Query 031119
Match_columns 165
No_of_seqs 94 out of 96
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 8.2E-32 2.8E-36 210.1 16.4 133 21-165 23-165 (165)
2 2lnj_A SLL1418 protein, putati 99.9 1.8E-33 6E-38 222.2 0.0 136 21-165 29-170 (170)
3 1v2b_A 23-kDa polypeptide of p 100.0 1.7E-29 5.9E-34 202.6 12.8 137 21-165 22-177 (177)
4 1tu1_A Hypothetical protein PA 97.5 0.0015 5.2E-08 49.7 11.7 113 37-164 24-141 (148)
5 3lyd_A Uncharacterized protein 96.7 0.11 3.6E-06 41.1 14.9 140 9-165 7-158 (161)
6 1e0n_A Hypothetical protein; Y 25.2 16 0.00055 20.4 0.1 17 134-150 10-26 (27)
7 2ysi_A Transcription elongatio 20.8 23 0.0008 21.2 0.2 17 134-150 20-36 (40)
8 4h4n_A Hypothetical protein BA 20.0 67 0.0023 21.7 2.4 19 36-54 20-38 (67)
9 1e0l_A Formin binding protein; 19.2 26 0.00089 20.5 0.2 17 134-150 16-32 (37)
10 1ylx_A Hypothetical protein AP 17.8 3E+02 0.01 20.1 5.8 65 93-161 32-103 (103)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.98 E-value=8.2e-32 Score=210.14 Aligned_cols=133 Identities=25% Similarity=0.424 Sum_probs=116.5
Q ss_pred ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCC--CCeeEEEec
Q 031119 21 ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDC 98 (165)
Q Consensus 21 ~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~pp--g~~A~LidA 98 (165)
+++|...+.. . ...++|.|+...++||+|+|+|+++ +++|++||+|++||++|++... ++| ++.++|+++
T Consensus 23 P~~W~~~~~~-~--g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~----~~~~~~~~~~l~~a 94 (165)
T 2xb3_A 23 PRGWVQVQVE-D--PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII----APSESGRSSALIAA 94 (165)
T ss_dssp ETTEEEECCC-T--TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT----SCTTSSCEEEEEEE
T ss_pred CCCCeEecCC-C--CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh----cCCCCCcceEEEEe
Confidence 4799975531 1 3578899998889999999999987 4799999999999999999865 444 899999999
Q ss_pred eec----CceEEEEEEEeCCC----CCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119 99 KAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 165 (165)
Q Consensus 99 ~~r----k~yY~lEYtv~~P~----~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~ 165 (165)
.+| +.||+|||+++.|+ +..||.|+++++.+ ||||||++|+||+||+|+++.|++|++||+++
T Consensus 95 ~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 95 TSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp EEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred eeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence 998 56999999999998 35899999999875 59999999999999999999999999999986
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.95 E-value=1.8e-33 Score=222.19 Aligned_cols=136 Identities=16% Similarity=0.247 Sum_probs=120.2
Q ss_pred ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCC--CCeeEEEec
Q 031119 21 ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDC 98 (165)
Q Consensus 21 ~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~pp--g~~A~LidA 98 (165)
+++|+..++..++....++|.++...++||+|+|+|++++ ++|++||+|++||++|++.+. ++| ++.++||++
T Consensus 29 P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~~----~~~~~~~~a~li~a 103 (170)
T 2lnj_A 29 PNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTVN----DASQGDRQAELINA 103 (170)
Confidence 4899976655444456789999999999999999999886 799999999999999999876 444 899999999
Q ss_pred eec----CceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119 99 KAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 165 (165)
Q Consensus 99 ~~r----k~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~ 165 (165)
.+| +.||++||+++.|+...||.++++++.+ ||||||++|+||++|+|.++.|++|++||+|+
T Consensus 104 ~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 104 EARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 998 5699999999999435899999988865 69999999999999999999999999999985
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.96 E-value=1.7e-29 Score=202.63 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=102.4
Q ss_pred ccCceecc-ccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHH----HHHHhhccccCCC-CCC-----
Q 031119 21 ANDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF----ADTLVSGLDRSWR-RPP----- 89 (165)
Q Consensus 21 ~~~W~~~~-g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~ev----ae~Lv~~~~rs~~-~pp----- 89 (165)
+++|.... -+..| ..++|..+-+.++||||+|+|++. ++|++||+|++| |+.|.+....+.. ..+
T Consensus 22 P~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~ 97 (177)
T 1v2b_A 22 PSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESD 97 (177)
T ss_dssp ETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC------------------
T ss_pred CCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccC
Confidence 47998422 11222 356677777789999999999944 799999999995 5555554432100 012
Q ss_pred -CCeeEEEeceec----CceEEEEEEEeCCCC--CceeEEEEEEeecCCccceEEEEeccccchhhHHh-HHHHHHhhce
Q 031119 90 -GVAAKLIDCKAS----KGFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVAS 161 (165)
Q Consensus 90 -g~~A~LidA~~r----k~yY~lEYtv~~P~~--~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~-~~~~~~vv~S 161 (165)
.+.|+||+|.+| +.||++||.++.|+. ..||+|++++|.+ ||||||++|+||+||+|. ++.|++|++|
T Consensus 98 ~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~e~~W~k~~~~~l~~v~~S 173 (177)
T 1v2b_A 98 AVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATS 173 (177)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHT
T ss_pred cccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecCHHHhhhhHHHHHHHHHhh
Confidence 388999999999 669999999999982 4799999999976 599999999999999995 9999999999
Q ss_pred eeeC
Q 031119 162 FRFI 165 (165)
Q Consensus 162 F~v~ 165 (165)
|+|.
T Consensus 174 F~v~ 177 (177)
T 1v2b_A 174 FSLA 177 (177)
T ss_dssp CEEC
T ss_pred eecC
Confidence 9983
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=97.53 E-value=0.0015 Score=49.67 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=73.3
Q ss_pred EEEecCC-CCCc--ceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCC-CeeEEEeceec-CceEEEEEEE
Q 031119 37 ITAFYPQ-EASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG-VAAKLIDCKAS-KGFYYIEYTL 111 (165)
Q Consensus 37 V~Af~P~-~~~~--eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg-~~A~LidA~~r-k~yY~lEYtv 111 (165)
+.+|..+ +... -|+.|...++++| .+.++..++-++.+-+. - |+ +...+-.+.-+ ..--.+||+-
T Consensus 24 ~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~--l-~~y~~~~~~~~~l~g~~a~~~e~~~ 93 (148)
T 1tu1_A 24 INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ--L-PGFKLHKRWDINIHGHAAVLLDYQW 93 (148)
T ss_dssp BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH--S-TTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh--C-cCcEEeeeEeEEEcCCcEEEEEEEE
Confidence 4555543 3222 5666666677666 35666666655554211 1 21 11111111112 2357788888
Q ss_pred eCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119 112 QNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 164 (165)
Q Consensus 112 ~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v 164 (165)
..++ ..+|-+-++.+.. +++|.||.+|+...|+..+..++.+++||++
T Consensus 94 ~~~g-~~~~Q~q~~~~~~----~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 94 QREG-RDLMLRQVFIERR----PAVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp EETT-EEEEEEEEEECCS----SSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred ccCC-EEEEEEEEEEEEC----CeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 8777 4799999866644 2999999999999999999999999999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=96.66 E-value=0.11 Score=41.13 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=92.8
Q ss_pred ccchhhhhhhhh------ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccc
Q 031119 9 CSFPAIVSYALA------ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 82 (165)
Q Consensus 9 ~~~~~~~~~~~~------~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~ 82 (165)
..||-..-+|+. ++||++.....+ +=-+..=.|++.=..||-|.+..++.|+ | ++.-..|-+.+.
T Consensus 7 ~~~ps~~fp~~p~~~v~~P~gWe~~~~~~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~ 77 (161)
T 3lyd_A 7 IRYPSTEFPALTGFTVPIPETWQPDPTMGT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT 77 (161)
T ss_dssp EEESCSSSCCCCEEEEECCTTEEECTTSSS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT
T ss_pred eeCCccccCCCceeeccCCCCceEcCCCCc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh
Confidence 345544444443 589998765444 2222223334455899999999998885 2 333333333221
Q ss_pred cCCCCCCCCeeEEEeceec--CceEEEEEEEeCCCCCceeE--EEEEEeecCCccceEEEE--eccccchhhHHhHHHHH
Q 031119 83 RSWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIE 156 (165)
Q Consensus 83 rs~~~ppg~~A~LidA~~r--k~yY~lEYtv~~P~~~~RH~--la~V~v~~~G~~grLYTl--taq~~E~rW~k~~~~~~ 156 (165)
+-|+.+-.-..-.+. ..-|.+||.-..|.- .+|. +..+.|.++ +..|.+ |++|.+.+-+.+.+.++
T Consensus 78 ----~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~---~v~~vv~lt~T~~~~q~~~~~~d~q 149 (161)
T 3lyd_A 78 ----QLPDYAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHP---HAVDIIQLTATCAGDQTADYWDTFR 149 (161)
T ss_dssp ----TSTTCEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECS---SCEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred ----hCCCcEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecC---CEEEEEEEEEEeccccchHHHHHHH
Confidence 225555544444444 348999999988885 4663 566788887 467766 99999999999999999
Q ss_pred HhhceeeeC
Q 031119 157 KAVASFRFI 165 (165)
Q Consensus 157 ~vv~SF~v~ 165 (165)
++++|++|.
T Consensus 150 ~iv~sl~v~ 158 (161)
T 3lyd_A 150 LMHADLTVQ 158 (161)
T ss_dssp HHHHTCEEE
T ss_pred HHhheeEec
Confidence 999999973
No 6
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=25.25 E-value=16 Score=20.39 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=15.0
Q ss_pred ceEEEEeccccchhhHH
Q 031119 134 NRLYTVTGQFVEEESEK 150 (165)
Q Consensus 134 grLYTltaq~~E~rW~k 150 (165)
||.|=+|+.+.|+.|++
T Consensus 10 g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 10 GRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp SSEEEEETTTTEEESSC
T ss_pred CCeEEEECCCCCEeccC
Confidence 69999999999999963
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=20.77 E-value=23 Score=21.23 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=15.3
Q ss_pred ceEEEEeccccchhhHH
Q 031119 134 NRLYTVTGQFVEEESEK 150 (165)
Q Consensus 134 grLYTltaq~~E~rW~k 150 (165)
|+.|=.|..+.|+.|+|
T Consensus 20 G~~YYyN~~T~eS~We~ 36 (40)
T 2ysi_A 20 GKVYYYNARTRESAWTK 36 (40)
T ss_dssp SCEEEEETTTCCEESSC
T ss_pred CCEEEEECCCCCEEeCC
Confidence 58999999999999976
No 8
>4h4n_A Hypothetical protein BA_2335; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.10A {Bacillus anthracis}
Probab=19.98 E-value=67 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.2
Q ss_pred eEEEecCCCCCcceEEEEE
Q 031119 36 SITAFYPQEASSSSVSVVI 54 (165)
Q Consensus 36 ~V~Af~P~~~~~eNVSVvi 54 (165)
+|+-|||-.+--.|||+|=
T Consensus 20 kvtffgp~nevitnvsiin 38 (67)
T 4h4n_A 20 KVTFFGPYNEVITNVSIIN 38 (67)
T ss_dssp EEEEECTTSCEEEEEEEEE
T ss_pred EEEEecchhhhhhhHHHHH
Confidence 5788999998899999864
No 9
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=19.25 E-value=26 Score=20.51 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.3
Q ss_pred ceEEEEeccccchhhHH
Q 031119 134 NRLYTVTGQFVEEESEK 150 (165)
Q Consensus 134 grLYTltaq~~E~rW~k 150 (165)
||.|=.|..+.|+.|++
T Consensus 16 G~~YYyN~~T~es~We~ 32 (37)
T 1e0l_A 16 GKTYYYNNRTLESTWEK 32 (37)
T ss_dssp SCEEEEETTTTEEESSC
T ss_pred CCEEEEECCCCCEEecC
Confidence 58999999999999976
No 10
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=17.83 E-value=3e+02 Score=20.15 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=38.8
Q ss_pred eEEEeceecCceEEEEEEEeCCCCCceeEEEEEEeecCCccceE------EEEeccccchh-hHHhHHHHHHhhce
Q 031119 93 AKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRL------YTVTGQFVEEE-SEKYGSNIEKAVAS 161 (165)
Q Consensus 93 A~LidA~~rk~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grL------YTltaq~~E~r-W~k~~~~~~~vv~S 161 (165)
.-+.+-...++-|+|-|||++-+. -=|+=.-..=..+ |+| .|+-.--+|.+ ...+.+.++.|+.|
T Consensus 32 vgifEEeGegn~YY~GYTVkKdd~-~~~ih~Pfikded---G~La~ekqeWTi~~d~~e~~Gy~sle~Al~e~ih~ 103 (103)
T 1ylx_A 32 VGIFEEHGEGNRYYVGYTINKDDE-MITIHMPFVKNER---GELALEKQEWTVRKDGREKKGFHSLQEAMEEVIHS 103 (103)
T ss_dssp EEEEEEECSTTEEEEEEEEEETTE-EEEEEEEEEECTT---SCEEECCSCEEEEETTEEEEEECSHHHHHHHHHCC
T ss_pred eeeeeecCCCceEEEEEEEccCCe-EEEEeccceecCC---CceeeecceeEEecCCccccchhhHHHHHHHHhcC
Confidence 344555555889999999999884 3343333333334 344 34444444433 55577888888765
Done!