 QFV 144
F+
Sbjct: 192 VFI 194
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 93 AKLIDCKASKGFYY-------IEYTLQNPGESRKHLFSAI--GMASNGWYNRLYTVTGQF 143
++L +C +KGF+ + +L + + + L + + MA+ N LY TG
Sbjct: 718 SELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPLVNKLLRSMATQAMSNALYFSTGSC 777
Query: 144 VEEESEKYGSNIEK 157
EEE YG ++K
Sbjct: 778 AEEEFHHYGLALDK 791
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 93 AKLIDCKASKGFYY-------IEYTLQNPGESRKHLFSAI--GMASNGWYNRLYTVTGQF 143
++L +C +KGF+ + +L N + + + + MA+ N LY TG
Sbjct: 718 SELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSC 777
Query: 144 VEEESEKYGSNIEK 157
EEE YG ++K
Sbjct: 778 AEEEFHHYGLALDK 791
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,810,441
Number of Sequences: 539616
Number of extensions: 2358844
Number of successful extensions: 5248
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5244
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)