BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031121
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Chaps
 pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Chaps
 pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Cymal-5
 pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Cymal-5
          Length = 482

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 77  ITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEK 133
           I EVL D LE +      +G +   ++  E N   F+S      E  F +LQ+ETE+
Sbjct: 147 INEVLADFLERMDELCDERGRI--PDLYSELNKWSFESICLVLYEKRFGLLQKETEE 201


>pdb|1VKW|A Chain A, Crystal Structure Of A Putative Nitroreductase (tm1586)
           From Thermotoga Maritima Msb8 At 2.00 A Resolution
          Length = 218

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 78  TEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSML 127
            E + D +EN+   F++K      ++  + NLS F S + +  E HF  L
Sbjct: 34  PERVKDDIENLLVKFITK------KLDWKINLSSFPSYIYAKAEKHFDEL 77


>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
           Inhibitor Bay73-6691
 pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
           Inhibitor Bay73-6691
 pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
 pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
          Length = 533

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 10/42 (23%)

Query: 114 SEVQSSQEHHFSMLQR----------ETEKLRSDIEKMRSEL 145
           +E+++   +H ++L++          E EK +SDI+KMR EL
Sbjct: 111 NELKAEVANHLAVLEKRVELEGLKVVEIEKCKSDIKKMREEL 152


>pdb|3K9I|A Chain A, Crystal Structure Of Putative Protein Binding Protein
           (np_241345.1) From Bacillus Halodurans At 2.71 A
           Resolution
          Length = 117

 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 57  VRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKS 114
           V GLEAQ VP  +    +    + L +    +  TF + GE +K E +    + +F +
Sbjct: 2   VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/13 (76%), Positives = 13/13 (100%)

Query: 130 ETEKLRSDIEKMR 142
           ETEKLRSD+E++R
Sbjct: 961 ETEKLRSDVERLR 973


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,814,047
Number of Sequences: 62578
Number of extensions: 119778
Number of successful extensions: 454
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 14
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)