Query         031119
Match_columns 165
No_of_seqs    94 out of 96
Neff          4.3 
Searched_HMMs 46136
Date          Fri Mar 29 09:30:13 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031119hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PLN00059 PsbP domain-containin 100.0 2.7E-38 5.7E-43  271.2  13.7  134   22-165   125-285 (286)
  2 PF01789 PsbP:  PsbP;  InterPro 100.0 5.9E-34 1.3E-38  226.6  12.3  132   22-164    39-174 (175)
  3 PLN00042 photosystem II oxygen 100.0 1.6E-31 3.5E-36  228.2  12.9  131   22-164   106-259 (260)
  4 PLN00067 PsbP domain-containin 100.0 5.2E-30 1.1E-34  219.1  12.5  116   37-164   139-263 (263)
  5 PLN03152 hypothetical protein;  99.9 3.5E-27 7.5E-32  198.6  13.0  110   37-165   119-241 (241)
  6 PLN00066 PsbP domain-containin  99.9 8.8E-27 1.9E-31  199.6  13.3  105   45-165   145-259 (262)
  7 PF08786 DUF1795:  Domain of un  97.7  0.0016 3.5E-08   49.0  12.1  111   36-162    14-130 (130)
  8 PF10738 Lpp-LpqN:  Probable li  96.2    0.18 3.9E-06   41.3  12.7  130   21-164    38-173 (175)
  9 COG5435 Uncharacterized conser  84.5      17 0.00037   29.5  10.0  120   31-164    14-141 (147)
 10 COG4290 Guanyl-specific ribonu  46.0      18 0.00038   29.5   2.4   26  104-129   104-129 (152)
 11 PF07353 Uroplakin_II:  Uroplak  45.6      89  0.0019   26.2   6.5   14  102-115   112-125 (184)
 12 PF08006 DUF1700:  Protein of u  41.7      14  0.0003   29.4   1.2   19   63-81     46-64  (181)
 13 PF09935 DUF2167:  Protein of u  40.9   1E+02  0.0022   26.8   6.3  118   41-164    51-181 (239)
 14 PF12160 Fibrinogen_aC:  Fibrin  33.3      38 0.00082   24.4   2.2   33   41-73     27-59  (69)
 15 PF07526 POX:  Associated with   31.4      25 0.00055   27.8   1.2   28  135-163    81-108 (140)
 16 PF11350 DUF3152:  Protein of u  29.5      60  0.0013   27.7   3.1   85   62-153    41-129 (203)
 17 KOG4693 Uncharacterized conser  28.6      50  0.0011   30.2   2.6   35  108-147     3-37  (392)
 18 PRK02289 4-oxalocrotonate taut  25.7      53  0.0012   21.6   1.8   17   44-60     33-49  (60)
 19 TIGR01307 pgm_bpd_ind 2,3-bisp  22.3      91   0.002   29.7   3.3   24  134-160   181-204 (501)
 20 COG3269 Predicted RNA-binding   22.1 1.7E+02  0.0036   21.2   3.9   31   31-61     30-63  (73)
 21 smart00574 POX domain associat  22.0      47   0.001   26.8   1.1   23  142-164    87-109 (140)
 22 PF12299 DUF3627:  Protein of u  20.9      82  0.0018   22.5   2.1   48  110-161    12-62  (88)

No 1  
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00  E-value=2.7e-38  Score=271.18  Aligned_cols=134  Identities=19%  Similarity=0.349  Sum_probs=118.5

Q ss_pred             cCcee--ccccCCCceeEEEecCCCCCcceEEEEEecCCC-CccccccCCCHHHHHHHHhhccccCC---CCCCCCeeEE
Q 031119           22 NDWQL--GAGEPNGFKSITAFYPQEASSSSVSVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKL   95 (165)
Q Consensus        22 ~~W~~--~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~-dft~L~sfG~p~evae~Lv~~~~rs~---~~ppg~~A~L   95 (165)
                      .||+.  +.|.+..|||++      +.+|||||+|++++. ++++|++||+|+||||+|+++++.+.   +..+|++++|
T Consensus       125 ~GWi~V~~~G~DVvFrD~I------e~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeL  198 (286)
T PLN00059        125 QNWIQVRGAGADIFFRDPV------VLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANI  198 (286)
T ss_pred             CCCeEeccCCCceEEeccC------ccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEE
Confidence            89994  778898999998      999999999999974 46899999999999999999987421   1224799999


Q ss_pred             Eeceec-----CceEEEEEEEeCCC----------------CCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHH
Q 031119           96 IDCKAS-----KGFYYIEYTLQNPG----------------ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN  154 (165)
Q Consensus        96 idA~~r-----k~yY~lEYtv~~P~----------------~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~  154 (165)
                      |+|.+|     +.||+|||++++|+                ++.||++|+|+|.|    ||||||++|+||+||+|+++.
T Consensus       199 VsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~n----GkLYTL~~qtpE~RW~kvk~~  274 (286)
T PLN00059        199 LSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN----DRLYSIRLQTPEKVFLEEEKD  274 (286)
T ss_pred             EEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeC----CEEEEEEcCCcHHHHHHHHHH
Confidence            999999     56999999999972                23899999999999    599999999999999999999


Q ss_pred             HHHhhceeeeC
Q 031119          155 IEKAVASFRFI  165 (165)
Q Consensus       155 ~~~vv~SF~v~  165 (165)
                      |++|++||+|+
T Consensus       275 f~~V~dSF~V~  285 (286)
T PLN00059        275 LRRVMDSFRVE  285 (286)
T ss_pred             HHHHHhheeec
Confidence            99999999985


No 2  
>PF01789 PsbP:  PsbP;  InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection [].  In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00  E-value=5.9e-34  Score=226.65  Aligned_cols=132  Identities=32%  Similarity=0.491  Sum_probs=113.4

Q ss_pred             cCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec
Q 031119           22 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS  101 (165)
Q Consensus        22 ~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r  101 (165)
                      ++|+..++  .|  ..+.|.++...++||||+|+|++.++ +|++||+|++||++|++..++++  ..++.++||++.+|
T Consensus        39 ~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~~~~~~--~~~~~a~li~a~~~  111 (175)
T PF01789_consen   39 SGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNGELASP--GSGREAELISASER  111 (175)
T ss_dssp             TTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHHCCCHC--TSSEEEEEEEEEEE
T ss_pred             CCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhhhcccc--cCCcceEEEEeeee
Confidence            89976555  33  45779999889999999999999997 99999999999999999987431  12499999999999


Q ss_pred             ----CceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          102 ----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       102 ----k~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                          +.||+|||+++.|++..||+++++++.+    ||||||++||||+||+|+++.|++|++||+|
T Consensus       112 ~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~----g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  112 EVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKN----GKLYTLTAQAPESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EETTEEEEEEEEEEEETTEEEEEEEEEEEEET----TEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE
T ss_pred             ecCCccEEEEEEEeccCCCcccEEEEEEEEEC----CEEEEEEEEcCHHHHHHHHHHHHHHHhcEEe
Confidence                5699999999999956899999999976    5999999999999999999999999999997


No 3  
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=99.97  E-value=1.6e-31  Score=228.24  Aligned_cols=131  Identities=20%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             cCce---ec--cccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHH----HHHHHhhccccCC-CC----
Q 031119           22 NDWQ---LG--AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FADTLVSGLDRSW-RR----   87 (165)
Q Consensus        22 ~~W~---~~--~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~e----vae~Lv~~~~rs~-~~----   87 (165)
                      ++|+   +.  .|++.-|+|.+      +.++||||+|+|+  |+++|++||+|+|    |++.|.+.+.... ..    
T Consensus       106 ~~W~~~ke~~~~G~dv~f~D~~------~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf  177 (260)
T PLN00042        106 SKWNPSKEREFPGQVLRFEDNF------DATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGF  177 (260)
T ss_pred             CCCccccccccCCceEEeeccc------cccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCc
Confidence            8997   22  36666666666      8899999999998  4579999999999    7777887765221 00    


Q ss_pred             CCC--CeeEEEeceec----CceEEEEEEEeCCC--CCceeEEEEEEeecCCccceEEEEeccccchhhHHh-HHHHHHh
Q 031119           88 PPG--VAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKA  158 (165)
Q Consensus        88 ppg--~~A~LidA~~r----k~yY~lEYtv~~P~--~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~-~~~~~~v  158 (165)
                      .|+  .+|+||++++|    +.||+|||.+++|+  +..||+|++++|.+    ||||||++|+||+||.|+ ++.|+.|
T Consensus       178 ~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~aqa~EkRW~K~~~k~l~~v  253 (260)
T PLN00042        178 DANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKAQAGDKRWFKGARKFVEGA  253 (260)
T ss_pred             CcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEecCchhhhhHHHHHHHHHH
Confidence            122  27899999999    77999999999997  35799999999988    599999999999999998 6689999


Q ss_pred             hceeee
Q 031119          159 VASFRF  164 (165)
Q Consensus       159 v~SF~v  164 (165)
                      ++||+|
T Consensus       254 ~~SFsV  259 (260)
T PLN00042        254 ASSFSV  259 (260)
T ss_pred             Hhceec
Confidence            999997


No 4  
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.97  E-value=5.2e-30  Score=219.07  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=104.0

Q ss_pred             EEEecCCCCCcceEEEEEecCC-----CCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEE
Q 031119           37 ITAFYPQEASSSSVSVVITGLG-----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYI  107 (165)
Q Consensus        37 V~Af~P~~~~~eNVSVvit~v~-----~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~l  107 (165)
                      .+.|-.  +.++||||||+|+.     +| ++|++||+|++|+++|.+.+.    .++++.++||||++|    ++||+|
T Consensus       139 dv~F~D--~~dgnVSVIVSPV~r~t~k~~-~sIeDlGsPeeVl~~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~~  211 (263)
T PLN00067        139 EVKFED--EKQGKVQVVASPLIRLTNKPN-ATIEEIGSPEKLIASLGPFVT----GNSYDPDELLETSVEKIGDQTYYKY  211 (263)
T ss_pred             eEEEeC--CCCCCEEEEEecccccccCCC-CChHHccCHHHHHHHhhHHhh----cCCCCCcceEEeeeEeeCCeEEEEE
Confidence            355633  66889999999984     45 699999999999999999987    568999999999999    779999


Q ss_pred             EEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          108 EYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       108 EYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      ||.+..+++ .||+|+++++.+    |||||+++|+||+||.|+++.|++|++||+|
T Consensus       212 E~~tp~a~~-gRHnLataTV~~----GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        212 VLETPFALT-GSHNLAKATAKG----NTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EEEecCCCC-CceEEEEEEEEC----CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            999999995 799999988766    5999999999999999999999999999986


No 5  
>PLN03152 hypothetical protein; Provisional
Probab=99.95  E-value=3.5e-27  Score=198.61  Aligned_cols=110  Identities=20%  Similarity=0.340  Sum_probs=89.3

Q ss_pred             EEEecCCCCCcceEEEEEecCC-------CCccccccCCCHHHHHHHHhhccccCCCCCCC---CeeEEEecee-c--Cc
Q 031119           37 ITAFYPQEASSSSVSVVITGLG-------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPG---VAAKLIDCKA-S--KG  103 (165)
Q Consensus        37 V~Af~P~~~~~eNVSVvit~v~-------~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg---~~A~LidA~~-r--k~  103 (165)
                      +.|=+-....+|||||+|++++       .+ ++|.+||+|+|||+.|+.         +|   +.++.++.++ .  |+
T Consensus       119 ~~aRf~s~D~sEnVSVVIspv~~LK~tfle~-kDLtDLGsp~EVgkv~vP---------~g~~~~saR~iel~~E~dGKt  188 (241)
T PLN03152        119 FAARFASPDGSEVLSVVIRPSNQLKITFLEA-KDITDLGSLKEAAKIFVP---------GGATLYSARTIKVKEEEGIRT  188 (241)
T ss_pred             eeeeecCCCCCceEEEEEecCcccccccccc-CChhHcCCHHHHHHhhCC---------CcccccccceeeeeeecCCce
Confidence            4443333455899999999997       55 799999999999977652         32   1344444332 2  88


Q ss_pred             eEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119          104 FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus       104 yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                      ||+|||.++     .||++++|+|.+    |||||+++|++|+||+|++++|+++++||+|+
T Consensus       189 YY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        189 YYFYEFGRD-----EQHVALVATVNS----GKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             eEEEEEEeC-----CcEEEEEEEEcC----CeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            999999986     599999999988    59999999999999999999999999999986


No 6  
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.94  E-value=8.8e-27  Score=199.59  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=95.5

Q ss_pred             CCcceEEEEEecCC------CCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEEEEEEeCC
Q 031119           45 ASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNP  114 (165)
Q Consensus        45 ~~~eNVSVvit~v~------~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~lEYtv~~P  114 (165)
                      ..++||+|+|+|+.      .+.++|++||+|++|+++|.+.++    .++.+.++|+++.++    ++||.|||     
T Consensus       145 ~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~----g~~~~e~eLl~a~~re~dGktYY~~E~-----  215 (262)
T PLN00066        145 DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELI----GEPVEEGKVLSMEVAEHSGRTYYQFEL-----  215 (262)
T ss_pred             CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhc----CCCccccceeEeeeeecCCcEEEEEEE-----
Confidence            56899999999996      144799999999999999999876    557789999999998    77999999     


Q ss_pred             CCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119          115 GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus       115 ~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                         .||+|++|+|.+    ||||||++|+||+||.|+++.|++|++||+|+
T Consensus       216 ---~rH~LasaTV~~----GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        216 ---PPHTLVTATAAG----NRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             ---eCceEEEEEEEC----CEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence               389999999987    59999999999999999999999999999985


No 7  
>PF08786 DUF1795:  Domain of unknown function (DUF1795);  InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=97.66  E-value=0.0016  Score=49.00  Aligned_cols=111  Identities=14%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             eEEEecCCC--CCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEEEE
Q 031119           36 SITAFYPQE--ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEY  109 (165)
Q Consensus        36 ~V~Af~P~~--~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~lEY  109 (165)
                      ++-+|-++.  ....|+.|...+++++       .+.++..++.++.+-+     --..-++++.+.-    ..-+.+||
T Consensus        14 t~nv~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~~~~~~~~~l~~~~a~~l~~   81 (130)
T PF08786_consen   14 TMNVLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQLVERQPITLGGRPARELEY   81 (130)
T ss_dssp             -BEEEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-EEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcEEEeeEEEEeCCCCeEEEEE
Confidence            344554443  3466666666677666       3677888888887732     1223334443332    36889999


Q ss_pred             EEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhcee
Q 031119          110 TLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  162 (165)
Q Consensus       110 tv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF  162 (165)
                      +...++. .-|-.-++.+-.+   +++++||..++....++.++.++++++||
T Consensus        82 ~~~~~g~-~v~Q~q~~~~~~~---~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   82 SFRSGGQ-PVYQRQAAVLLPG---RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEeeCCE-EEEEEEEEEEECC---CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9998885 5676666554442   59999999999999999999999999998


No 8  
>PF10738 Lpp-LpqN:  Probable lipoprotein LpqN;  InterPro: IPR019674  This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []. 
Probab=96.21  E-value=0.18  Score=41.33  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             ccCcee-ccccCCCceeEEEecCC-CCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEec
Q 031119           21 ANDWQL-GAGEPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC   98 (165)
Q Consensus        21 ~~~W~~-~~g~~~g~k~V~Af~P~-~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA   98 (165)
                      +.||+. ........-.+++.-.. +.-..|+-|+++.+..||       +|+|+.+.=-..+.    .-||-+  -+++
T Consensus        38 P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~~----~l~g~~--~~~~  104 (175)
T PF10738_consen   38 PPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADAQ----NLPGFR--ELDG  104 (175)
T ss_pred             CcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhHh----hCcCcc--cccC
Confidence            489996 44456667777777763 233799999999998887       57776554222221    223444  3333


Q ss_pred             eec--C--ceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119           99 KAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus        99 ~~r--k--~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      ..-  .  .-+.+|-+-..++ .+||...-..|.-++-.--|..||+++.+.+-....+..+.|++.|+|
T Consensus       105 s~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  105 SPSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             CccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence            222  2  2567886666666 367776664444444334577899999999999999999999999997


No 9  
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=84.52  E-value=17  Score=29.51  Aligned_cols=120  Identities=18%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             CCCcee--EEEecCCCCCcceEEEEEe--cCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEe-ceec-Cce
Q 031119           31 PNGFKS--ITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-CKAS-KGF  104 (165)
Q Consensus        31 ~~g~k~--V~Af~P~~~~~eNVSVvit--~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~Lid-A~~r-k~y  104 (165)
                      ++.++|  |=+|--+....+-.|.+||  ++.+| .      +-.++.++.+..+-+.  - ||-+.+=-. ..-- .--
T Consensus        14 P~~w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~--L-pgy~~~~~~e~~v~~~aa   83 (147)
T COG5435          14 PAAWQDRSVNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQ--L-PGYELHHRREIEVGGAAA   83 (147)
T ss_pred             cchhccceEEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhh--C-CCeEEeeccccccCcccc
Confidence            445554  4446555555677777887  44444 2      3456777777766321  1 332221111 0000 225


Q ss_pred             EEEEEEEeCC-CCCce-eEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          105 YYIEYTLQNP-GESRK-HLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       105 Y~lEYtv~~P-~~~~R-H~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      -.+||.-+.| .+++| |... +.+.++   .++-.||+.|+-.--++-+...+++|.||..
T Consensus        84 ~~~~y~w~~~~~~~r~v~q~~-~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          84 PLLDYQWTSPEGEQRRVQQRQ-VFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             ceeEEEeecCCCCCceEEEEE-eecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            5677888875 43323 3333 466665   7999999999999999999999999999964


No 10 
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=46.03  E-value=18  Score=29.46  Aligned_cols=26  Identities=31%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             eEEEEEEEeCCCCCceeEEEEEEeec
Q 031119          104 FYYIEYTLQNPGESRKHLFSAIGMAS  129 (165)
Q Consensus       104 yY~lEYtv~~P~~~~RH~la~V~v~~  129 (165)
                      =|+=||||+.|+...|-..=+|+-+-
T Consensus       104 gYYREYTVeTpG~sdRGarRIV~GGd  129 (152)
T COG4290         104 GYYREYTVETPGLSDRGARRIVTGGD  129 (152)
T ss_pred             CcceeeEeeCCCcccCCceeEeeCCC
Confidence            45679999999988887777776443


No 11 
>PF07353 Uroplakin_II:  Uroplakin II;  InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=45.58  E-value=89  Score=26.21  Aligned_cols=14  Identities=29%  Similarity=0.494  Sum_probs=11.6

Q ss_pred             CceEEEEEEEeCCC
Q 031119          102 KGFYYIEYTLQNPG  115 (165)
Q Consensus       102 k~yY~lEYtv~~P~  115 (165)
                      ++.|++-|.|++-+
T Consensus       112 GTkY~isY~Vtkgt  125 (184)
T PF07353_consen  112 GTKYYISYLVTKGT  125 (184)
T ss_pred             CcEEEEEEEEecCc
Confidence            67899999997765


No 12 
>PF08006 DUF1700:  Protein of unknown function (DUF1700);  InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=41.66  E-value=14  Score=29.39  Aligned_cols=19  Identities=11%  Similarity=0.288  Sum_probs=16.4

Q ss_pred             ccccCCCHHHHHHHHhhcc
Q 031119           63 RMESFGKVEAFADTLVSGL   81 (165)
Q Consensus        63 ~L~sfG~p~evae~Lv~~~   81 (165)
                      =+++||+|+++|..++...
T Consensus        46 ii~~LG~P~~iA~~i~~~~   64 (181)
T PF08006_consen   46 IIAELGSPKEIAREILAEY   64 (181)
T ss_pred             HHHHcCCHHHHHHHHHHhh
Confidence            4789999999999998753


No 13 
>PF09935 DUF2167:  Protein of unknown function (DUF2167);  InterPro: IPR018682  This family of various hypothetical membrane-anchored prokaryotic proteins has no known function. 
Probab=40.91  E-value=1e+02  Score=26.82  Aligned_cols=118  Identities=9%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             cCCCCCcceEEEEEecCCCCcccccc--CCCHHHHHHHHhhccccC--CCCCCCC-eeE--------EEeceecCceEEE
Q 031119           41 YPQEASSSSVSVVITGLGPDFTRMES--FGKVEAFADTLVSGLDRS--WRRPPGV-AAK--------LIDCKASKGFYYI  107 (165)
Q Consensus        41 ~P~~~~~eNVSVvit~v~~dft~L~s--fG~p~evae~Lv~~~~rs--~~~ppg~-~A~--------LidA~~rk~yY~l  107 (165)
                      .|.+ .+++-.|+++-...++-+-.+  ==++++.=+.+-.....+  .++..|. .-+        =+|+..++=+|-.
T Consensus        51 ~P~~-~~~~W~v~~~y~~~GyVkDdda~~id~d~LL~~~k~~t~e~N~eR~~~G~~~l~l~GW~~~P~YD~~t~~L~Wa~  129 (239)
T PF09935_consen   51 FPDD-DDEDWFVVFEYEDSGYVKDDDAKNIDYDELLKSMKEGTEESNKERKKRGYPPLHLVGWAEPPHYDAATHRLYWAK  129 (239)
T ss_pred             eccC-CCCCEEEEEEEcCCCceecchhhhCCHHHHHHHHHHhHHhhhHHHHhcCCCceEEeccccCCccCccccEEEEEE
Confidence            3444 677888888877666654443  113444333332221100  0000011 111        2466666667888


Q ss_pred             EEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          108 EYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       108 EYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      |-...... ..--|+.+.+.+|.|    ..+||.-+..++-+.++..++++++.+++
T Consensus       130 ~~~~~~~~-~~~vNYn~r~LGR~G----~~~l~lV~~~~~l~~~k~~~~~lL~~~~f  181 (239)
T PF09935_consen  130 ELKFGGDP-ENTVNYNTRVLGREG----VLSLNLVADPDQLPAVKPEAQALLSAVEF  181 (239)
T ss_pred             eeecCCCC-CceEEEEEEEeecce----EEEEEEecCHHHHHHHHHHHHHHHhhccC
Confidence            87666643 257899999999974    78999999999999999999999988764


No 14 
>PF12160 Fibrinogen_aC:  Fibrinogen alpha C domain;  InterPro: IPR021996  This domain family is found in eukaryotes, and is approximately 70 amino acids in length, and the family is found in association with PF08702 from PFAM. This domain is the C-terminal domain of fibrinogen in mammals. The domain lies in the C-terminal half of the alpha C region in these proteins. The function of the domain is that of intramolecular and intermolecular interactions to form fibrin. ; PDB: 2BAF_A 2JOR_A.
Probab=33.35  E-value=38  Score=24.39  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             cCCCCCcceEEEEEecCCCCccccccCCCHHHH
Q 031119           41 YPQEASSSSVSVVITGLGPDFTRMESFGKVEAF   73 (165)
Q Consensus        41 ~P~~~~~eNVSVvit~v~~dft~L~sfG~p~ev   73 (165)
                      +|.|-.++-+-|+.+.=++|=.++.+|+...-|
T Consensus        27 gpdG~kE~~~Evv~s~dGsdC~~~~dl~~~~~f   59 (69)
T PF12160_consen   27 GPDGPKEETKEVVTSEDGSDCGDLGDLGTSHTF   59 (69)
T ss_dssp             ETTTEEEEEEEEEB-SSSSSCTTC--S------
T ss_pred             CCCCCcEEEEEEeecCCCccccchhcccccccc
Confidence            999999999999999999998888888754433


No 15 
>PF07526 POX:  Associated with HOX;  InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=31.42  E-value=25  Score=27.84  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             eEEEEeccccchhhHHhHHHHHHhhceee
Q 031119          135 RLYTVTGQFVEEESEKYGSNIEKAVASFR  163 (165)
Q Consensus       135 rLYTltaq~~E~rW~k~~~~~~~vv~SF~  163 (165)
                      ||.++ .+-.|+|..+|.++++.||.||.
T Consensus        81 KLl~m-L~eVd~RY~qY~~Qmq~VvssFe  108 (140)
T PF07526_consen   81 KLLSM-LDEVDRRYRQYYDQMQAVVSSFE  108 (140)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 45678899999999999999996


No 16 
>PF11350 DUF3152:  Protein of unknown function (DUF3152);  InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=29.52  E-value=60  Score=27.67  Aligned_cols=85  Identities=19%  Similarity=0.233  Sum_probs=49.6

Q ss_pred             cccccCCCHHHHHHHHhhccc--cCCCCCCCCeeEEEeceecCceEEEEEEEeCCCCCceeEEEEEEeecCCccceEE--
Q 031119           62 TRMESFGKVEAFADTLVSGLD--RSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLY--  137 (165)
Q Consensus        62 t~L~sfG~p~evae~Lv~~~~--rs~~~ppg~~A~LidA~~rk~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLY--  137 (165)
                      -....||..++||..+-..|.  |+|.+.....-..+++.+    ..|.-.+..|..  .+.+.. +..-.|-+.=..  
T Consensus        41 i~~~~~gg~~~fA~~V~~tL~DpRgW~~~g~~~F~rV~~~~----~Df~I~Lasp~T--~~~lC~-g~~~~~e~SC~~~~  113 (203)
T PF11350_consen   41 IDVDAYGGDDAFAAMVDATLADPRGWTADGRVRFQRVDSGA----PDFRISLASPGT--TDRLCA-GLDTSGETSCRNPA  113 (203)
T ss_pred             cCCcccccHHHHHHHHHHHhcCCCCCCcCCCEEEEECCCCC----CCEEEEECCcch--hhhhcc-CcCcCceeEeecCC
Confidence            577889999999998877664  446554455666676665    667777777874  444441 111111000111  


Q ss_pred             EEeccccchhhHHhHH
Q 031119          138 TVTGQFVEEESEKYGS  153 (165)
Q Consensus       138 Tltaq~~E~rW~k~~~  153 (165)
                      .=.+-.|++||-+=-.
T Consensus       114 g~~VvIN~~RWv~Ga~  129 (203)
T PF11350_consen  114 GGRVVINLARWVRGAP  129 (203)
T ss_pred             CCeEEEehHHhhccCc
Confidence            1134468899976433


No 17 
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=28.57  E-value=50  Score=30.18  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=29.6

Q ss_pred             EEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchh
Q 031119          108 EYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEE  147 (165)
Q Consensus       108 EYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~r  147 (165)
                      -.||++.+..+|-|-|+|+|+.     |.|.+-+-|..++
T Consensus         3 ~WTVHLeGGPrRVNHAavaVG~-----riYSFGGYCsGed   37 (392)
T KOG4693|consen    3 TWTVHLEGGPRRVNHAAVAVGS-----RIYSFGGYCSGED   37 (392)
T ss_pred             eEEEEecCCcccccceeeeecc-----eEEecCCcccccc
Confidence            4789999988999999999977     9999988776543


No 18 
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=25.71  E-value=53  Score=21.56  Aligned_cols=17  Identities=18%  Similarity=0.339  Sum_probs=14.1

Q ss_pred             CCCcceEEEEEecCCCC
Q 031119           44 EASSSSVSVVITGLGPD   60 (165)
Q Consensus        44 ~~~~eNVSVvit~v~~d   60 (165)
                      +.+.++|+|+|..+++|
T Consensus        33 ~~p~~~v~V~i~ev~~~   49 (60)
T PRK02289         33 KAPKEAIHVFINDMPEG   49 (60)
T ss_pred             CcCcceEEEEEEEeChh
Confidence            35589999999999776


No 19 
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=22.34  E-value=91  Score=29.74  Aligned_cols=24  Identities=8%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             ceEEEEeccccchhhHHhHHHHHHhhc
Q 031119          134 NRLYTVTGQFVEEESEKYGSNIEKAVA  160 (165)
Q Consensus       134 grLYTltaq~~E~rW~k~~~~~~~vv~  160 (165)
                      ||.|++.=   +.||++++...+.++.
T Consensus       181 GRyyaMDR---d~rw~rv~~ay~~~~~  204 (501)
T TIGR01307       181 GRYYAMDR---DQRWDRVEIAYKAITG  204 (501)
T ss_pred             CcceeecC---ccchHHHHHHHHHHhc
Confidence            69997765   8899999999988864


No 20 
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=22.13  E-value=1.7e+02  Score=21.24  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=26.0

Q ss_pred             CCCceeE---EEecCCCCCcceEEEEEecCCCCc
Q 031119           31 PNGFKSI---TAFYPQEASSSSVSVVITGLGPDF   61 (165)
Q Consensus        31 ~~g~k~V---~Af~P~~~~~eNVSVvit~v~~df   61 (165)
                      -.|..+|   ++|-|.....+.|.|.|+.+.++|
T Consensus        30 GDGiarveGfvVFVp~a~~Gd~V~vkI~~v~~~~   63 (73)
T COG3269          30 GDGIARVEGFVVFVPGAEVGDEVKVKITKVKPNF   63 (73)
T ss_pred             CCceEEEEEEEEEeCCCCCCCeeeEEEEEeeccc
Confidence            3455555   899999999999999999998876


No 21 
>smart00574 POX domain associated with HOX domains.
Probab=22.04  E-value=47  Score=26.80  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             cccchhhHHhHHHHHHhhceeee
Q 031119          142 QFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       142 q~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      +-.|+|..+|-++++.|+.||..
T Consensus        87 ~eVd~RY~qY~~qmq~v~ssFe~  109 (140)
T smart00574       87 EEVDRRYKHYYEQMQTVVSSFDQ  109 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999964


No 22 
>PF12299 DUF3627:  Protein of unknown function (DUF3627);  InterPro: IPR022549  This domain is found in bacteria and viruses, and is approximately 90 amino acids in length. The domain is found C-terminal to PF02498 from PFAM. 
Probab=20.92  E-value=82  Score=22.48  Aligned_cols=48  Identities=17%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             EEeCCCCC-ceeEEEEEEeecCCccceEEEEecccc--chhhHHhHHHHHHhhce
Q 031119          110 TLQNPGES-RKHLFSAIGMASNGWYNRLYTVTGQFV--EEESEKYGSNIEKAVAS  161 (165)
Q Consensus       110 tv~~P~~~-~RH~la~V~v~~~G~~grLYTltaq~~--E~rW~k~~~~~~~vv~S  161 (165)
                      ++..|... .+|-|++ +.- +|  ..+|++++|-.  +.+|.+++...+-++++
T Consensus        12 ~v~~P~d~~k~~~l~v-~~~-~~--~~y~~irgQ~~~~~~~k~k~~~~~~ii~d~   62 (88)
T PF12299_consen   12 RVPYPRDPSKHPRLAV-LKN-DG--NQYAFIRGQKRYVRRRKKKLKKDMEIIYDS   62 (88)
T ss_pred             cccCCCCCCcceEEEE-EEe-CC--cEEEEEehhHHHHHHHHHHhcCCceEEEEc
Confidence            45667654 4566655 433 23  69999999854  45677776555555443


Done!