Query 031121
Match_columns 165
No_of_seqs 144 out of 289
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3156 Uncharacterized membra 100.0 4.1E-39 8.9E-44 265.4 14.0 135 30-165 25-159 (220)
2 PF07798 DUF1640: Protein of u 100.0 3.3E-36 7.1E-41 241.4 13.2 116 50-165 1-116 (177)
3 COG3937 Uncharacterized conser 95.4 0.25 5.3E-06 37.6 9.5 79 55-146 28-107 (108)
4 TIGR01837 PHA_granule_1 poly(h 95.2 0.41 8.9E-06 36.4 10.5 89 54-142 25-116 (118)
5 PF02183 HALZ: Homeobox associ 94.6 0.14 2.9E-06 33.1 5.4 41 105-146 3-43 (45)
6 COG3524 KpsE Capsule polysacch 93.0 0.58 1.3E-05 41.8 8.1 134 18-158 108-280 (372)
7 PF07798 DUF1640: Protein of u 92.0 1 2.2E-05 36.1 7.8 16 138-153 129-144 (177)
8 PF10805 DUF2730: Protein of u 91.5 3.8 8.1E-05 30.5 9.9 59 88-146 27-89 (106)
9 PRK11546 zraP zinc resistance 88.7 6.2 0.00014 31.3 9.5 73 65-151 44-118 (143)
10 PF05377 FlaC_arch: Flagella a 86.8 2.6 5.6E-05 28.5 5.4 36 111-147 4-39 (55)
11 cd04766 HTH_HspR Helix-Turn-He 86.6 2.2 4.8E-05 30.3 5.4 26 50-75 43-69 (91)
12 PF09969 DUF2203: Uncharacteri 86.2 9 0.0002 29.3 8.9 64 65-152 3-66 (120)
13 PRK10884 SH3 domain-containing 86.2 4.9 0.00011 33.5 8.0 50 109-159 120-172 (206)
14 PF09738 DUF2051: Double stran 85.3 9.3 0.0002 33.7 9.6 69 78-146 83-164 (302)
15 PRK15178 Vi polysaccharide exp 84.5 5.1 0.00011 37.1 7.9 38 49-86 196-233 (434)
16 PF04420 CHD5: CHD5-like prote 83.9 4.4 9.5E-05 32.2 6.4 54 99-152 39-96 (161)
17 PF06156 DUF972: Protein of un 81.8 11 0.00025 28.2 7.6 40 103-150 18-57 (107)
18 PF11559 ADIP: Afadin- and alp 81.6 22 0.00047 27.4 10.8 49 67-119 30-78 (151)
19 PRK00888 ftsB cell division pr 81.4 5.3 0.00012 29.7 5.7 30 122-151 41-72 (105)
20 PRK13182 racA polar chromosome 80.8 18 0.00039 29.4 9.0 22 50-71 42-63 (175)
21 PF04380 BMFP: Membrane fusoge 80.1 17 0.00036 25.7 7.6 42 105-146 33-74 (79)
22 KOG3156 Uncharacterized membra 79.9 19 0.0004 30.6 9.0 46 112-161 99-144 (220)
23 PF14723 SSFA2_C: Sperm-specif 78.5 11 0.00024 31.0 7.1 59 95-153 118-176 (179)
24 PF02183 HALZ: Homeobox associ 77.7 5.1 0.00011 25.7 4.0 25 121-145 11-35 (45)
25 TIGR03545 conserved hypothetic 77.6 37 0.00081 32.3 11.3 94 66-161 162-265 (555)
26 PF06810 Phage_GP20: Phage min 76.6 25 0.00053 27.9 8.5 55 106-160 33-89 (155)
27 cd00187 TOP4c DNA Topoisomeras 76.3 14 0.00031 34.1 8.0 30 116-145 399-428 (445)
28 PF08776 VASP_tetra: VASP tetr 75.2 14 0.00031 23.4 5.4 10 108-117 4-13 (40)
29 PF05597 Phasin: Poly(hydroxya 73.6 41 0.00088 26.2 9.1 42 102-143 89-130 (132)
30 PRK13169 DNA replication intia 72.5 28 0.00061 26.4 7.5 41 99-147 14-54 (110)
31 PF14257 DUF4349: Domain of un 72.4 22 0.00048 29.7 7.7 29 122-150 162-190 (262)
32 PF07407 Seadorna_VP6: Seadorn 72.0 4.4 9.5E-05 36.7 3.4 20 125-144 42-61 (420)
33 cd04776 HTH_GnyR Helix-Turn-He 71.8 39 0.00085 25.2 9.3 27 50-76 41-67 (118)
34 PRK14074 rpsF 30S ribosomal pr 70.2 71 0.0015 27.7 10.2 42 62-103 11-63 (257)
35 COG1561 Uncharacterized stress 69.9 45 0.00097 29.5 9.2 65 93-157 154-229 (290)
36 PRK13729 conjugal transfer pil 69.7 16 0.00035 34.3 6.7 43 102-145 78-120 (475)
37 PF09677 TrbI_Ftype: Type-F co 69.6 19 0.00041 27.2 6.0 46 45-90 30-79 (111)
38 TIGR01061 parC_Gpos DNA topois 69.4 44 0.00096 32.8 9.9 21 55-75 397-418 (738)
39 PF05266 DUF724: Protein of un 68.1 66 0.0014 26.4 12.4 21 55-75 76-96 (190)
40 TIGR01834 PHA_synth_III_E poly 67.2 71 0.0015 28.6 10.0 88 56-147 213-314 (320)
41 PRK09631 DNA topoisomerase IV 67.1 41 0.00088 32.7 9.0 13 64-76 384-396 (635)
42 KOG2391 Vacuolar sorting prote 67.0 1E+02 0.0022 28.1 10.9 37 123-159 254-290 (365)
43 PF15254 CCDC14: Coiled-coil d 66.8 15 0.00032 36.6 6.1 43 121-163 386-428 (861)
44 PF04977 DivIC: Septum formati 66.6 26 0.00057 23.4 5.8 18 124-141 33-50 (80)
45 PRK13169 DNA replication intia 66.5 28 0.00062 26.4 6.4 19 125-143 39-57 (110)
46 PF03477 ATP-cone: ATP cone do 65.9 14 0.0003 25.7 4.3 57 44-104 6-67 (90)
47 PF04380 BMFP: Membrane fusoge 65.6 43 0.00093 23.6 6.9 21 78-100 34-54 (79)
48 PF08340 DUF1732: Domain of un 63.4 40 0.00087 24.7 6.5 29 91-119 6-34 (87)
49 KOG1962 B-cell receptor-associ 63.2 72 0.0016 27.0 8.8 28 123-150 180-210 (216)
50 PRK10803 tol-pal system protei 63.1 33 0.00072 29.2 7.0 31 122-152 68-101 (263)
51 COG2433 Uncharacterized conser 63.0 32 0.00069 33.4 7.4 24 123-146 437-460 (652)
52 TIGR02209 ftsL_broad cell divi 62.1 38 0.00083 23.2 6.0 21 123-143 39-59 (85)
53 PF06156 DUF972: Protein of un 61.9 41 0.00088 25.3 6.5 19 125-143 39-57 (107)
54 TIGR01063 gyrA DNA gyrase, A s 61.9 59 0.0013 32.2 9.3 20 56-75 398-418 (800)
55 TIGR01062 parC_Gneg DNA topois 61.3 42 0.00091 33.1 8.1 12 141-152 453-464 (735)
56 cd04786 HTH_MerR-like_sg7 Heli 61.1 43 0.00094 25.6 6.7 26 50-75 43-68 (131)
57 PF12329 TMF_DNA_bd: TATA elem 60.7 54 0.0012 22.8 7.0 43 103-146 29-71 (74)
58 PF10079 DUF2317: Uncharacteri 60.5 1.3E+02 0.0029 28.5 11.1 96 53-152 386-482 (542)
59 PRK05561 DNA topoisomerase IV 60.5 43 0.00092 33.0 8.0 25 120-144 435-459 (742)
60 PRK11546 zraP zinc resistance 60.4 77 0.0017 25.2 8.1 63 93-156 44-116 (143)
61 cd07667 BAR_SNX30 The Bin/Amph 60.1 1E+02 0.0023 26.3 9.4 64 90-160 149-212 (240)
62 PF07334 IFP_35_N: Interferon- 60.1 16 0.00034 26.2 3.7 23 125-147 3-25 (76)
63 PRK04220 2-phosphoglycerate ki 59.7 30 0.00066 30.5 6.3 59 43-105 9-67 (301)
64 PF07106 TBPIP: Tat binding pr 59.0 57 0.0012 25.5 7.2 19 127-145 114-132 (169)
65 KOG4196 bZIP transcription fac 58.9 89 0.0019 24.7 8.9 39 104-146 74-112 (135)
66 cd01106 HTH_TipAL-Mta Helix-Tu 57.8 57 0.0012 23.4 6.5 27 50-76 43-69 (103)
67 KOG0971 Microtubule-associated 57.8 74 0.0016 32.7 9.1 35 122-156 472-506 (1243)
68 PHA01750 hypothetical protein 56.4 42 0.00091 23.7 5.3 35 113-147 33-67 (75)
69 TIGR01843 type_I_hlyD type I s 56.3 1.3E+02 0.0029 25.9 10.5 7 92-98 192-198 (423)
70 PF14769 CLAMP: Flagellar C1a 55.1 26 0.00057 25.4 4.4 33 51-86 1-33 (101)
71 TIGR00987 himA integration hos 54.6 34 0.00073 24.5 4.9 35 52-86 3-38 (96)
72 PF02344 Myc-LZ: Myc leucine z 54.6 21 0.00045 21.6 3.0 21 123-143 9-29 (32)
73 TIGR00219 mreC rod shape-deter 54.5 71 0.0015 27.6 7.6 45 90-138 63-107 (283)
74 PF13801 Metal_resist: Heavy-m 54.5 71 0.0015 22.2 10.9 82 56-151 33-116 (125)
75 PF00038 Filament: Intermediat 54.5 1.3E+02 0.0029 25.4 12.3 48 106-154 215-262 (312)
76 PRK10664 transcriptional regul 54.1 29 0.00062 24.9 4.4 32 55-86 5-37 (90)
77 PRK10476 multidrug resistance 53.9 98 0.0021 26.7 8.5 17 89-105 145-161 (346)
78 PRK00888 ftsB cell division pr 53.9 47 0.001 24.7 5.6 45 106-151 33-77 (105)
79 PF06580 His_kinase: Histidine 53.6 16 0.00034 25.6 2.9 37 47-85 11-47 (82)
80 TIGR00219 mreC rod shape-deter 53.5 23 0.00049 30.6 4.4 16 126-141 70-85 (283)
81 PF04977 DivIC: Septum formati 52.9 48 0.001 22.1 5.2 40 107-147 24-63 (80)
82 PF09726 Macoilin: Transmembra 52.6 30 0.00066 33.8 5.5 23 121-143 459-481 (697)
83 PRK06569 F0F1 ATP synthase sub 52.6 1.2E+02 0.0026 24.3 10.8 33 130-162 111-150 (155)
84 PF03915 AIP3: Actin interacti 52.4 1.7E+02 0.0037 27.1 10.1 21 124-144 248-268 (424)
85 PF05791 Bacillus_HBL: Bacillu 52.3 1E+02 0.0023 24.7 7.8 17 145-161 168-184 (184)
86 KOG2010 Double stranded RNA bi 52.2 67 0.0015 29.3 7.2 64 83-146 123-199 (405)
87 PRK01919 tatB sec-independent 52.1 1.1E+02 0.0023 25.1 7.8 28 126-153 58-85 (169)
88 cd01107 HTH_BmrR Helix-Turn-He 51.7 71 0.0015 23.2 6.3 28 49-76 43-70 (108)
89 PRK12337 2-phosphoglycerate ki 51.7 35 0.00076 32.1 5.6 57 45-105 88-144 (475)
90 smart00340 HALZ homeobox assoc 51.5 22 0.00049 22.9 3.0 20 124-143 14-33 (44)
91 TIGR02209 ftsL_broad cell divi 51.3 46 0.001 22.8 5.0 29 106-135 30-58 (85)
92 cd04765 HTH_MlrA-like_sg2 Heli 50.9 50 0.0011 23.9 5.3 33 43-75 33-69 (99)
93 PRK12758 DNA topoisomerase IV 50.9 83 0.0018 31.8 8.3 12 64-75 405-416 (869)
94 PF09731 Mitofilin: Mitochondr 50.7 82 0.0018 29.4 7.9 23 99-121 250-272 (582)
95 smart00338 BRLZ basic region l 50.5 68 0.0015 21.2 5.5 37 108-145 27-63 (65)
96 PRK03598 putative efflux pump 50.4 1.6E+02 0.0035 25.1 10.1 63 83-145 132-201 (331)
97 PF13097 CENP-U: CENP-A nucleo 50.3 1.4E+02 0.0031 24.5 8.3 37 109-145 137-175 (175)
98 TIGR02054 MerD mercuric resist 50.2 71 0.0015 24.2 6.2 29 49-77 45-73 (120)
99 PRK04654 sec-independent trans 50.2 93 0.002 26.4 7.4 9 109-117 56-64 (214)
100 PRK05291 trmE tRNA modificatio 50.2 87 0.0019 28.6 7.8 43 65-116 120-162 (449)
101 PRK15396 murein lipoprotein; P 50.0 54 0.0012 23.4 5.2 11 90-100 19-29 (78)
102 COG4467 Regulator of replicati 49.7 75 0.0016 24.4 6.1 42 98-147 13-54 (114)
103 PF09278 MerR-DNA-bind: MerR, 49.7 69 0.0015 20.7 5.8 23 52-74 2-24 (65)
104 PF10146 zf-C4H2: Zinc finger- 49.6 1.3E+02 0.0027 25.6 8.2 34 122-155 67-103 (230)
105 PF06006 DUF905: Bacterial pro 49.6 6.1 0.00013 27.9 0.2 17 64-80 7-23 (70)
106 TIGR01069 mutS2 MutS2 family p 49.2 2.8E+02 0.006 27.5 13.2 12 54-68 486-497 (771)
107 COG2074 2-phosphoglycerate kin 49.2 15 0.00032 32.4 2.6 78 9-86 93-184 (299)
108 PF12325 TMF_TATA_bd: TATA ele 49.1 1.2E+02 0.0026 23.2 12.1 47 106-152 67-119 (120)
109 cd04779 HTH_MerR-like_sg4 Heli 49.0 1.2E+02 0.0026 23.3 9.2 26 50-75 42-67 (134)
110 PF08317 Spc7: Spc7 kinetochor 48.8 1.8E+02 0.004 25.3 10.6 27 116-142 203-229 (325)
111 PF11932 DUF3450: Protein of u 48.4 1.6E+02 0.0035 24.5 10.7 14 106-119 55-68 (251)
112 PF10925 DUF2680: Protein of u 48.2 41 0.00089 22.7 4.1 28 55-82 22-50 (59)
113 TIGR02043 ZntR Zn(II)-responsi 48.1 1.2E+02 0.0026 22.9 8.2 26 50-75 44-69 (131)
114 PF11853 DUF3373: Protein of u 48.1 32 0.0007 32.4 4.8 9 108-116 32-40 (489)
115 PF11180 DUF2968: Protein of u 47.1 1.3E+02 0.0029 25.1 7.7 54 93-146 112-178 (192)
116 PF07407 Seadorna_VP6: Seadorn 46.4 25 0.00055 32.0 3.6 11 106-116 45-55 (420)
117 PF08317 Spc7: Spc7 kinetochor 46.1 2E+02 0.0044 25.0 11.1 35 108-143 210-244 (325)
118 PF05701 WEMBL: Weak chloropla 46.1 1.1E+02 0.0025 28.6 8.1 61 95-156 280-353 (522)
119 KOG0249 LAR-interacting protei 45.9 1.6E+02 0.0036 29.6 9.2 36 109-145 225-260 (916)
120 PF05852 DUF848: Gammaherpesvi 45.7 1.5E+02 0.0033 23.6 7.6 49 106-155 67-115 (146)
121 PF00216 Bac_DNA_binding: Bact 45.7 44 0.00096 22.9 4.2 33 54-86 4-37 (90)
122 PF10186 Atg14: UV radiation r 45.4 1.7E+02 0.0037 24.0 10.8 10 107-116 70-79 (302)
123 PRK13723 conjugal transfer pil 44.9 2.7E+02 0.0058 26.1 12.2 95 55-150 341-440 (451)
124 PRK14126 cell division protein 44.9 95 0.0021 22.1 5.9 22 126-147 62-83 (85)
125 cd07604 BAR_ASAPs The Bin/Amph 44.8 1.8E+02 0.004 24.2 9.7 35 106-144 99-133 (215)
126 COG1579 Zn-ribbon protein, pos 44.8 2E+02 0.0044 24.6 9.6 25 93-117 52-76 (239)
127 cd07623 BAR_SNX1_2 The Bin/Amp 44.8 1.8E+02 0.0038 24.0 10.8 40 121-160 155-194 (224)
128 PRK10884 SH3 domain-containing 44.7 1.6E+02 0.0034 24.5 7.9 36 108-144 133-168 (206)
129 TIGR03752 conj_TIGR03752 integ 44.7 62 0.0013 30.5 6.0 21 125-145 119-139 (472)
130 PF05384 DegS: Sensor protein 44.5 1.6E+02 0.0036 23.6 9.4 51 94-145 14-64 (159)
131 PLN02939 transferase, transfer 44.4 1.5E+02 0.0033 30.4 9.0 40 108-147 202-251 (977)
132 PF10224 DUF2205: Predicted co 44.4 1.2E+02 0.0025 21.8 6.6 46 95-141 18-63 (80)
133 TIGR01201 HU_rel DNA-binding p 44.2 52 0.0011 25.5 4.8 37 50-86 30-67 (145)
134 smart00411 BHL bacterial (prok 43.6 68 0.0015 22.1 4.9 33 54-86 4-37 (90)
135 cd01111 HTH_MerD Helix-Turn-He 43.6 1.3E+02 0.0028 22.1 7.2 26 50-75 43-68 (107)
136 PRK10753 transcriptional regul 43.4 53 0.0011 23.4 4.4 32 55-86 5-37 (90)
137 KOG1899 LAR transmembrane tyro 42.9 2.4E+02 0.0052 28.1 9.7 42 81-122 155-196 (861)
138 PRK00285 ihfA integration host 42.9 63 0.0014 23.1 4.7 36 51-86 3-39 (99)
139 PF03938 OmpH: Outer membrane 42.6 1.2E+02 0.0026 22.9 6.6 15 46-60 17-31 (158)
140 cd04784 HTH_CadR-PbrR Helix-Tu 42.3 1.4E+02 0.0031 22.1 8.3 26 50-75 43-68 (127)
141 cd04752 Commd4 COMM_Domain con 42.3 42 0.00091 26.8 4.1 32 48-79 57-88 (174)
142 cd07596 BAR_SNX The Bin/Amphip 42.2 1.6E+02 0.0035 22.8 11.7 95 65-159 79-189 (218)
143 TIGR03545 conserved hypothetic 42.2 1.2E+02 0.0027 28.8 7.7 15 126-140 216-230 (555)
144 PRK00199 ihfB integration host 42.2 65 0.0014 22.8 4.7 32 55-86 5-38 (94)
145 TIGR00988 hip integration host 42.1 66 0.0014 22.7 4.7 33 54-86 4-38 (94)
146 cd04755 Commd7 COMM_Domain con 42.0 71 0.0015 26.2 5.4 37 47-83 65-101 (180)
147 KOG2264 Exostosin EXT1L [Signa 42.0 2.2E+02 0.0048 28.2 9.3 50 106-156 106-155 (907)
148 PRK09514 zntR zinc-responsive 41.9 1.4E+02 0.0029 22.9 6.7 26 50-75 44-69 (140)
149 PF07106 TBPIP: Tat binding pr 41.6 1.2E+02 0.0026 23.7 6.5 23 50-73 16-38 (169)
150 COG2433 Uncharacterized conser 41.3 1.3E+02 0.0029 29.4 7.7 21 125-145 446-466 (652)
151 cd00591 HU_IHF Integration hos 41.1 60 0.0013 22.1 4.3 31 56-86 5-36 (87)
152 PF06005 DUF904: Protein of un 41.0 1.2E+02 0.0027 21.1 7.8 46 106-152 24-69 (72)
153 COG5185 HEC1 Protein involved 41.0 2E+02 0.0044 27.6 8.7 40 105-144 349-390 (622)
154 PF09730 BicD: Microtubule-ass 40.8 3.8E+02 0.0082 26.7 11.0 46 106-152 96-150 (717)
155 COG3883 Uncharacterized protei 40.7 2.5E+02 0.0054 24.5 10.0 45 108-153 60-104 (265)
156 PHA02592 52 DNA topisomerase I 40.5 98 0.0021 28.7 6.6 29 116-144 396-424 (439)
157 PRK09039 hypothetical protein; 40.4 2.6E+02 0.0057 24.7 11.4 25 132-156 175-199 (343)
158 COG2960 Uncharacterized protei 40.2 1.6E+02 0.0035 22.3 8.2 20 127-146 71-90 (103)
159 PF10234 Cluap1: Clusterin-ass 40.2 1.4E+02 0.0029 26.1 7.1 49 97-145 159-213 (267)
160 cd04764 HTH_MlrA-like_sg1 Heli 39.7 43 0.00092 21.9 3.2 25 50-74 42-66 (67)
161 PRK13717 conjugal transfer pro 39.3 1.2E+02 0.0026 23.8 6.0 43 47-89 46-92 (128)
162 PF03148 Tektin: Tektin family 39.0 2.9E+02 0.0063 24.8 11.5 85 71-159 217-303 (384)
163 TIGR00606 rad50 rad50. This fa 38.8 4.5E+02 0.0098 27.4 11.7 62 91-153 879-940 (1311)
164 PF06200 tify: tify domain; I 38.7 37 0.0008 20.9 2.5 21 45-76 13-33 (36)
165 KOG2307 Low density lipoprotei 38.7 1.3E+02 0.0027 29.5 7.1 90 50-144 32-132 (705)
166 smart00787 Spc7 Spc7 kinetocho 38.5 2.8E+02 0.006 24.5 10.0 108 43-155 108-240 (312)
167 PRK13979 DNA topoisomerase IV 38.4 1E+02 0.0023 31.4 6.9 12 64-75 426-437 (957)
168 cd04782 HTH_BltR Helix-Turn-He 38.3 1.3E+02 0.0029 21.4 5.9 25 50-74 43-67 (97)
169 PF00804 Syntaxin: Syntaxin; 38.3 1.3E+02 0.0028 20.5 8.0 29 126-154 42-70 (103)
170 PF04799 Fzo_mitofusin: fzo-li 38.3 2.2E+02 0.0047 23.3 7.6 45 100-144 120-166 (171)
171 cd04775 HTH_Cfa-like Helix-Tur 37.9 1.2E+02 0.0026 21.8 5.6 25 50-74 43-67 (102)
172 PRK00409 recombination and DNA 37.8 4.2E+02 0.009 26.3 13.1 13 53-68 490-502 (782)
173 PF09712 PHA_synth_III_E: Poly 37.7 2.7E+02 0.006 24.2 9.8 29 56-84 196-227 (293)
174 PF15066 CAGE1: Cancer-associa 37.5 3.7E+02 0.0081 25.7 10.7 70 81-151 371-440 (527)
175 PRK10698 phage shock protein P 36.8 1.8E+02 0.0039 24.2 7.2 20 125-144 116-135 (222)
176 TIGR01010 BexC_CtrB_KpsE polys 36.8 2.8E+02 0.0062 24.1 11.7 25 63-87 138-162 (362)
177 PF00627 UBA: UBA/TS-N domain; 36.8 42 0.00091 19.8 2.5 20 55-74 4-23 (37)
178 PF06818 Fez1: Fez1; InterPro 36.7 54 0.0012 27.5 3.9 14 106-119 93-106 (202)
179 cd01110 HTH_SoxR Helix-Turn-He 36.4 1.8E+02 0.0038 22.3 6.6 26 50-75 43-68 (139)
180 PF05008 V-SNARE: Vesicle tran 36.4 1.3E+02 0.0029 20.2 7.1 38 109-146 41-78 (79)
181 cd04777 HTH_MerR-like_sg1 Heli 36.3 1.5E+02 0.0032 21.3 5.9 24 51-74 42-65 (107)
182 PF07989 Microtub_assoc: Micro 36.3 1.5E+02 0.0033 20.8 6.5 41 104-144 18-58 (75)
183 PF03904 DUF334: Domain of unk 36.0 2.8E+02 0.0061 23.8 9.7 44 111-154 101-145 (230)
184 PRK09174 F0F1 ATP synthase sub 35.9 2.5E+02 0.0054 23.1 9.2 19 99-117 104-122 (204)
185 COG5185 HEC1 Protein involved 35.9 3.2E+02 0.0069 26.4 9.1 57 106-163 388-447 (622)
186 PF07716 bZIP_2: Basic region 35.8 1.1E+02 0.0024 19.6 4.6 22 122-143 32-53 (54)
187 PF07295 DUF1451: Protein of u 35.7 2.2E+02 0.0048 22.5 8.4 55 93-147 33-98 (146)
188 PRK13749 transcriptional regul 35.6 1.6E+02 0.0036 22.4 6.2 28 50-77 46-73 (121)
189 PF08898 DUF1843: Domain of un 35.6 72 0.0016 21.4 3.7 18 125-142 34-51 (53)
190 KOG0977 Nuclear envelope prote 35.0 1.7E+02 0.0038 28.1 7.5 43 106-149 154-196 (546)
191 PF10025 DUF2267: Uncharacteri 34.9 50 0.0011 24.7 3.3 35 52-86 1-37 (125)
192 PF02909 TetR_C: Tetracyclin r 34.8 61 0.0013 23.5 3.7 30 55-84 49-78 (139)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.4 2E+02 0.0044 21.7 10.8 36 108-144 60-95 (132)
194 COG2960 Uncharacterized protei 34.4 2E+02 0.0044 21.7 6.8 31 117-147 54-84 (103)
195 TIGR02047 CadR-PbrR Cd(II)/Pb( 34.3 2E+02 0.0043 21.5 9.0 26 50-75 43-68 (127)
196 cd04752 Commd4 COMM_Domain con 34.3 1.1E+02 0.0023 24.5 5.2 35 51-85 22-56 (174)
197 cd07665 BAR_SNX1 The Bin/Amphi 34.3 2.9E+02 0.0063 23.4 10.2 40 121-160 165-204 (234)
198 PRK11637 AmiB activator; Provi 34.2 3.5E+02 0.0075 24.3 11.6 34 108-142 220-253 (428)
199 TIGR02971 heterocyst_DevB ABC 34.1 2.9E+02 0.0063 23.4 10.2 19 87-105 126-144 (327)
200 KOG1161 Protein involved in va 34.0 2.7E+02 0.006 24.9 8.1 64 75-144 47-115 (310)
201 PF01025 GrpE: GrpE; InterPro 33.6 60 0.0013 25.0 3.6 26 126-151 29-54 (165)
202 COG2919 Septum formation initi 33.5 85 0.0019 23.5 4.3 23 122-144 64-86 (117)
203 PRK00464 nrdR transcriptional 33.4 1.2E+02 0.0026 24.2 5.3 59 40-102 50-112 (154)
204 PF00170 bZIP_1: bZIP transcri 33.1 1.4E+02 0.0031 19.5 6.1 16 127-142 45-60 (64)
205 KOG4460 Nuclear pore complex, 33.0 4.7E+02 0.01 25.7 9.9 27 79-105 562-588 (741)
206 KOG1962 B-cell receptor-associ 32.9 3.1E+02 0.0066 23.3 8.8 12 106-117 157-168 (216)
207 PRK09841 cryptic autophosphory 32.9 3.8E+02 0.0082 26.0 9.6 19 65-83 237-255 (726)
208 PF00804 Syntaxin: Syntaxin; 32.9 1.6E+02 0.0035 20.0 5.8 29 94-122 43-71 (103)
209 smart00165 UBA Ubiquitin assoc 32.9 73 0.0016 18.4 3.1 21 55-75 3-23 (37)
210 TIGR03185 DNA_S_dndD DNA sulfu 32.8 4.4E+02 0.0096 25.1 10.1 20 124-143 232-251 (650)
211 PRK05560 DNA gyrase subunit A; 32.7 2E+02 0.0044 28.6 7.8 16 125-140 433-448 (805)
212 cd01109 HTH_YyaN Helix-Turn-He 32.7 1.9E+02 0.0042 20.9 7.9 27 50-76 43-69 (113)
213 PF11917 DUF3435: Protein of u 32.7 1.7E+02 0.0036 26.4 6.8 97 47-151 238-343 (418)
214 PRK15002 redox-sensitivie tran 32.5 1.6E+02 0.0034 23.2 5.9 27 50-76 53-79 (154)
215 PRK14161 heat shock protein Gr 32.4 2.6E+02 0.0056 22.7 7.2 17 133-149 44-60 (178)
216 TIGR03755 conj_TIGR03755 integ 32.2 1.8E+02 0.004 27.0 6.9 35 122-156 350-386 (418)
217 PRK14160 heat shock protein Gr 32.2 2.7E+02 0.0059 23.4 7.5 32 122-153 75-106 (211)
218 TIGR02894 DNA_bind_RsfA transc 32.2 1.2E+02 0.0026 24.7 5.1 21 124-144 113-133 (161)
219 PRK14143 heat shock protein Gr 32.2 1.8E+02 0.0039 24.8 6.5 20 130-149 89-108 (238)
220 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.1 2E+02 0.0042 21.8 6.2 59 91-150 50-108 (132)
221 PF11116 DUF2624: Protein of u 32.1 65 0.0014 23.5 3.3 27 53-79 17-45 (85)
222 TIGR01005 eps_transp_fam exopo 32.0 2.2E+02 0.0048 27.4 7.9 24 133-156 320-343 (754)
223 cd04769 HTH_MerR2 Helix-Turn-H 31.9 2.1E+02 0.0045 21.0 8.1 26 50-75 42-67 (116)
224 KOG3612 PHD Zn-finger protein 31.9 1.4E+02 0.0031 28.8 6.3 48 64-117 423-470 (588)
225 KOG2264 Exostosin EXT1L [Signa 31.8 4.4E+02 0.0096 26.2 9.6 52 92-144 99-150 (907)
226 KOG0995 Centromere-associated 31.8 4.8E+02 0.01 25.4 9.8 40 106-145 314-355 (581)
227 PF04508 Pox_A_type_inc: Viral 31.7 78 0.0017 17.8 2.8 17 130-146 2-18 (23)
228 PF08172 CASP_C: CASP C termin 31.6 1.7E+02 0.0036 25.0 6.3 42 105-147 91-132 (248)
229 PRK10803 tol-pal system protei 31.5 1.5E+02 0.0034 25.1 6.1 44 99-143 60-103 (263)
230 PRK14872 rod shape-determining 31.3 77 0.0017 28.5 4.3 26 122-147 57-82 (337)
231 PHA02562 46 endonuclease subun 31.2 4.1E+02 0.0089 24.2 11.0 38 106-144 336-373 (562)
232 PF05384 DegS: Sensor protein 31.1 92 0.002 25.0 4.3 24 127-150 25-48 (159)
233 COG0776 HimA Bacterial nucleoi 31.0 1.2E+02 0.0025 22.4 4.6 31 56-86 7-38 (94)
234 PF04728 LPP: Lipoprotein leuc 31.0 1.7E+02 0.0037 19.8 6.2 23 123-145 25-47 (56)
235 cd04785 HTH_CadR-PbrR-like Hel 30.7 2.3E+02 0.0049 21.1 8.3 26 50-75 43-68 (126)
236 PF01166 TSC22: TSC-22/dip/bun 30.6 82 0.0018 21.6 3.4 31 113-144 13-43 (59)
237 cd01279 HTH_HspR-like Helix-Tu 30.5 2E+02 0.0044 20.5 5.9 27 50-76 43-70 (98)
238 PRK09973 putative outer membra 30.4 1.7E+02 0.0037 21.3 5.3 8 91-98 19-26 (85)
239 COG2074 2-phosphoglycerate kin 30.4 1.2E+02 0.0026 26.9 5.2 55 45-104 9-63 (299)
240 PRK14150 heat shock protein Gr 30.3 2.3E+02 0.005 23.2 6.7 40 109-152 43-82 (193)
241 smart00806 AIP3 Actin interact 30.2 3.7E+02 0.008 25.1 8.6 38 109-146 233-274 (426)
242 PF11382 DUF3186: Protein of u 30.2 88 0.0019 27.3 4.4 25 122-146 39-63 (308)
243 TIGR00255 conserved hypothetic 30.2 1.8E+02 0.0039 25.4 6.4 25 92-116 212-236 (291)
244 cd04789 HTH_Cfa Helix-Turn-Hel 30.1 2.1E+02 0.0046 20.5 6.2 22 50-71 43-64 (102)
245 KOG4807 F-actin binding protei 30.0 4.8E+02 0.01 24.7 9.7 59 97-155 411-489 (593)
246 PF04156 IncA: IncA protein; 29.9 2.7E+02 0.0059 21.8 7.4 12 7-18 14-25 (191)
247 PF12808 Mto2_bdg: Micro-tubul 29.9 73 0.0016 21.2 3.0 22 121-142 28-49 (52)
248 COG0188 GyrA Type IIA topoisom 29.9 1.8E+02 0.0039 29.2 6.9 15 62-76 412-426 (804)
249 PRK00050 16S rRNA m(4)C1402 me 29.7 2.4E+02 0.0051 24.7 7.0 122 20-155 108-229 (296)
250 PF13411 MerR_1: MerR HTH fami 29.6 49 0.0011 21.4 2.2 26 50-75 42-67 (69)
251 PRK14127 cell division protein 29.4 93 0.002 23.6 3.9 23 124-146 46-68 (109)
252 TIGR01730 RND_mfp RND family e 29.4 3E+02 0.0066 22.6 7.4 19 43-61 49-67 (322)
253 PRK14148 heat shock protein Gr 29.4 2.3E+02 0.005 23.5 6.5 27 126-152 58-84 (195)
254 PRK11820 hypothetical protein; 29.4 1.9E+02 0.0041 25.2 6.4 25 92-116 209-233 (288)
255 PF10211 Ax_dynein_light: Axon 29.3 3.1E+02 0.0067 22.2 11.2 9 145-153 168-176 (189)
256 PF11853 DUF3373: Protein of u 29.3 49 0.0011 31.3 2.8 35 125-160 34-68 (489)
257 PRK14140 heat shock protein Gr 29.1 2E+02 0.0043 23.7 6.1 27 126-152 55-81 (191)
258 PF10168 Nup88: Nuclear pore c 29.1 5.4E+02 0.012 25.4 10.0 14 106-119 578-591 (717)
259 cd04750 Commd2 COMM_Domain con 29.1 93 0.002 24.7 4.1 32 48-79 49-80 (166)
260 cd01282 HTH_MerR-like_sg3 Heli 28.9 1.8E+02 0.0038 21.3 5.3 27 50-76 42-68 (112)
261 PF01486 K-box: K-box region; 28.8 2.2E+02 0.0047 20.3 6.0 53 93-145 46-98 (100)
262 KOG0577 Serine/threonine prote 28.7 2.8E+02 0.0061 27.8 7.8 36 121-156 497-532 (948)
263 cd00194 UBA Ubiquitin Associat 28.7 94 0.002 18.0 3.1 22 55-76 3-24 (38)
264 PRK00488 pheS phenylalanyl-tRN 28.6 4.4E+02 0.0095 23.7 9.1 72 92-163 19-98 (339)
265 PF09325 Vps5: Vps5 C terminal 28.5 3.1E+02 0.0066 21.9 10.8 38 123-160 171-208 (236)
266 KOG1760 Molecular chaperone Pr 28.4 2.9E+02 0.0064 21.7 6.5 23 133-155 81-103 (131)
267 PF07820 TraC: TraC-like prote 28.4 1.3E+02 0.0027 22.4 4.3 21 132-152 46-66 (92)
268 TIGR00006 S-adenosyl-methyltra 28.4 2.7E+02 0.0059 24.5 7.2 76 20-102 110-185 (305)
269 KOG4348 Adaptor protein CMS/SE 28.3 1.4E+02 0.003 28.5 5.5 12 141-152 609-620 (627)
270 PF01795 Methyltransf_5: MraW 28.3 1.4E+02 0.003 26.5 5.3 77 20-103 111-187 (310)
271 PF12329 TMF_DNA_bd: TATA elem 28.3 2.1E+02 0.0045 19.9 7.6 42 106-147 11-58 (74)
272 KOG3647 Predicted coiled-coil 28.3 2.5E+02 0.0054 25.1 6.8 25 121-145 132-156 (338)
273 PRK14472 F0F1 ATP synthase sub 28.2 2.9E+02 0.0064 21.6 9.2 11 105-115 75-85 (175)
274 cd01108 HTH_CueR Helix-Turn-He 28.2 2.5E+02 0.0055 20.9 8.5 26 50-75 43-68 (127)
275 COG3524 KpsE Capsule polysacch 28.0 2.7E+02 0.0059 25.3 7.1 87 62-149 208-308 (372)
276 COG0486 ThdF Predicted GTPase 27.9 2.8E+02 0.006 26.1 7.4 15 65-79 122-136 (454)
277 TIGR01950 SoxR redox-sensitive 27.7 2.6E+02 0.0056 21.6 6.2 26 50-75 43-68 (142)
278 PF08287 DASH_Spc19: Spc19; I 27.6 2.2E+02 0.0047 22.6 5.9 44 102-145 48-91 (153)
279 PHA00727 hypothetical protein 27.6 2.1E+02 0.0045 24.6 6.0 43 107-149 35-77 (278)
280 TIGR02977 phageshock_pspA phag 27.5 3.2E+02 0.007 22.3 7.2 20 125-144 116-135 (219)
281 KOG3758 Uncharacterized conser 27.4 6.1E+02 0.013 25.0 10.8 40 54-93 16-55 (655)
282 COG1561 Uncharacterized stress 27.4 4.4E+02 0.0095 23.4 8.9 26 91-116 210-235 (290)
283 PRK14162 heat shock protein Gr 27.4 2.4E+02 0.0052 23.3 6.3 16 133-148 64-79 (194)
284 PF11932 DUF3450: Protein of u 27.3 3.6E+02 0.0079 22.4 12.2 33 106-139 62-94 (251)
285 cd04790 HTH_Cfa-like_unk Helix 27.2 3.2E+02 0.0069 21.7 7.1 26 50-75 44-69 (172)
286 PF02993 MCPVI: Minor capsid p 27.0 21 0.00046 30.7 0.0 73 10-82 14-92 (238)
287 PF12128 DUF3584: Protein of u 26.9 7.3E+02 0.016 25.7 11.9 29 126-154 729-757 (1201)
288 smart00576 BTP Bromodomain tra 26.9 1.6E+02 0.0035 20.2 4.5 36 55-91 11-46 (77)
289 PF06005 DUF904: Protein of un 26.7 2.3E+02 0.0049 19.8 8.3 36 108-144 19-54 (72)
290 PF03131 bZIP_Maf: bZIP Maf tr 26.7 12 0.00025 27.0 -1.4 77 53-144 11-87 (92)
291 PRK14158 heat shock protein Gr 26.7 2.5E+02 0.0054 23.2 6.3 24 128-151 60-83 (194)
292 PRK12556 tryptophanyl-tRNA syn 26.6 3.3E+02 0.0071 24.1 7.4 58 96-153 256-315 (332)
293 PF11221 Med21: Subunit 21 of 26.5 3E+02 0.0065 21.2 7.3 18 80-97 66-83 (144)
294 PRK14145 heat shock protein Gr 26.5 2.6E+02 0.0057 23.2 6.4 28 125-152 62-89 (196)
295 PF13581 HATPase_c_2: Histidin 26.5 1.4E+02 0.003 21.3 4.3 33 58-90 17-49 (125)
296 PF09730 BicD: Microtubule-ass 26.4 3.4E+02 0.0074 27.0 8.0 31 106-137 33-63 (717)
297 cd07664 BAR_SNX2 The Bin/Amphi 26.2 4E+02 0.0086 22.5 10.8 40 121-160 165-204 (234)
298 PF12836 HHH_3: Helix-hairpin- 26.1 1.2E+02 0.0025 20.1 3.6 35 58-101 14-49 (65)
299 PF04880 NUDE_C: NUDE protein, 26.0 93 0.002 25.3 3.6 20 126-146 35-54 (166)
300 PF13720 Acetyltransf_11: Udp 25.9 2.2E+02 0.0047 20.0 5.1 26 59-84 22-47 (83)
301 COG1792 MreC Cell shape-determ 25.9 4.2E+02 0.0091 22.9 7.8 41 91-136 64-104 (284)
302 cd04758 Commd10 COMM_Domain co 25.8 1.9E+02 0.004 23.2 5.3 34 50-83 72-105 (186)
303 KOG2129 Uncharacterized conser 25.8 2.4E+02 0.0052 26.7 6.5 18 134-151 290-307 (552)
304 PRK14139 heat shock protein Gr 25.7 2.6E+02 0.0056 22.9 6.2 17 133-149 57-73 (185)
305 CHL00118 atpG ATP synthase CF0 25.6 3.2E+02 0.0068 21.1 9.2 9 106-114 80-88 (156)
306 cd07598 BAR_FAM92 The Bin/Amph 25.6 3.9E+02 0.0084 22.1 11.5 95 52-155 68-168 (211)
307 PF08498 Sterol_MT_C: Sterol m 25.6 1.2E+02 0.0025 21.1 3.5 31 51-81 13-43 (67)
308 cd04788 HTH_NolA-AlbR Helix-Tu 25.5 2.5E+02 0.0054 19.9 5.6 26 50-75 43-68 (96)
309 PF04999 FtsL: Cell division p 25.5 1.8E+02 0.0039 20.5 4.7 21 123-143 50-70 (97)
310 cd01104 HTH_MlrA-CarA Helix-Tu 25.4 84 0.0018 20.2 2.7 24 50-73 43-66 (68)
311 KOG0946 ER-Golgi vesicle-tethe 25.4 4.7E+02 0.01 26.8 8.8 28 34-61 597-628 (970)
312 PF06810 Phage_GP20: Phage min 25.4 2.9E+02 0.0063 21.8 6.2 40 106-146 26-68 (155)
313 PF03233 Cauli_AT: Aphid trans 25.2 3.8E+02 0.0082 21.9 8.3 62 55-116 91-158 (163)
314 KOG4643 Uncharacterized coiled 25.2 2.8E+02 0.0061 29.0 7.3 41 106-147 183-223 (1195)
315 PF11262 Tho2: Transcription f 25.2 2.4E+02 0.0053 24.4 6.3 23 127-149 65-87 (298)
316 PF07888 CALCOCO1: Calcium bin 25.1 6.3E+02 0.014 24.4 10.9 18 66-83 302-319 (546)
317 smart00422 HTH_MERR helix_turn 25.0 74 0.0016 20.5 2.4 24 52-75 45-68 (70)
318 PF10224 DUF2205: Predicted co 24.9 2.5E+02 0.0054 20.1 5.2 36 108-144 24-59 (80)
319 TIGR03752 conj_TIGR03752 integ 24.8 6E+02 0.013 24.1 10.4 21 125-145 112-132 (472)
320 TIGR00013 taut 4-oxalocrotonat 24.8 1.2E+02 0.0026 19.3 3.4 24 62-85 9-32 (63)
321 PRK15025 ureidoglycolate dehyd 24.8 93 0.002 27.9 3.7 25 56-80 12-36 (349)
322 PF14915 CCDC144C: CCDC144C pr 24.8 5.1E+02 0.011 23.2 10.2 43 58-100 77-119 (305)
323 PRK13260 2,3-diketo-L-gulonate 24.8 93 0.002 27.6 3.7 25 56-80 12-36 (332)
324 PRK14154 heat shock protein Gr 24.7 2.4E+02 0.0051 23.7 5.9 16 133-148 77-92 (208)
325 PF05164 ZapA: Cell division p 24.7 2.3E+02 0.005 19.2 6.2 21 71-91 20-40 (89)
326 PF05837 CENP-H: Centromere pr 24.6 2.9E+02 0.0063 20.3 6.8 22 131-152 53-74 (106)
327 COG0165 ArgH Argininosuccinate 24.5 5.2E+02 0.011 24.4 8.5 60 54-116 40-100 (459)
328 PF04837 MbeB_N: MbeB-like, N- 24.5 1.9E+02 0.0041 19.2 4.2 25 55-81 6-30 (52)
329 PRK14147 heat shock protein Gr 24.3 2.5E+02 0.0055 22.6 5.8 21 130-150 40-60 (172)
330 PF02615 Ldh_2: Malate/L-lacta 24.3 92 0.002 27.7 3.5 25 56-80 12-36 (335)
331 PF06305 DUF1049: Protein of u 24.3 65 0.0014 21.1 2.0 9 132-140 58-66 (68)
332 PF10211 Ax_dynein_light: Axon 24.3 3.9E+02 0.0084 21.7 11.2 6 62-67 53-58 (189)
333 KOG4572 Predicted DNA-binding 24.3 4.7E+02 0.01 27.2 8.5 26 94-119 955-980 (1424)
334 PRK13729 conjugal transfer pil 24.2 2.9E+02 0.0062 26.2 6.8 14 106-119 75-88 (475)
335 TIGR03175 AllD ureidoglycolate 23.9 98 0.0021 27.7 3.7 25 56-80 12-36 (349)
336 TIGR01834 PHA_synth_III_E poly 23.7 5.4E+02 0.012 23.1 10.0 25 71-95 196-220 (320)
337 PRK14475 F0F1 ATP synthase sub 23.7 3.6E+02 0.0078 21.0 9.2 11 104-114 66-76 (167)
338 PF08581 Tup_N: Tup N-terminal 23.5 2.8E+02 0.006 19.7 9.5 34 122-155 39-72 (79)
339 KOG3612 PHD Zn-finger protein 23.5 2E+02 0.0044 27.8 5.7 60 101-160 431-491 (588)
340 PF07524 Bromo_TP: Bromodomain 23.5 2.2E+02 0.0048 19.3 4.7 38 54-92 10-47 (77)
341 cd04749 Commd1_MURR1 COMM_Doma 23.5 1.3E+02 0.0028 24.6 4.0 31 49-79 54-89 (174)
342 KOG4196 bZIP transcription fac 23.5 2.9E+02 0.0063 21.8 5.7 21 125-145 98-118 (135)
343 PRK09413 IS2 repressor TnpA; R 23.4 1.6E+02 0.0035 21.8 4.2 36 121-156 77-112 (121)
344 PRK15030 multidrug efflux syst 23.3 5.1E+02 0.011 22.9 8.1 17 46-62 91-107 (397)
345 PF09727 CortBP2: Cortactin-bi 23.2 3.8E+02 0.0082 22.3 6.7 27 128-154 154-180 (192)
346 PF14361 RsbRD_N: RsbT co-anta 23.2 1.9E+02 0.0042 20.7 4.5 30 56-85 73-102 (105)
347 PF05461 ApoL: Apolipoprotein 23.1 5.3E+02 0.011 22.8 8.2 63 52-117 13-75 (313)
348 PF03961 DUF342: Protein of un 23.1 5E+02 0.011 23.6 8.1 20 126-145 386-405 (451)
349 PLN00105 malate/L-lactate dehy 23.1 1E+02 0.0023 27.3 3.6 24 57-80 6-29 (330)
350 cd07307 BAR The Bin/Amphiphysi 22.9 3.1E+02 0.0068 20.1 10.8 36 123-158 129-164 (194)
351 PRK14155 heat shock protein Gr 22.8 2.4E+02 0.0053 23.5 5.6 17 133-149 38-54 (208)
352 PRK11637 AmiB activator; Provi 22.8 5.6E+02 0.012 23.0 12.1 8 145-152 245-252 (428)
353 cd04770 HTH_HMRTR Helix-Turn-H 22.8 3.1E+02 0.0067 20.0 8.4 27 50-76 43-69 (123)
354 PRK14163 heat shock protein Gr 22.7 3E+02 0.0065 23.2 6.1 20 131-150 63-82 (214)
355 PRK09578 periplasmic multidrug 22.6 4.3E+02 0.0093 23.1 7.4 16 46-61 89-104 (385)
356 PF05461 ApoL: Apolipoprotein 22.6 3.5E+02 0.0077 23.8 6.8 48 106-153 35-82 (313)
357 PF07544 Med9: RNA polymerase 22.6 2.8E+02 0.0061 19.5 6.8 23 97-119 25-47 (83)
358 PF12709 Kinetocho_Slk19: Cent 22.6 3.2E+02 0.0069 20.0 9.9 40 109-148 36-75 (87)
359 PF07888 CALCOCO1: Calcium bin 22.5 7.1E+02 0.015 24.0 10.8 9 109-117 373-381 (546)
360 KOG4348 Adaptor protein CMS/SE 22.5 3.3E+02 0.0071 26.1 6.8 12 105-116 592-603 (627)
361 PF09032 Siah-Interact_N: Siah 22.4 3E+02 0.0065 19.7 5.4 41 103-143 6-47 (79)
362 KOG0999 Microtubule-associated 22.2 7.7E+02 0.017 24.4 9.4 27 123-149 195-221 (772)
363 PF14389 Lzipper-MIP1: Leucine 22.2 1.4E+02 0.0031 21.3 3.6 20 131-150 10-29 (88)
364 TIGR01242 26Sp45 26S proteasom 22.1 1.8E+02 0.0039 25.4 4.9 18 128-145 19-36 (364)
365 PF03273 Baculo_gp64: Baculovi 22.1 2.5E+02 0.0054 26.7 5.9 61 89-150 278-338 (498)
366 PF10805 DUF2730: Protein of u 22.1 3.3E+02 0.0071 20.0 6.2 7 106-112 34-40 (106)
367 PF10025 DUF2267: Uncharacteri 22.1 1.4E+02 0.003 22.2 3.7 44 51-102 69-114 (125)
368 PRK07353 F0F1 ATP synthase sub 22.0 3.4E+02 0.0073 20.2 9.2 10 106-115 63-72 (140)
369 cd04763 HTH_MlrA-like Helix-Tu 21.9 1.1E+02 0.0024 20.0 2.8 24 50-73 43-66 (68)
370 PRK12284 tryptophanyl-tRNA syn 21.8 3.9E+02 0.0085 24.9 7.2 110 41-153 204-315 (431)
371 COG2825 HlpA Outer membrane pr 21.7 4.2E+02 0.0092 21.2 8.1 12 49-60 28-39 (170)
372 TIGR02744 TrbI_Ftype type-F co 21.7 2.7E+02 0.0059 21.2 5.2 41 47-87 33-77 (112)
373 PRK14146 heat shock protein Gr 21.7 3.1E+02 0.0066 23.0 6.0 29 125-153 71-99 (215)
374 PF06548 Kinesin-related: Kine 21.6 1.5E+02 0.0031 28.1 4.3 32 122-153 448-479 (488)
375 KOG4673 Transcription factor T 21.5 3.1E+02 0.0067 27.7 6.6 38 107-144 558-595 (961)
376 PHA03161 hypothetical protein; 21.5 4.4E+02 0.0094 21.2 8.3 49 106-155 67-115 (150)
377 COG0576 GrpE Molecular chapero 21.5 3.9E+02 0.0085 21.8 6.5 27 127-153 55-81 (193)
378 PF04102 SlyX: SlyX; InterPro 21.4 2.7E+02 0.0059 18.8 6.1 22 126-147 29-50 (69)
379 KOG2391 Vacuolar sorting prote 21.3 4.9E+02 0.011 23.8 7.5 15 144-158 264-278 (365)
380 PF06120 Phage_HK97_TLTM: Tail 21.2 5.8E+02 0.013 22.6 8.4 27 93-119 74-100 (301)
381 COG2919 Septum formation initi 21.2 2.6E+02 0.0056 20.9 5.0 11 145-155 76-86 (117)
382 CHL00019 atpF ATP synthase CF0 21.1 4.2E+02 0.0092 20.9 9.2 9 59-67 40-48 (184)
383 cd04768 HTH_BmrR-like Helix-Tu 21.0 1.9E+02 0.0042 20.5 4.1 26 50-75 43-68 (96)
384 PF10304 DUF2411: Domain of un 21.0 75 0.0016 19.2 1.7 28 50-77 6-33 (36)
385 cd01595 Adenylsuccinate_lyase_ 21.0 5.9E+02 0.013 22.6 9.4 56 55-111 20-77 (381)
386 COG0789 SoxR Predicted transcr 21.0 3.2E+02 0.007 19.5 8.2 26 51-76 44-69 (124)
387 PF09726 Macoilin: Transmembra 20.8 4.2E+02 0.0091 26.1 7.5 43 106-149 459-501 (697)
388 PF14916 CCDC92: Coiled-coil d 20.8 2.6E+02 0.0056 19.1 4.4 12 133-144 25-36 (60)
389 PRK14156 heat shock protein Gr 20.7 3.4E+02 0.0073 22.1 5.9 23 129-151 48-70 (177)
390 PF11855 DUF3375: Protein of u 20.6 6.8E+02 0.015 23.1 9.6 93 49-151 101-214 (478)
391 PF04799 Fzo_mitofusin: fzo-li 20.4 1.4E+02 0.0031 24.4 3.6 16 127-142 125-140 (171)
392 PRK10098 putative dehydrogenas 20.4 1.3E+02 0.0028 27.0 3.7 32 49-80 7-40 (350)
393 PRK14127 cell division protein 20.4 2.9E+02 0.0064 20.8 5.1 17 63-79 21-37 (109)
394 smart00183 NAT_PEP Natriuretic 20.3 32 0.00069 19.9 -0.1 14 5-18 11-24 (26)
395 PRK14159 heat shock protein Gr 20.3 3.4E+02 0.0074 22.0 5.8 25 128-152 43-67 (176)
396 PF10473 CENP-F_leu_zip: Leuci 20.3 4.3E+02 0.0094 20.7 9.0 24 122-145 73-96 (140)
397 COG5509 Uncharacterized small 20.3 1.1E+02 0.0025 21.2 2.6 17 124-140 34-50 (65)
398 KOG3119 Basic region leucine z 20.1 1.9E+02 0.0041 24.8 4.5 20 125-144 225-244 (269)
399 KOG1936 Histidyl-tRNA syntheta 20.1 3.3E+02 0.0071 26.0 6.3 107 59-165 224-331 (518)
400 PRK14144 heat shock protein Gr 20.0 3.8E+02 0.0083 22.3 6.2 27 126-152 63-89 (199)
401 PF03954 Lectin_N: Hepatic lec 20.0 3.6E+02 0.0078 21.4 5.7 50 105-155 67-120 (138)
402 PRK11519 tyrosine kinase; Prov 20.0 8.1E+02 0.017 23.8 9.9 19 65-83 237-255 (719)
No 1
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=265.39 Aligned_cols=135 Identities=50% Similarity=0.667 Sum_probs=129.9
Q ss_pred CCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 031121 30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL 109 (165)
Q Consensus 30 ~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~ 109 (165)
.+-+++++++.+.. +.+.++||||++|+.||++||+..|||+|+.+|+++++++++.+++++|||++++...|+|+++|
T Consensus 25 ~~~hrr~~~~~~~~-~~r~~~~dt~alvr~LE~~Gf~~kQAETIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f 103 (220)
T KOG3156|consen 25 TQFHRRQSSQLSGF-GRRKFPFDTHALVRSLEAAGFDSKQAETITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDF 103 (220)
T ss_pred cccceehhhhcCcc-cccccchhHHHHHHHHHHcCCChhhHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777887777 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccCC
Q 031121 110 SKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165 (165)
Q Consensus 110 a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDlNLEKg 165 (165)
+++|+||.+++++||++||+|+|+|++|||++|++||+||++++|++|||||||||
T Consensus 104 ~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkg 159 (220)
T KOG3156|consen 104 AKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKG 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhc
Confidence 99999999999999999999999999999999999999999999999999999998
No 2
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=100.00 E-value=3.3e-36 Score=241.41 Aligned_cols=116 Identities=47% Similarity=0.710 Sum_probs=115.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQR 129 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~ 129 (165)
|||||+||++|+++|||++|||+||.+++++++++++.+++++|||+|+++..|+++++|++||+||+.+++++|+.+++
T Consensus 1 hFDT~~~v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~ 80 (177)
T PF07798_consen 1 HFDTHKFVKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRS 80 (177)
T ss_pred CCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhcccccCC
Q 031121 130 ETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~kl~a~vrLDlNLEKg 165 (165)
++++|++|+++|+++|++||.++++++|||||+|||
T Consensus 81 ~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~ 116 (177)
T PF07798_consen 81 ENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKG 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999996
No 3
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.25 Score=37.62 Aligned_cols=79 Identities=13% Similarity=0.271 Sum_probs=58.8
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 031121 55 QLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEK 133 (165)
Q Consensus 55 ~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ek 133 (165)
++|..|=+.| ++.++|..++.-+..-+. .......-.+...|..+=++....++++...++.+.+.
T Consensus 28 klvDelVkkGeln~eEak~~vddl~~q~k-------------~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~ 94 (108)
T COG3937 28 KLVDELVKKGELNAEEAKRFVDDLLRQAK-------------EAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDA 94 (108)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH-------------HHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHH
Confidence 6788888888 999999888765433222 11122333456677777788888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 031121 134 LRSDIEKMRSELR 146 (165)
Q Consensus 134 L~~ElekLkq~Lr 146 (165)
|+.++.+|++++.
T Consensus 95 Lerqv~~Lenk~k 107 (108)
T COG3937 95 LERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 4
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=95.23 E-value=0.41 Score=36.36 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=65.9
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 031121 54 LQLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGE--MQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRE 130 (165)
Q Consensus 54 ~~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~d--le~~~~~qkad~a~LR~Em~~~eksefa~Lr~e 130 (165)
-+|+..|-+.| .+++++..++.-+.+-+.+.+.....+...+++ ..+++..+...+..+=..|-...+.|+..|+..
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~R 104 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAK 104 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 37888898889 999999999888777777665544444444332 234555667778888888888888888888888
Q ss_pred HHHHHHHHHHHH
Q 031121 131 TEKLRSDIEKMR 142 (165)
Q Consensus 131 ~ekL~~ElekLk 142 (165)
++.|...+++|+
T Consensus 105 I~~Le~~l~~l~ 116 (118)
T TIGR01837 105 IEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 888887777765
No 5
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.62 E-value=0.14 Score=33.09 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
...|+.-||+.-..+ ++++..|..|++.|+.++..|+..|.
T Consensus 3 lE~Dy~~LK~~yd~L-k~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSL-KAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777776555 57778888888888888888877663
No 6
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=92.98 E-value=0.58 Score=41.84 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=74.5
Q ss_pred eeccccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHH----HHHhhHHHHhhhhh
Q 031121 18 VTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITE----VLNDSLENVAHTFV 93 (165)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~----vl~~~le~~~~~lv 93 (165)
...|-+++++++--..|..++. +-.++||+-.=.-.+.=.||++.+|.-|+.++-+ ++|.--+.+..|.+
T Consensus 108 ~d~f~gig~~~~iEaflqYy~~------~VkVnfD~vSgI~~v~V~aF~p~eaq~Iaqailkqse~lIN~Ls~rAr~dt~ 181 (372)
T COG3524 108 FDRFNGIGDRSEIEAFLQYYRD------KVKVNFDSVSGISTVNVTAFDPKEAQKIAQAILKQSEKLINQLSERARRDTV 181 (372)
T ss_pred ccccccCCCCchHHHHHHHHHH------hheeecccccceeEEEEeecChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444443333333322 3468999998888899999999999999988765 34433333333333
Q ss_pred hhhHHHHH--------------HHH--------------HHHHHHHHHHHHHhhhhhhhhhhHHHH-------HHHHHHH
Q 031121 94 SKGEMQKT--------------EMI--------------QEANLSKFKSEVQSSQEHHFSMLQRET-------EKLRSDI 138 (165)
Q Consensus 94 TK~dle~~--------------~~~--------------qkad~a~LR~Em~~~eksefa~Lr~e~-------ekL~~El 138 (165)
-=++.+=. .|+ +..-++.|-.|+...+ .+...+++-. --|++++
T Consensus 182 r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iq-aqL~tvks~m~~~nPqi~~Lkari 260 (372)
T COG3524 182 RFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQ-AQLDTVKSVMNPENPQIPGLKARI 260 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCcchhHHHHH
Confidence 22221111 111 1122333333333221 2333333332 2477788
Q ss_pred HHHHHHHHHHHHhhccchhh
Q 031121 139 EKMRSELRYEIDKVTAGQRL 158 (165)
Q Consensus 139 ekLkq~LreEI~kl~a~vrL 158 (165)
+.|+++|-.|..++.++-.-
T Consensus 261 eSlrkql~qe~q~isag~~~ 280 (372)
T COG3524 261 ESLRKQLLQEKQAISAGGSS 280 (372)
T ss_pred HHHHHHHHHHHHHhcCCCCc
Confidence 88888888898888887653
No 7
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.98 E-value=1 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 031121 138 IEKMRSELRYEIDKVT 153 (165)
Q Consensus 138 lekLkq~LreEI~kl~ 153 (165)
+..++.++..||..++
T Consensus 129 i~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 129 IQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333434443333
No 8
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.45 E-value=3.8 Score=30.48 Aligned_cols=59 Identities=17% Similarity=0.362 Sum_probs=44.6
Q ss_pred HhhhhhhhhHHHHHHHHH---HHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 88 VAHTFVSKGEMQKTEMIQ---EANLSKFKSEVQSS-QEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 88 ~~~~lvTK~dle~~~~~q---kad~a~LR~Em~~~-eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+.+..|+|++++.+.-.. ...++.+-+++..+ .+.+++.|+-+.+.++.++..|+.+++
T Consensus 27 l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 27 LRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 446789999988764433 55677777777776 467788888888888888888888774
No 9
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.67 E-value=6.2 Score=31.33 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQS--SQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~--~eksefa~Lr~e~ekL~~ElekLk 142 (165)
+|+||=.+ +..|.+-.......+.+++.+|. ++|+..+.. -+...+.+|..|+..|+.++..++
T Consensus 44 LT~EQQa~-~q~I~~~f~~~t~~LRqqL~aKr-------------~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 44 LTTEQQAA-WQKIHNDFYAQTSALRQQLVSKR-------------YEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777443 33333333333444444444443 233333322 233335666777778888888877
Q ss_pred HHHHHHHHh
Q 031121 143 SELRYEIDK 151 (165)
Q Consensus 143 q~LreEI~k 151 (165)
-.+.-|+.|
T Consensus 110 ~~~~~~~~k 118 (143)
T PRK11546 110 VKRDIAMAE 118 (143)
T ss_pred HHHHHHHHH
Confidence 777777776
No 10
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.79 E-value=2.6 Score=28.48 Aligned_cols=36 Identities=14% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 111 KFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 111 ~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+|-+++..++ +.+..+|.|++.++.+++++++.+++
T Consensus 4 elEn~~~~~~-~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 4 ELENELPRIE-SSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554443 44788999999999999999998865
No 11
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=86.57 E-value=2.2 Score=30.28 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.8
Q ss_pred eccHHHHHHHHhh-CCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEA-QGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~-~Gft~eQAEai~~ 75 (165)
.+..+.+++.|.. .|||.+....++.
T Consensus 43 dv~~l~~i~~L~~d~g~~l~~i~~~l~ 69 (91)
T cd04766 43 DIERLRRIQRLTQELGVNLAGVKRILE 69 (91)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567789999988 9999988766654
No 12
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=86.25 E-value=9 Score=29.28 Aligned_cols=64 Identities=20% Similarity=0.371 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
||.++|.++.-.++.++..- ...++++.++..+++.....- +...++.+++.+.++
T Consensus 3 FTl~EA~~lLP~l~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~ 58 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEI------------------RELKAELEELEERLQELEDSL------EVNGLEAELEELEAR 58 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhccchh------hHHhHHHHHHHHHHH
Confidence 89999999999988887552 233455555555554432221 444555666666666
Q ss_pred HHHHHHhh
Q 031121 145 LRYEIDKV 152 (165)
Q Consensus 145 LreEI~kl 152 (165)
+++-|+.+
T Consensus 59 ~~~~i~~i 66 (120)
T PF09969_consen 59 LRELIDEI 66 (120)
T ss_pred HHHHHHHH
Confidence 65555544
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.23 E-value=4.9 Score=33.46 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHhhccchhhc
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL---RYEIDKVTAGQRLD 159 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L---reEI~kl~a~vrLD 159 (165)
.+++...+.. .+..+..|++++.+|+.+++.+++++ +.+.+.++.+++++
T Consensus 120 ~~~l~~~~~~-~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 120 TAEMQQKVAQ-SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333 23445667888888888888777774 44556665555443
No 14
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.29 E-value=9.3 Score=33.69 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhhhhhHHHHHHHHHHHHHHHHH
Q 031121 78 TEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQE-------------HHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 78 ~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~ek-------------sefa~Lr~e~ekL~~ElekLkq~ 144 (165)
++-+.+--+...+.||+=++|+|....+.-.+.-||..|..++. .++..++.....|+.+++.|+..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777889999999987544443333344444443332 23455555555555555555555
Q ss_pred HH
Q 031121 145 LR 146 (165)
Q Consensus 145 Lr 146 (165)
|+
T Consensus 163 L~ 164 (302)
T PF09738_consen 163 LK 164 (302)
T ss_pred HH
Confidence 53
No 15
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=84.51 E-value=5.1 Score=37.08 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=30.6
Q ss_pred eeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 49 FLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 49 ~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+.||+..=+-.|+-.+|+++.|..|.++|-+.-+.-++
T Consensus 196 V~~D~~sGIi~l~V~AF~PedA~~ia~aLL~~sE~~VN 233 (434)
T PRK15178 196 VAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVN 233 (434)
T ss_pred EeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888999999999999999998775444333
No 16
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=83.85 E-value=4.4 Score=32.15 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 99 QKTEMIQEANLSKFKSEVQS-SQEHHFS---MLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~~-~eksefa---~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
....-+.+.++.++|.|+.. .-..||+ .++...+++..|++++++.+..+-.+.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445668899999999976 3445565 677777888888888777766554433
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.79 E-value=11 Score=28.25 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 103 MIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 103 ~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
-..-.++++||..| ..|-.||..|+.|-+.|+.+|.+.-.
T Consensus 18 ~~l~~~~~~LK~~~--------~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQL--------QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566666666 45566888888888888888766543
No 18
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.62 E-value=22 Score=27.35 Aligned_cols=49 Identities=6% Similarity=0.211 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 67 SKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSS 119 (165)
Q Consensus 67 ~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~ 119 (165)
..-...|+.+|-+++.. ...++-.++++........+++..|...+.-+
T Consensus 30 ~~~~~~vin~i~~Ll~~----~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL 78 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQ----RDRDMEQREDLSDKLRRLRSDIERLQNDVERL 78 (151)
T ss_pred cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344556666555543 23566667766665555555555555544433
No 19
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.42 E-value=5.3 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH--HHHHHHHh
Q 031121 122 HHFSMLQRETEKLRSDIEKMRS--ELRYEIDK 151 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq--~LreEI~k 151 (165)
.+.+.++.++++|+.|++.|+. ..-+|+.+
T Consensus 41 ~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 41 QTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 4446677788888888888876 34444443
No 20
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=80.76 E-value=18 Score=29.41 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=18.5
Q ss_pred eccHHHHHHHHhhCCCChHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAE 71 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAE 71 (165)
..+-+.|++.|...|||-++-.
T Consensus 42 dl~~L~~I~~l~~~Gm~i~~i~ 63 (175)
T PRK13182 42 DLQLLEYVKSQIEEGQNMQDTQ 63 (175)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 3578899999999999988753
No 21
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=80.09 E-value=17 Score=25.71 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.++.+.+.=+.|....|.||..++....+++..++.|+.+|.
T Consensus 33 ~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~ 74 (79)
T PF04380_consen 33 IRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLA 74 (79)
T ss_pred HHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445556667777777788888888888887764
No 22
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=79.95 E-value=19 Score=30.64 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=29.7
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc
Q 031121 112 FKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLN 161 (165)
Q Consensus 112 LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDlN 161 (165)
.+.++..+++.=-+..++|...|++|.|||+. ||.+++++.|-+++
T Consensus 99 Q~~~f~kiRsel~S~e~sEF~~lr~e~Eklkn----dlEk~ks~lr~ei~ 144 (220)
T KOG3156|consen 99 QKVDFAKIRSELVSIERSEFANLRAENEKLKN----DLEKLKSSLRHEIS 144 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44444444444444555566677888777665 57888888887765
No 23
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=78.54 E-value=11 Score=31.00 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 95 KGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 95 K~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
|.++++++.-+...=+-+-++|-..+|.|...|++-.+.++.|+..|+++|-|-...++
T Consensus 118 R~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 118 REQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566777888889999999999999999999999999988776654
No 24
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.71 E-value=5.1 Score=25.70 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=13.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
|+.+..|+++++.|..|.+.|+..+
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666655554443
No 25
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=77.57 E-value=37 Score=32.29 Aligned_cols=94 Identities=14% Similarity=0.256 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHH----------HHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 031121 66 PSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQE----------ANLSKFKSEVQSSQEHHFSMLQRETEKLR 135 (165)
Q Consensus 66 t~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qk----------ad~a~LR~Em~~~eksefa~Lr~e~ekL~ 135 (165)
|.+.++.+=..+.+. ..-....+++|-+|.+++...-+.+ .+|.+.+.|+..+ +.++.+.+.....++
T Consensus 162 T~~~~~~~~~~~k~~-~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~l-k~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 162 TVETAEEIEKSLKAM-QQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKL-KKEGKADKQKIKSAK 239 (555)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334444443333332 2223344556666666554322211 2333444444333 233444444455555
Q ss_pred HHHHHHHHHHHHHHHhhccchhhccc
Q 031121 136 SDIEKMRSELRYEIDKVTAGQRLDLN 161 (165)
Q Consensus 136 ~ElekLkq~LreEI~kl~a~vrLDlN 161 (165)
+|++..+..++.++..+++-.+-|++
T Consensus 240 ~~l~~~~~~~~~~~~~lk~ap~~D~~ 265 (555)
T TIGR03545 240 NDLQNDKKQLKADLAELKKAPQNDLK 265 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhccHhHHH
Confidence 56666666666666666555555543
No 26
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=76.57 E-value=25 Score=27.90 Aligned_cols=55 Identities=9% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 106 EANLSKFKSEVQSSQE--HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 106 kad~a~LR~Em~~~ek--sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+.++...-.+|..+.+ .+...|+.+++.|+.+.++.++....++..+.=+.-++.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~ 89 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKS 89 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666 677788888888888888777777777777665554443
No 27
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=76.33 E-value=14 Score=34.09 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=20.9
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 116 VQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 116 m~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
|..+.+.+...|+.|.+.++.+++.++..+
T Consensus 399 L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l 428 (445)
T cd00187 399 LRRLTKLEREKLLKELKELEAEIEDLEKIL 428 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666777777777777777777766
No 28
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=75.19 E-value=14 Score=23.43 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 031121 108 NLSKFKSEVQ 117 (165)
Q Consensus 108 d~a~LR~Em~ 117 (165)
|+..+|.||.
T Consensus 4 dle~~KqEIL 13 (40)
T PF08776_consen 4 DLERLKQEIL 13 (40)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555666653
No 29
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=73.63 E-value=41 Score=26.21 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 031121 102 EMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 102 ~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq 143 (165)
+-.+...++..=.-|-+-.+.|+..|...++.|..+|++|..
T Consensus 89 E~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 89 EQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444445555677777777777777777777654
No 30
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=72.51 E-value=28 Score=26.40 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 99 QKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
++..-..-..+++||.+|. .|=.||..|+.|-+.||.+|.+
T Consensus 14 e~~l~~l~~el~~LK~~~~--------el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLA--------ELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566777777764 4455677777777777777765
No 31
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.43 E-value=22 Score=29.72 Aligned_cols=29 Identities=31% Similarity=0.593 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
.|.-.+..+..+++.|||.++.++++=-+
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999888765333
No 32
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.05 E-value=4.4 Score=36.71 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~ 144 (165)
+.|+.|++.|++++++|++.
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENE 61 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433
No 33
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=71.84 E-value=39 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.4
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.++.+.+++.|...|||-++...+...
T Consensus 41 ~l~~l~~I~~lr~~G~~L~~I~~~l~~ 67 (118)
T cd04776 41 DRARLKLILRGKRLGFSLEEIRELLDL 67 (118)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 578889999999999999887666543
No 34
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=70.23 E-value=71 Score=27.75 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=30.8
Q ss_pred hCCCChHHHHHHHHHHHHHHHhhHH-----------HHhhhhhhhhHHHHHHH
Q 031121 62 AQGVPSKQAEAITAAITEVLNDSLE-----------NVAHTFVSKGEMQKTEM 103 (165)
Q Consensus 62 ~~Gft~eQAEai~~al~~vl~~~le-----------~~~~~lvTK~dle~~~~ 103 (165)
..|++..|+|.+++.+..++.++-- .-..+-+||.+++-.+-
T Consensus 11 ~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~ 63 (257)
T PRK14074 11 QQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAE 63 (257)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHH
Confidence 5689999999999999998877532 12345678887765443
No 35
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=69.91 E-value=45 Score=29.48 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---------HHHHHHHHH--HHHHHHHHHhhccchh
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETE---------KLRSDIEKM--RSELRYEIDKVTAGQR 157 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~e---------kL~~ElekL--kq~LreEI~kl~a~vr 157 (165)
..|.++...--........+++-+-..-+..++.+.+... +|..|+.-+ |..++|||+++.+.++
T Consensus 154 ~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K~DI~EEldRL~sHv~ 229 (290)
T COG1561 154 ALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQKADIAEELDRLKSHVK 229 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344443333333444455555544444444554444443 444444443 4458899999988775
No 36
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.74 E-value=16 Score=34.30 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 102 EMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 102 ~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.-+++..|++||+|++.+.+ .-..+.+.++.+..|+..|++++
T Consensus 78 asELEKqLaaLrqElq~~sa-q~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNK-QRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888874432 23355666667777777777776
No 37
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=69.60 E-value=19 Score=27.20 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=37.2
Q ss_pred CCcceeccHHH----HHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhh
Q 031121 45 GKRAFLVDTLQ----LVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAH 90 (165)
Q Consensus 45 ~~~~~~FDT~~----fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~ 90 (165)
.+....||--+ |++.+-+.+.|++|.++.+......++.++.....
T Consensus 30 ~p~iV~~dl~~tv~~f~~~~a~~~lt~~q~~a~t~~F~~aL~~~L~~~~~ 79 (111)
T PF09677_consen 30 QPRIVTFDLKGTVDEFVQQLARSSLTPEQVEALTQRFMQALEASLAEYQA 79 (111)
T ss_pred CCceEEeeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999764 66677888999999999999999999888875433
No 38
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=69.44 E-value=44 Score=32.84 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHHHhhC-CCChHHHHHHHH
Q 031121 55 QLVRGLEAQ-GVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~-Gft~eQAEai~~ 75 (165)
...+.|.+. ||++.||++|.+
T Consensus 397 ~~~~~l~~~f~~~~~q~~~il~ 418 (738)
T TIGR01061 397 DAKENLIDNFKFTENQAEAIVS 418 (738)
T ss_pred HHHHHHHHhcCCCHHHHHHHHh
Confidence 355555554 677777777655
No 39
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.07 E-value=66 Score=26.38 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~ 75 (165)
+-...||..||+..--..-..
T Consensus 76 ~tl~~LE~~GFnV~~l~~RL~ 96 (190)
T PF05266_consen 76 KTLSELEEHGFNVKFLRSRLN 96 (190)
T ss_pred HHHHHHHHcCCccHHHHHHHH
Confidence 456778899998765444333
No 40
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=67.15 E-value=71 Score=28.56 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHHHHhh---CCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH-------HHHHHHHHHHHHHHHHH----Hhhhh
Q 031121 56 LVRGLEA---QGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQ-------KTEMIQEANLSKFKSEV----QSSQE 121 (165)
Q Consensus 56 fVk~Le~---~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle-------~~~~~qkad~a~LR~Em----~~~ek 121 (165)
|++.|.. .|=+..-+.++.....+..++. +..++.-.+.. +..+.++.++.++-.+. -.-.|
T Consensus 213 ~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~----~~e~~~S~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTR 288 (320)
T TIGR01834 213 LMSDLLARAKSGKPVKTAKALYDLWVIAAEEA----YAEVFASEENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTR 288 (320)
T ss_pred HHHHHHhccccCCCchhHHHHHHHHHHHHHHH----HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4444542 3444444555555544444443 33333333322 23344444444443332 22256
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+|+..+...+..|++++..|+..|++
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766543
No 41
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=67.06 E-value=41 Score=32.70 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHH
Q 031121 64 GVPSKQAEAITAA 76 (165)
Q Consensus 64 Gft~eQAEai~~a 76 (165)
+||++||++|.+.
T Consensus 384 ~~t~~qa~ail~m 396 (635)
T PRK09631 384 DVTEEDIENLLKI 396 (635)
T ss_pred CCCHHHHHHHHHh
Confidence 7888888888774
No 42
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.97 E-value=1e+02 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhc
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLD 159 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLD 159 (165)
+...|..+.-.|+..+|.|+.+.++-..|+..-.-+|
T Consensus 254 ~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~ 290 (365)
T KOG2391|consen 254 MKETLEQQLQSLQKNIDILKSKVREALEKAENLEALD 290 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCC
Confidence 3455666777888889999999988777776644344
No 43
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.76 E-value=15 Score=36.59 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=34.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccccc
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLE 163 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDlNLE 163 (165)
--.+.-||.||..||+.+-.|+|+|||.=..-+..--+|.|+|
T Consensus 386 ALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~E 428 (861)
T PF15254_consen 386 ALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLE 428 (861)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchh
Confidence 3457789999999999999999999995554445545788876
No 44
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.57 E-value=26 Score=23.39 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKM 141 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekL 141 (165)
.+.++.++++|+.+++.|
T Consensus 33 i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 33 IEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666777777777777
No 45
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=66.52 E-value=28 Score=26.37 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq 143 (165)
+.|+-||+.|+.-++++.+
T Consensus 39 ~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 39 TALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5677788888888887744
No 46
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=65.90 E-value=14 Score=25.68 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCCcceeccHHHHHHHHhhCC-----CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHH
Q 031121 44 NGKRAFLVDTLQLVRGLEAQG-----VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMI 104 (165)
Q Consensus 44 ~~~~~~~FDT~~fVk~Le~~G-----ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~ 104 (165)
..++..+||-.++.+.|..++ ++.++++.|+.-+..-+.+. ..+-+|-+++..+.+.
T Consensus 6 rdG~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~----~~~~is~~eI~~~v~~ 67 (90)
T PF03477_consen 6 RDGRVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDS----GKEEISTEEIQDIVEN 67 (90)
T ss_dssp SSSSEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST--------TEEHHHHHHHHHH
T ss_pred CCCcEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhc----cCCCeeHHHHHHHHHH
Confidence 345688999999999999999 88899888887755544332 2236777777665443
No 47
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=65.62 E-value=43 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHhhHHHHhhhhhhhhHHHH
Q 031121 78 TEVLNDSLENVAHTFVSKGEMQK 100 (165)
Q Consensus 78 ~~vl~~~le~~~~~lvTK~dle~ 100 (165)
+..+...+.. -|+|||++.+-
T Consensus 34 r~~l~~~l~k--ldlVtREEFd~ 54 (79)
T PF04380_consen 34 RARLQSALSK--LDLVTREEFDA 54 (79)
T ss_pred HHHHHHHHHH--CCCCcHHHHHH
Confidence 3344444443 48999999764
No 48
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=63.38 E-value=40 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 91 TFVSKGEMQKTEMIQEANLSKFKSEVQSS 119 (165)
Q Consensus 91 ~lvTK~dle~~~~~qkad~a~LR~Em~~~ 119 (165)
-++.|.|+.+....+++++..+|.-|..-
T Consensus 6 ~~a~k~DI~EEl~RL~sH~~~f~~~l~~~ 34 (87)
T PF08340_consen 6 LLADKADISEELVRLKSHLKQFRELLESE 34 (87)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999888889999999999877543
No 49
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.15 E-value=72 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHH---HHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRS---ELRYEID 150 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq---~LreEI~ 150 (165)
+-.+|+...+.++.|.+.|-. +|+++|.
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 445566666666666666542 3555443
No 50
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.11 E-value=33 Score=29.21 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=20.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH---HHHhh
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRY---EIDKV 152 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lre---EI~kl 152 (165)
.|+..||-.+|.+.++|++++++-++ +|++.
T Consensus 68 ~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 68 SDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788888888776555 55543
No 51
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.95 E-value=32 Score=33.44 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
|.+.|+.+++.++.++++|+.+|.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 52
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=62.07 E-value=38 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq 143 (165)
+...++.++++|+.|+..|..
T Consensus 39 ~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 39 EIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 345667777888888777765
No 53
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.89 E-value=41 Score=25.26 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq 143 (165)
+.|+-||+.|+.-+.++.+
T Consensus 39 ~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 39 ARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777665
No 54
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=61.86 E-value=59 Score=32.19 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=12.5
Q ss_pred HHHHHhhC-CCChHHHHHHHH
Q 031121 56 LVRGLEAQ-GVPSKQAEAITA 75 (165)
Q Consensus 56 fVk~Le~~-Gft~eQAEai~~ 75 (165)
..+.|.+. ||++.||++|..
T Consensus 398 ~~~~L~~~~~~~~~qa~~il~ 418 (800)
T TIGR01063 398 AKTRLVERFSLSEIQAQAILD 418 (800)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 44555544 677777777765
No 55
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=61.34 E-value=42 Score=33.11 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhh
Q 031121 141 MRSELRYEIDKV 152 (165)
Q Consensus 141 Lkq~LreEI~kl 152 (165)
+.+-+++|+..+
T Consensus 453 ~~~~i~~el~~~ 464 (735)
T TIGR01062 453 LNQLVKKEIQAD 464 (735)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 56
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=61.14 E-value=43 Score=25.56 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.9
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+.+.|++.|...|||-++...+..
T Consensus 43 ~v~~l~~I~~lr~~GfsL~eI~~ll~ 68 (131)
T cd04786 43 TVWVLEIISSAQQAGFSLDEIRQLLP 68 (131)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 36788999999999999988777654
No 57
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.71 E-value=54 Score=22.83 Aligned_cols=43 Identities=14% Similarity=0.433 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 103 MIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 103 ~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
..+..-|-+||..+..++ .+...++...+.+..+++.|+.++.
T Consensus 29 l~~~~~IKKLr~~~~e~e-~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 29 LKLNNTIKKLRAKIKELE-KQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667778888777665 5577777778888888888877764
No 58
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=60.49 E-value=1.3e+02 Score=28.46 Aligned_cols=96 Identities=9% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHhhCCCChHHHH-HHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 031121 53 TLQLVRGLEAQGVPSKQAE-AITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131 (165)
Q Consensus 53 T~~fVk~Le~~Gft~eQAE-ai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ 131 (165)
+-+..+.|++-|++.+..- .-...+.+.+-... .+.--...+++...+++..+..|+..+...+.+=-..+.+..
T Consensus 386 e~~~~k~l~k~~l~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~ 461 (542)
T PF10079_consen 386 EPKVAKKLEKLGLSVEDVFEDGEELLKERWLEEQ----DPSEIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNE 461 (542)
T ss_pred cHHHHHHHHHcCCCHHHHhhccHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3467888889999988753 22333333221100 111223345555667788888888888888888788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031121 132 EKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 132 ekL~~ElekLkq~LreEI~kl 152 (165)
.++...++.|++++.....+-
T Consensus 462 ~~~~~ql~~Le~k~~~a~~rk 482 (542)
T PF10079_consen 462 SKILKQLDYLEKKLLKAEKRK 482 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987665543
No 59
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=60.47 E-value=43 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=10.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 120 QEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 120 eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+.|...|+.|.+.|+.+++.|+.-
T Consensus 435 t~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 435 AKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 60
>PRK11546 zraP zinc resistance protein; Provisional
Probab=60.38 E-value=77 Score=25.17 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=38.9
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 93 VSKGEMQK---TEMIQEANLSKFKSEVQSSQEHHFSMLQ-------RETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 93 vTK~dle~---~~~~qkad~a~LR~Em~~~eksefa~Lr-------~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
.|-++++. +.-.+..+.+.||.+|... +.|..+|- ..+..|..||..|+++|.++-.+....+
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aK-r~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSK-RYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 2334567778888887544 33333332 2246799999999999988766554443
No 61
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.15 E-value=1e+02 Score=26.33 Aligned_cols=64 Identities=13% Similarity=0.261 Sum_probs=45.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 90 HTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 90 ~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
++++.+-|+-++.|+...+-. .+++.....|..+.|.++.++|-..+.++.|+.+-...-+-||
T Consensus 149 k~vlK~RdqkQ~d~E~l~E~l-------~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~ 212 (240)
T cd07667 149 KNVLKKRDQVQAEYEAKLEAV-------ALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDF 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666676666666654442 3577778888999999999999999999999887654444443
No 62
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=60.08 E-value=16 Score=26.20 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+.|+.|+.+|+.+|.+|+.+|.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888877766543
No 63
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=59.68 E-value=30 Score=30.45 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHH
Q 031121 43 SNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105 (165)
Q Consensus 43 ~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~q 105 (165)
+.+.+..+|-=-=+++.|+.+|+++.-|-.|+..+.+.+... ..-.++++++++..++.
T Consensus 9 ~~~~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~----g~~~i~~~el~~~V~~~ 67 (301)
T PRK04220 9 KGKKYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKE----GIKEITKEELRRRVYYK 67 (301)
T ss_pred cCCCccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHc----CCEEeeHHHHHHHHHHH
Confidence 446677888888999999999999999999999998887765 35678888888776554
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.03 E-value=57 Score=25.51 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~L 145 (165)
|+..++.|..+++.|..+|
T Consensus 114 l~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444
No 65
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.85 E-value=89 Score=24.70 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+|+..+..=|.++ ..+...|+.|+.+++.|++-++.+..
T Consensus 74 ~Qk~eLE~~k~~L----~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 74 QQKHELEKEKAEL----QQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 36677888888888888888887754
No 66
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=57.84 E-value=57 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.++.+.++..|...|||-+++..+...
T Consensus 43 di~~l~~i~~lr~~g~~l~~i~~~~~~ 69 (103)
T cd01106 43 DLERLQQILFLKELGFSLKEIKELLKD 69 (103)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467889999999999999998887653
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.76 E-value=74 Score=32.73 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
.+..+++.-+|.|..--..+...||+||+.++..+
T Consensus 472 ~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 472 GDLEALEEMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455666666666666666667777777665544
No 68
>PHA01750 hypothetical protein
Probab=56.36 E-value=42 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 113 KSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 113 R~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
|.-+...-++|..+|+.|.+.++...|.+.+++.|
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~e 67 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEE 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333667778888888777777777777643
No 69
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.31 E-value=1.3e+02 Score=25.92 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=2.7
Q ss_pred hhhhhHH
Q 031121 92 FVSKGEM 98 (165)
Q Consensus 92 lvTK~dl 98 (165)
++++.++
T Consensus 192 ~is~~~~ 198 (423)
T TIGR01843 192 LVSRLEL 198 (423)
T ss_pred CCCHHHH
Confidence 3334433
No 70
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=55.13 E-value=26 Score=25.40 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.1
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+|++.|++. .|||.+|.-+++..+..++..+++
T Consensus 1 y~~~~Fa~~---~~fs~~q~s~~~~i~~~ll~~~i~ 33 (101)
T PF14769_consen 1 YNTFLFAKE---QGFSWEQTSAFLSILKELLEKNIE 33 (101)
T ss_pred CchhHhHhh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356666665 699999999999999999987764
No 71
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=54.63 E-value=34 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.0
Q ss_pred cHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 52 DTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 52 DT~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+...|++.+- ..|+|..+++++++++-+++.+.+.
T Consensus 3 tk~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~ 38 (96)
T TIGR00987 3 TKAEMSEYLFDELGLSKREAKELVELFFEEIRRALE 38 (96)
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4456777774 5689999999999999999877664
No 72
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=54.62 E-value=21 Score=21.64 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq 143 (165)
+-..||...|.|++-+++|++
T Consensus 9 ekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 9 EKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777777777765
No 73
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=54.52 E-value=71 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=23.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 031121 90 HTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDI 138 (165)
Q Consensus 90 ~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~El 138 (165)
..+.+..++.+..-+++..+++++.+++.. ...++.||++|+.-+
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~----~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELLKKNQQLEIL----TQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 345555555555555566666665555432 122556666665533
No 74
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=54.49 E-value=71 Score=22.21 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhhhHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ--SSQEHHFSMLQRETEK 133 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~--~~eksefa~Lr~e~ek 133 (165)
.-.....-++|++|...|-..+.+..... ....-+.+....+|+..|. ..+...+..+..+...
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~~~~~~~--------------~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~ 98 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMDEFRQEM--------------RALRQELRAARQELRALLAAPPPDEAAIEALLEEIRE 98 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34444557999999998888766654321 1111122222333333332 2344455556666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031121 134 LRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 134 L~~ElekLkq~LreEI~k 151 (165)
++.++.....+..-++.+
T Consensus 99 ~~~~l~~~~~~~~~~~~~ 116 (125)
T PF13801_consen 99 AQAELRQERLEHLLEIRA 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665555544
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.47 E-value=1.3e+02 Score=25.36 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
+..+.++|..++.+ ..++..|+..+..|...|..++..+..+.....+
T Consensus 215 ~~E~~~~r~~~~~l-~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~ 262 (312)
T PF00038_consen 215 KEELKELRRQIQSL-QAELESLRAKNASLERQLRELEQRLDEEREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHh-hhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44555556665555 3556666666666666666665555554444433
No 76
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=54.10 E-value=29 Score=24.89 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=25.7
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+++.|. ..|+|..||+.+++++-+++.+.+.
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~ 37 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLK 37 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4566664 5689999999999999998877654
No 77
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=53.91 E-value=98 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHH
Q 031121 89 AHTFVSKGEMQKTEMIQ 105 (165)
Q Consensus 89 ~~~lvTK~dle~~~~~q 105 (165)
.++.+|+.++++....+
T Consensus 145 ~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 145 AKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HCCCcCHHHHHHHHHHH
Confidence 45677777777665544
No 78
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.89 E-value=47 Score=24.65 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~k 151 (165)
+..++.++.++..+ +.+-..|+.+.++|+.+-+-+.+.-|+++.=
T Consensus 33 ~~q~~~~~~e~~~l-~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 33 NDQVAAQQQTNAKL-KARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 44445555554444 3444667777777777667777777776543
No 79
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=53.55 E-value=16 Score=25.58 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred cceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhH
Q 031121 47 RAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSL 85 (165)
Q Consensus 47 ~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~l 85 (165)
..+.|+|+..+..|-..| +++|..++..+.+.+.-++
T Consensus 11 PHFl~NtLn~I~~l~~~~--~~~~~~~i~~ls~~lRy~l 47 (82)
T PF06580_consen 11 PHFLFNTLNSISWLARID--PEKASEMILSLSDLLRYSL 47 (82)
T ss_pred hHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHh
Confidence 467899999999999888 8888888888888887755
No 80
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.53 E-value=23 Score=30.63 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKM 141 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekL 141 (165)
.+++||++|+.++.+|
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554444
No 81
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.89 E-value=48 Score=22.11 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
..++++++++..+ +.+...|+.+.++|+.+-+-++..-|+
T Consensus 24 ~ei~~l~~~i~~l-~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 24 QEIAELQKEIEEL-KKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344444444333 233445555555554455544444443
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.63 E-value=30 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=12.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq 143 (165)
|++...+|.++|.|+..+..|.+
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555444433
No 83
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=52.62 E-value=1.2e+02 Score=24.30 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cchhhcccc
Q 031121 130 ETEKLRSDIEKMRSELRYEIDKVT-------AGQRLDLNL 162 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~kl~-------a~vrLDlNL 162 (165)
+..++-...++++....+|+-++. +|++-||||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~~~~~~~~~ 150 (155)
T PRK06569 111 NIEDINLAAKQFRTNKSEAIIKLAVNIIEKIAGTKADMNL 150 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccccHHH
Confidence 344444455566666555555444 456667765
No 84
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=52.36 E-value=1.7e+02 Score=27.06 Aligned_cols=21 Identities=10% Similarity=0.382 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~ 144 (165)
+..+..+..++..+|.+|+..
T Consensus 248 le~v~kdi~~a~~~L~~m~~~ 268 (424)
T PF03915_consen 248 LETVAKDISRASKELKKMKEY 268 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 85
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=52.29 E-value=1e+02 Score=24.74 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=8.5
Q ss_pred HHHHHHhhccchhhccc
Q 031121 145 LRYEIDKVTAGQRLDLN 161 (165)
Q Consensus 145 LreEI~kl~a~vrLDlN 161 (165)
|+.+|..+++.++=|+|
T Consensus 168 L~~~I~~~~~~I~~~~~ 184 (184)
T PF05791_consen 168 LQKQIENLNEEIKKDLN 184 (184)
T ss_dssp HHHHHHHHTGGG-GG--
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 34456666666666665
No 86
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=52.17 E-value=67 Score=29.25 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=34.0
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 83 DSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQ-------------EHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 83 ~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~e-------------ksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+--+.+.+.||+-++|++..-.+.-...-||.+|...+ .+||..+++...-|++..+.|++.|+
T Consensus 123 EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788888887643333222223333332221 23555566666666666666666654
No 87
>PRK01919 tatB sec-independent translocase; Provisional
Probab=52.15 E-value=1.1e+02 Score=25.11 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.++...+.++.....+++.+.+++..+.
T Consensus 58 Elrk~~~~~e~~~~~v~~si~~~~~~~~ 85 (169)
T PRK01919 58 ELRKMKTDFESAARDVENTIHDNLSEHE 85 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444443
No 88
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=51.73 E-value=71 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred eeccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 49 FLVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 49 ~~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
...+.+.+++.|...|||-++...+...
T Consensus 43 ~~i~~l~~I~~lr~~G~sl~~i~~l~~~ 70 (108)
T cd01107 43 EQLERLNRIKYLRDLGFPLEEIKEILDA 70 (108)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3567789999999999999888776654
No 89
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=51.67 E-value=35 Score=32.06 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=46.3
Q ss_pred CCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHH
Q 031121 45 GKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105 (165)
Q Consensus 45 ~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~q 105 (165)
+++..+|-===+++.|+.+|+++..|-+|+..+..-+.. -....+|+.+|.+..|+.
T Consensus 88 ~~~~~PFSkGiLarSL~~aG~~~~~Ay~iA~~Ve~~Lr~----~~~~~Is~~eL~~~v~~~ 144 (475)
T PRK12337 88 GRGRRPFSRGVLARSLEDAGFSPREAYELASAVELRLRQ----EGVREIGAKELEKRTARE 144 (475)
T ss_pred CCCCCCcchhhHHHHHHHcCCCHHHHHHHHHHHHHHHHH----cCCcccCHHHHHHHHHHH
Confidence 556677877789999999999999999999987765543 235789999999887754
No 90
>smart00340 HALZ homeobox associated leucin zipper.
Probab=51.54 E-value=22 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq 143 (165)
+..|..||.+|+.|+..|+.
T Consensus 14 ce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 14 CESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999998875
No 91
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.30 E-value=46 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLR 135 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~ 135 (165)
..+++.++.++..+ +.+...|+.|...|.
T Consensus 30 ~~~~~~~~~~~~~l-~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 30 NNELQKLQLEIDKL-QKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 34444444444333 344444555554444
No 92
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=50.91 E-value=50 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCCccee---ccHHHHHHH-HhhCCCChHHHHHHHH
Q 031121 43 SNGKRAFL---VDTLQLVRG-LEAQGVPSKQAEAITA 75 (165)
Q Consensus 43 ~~~~~~~~---FDT~~fVk~-Le~~Gft~eQAEai~~ 75 (165)
|.+.+.+. .+-+.+++. |...|||-+++..++.
T Consensus 33 ~~g~R~Yt~~di~~l~~I~~llr~~G~~l~~i~~~l~ 69 (99)
T cd04765 33 AGGRRYYRPKDVELLLLIKHLLYEKGYTIEGAKQALK 69 (99)
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44444443 455677887 5899999988766554
No 93
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=50.90 E-value=83 Score=31.81 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.9
Q ss_pred CCChHHHHHHHH
Q 031121 64 GVPSKQAEAITA 75 (165)
Q Consensus 64 Gft~eQAEai~~ 75 (165)
+||++||++|.+
T Consensus 405 ~lte~qa~aIle 416 (869)
T PRK12758 405 EVTEDDIVRLTE 416 (869)
T ss_pred CCCHHHHHHHHH
Confidence 345555555444
No 94
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.74 E-value=82 Score=29.36 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 031121 99 QKTEMIQEANLSKFKSEVQSSQE 121 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~~~ek 121 (165)
.........++..|.++|..+..
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 95
>smart00338 BRLZ basic region leucin zipper.
Probab=50.52 E-value=68 Score=21.17 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.+..|-.++..++ .+-..|+.+.+.|..++..|++.+
T Consensus 27 ~~~~Le~~~~~L~-~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLE-AENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443332 233444445555555555555443
No 96
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=50.36 E-value=1.6e+02 Score=25.12 Aligned_cols=63 Identities=6% Similarity=0.130 Sum_probs=33.3
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 83 DSLENVAHTFVSKGEMQKTEMIQE---ANLSKFKSEVQSS----QEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 83 ~~le~~~~~lvTK~dle~~~~~qk---ad~a~LR~Em~~~----eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
..-....+..+++.++++....+. +.+...+..+..+ ...+...++.+.+..+.++++.+..|
T Consensus 132 r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 132 RQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345567788888877665543 3334444444322 12344455555555666666555554
No 97
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=50.31 E-value=1.4e+02 Score=24.51 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=26.9
Q ss_pred HHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQS--SQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 109 ~a~LR~Em~~--~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
+..+|.+|.. .+-.++-+|+..|.++..+|++.+|+|
T Consensus 137 ~~~~keqL~~~i~evq~lK~lkrkNakv~~~i~kkrqrL 175 (175)
T PF13097_consen 137 YSNFKEQLIEMIKEVQELKNLKRKNAKVISDINKKRQRL 175 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445555432 233567889999999999999999875
No 98
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=50.25 E-value=71 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=24.0
Q ss_pred eeccHHHHHHHHhhCCCChHHHHHHHHHH
Q 031121 49 FLVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (165)
Q Consensus 49 ~~FDT~~fVk~Le~~Gft~eQAEai~~al 77 (165)
-..+.++|++.|...|||-++...++.+.
T Consensus 45 ~~l~rL~~I~~lr~~G~~L~eI~~ll~~~ 73 (120)
T TIGR02054 45 ASLQRLRFVRAAFEAGIGLGELARLCRAL 73 (120)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 35788999999999999999987766543
No 99
>PRK04654 sec-independent translocase; Provisional
Probab=50.21 E-value=93 Score=26.40 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 031121 109 LSKFKSEVQ 117 (165)
Q Consensus 109 ~a~LR~Em~ 117 (165)
+.+||++|+
T Consensus 56 ~~ELrk~l~ 64 (214)
T PRK04654 56 AEELKRSLQ 64 (214)
T ss_pred HHHHHHHHH
Confidence 344554444
No 100
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=50.21 E-value=87 Score=28.57 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
++--|||+|+..+..-. ...-|.-+.++.+.+...+..+|.+|
T Consensus 120 ~dL~qaEai~~li~a~t---------~~~~~~al~~l~G~l~~~~~~~r~~l 162 (449)
T PRK05291 120 LDLTQAEAIADLIDAKT---------EAAARLALRQLQGALSKLINELREEL 162 (449)
T ss_pred cCHHHHHHHHHHHhCCC---------HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34478999888754322 22223334444455555555555554
No 101
>PRK15396 murein lipoprotein; Provisional
Probab=50.02 E-value=54 Score=23.44 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=6.1
Q ss_pred hhhhhhhHHHH
Q 031121 90 HTFVSKGEMQK 100 (165)
Q Consensus 90 ~~lvTK~dle~ 100 (165)
...+|..++++
T Consensus 19 aGCAs~~kvd~ 29 (78)
T PRK15396 19 AGCSSNAKIDQ 29 (78)
T ss_pred HHcCCchhHHH
Confidence 35666655554
No 102
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=49.68 E-value=75 Score=24.42 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 98 MQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 98 le~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+++.....-++++.||+-+. .|=.||..|+-|.++||.+|-+
T Consensus 13 le~~l~~l~~el~~lK~~l~--------~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLG--------SLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHhhHHHHHHHhCC
Confidence 34444444566777777664 3456888888888899888866
No 103
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=49.66 E-value=69 Score=20.67 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=16.8
Q ss_pred cHHHHHHHHhhCCCChHHHHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~ 74 (165)
+-+.|++.++..|||-+.-..+.
T Consensus 2 ~rL~~I~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 2 ERLQFIRRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHH
Confidence 45789999999999988765555
No 104
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.62 E-value=1.3e+02 Score=25.56 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH---HHHHHHhhccc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE---LRYEIDKVTAG 155 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~---LreEI~kl~a~ 155 (165)
..+...+++.++.+..+.++... |+++|+.++.+
T Consensus 67 ~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 67 NIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444432 55666666555
No 105
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=49.62 E-value=6.1 Score=27.94 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=11.0
Q ss_pred CCChHHHHHHHHHHHHH
Q 031121 64 GVPSKQAEAITAAITEV 80 (165)
Q Consensus 64 Gft~eQAEai~~al~~v 80 (165)
-||++||++++.+.+.+
T Consensus 7 ~ftr~qA~aV~a~y~NV 23 (70)
T PF06006_consen 7 PFTREQAEAVAAQYRNV 23 (70)
T ss_dssp ---HHHHHHHHHH-TTE
T ss_pred CccHHHHHHHHHHhcce
Confidence 39999999998886654
No 106
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.22 E-value=2.8e+02 Score=27.49 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=7.2
Q ss_pred HHHHHHHhhCCCChH
Q 031121 54 LQLVRGLEAQGVPSK 68 (165)
Q Consensus 54 ~~fVk~Le~~Gft~e 68 (165)
+..++++ |+|++
T Consensus 486 ~~iA~~~---Glp~~ 497 (771)
T TIGR01069 486 FEIAQRY---GIPHF 497 (771)
T ss_pred HHHHHHh---CcCHH
Confidence 3445555 88874
No 107
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=49.18 E-value=15 Score=32.43 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=48.0
Q ss_pred Hhhhcccceeeccc---cccccCCCCCccceecc----cccCCCCcceeccHHHHHHHHhhCC-CC------hHHHHHHH
Q 031121 9 KLVADSGVRVTKSQ---GFNLNYSNTIGYRQISQ----LVKSNGKRAFLVDTLQLVRGLEAQG-VP------SKQAEAIT 74 (165)
Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~----~~~~~~~~~~~FDT~~fVk~Le~~G-ft------~eQAEai~ 74 (165)
-||-+||||++--+ ++.++-++..+-+++.- +.+|.--.+++=-|+---+.|...+ .. .+||+.++
T Consensus 93 LIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~ 172 (299)
T COG2074 93 LIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVM 172 (299)
T ss_pred EecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHH
Confidence 47899999998444 45566666555554433 3444444455434444444444322 22 58999999
Q ss_pred HHHHHHHHhhHH
Q 031121 75 AAITEVLNDSLE 86 (165)
Q Consensus 75 ~al~~vl~~~le 86 (165)
-++..+++-+++
T Consensus 173 ~GI~~VI~RAi~ 184 (299)
T COG2074 173 VGIEAVIERAIE 184 (299)
T ss_pred HHHHHHHHHHHh
Confidence 999888877765
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=49.14 E-value=1.2e+02 Score=23.23 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQ------RETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr------~e~ekL~~ElekLkq~LreEI~kl 152 (165)
...+..|+.++..++.-.-+.|. .+.+.|+.||..||.-.+.-|+.+
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777666655555443 456779999999999888887754
No 109
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.01 E-value=1.2e+02 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.5
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.++.+.+++.|...|||-+....+..
T Consensus 42 ~l~~l~~I~~lr~~G~sL~eI~~~l~ 67 (134)
T cd04779 42 ALDRLQLIEHLKGQRLSLAEIKDQLE 67 (134)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35678999999999999987655543
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.84 E-value=1.8e+02 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=13.6
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 116 VQSSQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 116 m~~~eksefa~Lr~e~ekL~~ElekLk 142 (165)
+...++.++..+|.+...+..+|+.++
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555333
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.43 E-value=1.6e+02 Score=24.52 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSS 119 (165)
Q Consensus 106 kad~a~LR~Em~~~ 119 (165)
...+..|..++..+
T Consensus 55 ~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 55 LAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 112
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=48.21 E-value=41 Score=22.66 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHHHHH
Q 031121 55 QLVRGLEAQG-VPSKQAEAITAAITEVLN 82 (165)
Q Consensus 55 ~fVk~Le~~G-ft~eQAEai~~al~~vl~ 82 (165)
.+|.+.-++| +|.+||.+|...|..-..
T Consensus 22 ~~idk~Ve~G~iTqeqAd~ik~~id~~~~ 50 (59)
T PF10925_consen 22 QIIDKYVEAGVITQEQADAIKKHIDQRQE 50 (59)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3566677788 999999999888766543
No 113
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=48.11 E-value=1.2e+02 Score=22.92 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=22.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...|||-++...+..
T Consensus 44 ~l~~l~~I~~lr~~G~sl~eI~~~l~ 69 (131)
T TIGR02043 44 DQKRLRFILKAKELGFTLDEIKELLS 69 (131)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788999999999999988776664
No 114
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=48.06 E-value=32 Score=32.40 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 031121 108 NLSKFKSEV 116 (165)
Q Consensus 108 d~a~LR~Em 116 (165)
.|++|++||
T Consensus 32 kie~L~kql 40 (489)
T PF11853_consen 32 KIEALKKQL 40 (489)
T ss_pred HHHHHHHHH
Confidence 344444444
No 115
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=47.13 E-value=1.3e+02 Score=25.08 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQSSQ-------------EHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~~~e-------------ksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+-|+.+++.....+.....|+.||.+.+ +.|...|+.+....+..|++|...++
T Consensus 112 AQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 112 AQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777775543 34555666666666666666666654
No 116
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.35 E-value=25 Score=31.97 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 031121 106 EANLSKFKSEV 116 (165)
Q Consensus 106 kad~a~LR~Em 116 (165)
|....+||+++
T Consensus 45 KkEN~~Lk~eV 55 (420)
T PF07407_consen 45 KKENNDLKIEV 55 (420)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.13 E-value=2e+02 Score=25.04 Aligned_cols=35 Identities=14% Similarity=0.408 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq 143 (165)
.+..+|.++... +.++...+.+.+.++.+++.+++
T Consensus 210 eL~~lr~eL~~~-~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 210 ELEALRQELAEQ-KEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555433 23344444444444444444433
No 118
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.08 E-value=1.1e+02 Score=28.55 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHhhccch
Q 031121 95 KGEMQKTEMIQ---EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE----------LRYEIDKVTAGQ 156 (165)
Q Consensus 95 K~dle~~~~~q---kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~----------LreEI~kl~a~v 156 (165)
+..+......+ +..+.+.+.|+..+ +.....|+.+.++.+.++..++++ |..|+.+++..+
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L-~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSL-RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.90 E-value=1.6e+02 Score=29.55 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
++.+|+.+..++ .+-..|+..+|+|+.++++|+...
T Consensus 225 ~~s~kk~l~~~~-~~k~rl~~d~E~Lr~e~~qL~~~~ 260 (916)
T KOG0249|consen 225 LESVKKQLEEMR-HDKDKLRTDIEDLRGELDQLRRSS 260 (916)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444444332 334456666677777777766433
No 120
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=45.72 E-value=1.5e+02 Score=23.62 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
+..|+.-++|+..+..-+--.+ ...|+|.-.++.|+..|..|+..+.++
T Consensus 67 ~~~i~~k~~El~~L~~~d~~kv-~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 67 ETEISEKKKELSHLKKFDRKKV-EDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444555544433111111 245889999999999999999999844
No 121
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=45.67 E-value=44 Score=22.92 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=26.4
Q ss_pred HHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+. ..|+|..+++.+..++.+++.+.+.
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~ 37 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALK 37 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 35677774 5689999999999999998877654
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.37 E-value=1.7e+02 Score=24.03 Aligned_cols=10 Identities=10% Similarity=0.521 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 031121 107 ANLSKFKSEV 116 (165)
Q Consensus 107 ad~a~LR~Em 116 (165)
..+..||..+
T Consensus 70 ~r~~~l~~~i 79 (302)
T PF10186_consen 70 ERLERLRERI 79 (302)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 123
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=44.94 E-value=2.7e+02 Score=26.10 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=47.4
Q ss_pred HHHHHHhhCCCChH----HHHHHH-HHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 031121 55 QLVRGLEAQGVPSK----QAEAIT-AAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQR 129 (165)
Q Consensus 55 ~fVk~Le~~Gft~e----QAEai~-~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~ 129 (165)
+++......|.+.. =|+.|+ +.+...+++.+..+...++++.--++..-..+.+|.+.|.++..++...... ..
T Consensus 341 k~l~~~~~~g~s~~~~~~~a~~IA~dll~~yL~~~l~~~~~al~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~ 419 (451)
T PRK13723 341 KYLVDPQMLGVSNSLIYQLTDYIGYDILLQYIQELIQQARAMLATGNYPEAVMDHLRENLNQAQRQIAAFQSQVQVQ-QD 419 (451)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44444444455432 233332 2333345555555555555433223334445666666666665555444444 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~ 150 (165)
...-+..++..+++.+.-.+.
T Consensus 420 ~~~~i~~~~~~~eqq~~~~~s 440 (451)
T PRK13723 420 ALLVVDRQMSYMRQQLSARML 440 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444455556667777665554
No 124
>PRK14126 cell division protein ZapA; Provisional
Probab=44.91 E-value=95 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~Lre 147 (165)
++-.|.-+++.+++.|++.|.+
T Consensus 62 Nia~El~k~~~~~~~l~~~~~~ 83 (85)
T PRK14126 62 NVIHDYIKLKEEYEKLKESMTK 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777777654
No 125
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=44.84 E-value=1.8e+02 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
+.|+..+|.|+ |..|..-..+++.....+++.|.+
T Consensus 99 k~dL~~~k~e~----KK~fdK~s~~ye~~~~k~~k~Kk~ 133 (215)
T cd07604 99 KGDLKGSKGDL----KKPFDKAWKDYETKASKIEKEKKQ 133 (215)
T ss_pred HHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHhccch
Confidence 44555555555 455666666666666666666554
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.78 E-value=2e+02 Score=24.64 Aligned_cols=25 Identities=4% Similarity=0.272 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQ 117 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~ 117 (165)
...+++++...+...++.+++.-+.
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677776665443
No 127
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=44.77 E-value=1.8e+02 Score=23.98 Aligned_cols=40 Identities=10% Similarity=0.317 Sum_probs=26.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+.|+.......+..+.+.+.+...++.|+.+-..+=.-||
T Consensus 155 ~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~df 194 (224)
T cd07623 155 QQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDF 194 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555667777888888888888887754444443
No 128
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.72 E-value=1.6e+02 Score=24.51 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+.+|+.+-+.+ +.+...++++++.++.+++.++..
T Consensus 133 ~~~~L~~~n~~L-~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 133 VINGLKEENQKL-KNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444 334444555555555555555443
No 129
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.69 E-value=62 Score=30.47 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
..|+.+..+++..+..|..+|
T Consensus 119 ~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 130
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=44.50 E-value=1.6e+02 Score=23.56 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 94 SKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 94 TK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
+|.++-.+.-.-+..+..++.||..+ +.+.+..=.+.++|...--+.+++|
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~ev-k~~v~~~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEV-KEEVSEVIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777777544 3334444444444444444444444
No 131
>PLN02939 transferase, transferring glycosyl groups
Probab=44.40 E-value=1.5e+02 Score=30.40 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhh----------hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQ----------EHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 108 d~a~LR~Em~~~e----------ksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.+.+||.||.... -.|+..||.||--|+.+++-||++|-+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (977)
T PLN02939 202 QLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIE 251 (977)
T ss_pred HHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455777765432 357889999999999999999998854
No 132
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.39 E-value=1.2e+02 Score=21.82 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 031121 95 KGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKM 141 (165)
Q Consensus 95 K~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekL 141 (165)
|+.+.+.+......+..|-..+... +.|-..|+.||+-|+.-|+-|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~V-k~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEV-KEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455554444333 344555555555555555554
No 133
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=44.16 E-value=52 Score=25.55 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=32.1
Q ss_pred eccHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 50 LVDTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 50 ~FDT~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
..|+-.|++.+. ..|+|+.+++++..++.+++.+.+.
T Consensus 30 ~mt~~el~~~Ia~~s~~s~~dv~~vl~~l~~~i~~~L~ 67 (145)
T TIGR01201 30 VIDFEEIAELIAEESSLSPGDVKGIIDRLAYVLRRELA 67 (145)
T ss_pred CcCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 479999999994 6679999999999999999877654
No 134
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=43.59 E-value=68 Score=22.07 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.+++.+ +..|++..+++.+++++-+++.+.+.
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~ 37 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALK 37 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3566677 46789999999999999999887664
No 135
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=43.58 E-value=1.3e+02 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...||+-+.-..+..
T Consensus 43 ~l~~l~~I~~lr~~G~~l~~I~~~l~ 68 (107)
T cd01111 43 ALQRLRFVRAAFEAGIGLDELARLCR 68 (107)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788999999999999766544443
No 136
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=43.43 E-value=53 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=25.6
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|++.+- ..|+|..+++.+++++-+++.+.+.
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~ 37 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLK 37 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666663 5689999999999999998877654
No 137
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=42.93 E-value=2.4e+02 Score=28.09 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031121 81 LNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEH 122 (165)
Q Consensus 81 l~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eks 122 (165)
++..-|.+.+.|.++..||-..+.+++.+++||=-+..+||.
T Consensus 155 LnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 155 LNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred hchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 344445566677777777777778889999999887777654
No 138
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=42.91 E-value=63 Score=23.10 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.5
Q ss_pred ccHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 51 VDTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 51 FDT~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
++.-.|++.+. ..|+|..+++++++++.+++.+.+.
T Consensus 3 mtk~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~ 39 (99)
T PRK00285 3 LTKADLAEALFEKVGLSKREAKELVELFFEEIRDALE 39 (99)
T ss_pred cCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45667888884 5679999999999999999877654
No 139
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.61 E-value=1.2e+02 Score=22.90 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=8.6
Q ss_pred CcceeccHHHHHHHH
Q 031121 46 KRAFLVDTLQLVRGL 60 (165)
Q Consensus 46 ~~~~~FDT~~fVk~L 60 (165)
...-++|+-+++..-
T Consensus 17 ~kIa~Vd~~~v~~~~ 31 (158)
T PF03938_consen 17 PKIAVVDVDKVFQES 31 (158)
T ss_dssp -CEEEE-HHHHHHHH
T ss_pred CcEEEeeHHHHHHhC
Confidence 356667877777654
No 140
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=42.32 E-value=1.4e+02 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=21.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...|||-++...+..
T Consensus 43 ~l~~l~~I~~lr~~G~sL~eI~~~l~ 68 (127)
T cd04784 43 HLERLLFIRRCRSLDMSLDEIRTLLQ 68 (127)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35677899999999999988766654
No 141
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=42.29 E-value=42 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.5
Q ss_pred ceeccHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 031121 48 AFLVDTLQLVRGLEAQGVPSKQAEAITAAITE 79 (165)
Q Consensus 48 ~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~ 79 (165)
.+..|.-.|...|+.-|||.+.++++.....+
T Consensus 57 k~n~~~~~l~~eL~~lglp~e~~~~l~~~~~~ 88 (174)
T cd04752 57 KYNVDGESLSSELQQLGLPKEHATSLCRSYEE 88 (174)
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34578889999999999999999999987655
No 142
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.25 E-value=1.6e+02 Score=22.80 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHHHHhhHHH--HhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhhh-------------hhhhhhH
Q 031121 65 VPSKQAEAITAAITEVLNDSLEN--VAHTFVSKGEMQKTEMIQ-EANLSKFKSEVQSSQE-------------HHFSMLQ 128 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~~le~--~~~~lvTK~dle~~~~~q-kad~a~LR~Em~~~ek-------------sefa~Lr 128 (165)
....|+......+.+.+..-+.. ...++.+.-+.-...++. ...+++.+..+..+.. .+...+.
T Consensus 79 ~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e 158 (218)
T cd07596 79 LSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAE 158 (218)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 45556665555555544443321 112333333322222222 3445555554443322 2345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhc
Q 031121 129 RETEKLRSDIEKMRSELRYEIDKVTAGQRLD 159 (165)
Q Consensus 129 ~e~ekL~~ElekLkq~LreEI~kl~a~vrLD 159 (165)
.+.+.++.+.+.+...++.|+.+..-.-.-|
T Consensus 159 ~~~~~~~~~~~~i~~~~~~El~~f~~~~~~d 189 (218)
T cd07596 159 SALEEARKRYEEISERLKEELKRFHEERARD 189 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777778888877765443333
No 143
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.24 E-value=1.2e+02 Score=28.84 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEK 140 (165)
Q Consensus 126 ~Lr~e~ekL~~Elek 140 (165)
....+.++|+.|+..
T Consensus 216 ~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 216 KIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 144
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=42.24 E-value=65 Score=22.80 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=26.6
Q ss_pred HHHHHHhh--CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGLEA--QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~Le~--~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|++.+.+ .|+|..+++.+++++-+.+.+.+.
T Consensus 5 eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~ 38 (94)
T PRK00199 5 ELIERLAARNPHLSAKDVENAVKEILEEMSDALA 38 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888864 589999999999999998877664
No 145
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=42.06 E-value=66 Score=22.66 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=26.8
Q ss_pred HHHHHHHhh--CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGLEA--QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~Le~--~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+.+ .|+|..+++.++.++-+.+.+.+.
T Consensus 4 ~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~ 38 (94)
T TIGR00988 4 SELIERIATQQSHLPAKDVEDAVKTMLEHMASALA 38 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357888864 479999999999999998877664
No 146
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=42.02 E-value=71 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.9
Q ss_pred cceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 031121 47 RAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 47 ~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~ 83 (165)
-.|-.|...+...|+.-|+|.+.|+++..+..+-...
T Consensus 65 ~k~nv~~~~L~~eL~~lgL~~eka~~~~~~w~~~~~~ 101 (180)
T cd04755 65 LKRNLTAEQLREDLIQLGLSEEKASYFSEQWKQHYST 101 (180)
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHH
Confidence 3466888899999999999999999998887775444
No 147
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.96 E-value=2.2e+02 Score=28.17 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
.++|++++.-++.+ |..+.+-+.|.++|+.+|++-.-.++|=+.+-+-.+
T Consensus 106 ~seI~~~n~kiEel-k~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 106 NSEIEEINTKIEEL-KRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HhHHHHHHHHHHHH-HHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 34444444444333 222334455566666666666666655554444333
No 148
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=41.85 E-value=1.4e+02 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...|||-++...+..
T Consensus 44 ~l~~l~~I~~lr~~G~sL~eI~~~l~ 69 (140)
T PRK09514 44 DLQRLRFIRRAKQLGFTLEEIRELLS 69 (140)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788999999999999988776664
No 149
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.61 E-value=1.2e+02 Score=23.67 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=11.3
Q ss_pred eccHHHHHHHHhhCCCChHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai 73 (165)
||-.--++.-|.. +|+..++.-+
T Consensus 16 Pys~~di~~nL~~-~~~K~~v~k~ 38 (169)
T PF07106_consen 16 PYSAQDIFDNLHN-KVGKTAVQKA 38 (169)
T ss_pred CCcHHHHHHHHHh-hccHHHHHHH
Confidence 3444445555544 5666554333
No 150
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.30 E-value=1.3e+02 Score=29.41 Aligned_cols=21 Identities=48% Similarity=0.764 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
..++.++++|..+++.++.++
T Consensus 446 ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 446 EELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 151
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=41.10 E-value=60 Score=22.14 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=24.4
Q ss_pred HHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+++.+. ..|++..+++.++.++.+++.+.+.
T Consensus 5 l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~ 36 (87)
T cd00591 5 LIEAIAEKTGLSKKDAEAAVDAFLDVITEALA 36 (87)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 455553 5689999999999999998877654
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.98 E-value=1.2e+02 Score=21.10 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
+-.+.+||.+-..+. .+-..|+.++++|+.|-.....+|+-=+.|+
T Consensus 24 q~e~eeLke~n~~L~-~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 24 QMENEELKEKNNELK-EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555544432 5667777788888877777777776655554
No 153
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.97 E-value=2e+02 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.504 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH--hhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEVQ--SSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 105 qkad~a~LR~Em~--~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
+++.+++|+..+. -..-++|..+-+|.++|.+|+++++-+
T Consensus 349 L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~ 390 (622)
T COG5185 349 LQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQ 390 (622)
T ss_pred HHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3566677776663 344567888888888888888877644
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.75 E-value=3.8e+02 Score=26.66 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSSQE---------HHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 106 kad~a~LR~Em~~~ek---------sefa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
-.|+++|--|-..++| -||..|+.|+.+|.-|++-|+.+|- |..++
T Consensus 96 l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle-e~~rL 150 (717)
T PF09730_consen 96 LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE-EAARL 150 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4667776555444433 2688999999999999999998873 44443
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.70 E-value=2.5e+02 Score=24.53 Aligned_cols=45 Identities=11% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.+.++-+.+... +.++..++.++.+++.+|+.+++++++.=..+.
T Consensus 60 qi~~~~~k~~~~-~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 60 QIEEIQSKIDEL-QKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 345667777777777777777777766554443
No 156
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=40.47 E-value=98 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 116 VQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 116 m~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
|..+.+.+...|+.|.+.++.+++.|+..
T Consensus 396 L~~LT~~e~~kL~~e~~~l~~ei~~l~~~ 424 (439)
T PHA02592 396 IYSMTSDEREKLQKEAEELEKEHEYWKKT 424 (439)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444566666777777777777776653
No 157
>PRK09039 hypothetical protein; Validated
Probab=40.35 E-value=2.6e+02 Score=24.73 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Q 031121 132 EKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 132 ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
+.|..+|+..-++-..|+.+.+.++
T Consensus 175 ~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 175 ADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333322233344444444
No 158
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.24 E-value=1.6e+02 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~Lr 146 (165)
-|.+++.|.+-|+.|+.+|.
T Consensus 71 tR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 71 TREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35556666666777777664
No 159
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.17 E-value=1.4e+02 Score=26.10 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 97 EMQKTEMIQEANLSKFKSEVQSSQ------EHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 97 dle~~~~~qkad~a~LR~Em~~~e------ksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
|+..++-..+..++.+..+++.++ .++-++|...+++-+.|+|+.+++|
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555554443332 3445666666777777777777775
No 160
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=39.71 E-value=43 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
.++.+..++.|.+.|||-++...++
T Consensus 42 ~l~~l~~i~~l~~~g~~l~~i~~~l 66 (67)
T cd04764 42 DIELLKKIKTLLEKGLSIKEIKEIL 66 (67)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 4678899999999999999877654
No 161
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=39.30 E-value=1.2e+02 Score=23.82 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred cceeccHH----HHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHh
Q 031121 47 RAFLVDTL----QLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVA 89 (165)
Q Consensus 47 ~~~~FDT~----~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~ 89 (165)
....||-- .|.+++-+..+|++|.++.+......++..+....
T Consensus 46 ~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq 92 (128)
T PRK13717 46 VTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQ 92 (128)
T ss_pred eEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788854 68888888899999999999998888888776433
No 162
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=38.97 E-value=2.9e+02 Score=24.78 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 71 EAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEA-NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 71 Eai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qka-d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
..-+..++..+...+..+..+|-.-.+-.+..+..+. .....|.+|+ .+...+..|+..+..+|+.|+.-+++-.
T Consensus 217 ~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le----~ql~~~~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 217 RQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELE----WQLKKTLQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888776665555555542 3445666664 5556677788888888888888887766
Q ss_pred Hhhc-cchhhc
Q 031121 150 DKVT-AGQRLD 159 (165)
Q Consensus 150 ~kl~-a~vrLD 159 (165)
.-++ |..||+
T Consensus 293 ~~lkvaqTRL~ 303 (384)
T PF03148_consen 293 GPLKVAQTRLE 303 (384)
T ss_pred hhHHHHHHHHh
Confidence 5443 333443
No 163
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.84 E-value=4.5e+02 Score=27.42 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 91 TFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 91 ~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.+..+.+++...-.....+.+++.++..+ +.+...+..+.++++.+.+.+++....+..+++
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDA-KEQDSPLETFLEKDQQEKEELISSKETSNKKAQ 940 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444455555555555543 344555555555555555555555555444443
No 164
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=38.69 E-value=37 Score=20.87 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=16.9
Q ss_pred CCcceeccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 45 GKRAFLVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 45 ~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
++.++.|| ++|+++|+.||..
T Consensus 13 ~G~V~Vfd-----------~v~~~Ka~~im~l 33 (36)
T PF06200_consen 13 GGQVCVFD-----------DVPPDKAQEIMLL 33 (36)
T ss_pred CCEEEEeC-----------CCCHHHHHHHHHH
Confidence 45577787 8999999999875
No 165
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=1.3e+02 Score=29.51 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred eccHHHHHHHHhhCC-CChHHHH------HHHHHHHHHHHhhHHHHhhhhhhh----hHHHHHHHHHHHHHHHHHHHHHh
Q 031121 50 LVDTLQLVRGLEAQG-VPSKQAE------AITAAITEVLNDSLENVAHTFVSK----GEMQKTEMIQEANLSKFKSEVQS 118 (165)
Q Consensus 50 ~FDT~~fVk~Le~~G-ft~eQAE------ai~~al~~vl~~~le~~~~~lvTK----~dle~~~~~qkad~a~LR~Em~~ 118 (165)
-||--.|+-.+...- |.+=+.+ .+-.+|.++||+. |.|+|.= .+++...-+.++.+.+||.|+..
T Consensus 32 dFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~D----YADFVnLStnLVgld~aln~i~qpL~qlreei~s 107 (705)
T KOG2307|consen 32 DFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDD----YADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS 107 (705)
T ss_pred cCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 366677777665442 2222211 2233444444442 2333221 12344445567778888888877
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 119 SQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 119 ~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+.+=-.++++..++ ..|....|..
T Consensus 108 ~rgsV~ea~~alr~q-~se~~~~Re~ 132 (705)
T KOG2307|consen 108 TRGSVGEAERALRQQ-CSELCSNREK 132 (705)
T ss_pred HHhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 766666666655532 2344444443
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.53 E-value=2.8e+02 Score=24.46 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCCcceeccHHHHHHHHhhCCCChHHHHH--------HHHHHHHHHHhhHHHHhhhhh--hh-hHHHHH-HHHH-----
Q 031121 43 SNGKRAFLVDTLQLVRGLEAQGVPSKQAEA--------ITAAITEVLNDSLENVAHTFV--SK-GEMQKT-EMIQ----- 105 (165)
Q Consensus 43 ~~~~~~~~FDT~~fVk~Le~~Gft~eQAEa--------i~~al~~vl~~~le~~~~~lv--TK-~dle~~-~~~q----- 105 (165)
|+..+...=+.+++||.- ++-||.. +.+.+.+.+..+++.+..|.. ++ .++-+. --..
T Consensus 108 ~~d~r~lm~~Qf~lvK~~-----aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~ 182 (312)
T smart00787 108 SPDVKLLMDKQFQLVKTF-----ARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD 182 (312)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444556666643 4445543 355666666666665554421 11 111111 1111
Q ss_pred --HHHHHH---HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHhhccc
Q 031121 106 --EANLSK---FKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL---RYEIDKVTAG 155 (165)
Q Consensus 106 --kad~a~---LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L---reEI~kl~a~ 155 (165)
+..+.. +..|+..-+..+...+|.+...+..+++..++++ ++++..+++.
T Consensus 183 ~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 183 ALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2334555555666677777776666666666553 3344444433
No 167
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=38.37 E-value=1e+02 Score=31.36 Aligned_cols=12 Identities=50% Similarity=0.620 Sum_probs=6.0
Q ss_pred CCChHHHHHHHH
Q 031121 64 GVPSKQAEAITA 75 (165)
Q Consensus 64 Gft~eQAEai~~ 75 (165)
|||+.||++|..
T Consensus 426 ~~s~~qa~aIl~ 437 (957)
T PRK13979 426 GFTDEQAEAILE 437 (957)
T ss_pred CCCHHHHHHHHh
Confidence 455555555543
No 168
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.33 E-value=1.3e+02 Score=21.36 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=19.8
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
..+.+.+++.|...|||-++-..++
T Consensus 43 ~~~~l~~I~~lr~~G~~l~eI~~~l 67 (97)
T cd04782 43 QFEQLDIILLLKELGISLKEIKDYL 67 (97)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3568899999999999987755543
No 169
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=38.29 E-value=1.3e+02 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
.++.+.+.|..++-++-+.++..|..+..
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 170
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=38.29 E-value=2.2e+02 Score=23.34 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHHHHHHHH
Q 031121 100 KTEMIQEANLSKFKSEVQSSQEHH--FSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 100 ~~~~~qkad~a~LR~Em~~~ekse--fa~Lr~e~ekL~~ElekLkq~ 144 (165)
...-+.+.+|++|.++++.++.-. .-.||+.-.-|..|+|.....
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777888888887765433 345566666666666655543
No 171
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=37.86 E-value=1.2e+02 Score=21.81 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.9
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
.++.+.+++.|.+.|||-++...+.
T Consensus 43 dl~~l~~I~~l~~~G~~l~ei~~~~ 67 (102)
T cd04775 43 DLSRLEKIVFLQAGGLPLEEIAGCL 67 (102)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4678899999999999998876544
No 172
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.81 E-value=4.2e+02 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=7.8
Q ss_pred HHHHHHHHhhCCCChH
Q 031121 53 TLQLVRGLEAQGVPSK 68 (165)
Q Consensus 53 T~~fVk~Le~~Gft~e 68 (165)
.+..++++ |||++
T Consensus 490 a~~iA~~~---Glp~~ 502 (782)
T PRK00409 490 AFEIAKRL---GLPEN 502 (782)
T ss_pred HHHHHHHh---CcCHH
Confidence 33445555 88874
No 173
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=37.73 E-value=2.7e+02 Score=24.17 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHH---hhCCCChHHHHHHHHHHHHHHHhh
Q 031121 56 LVRGL---EAQGVPSKQAEAITAAITEVLNDS 84 (165)
Q Consensus 56 fVk~L---e~~Gft~eQAEai~~al~~vl~~~ 84 (165)
|..+| .+.|=+.+.++.+-....++.++.
T Consensus 196 ~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~ 227 (293)
T PF09712_consen 196 MMEKLQERAEEGEQIKSWREFYDIWIDAAEEA 227 (293)
T ss_pred HHHHHHHhhccCCCCcCHHHHHHHHHHHHHHH
Confidence 44444 344444445555555555554443
No 174
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=37.51 E-value=3.7e+02 Score=25.65 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 81 LNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 81 l~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~k 151 (165)
+++-++.-|.-+.-|-|+++.--.+.-.++..++.++.. |.|=..|+-+..+++.+.-.|..+-..||..
T Consensus 371 iEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEs-r~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 371 IEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQES-RNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444445556667776665444455555666666544 2333444444444444444444444444443
No 175
>PRK10698 phage shock protein PspA; Provisional
Probab=36.80 E-value=1.8e+02 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~ 144 (165)
..|+....+|+..|+.++.+
T Consensus 116 ~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 116 ARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 176
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.78 E-value=2.8e+02 Score=24.07 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=18.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLEN 87 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le~ 87 (165)
.+++++.|..|+.++.+..+..++.
T Consensus 138 ~~~dP~~A~~ian~l~~~~~~~i~~ 162 (362)
T TIGR01010 138 TAFDAEEAQKINQRLLKEGERLINR 162 (362)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999986654444443
No 177
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=36.77 E-value=42 Score=19.82 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCChHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~ 74 (165)
..++.|.+.||+++++...-
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL 23 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREAL 23 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 46788988899999875443
No 178
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.69 E-value=54 Score=27.52 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSS 119 (165)
Q Consensus 106 kad~a~LR~Em~~~ 119 (165)
..++++||.++...
T Consensus 93 e~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 93 EAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHhh
Confidence 45677777776554
No 179
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=36.43 E-value=1.8e+02 Score=22.30 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=21.9
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...|||-++...++.
T Consensus 43 dl~~l~~I~~lr~~G~sl~eI~~~l~ 68 (139)
T cd01110 43 VLRRIAFIKVAQRLGLSLAEIAEALA 68 (139)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788999999999999998766654
No 180
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.41 E-value=1.3e+02 Score=20.21 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
|..+--|+..+..++-..+.......+.++++|+..|+
T Consensus 41 l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 41 LKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555556556667777778888888888888875
No 181
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.32 E-value=1.5e+02 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
+..+.+++.|++.|||-++-..++
T Consensus 42 ~~~l~~I~~lr~~G~sL~eI~~~l 65 (107)
T cd04777 42 QDDLEFILELKGLGFSLIEIQKIF 65 (107)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
Confidence 467899999999999988755444
No 182
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.26 E-value=1.5e+02 Score=20.75 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+|-.|--|...+...-......+-.++-.|+.+++.|+..
T Consensus 18 ~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 18 NLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444333333344444444444444444443
No 183
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.96 E-value=2.8e+02 Score=23.79 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 111 KFKSEVQSSQEHHFS-MLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 111 ~LR~Em~~~eksefa-~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
-|+.++.-.+..++. .++++.-+++.|.+++.+++++.+.+.+.
T Consensus 101 ~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k 145 (230)
T PF03904_consen 101 ILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQK 145 (230)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444433332 35566666777777777777776665543
No 184
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=35.89 E-value=2.5e+02 Score=23.11 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031121 99 QKTEMIQEANLSKFKSEVQ 117 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~ 117 (165)
++...+++..+++-|.+-+
T Consensus 104 e~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 104 DAAVAAYEQELAQARAKAH 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555543
No 185
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.87 E-value=3.2e+02 Score=26.36 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhccchhhccccc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYE---IDKVTAGQRLDLNLE 163 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreE---I~kl~a~vrLDlNLE 163 (165)
....++|++++...+ -+....-.+.+++-.+.+.|.+.+.-- |-+-..|+-|-+|.|
T Consensus 388 ~~~~~~L~k~V~~~~-leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E 447 (622)
T COG5185 388 NIQSDKLTKSVKSRK-LEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIE 447 (622)
T ss_pred cchHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccc
Confidence 455667777775432 333344445566666666655554222 444445555666644
No 186
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.82 E-value=1.1e+02 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq 143 (165)
.++..|..++..|+.+++.|++
T Consensus 32 ~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677777777777664
No 187
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=35.74 E-value=2.2e+02 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-----------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSE-----------VQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~E-----------m~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.||++++.+.--.|.|+.++-.. ++.++.+=...|-.-.+|.+.|...|.++++.
T Consensus 33 lT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~h 98 (146)
T PF07295_consen 33 LTREELALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQDLEH 98 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHh
Confidence 46666666555556666555433 55666666777777777888888888777754
No 188
>PRK13749 transcriptional regulator MerD; Provisional
Probab=35.60 E-value=1.6e+02 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.2
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~al 77 (165)
....++|++.|...|||-++...+..+.
T Consensus 46 ~l~rL~~I~~~r~~G~sL~eI~~ll~l~ 73 (121)
T PRK13749 46 ALQRLCFVRAAFEAGIGLDALARLCRAL 73 (121)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence 3567899999999999999987777653
No 189
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=35.57 E-value=72 Score=21.39 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLk 142 (165)
-.+++..+.|+.||.+|+
T Consensus 34 ~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 34 GDIAAALEKLKAEIAKLE 51 (53)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344555566666666654
No 190
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.01 E-value=1.7e+02 Score=28.06 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
.+.++-++..+..+ ..+...|+.|+.+|+.+|..++..|-+|+
T Consensus 154 eAe~~~~krr~~~l-e~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 154 EAEINTLKRRIKAL-EDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444455555444 35667888888888888888887776665
No 191
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=34.91 E-value=50 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=26.7
Q ss_pred cHHHHHHHHh-hCCC-ChHHHHHHHHHHHHHHHhhHH
Q 031121 52 DTLQLVRGLE-AQGV-PSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 52 DT~~fVk~Le-~~Gf-t~eQAEai~~al~~vl~~~le 86 (165)
|++.|+..++ ..|+ ++++|+.++.++-..+.+-+.
T Consensus 1 ~~~~fl~~V~~~~~l~~~~~A~~a~~avL~~L~~rL~ 37 (125)
T PF10025_consen 1 KYDEFLDEVRERAGLPDREEAYRATRAVLHTLRERLP 37 (125)
T ss_dssp HHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTTS-
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 5788999994 6778 899999999998888876543
No 192
>PF02909 TetR_C: Tetracyclin repressor, C-terminal all-alpha domain; InterPro: IPR004111 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in the tetracycline transcriptional repressor TetR, which binds to the Tet(A) gene to repress its expression in the absence of tetracycline []. Tet(A) is a membrane-associated efflux protein that exports tetracycline from the cell before it can attach to ribosomes and inhibit polypeptide chain growth. TetR occurs as a homodimer and uses two helix-turn-helix (HTH) motifs to bind tandem DNA operators, thereby blocking the expression of the associated genes, TetA and TetR. The structure of the class D TetR repressor protein [] involves 10 alpha-helices, with connecting turns and loops. The three N-terminal helices constitute the DNA-binding HTH domain, which has an inverse orientation compared with HTH motifs in other DNA-binding proteins. The core of the protein, formed by helices 5-10, is responsible for dimerisation and contains, for each monomer, a binding pocket that accommodates tetracycline in the presence of a divalent cation.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 2Y30_B 3ZQL_C 2Y31_B 2Y2Z_A 2VPR_A 3B6A_A 3B6C_A 2OPT_A 2NS7_B 2NS8_C ....
Probab=34.82 E-value=61 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.7
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhh
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLNDS 84 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~~ 84 (165)
.+++.|..+||+.++|-.+..++...+...
T Consensus 49 ~~l~~L~~aG~~~~~a~~~~~~l~~~v~g~ 78 (139)
T PF02909_consen 49 AMLRALRDAGFSPEEAARAYAALSSFVLGF 78 (139)
T ss_dssp HHHHHHHHTTEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 578899999999999988888877765554
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.43 E-value=2e+02 Score=21.68 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+..||.++..+ +.++..|+.+.+..+..++..+..
T Consensus 60 ~L~~lr~e~~~~-~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 60 ELQQLREELQEL-QQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666554 355666666666666655554433
No 194
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=2e+02 Score=21.72 Aligned_cols=31 Identities=6% Similarity=0.197 Sum_probs=19.1
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 117 ~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
-...|.||...+.-.-+-+.+++.|.+++-+
T Consensus 54 DlVsREEFdvq~qvl~rtR~kl~~Leari~~ 84 (103)
T COG2960 54 DLVSREEFDVQRQVLLRTREKLAALEARIEE 84 (103)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666677777777766543
No 195
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.34 E-value=2e+02 Score=21.55 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=21.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+++++.|...|||-++-..+..
T Consensus 43 ~l~~l~~I~~lr~lG~sL~eI~~~l~ 68 (127)
T TIGR02047 43 HVERLAFIRNCRTLDMSLAEIRQLLR 68 (127)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35668999999999999988666554
No 196
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=34.29 E-value=1.1e+02 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=31.7
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSL 85 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~l 85 (165)
||..++.+..+.+||+...-.++++++.-++.+..
T Consensus 22 ~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~ 56 (174)
T cd04752 22 IDYEKVLKLTADAKFESGDVKASIAVLSFILSSAA 56 (174)
T ss_pred CCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999886654
No 197
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.29 E-value=2.9e+02 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=27.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+.|+..+....+..+.+.+.+-..++.|+.+-.-+=-.||
T Consensus 165 ~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Df 204 (234)
T cd07665 165 KDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDF 204 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777778888888888888877654444443
No 198
>PRK11637 AmiB activator; Provisional
Probab=34.21 E-value=3.5e+02 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLk 142 (165)
.+++|+++.... ..+...|+.+..+|...|+++.
T Consensus 220 ~l~~L~~~~~~~-~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKD-QQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443322 2334455555555555555544
No 199
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=34.10 E-value=2.9e+02 Score=23.35 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=12.3
Q ss_pred HHhhhhhhhhHHHHHHHHH
Q 031121 87 NVAHTFVSKGEMQKTEMIQ 105 (165)
Q Consensus 87 ~~~~~lvTK~dle~~~~~q 105 (165)
...++++|+.++++.....
T Consensus 126 L~~~g~iS~~~~d~~~~~~ 144 (327)
T TIGR02971 126 LFRDGAVSASDLDSKALKL 144 (327)
T ss_pred HHHcCCccHHHHHHHHHHH
Confidence 3456778888887765443
No 200
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=34.01 E-value=2.7e+02 Score=24.85 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 75 AAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ-----SSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 75 ~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~-----~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.....+++..+|.++.=++.|.. .+...+.+|+.... .-...+|..||.+...+..|+-.|.+-
T Consensus 47 ~dFv~~Ld~ELEKv~~F~lek~~------el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 47 SDFVRLLDAELEKVNGFQLEKES------ELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778877777776654 34555667776664 455678888898888888888887764
No 201
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.58 E-value=60 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~k 151 (165)
.++....++..+++.++.++..+...
T Consensus 29 ~l~~~~~r~~ae~en~~~r~~~e~~~ 54 (165)
T PF01025_consen 29 ELKERLLRLQAEFENYRKRLEKEKEE 54 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555444443
No 202
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=33.47 E-value=85 Score=23.53 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+...|+.++..|.+++++|+..
T Consensus 64 ~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 64 AELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34455566666666666666654
No 203
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=33.41 E-value=1.2e+02 Score=24.15 Aligned_cols=59 Identities=31% Similarity=0.274 Sum_probs=39.7
Q ss_pred cccCCCCcceeccHHHHHHHHhhC----CCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHH
Q 031121 40 LVKSNGKRAFLVDTLQLVRGLEAQ----GVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTE 102 (165)
Q Consensus 40 ~~~~~~~~~~~FDT~~fVk~Le~~----Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~ 102 (165)
.+....++...||..++...|+++ |.+..+++.++..+...+... ..+-+|-++++.+.
T Consensus 50 ~VIKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~i~~~V~~~l~~~----~~~~IsveEIqDiV 112 (154)
T PRK00464 50 LVIKKDGRREPFDREKLRRGLRRACEKRPVSSEQIEAAVSRIERQLRAS----GEREVPSKEIGELV 112 (154)
T ss_pred EEEecCCcCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc----CCCCCCHHHHHHHH
Confidence 466667778899999999999776 567788777776655544332 11236666666543
No 204
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.13 E-value=1.4e+02 Score=19.55 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMR 142 (165)
Q Consensus 127 Lr~e~ekL~~ElekLk 142 (165)
|+.++..|..++..|+
T Consensus 45 L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 45 LKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 205
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.03 E-value=4.7e+02 Score=25.72 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHhhHHHHhhhhhhhhHHHHHHHHH
Q 031121 79 EVLNDSLENVAHTFVSKGEMQKTEMIQ 105 (165)
Q Consensus 79 ~vl~~~le~~~~~lvTK~dle~~~~~q 105 (165)
+++++.++...++..-|.|+-+.+.+-
T Consensus 562 ~lL~~a~~vfrEqYi~~~dlV~~e~qr 588 (741)
T KOG4460|consen 562 QLLSRATQVFREQYILKQDLVKEEIQR 588 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777888888877766554
No 206
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.88 E-value=3.1e+02 Score=23.28 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQ 117 (165)
Q Consensus 106 kad~a~LR~Em~ 117 (165)
+++...|++|++
T Consensus 157 ~~~~~kL~~el~ 168 (216)
T KOG1962|consen 157 KADLEKLETELE 168 (216)
T ss_pred HhhHHHHHHHHH
Confidence 344444444443
No 207
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.87 E-value=3.8e+02 Score=26.03 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 031121 65 VPSKQAEAITAAITEVLND 83 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~ 83 (165)
-+++.|..|+.++.++..+
T Consensus 237 ~dP~~Aa~ilN~la~~Yi~ 255 (726)
T PRK09841 237 DDPQLITRILNSIANNYLQ 255 (726)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678999999998887653
No 208
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=32.86 E-value=1.6e+02 Score=20.01 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031121 94 SKGEMQKTEMIQEANLSKFKSEVQSSQEH 122 (165)
Q Consensus 94 TK~dle~~~~~qkad~a~LR~Em~~~eks 122 (165)
.+.+++.++...+..+..++..|..++..
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666655554433
No 209
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=32.85 E-value=73 Score=18.40 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+.+|..-||++++|.....
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~ 23 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALR 23 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 357788999999998755443
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.83 E-value=4.4e+02 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq 143 (165)
+..++.+.+.++.+++.+++
T Consensus 232 i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555
No 211
>PRK05560 DNA gyrase subunit A; Validated
Probab=32.74 E-value=2e+02 Score=28.56 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEK 140 (165)
Q Consensus 125 a~Lr~e~ekL~~Elek 140 (165)
..|+.|.+.|+.+++.
T Consensus 433 ~kL~~E~~~l~~ei~~ 448 (805)
T PRK05560 433 DKIEDEYKELLALIAD 448 (805)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 212
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.72 E-value=1.9e+02 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=22.5
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.++.+.+++.|.+.|||-++...+...
T Consensus 43 ~l~~l~~I~~lr~~G~sL~eI~~~l~~ 69 (113)
T cd01109 43 DLEWLEFIKCLRNTGMSIKDIKEYAEL 69 (113)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 577889999999999999987766653
No 213
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=32.69 E-value=1.7e+02 Score=26.40 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=50.5
Q ss_pred cceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHhh--
Q 031121 47 RAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTE-----MIQEANLSKFKSEVQSS-- 119 (165)
Q Consensus 47 ~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~-----~~qkad~a~LR~Em~~~-- 119 (165)
+.+.+|+-+.+..+ ++. +.++++++.+--.-=..+-.. +|.++.+.+. ........+|+.++...
T Consensus 238 ~~v~~D~qa~~~g~-----~~~--~~l~~~~~~ms~~rDp~~P~~-Lt~~q~~~i~~dpei~~l~~~~~~L~~~i~~~~~ 309 (418)
T PF11917_consen 238 RNVHVDLQAIFLGL-----PPR--EELIRAARSMSRSRDPRAPRE-LTDEQKASIEQDPEIQELQRRRDELKKEIRREYG 309 (418)
T ss_pred ccCCccHHHHHhCC-----Cch--HHHHHHhhhhhhhhCCCCCcc-CCHHHHhhhhcCcHHHHHHHHHHHHHhhhhhhcc
Confidence 34578999888644 433 667776665432211111122 3443322211 12234444555533321
Q ss_pred --hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 120 --QEHHFSMLQRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 120 --eksefa~Lr~e~ekL~~ElekLkq~LreEI~k 151 (165)
.+..-..+..+.+++++++...+++|+.++.+
T Consensus 310 ~~~~~~~~~~~~~~~k~~r~l~~~rqrlr~~~~~ 343 (418)
T PF11917_consen 310 SISKAKGTPLYRRYEKLQRELRNERQRLRRELKK 343 (418)
T ss_pred chhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11222235667888888888888888877654
No 214
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=32.51 E-value=1.6e+02 Score=23.25 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=21.6
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.+..+.|++.|...|||-++-..++..
T Consensus 53 ~i~~L~~I~~lr~lG~sL~eIk~ll~~ 79 (154)
T PRK15002 53 VLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 367789999999999999886555543
No 215
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.42 E-value=2.6e+02 Score=22.74 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSELRYEI 149 (165)
Q Consensus 133 kL~~ElekLkq~LreEI 149 (165)
++++|++..|.+...|+
T Consensus 44 R~~AefeN~rkR~~ke~ 60 (178)
T PRK14161 44 RTTAEIDNTRKRLEKAR 60 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 216
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=32.24 E-value=1.8e+02 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=22.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH--HHHHHHhhccch
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE--LRYEIDKVTAGQ 156 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~--LreEI~kl~a~v 156 (165)
...+.+...++.|..||+.|+.+ ||.+|..-.+..
T Consensus 350 ~A~~~~~~~i~~LDrEI~~Lk~E~~lRk~l~~nT~~~ 386 (418)
T TIGR03755 350 PAQQEVDKAIDKLDREINNLKTELELRKELASNTALT 386 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34456666777888888877765 566666544443
No 217
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.23 E-value=2.7e+02 Score=23.37 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.+...++...-++++|.+..|.+...|+....
T Consensus 75 ~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 106 (211)
T PRK14160 75 NELEALKDRLLRTVAEYDNYRKRTAKEKEGIY 106 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666667777888888877777776543
No 218
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.22 E-value=1.2e+02 Score=24.68 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~ 144 (165)
...|+.+++.|..++++|.++
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 219
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.20 E-value=1.8e+02 Score=24.80 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI 149 (165)
.+-|+++|++.+|.+...|+
T Consensus 89 ~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 89 QYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 220
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.06 E-value=2e+02 Score=21.78 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 91 TFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 91 ~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
.|+--++.-+..-..+..+..++.++..+ +.+....+...+..+...+.-+..|..||.
T Consensus 50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l-~~~~~~a~~~l~~~e~sw~~qk~~le~e~~ 108 (132)
T PF07926_consen 50 ELVKHAEDIKELQQLREELQELQQEINEL-KAEAESAKAELEESEASWEEQKEQLEKELS 108 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34333333333333455555555555444 233334444444333333333333333333
No 221
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.05 E-value=65 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCC--CChHHHHHHHHHHHH
Q 031121 53 TLQLVRGLEAQG--VPSKQAEAITAAITE 79 (165)
Q Consensus 53 T~~fVk~Le~~G--ft~eQAEai~~al~~ 79 (165)
++.|.+--++-| +|++||+.|+..+++
T Consensus 17 ~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 17 AKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 345555556667 799999999999876
No 222
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.04 E-value=2.2e+02 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccch
Q 031121 133 KLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 133 kL~~ElekLkq~LreEI~kl~a~v 156 (165)
.++.+++.|++++.+|+.++.++.
T Consensus 320 ~l~~qi~~l~~~i~~e~~~~~~~~ 343 (754)
T TIGR01005 320 AAKSSLADLDAQIRSELQKITKSL 343 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666554443
No 223
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.90 E-value=2.1e+02 Score=20.97 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
....+.+++.|...|||-++-..++.
T Consensus 42 d~~~l~~I~~lr~~G~sl~eI~~~l~ 67 (116)
T cd04769 42 HVECLRFIKEARQLGFTLAELKAIFA 67 (116)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 35677899999999999988776654
No 224
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.88 E-value=1.4e+02 Score=28.80 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 64 GVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ 117 (165)
Q Consensus 64 Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~ 117 (165)
||...++++ ..-|+++|.+-++....|+..+.+- -..+.+.+|+.|+.
T Consensus 423 ~~~~d~~~~-~~km~~~i~~~~~~~~sd~~~~rer-----~l~a~t~kL~~E~e 470 (588)
T KOG3612|consen 423 GVHADPTVV-EDKMKDAIIDLQESTLSDYSGSRER-----SLVAATEKLRQEFE 470 (588)
T ss_pred CcccchHHH-HHHHHHHHHHHHHHHHHHhhcCCcc-----chHHHHHHHHHHHH
Confidence 466555543 3445555555566566666554321 12344555555543
No 225
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.83 E-value=4.4e+02 Score=26.15 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 92 FVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 92 lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
=+.|.++...+.+....+.+||.++.. .+.|.+.|+.++|+-++.++.++++
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~-~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQ-KQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344555555566667777788877753 3577788888888888877777664
No 226
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.79 E-value=4.8e+02 Score=25.35 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH--HhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEV--QSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 106 kad~a~LR~Em--~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
++...+||..+ |..--.||..+..|+++|..+|+++..++
T Consensus 314 q~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~ 355 (581)
T KOG0995|consen 314 QKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSEL 355 (581)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454432 44445666677777777766666665543
No 227
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.66 E-value=78 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSELR 146 (165)
Q Consensus 130 e~ekL~~ElekLkq~Lr 146 (165)
|.++++..|..|+.+|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34556666666666654
No 228
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.59 E-value=1.7e+02 Score=25.04 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
||....+|=.|+.. .+.+...|+.|.++|+.|=-+|=.++|+
T Consensus 91 FR~Rn~ELE~elr~-~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 91 FRQRNAELEEELRK-QQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555532 2455667777777777777777666664
No 229
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.55 E-value=1.5e+02 Score=25.12 Aligned_cols=44 Identities=9% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 031121 99 QKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq 143 (165)
.+..-..+.++++||.+++.+ ..++..++.....+-.|||.+-.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~-~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQEN-QYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334577788888888765 35666666666666677776544
No 230
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=31.26 E-value=77 Score=28.48 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.+...|++||++|+.|+.+|++++..
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555543
No 231
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.16 E-value=4.1e+02 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
...+.+++..+... +.....+..+...|+.+++.|++.
T Consensus 336 ~~~i~el~~~i~~~-~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTN-KQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444333 222444444455555555555443
No 232
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.08 E-value=92 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
.|.|.++++.||+.++..+.+-|.
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~ 48 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIE 48 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 233
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=31.02 E-value=1.2e+02 Score=22.39 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=24.4
Q ss_pred HHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
++..+ ++.|++..+|+.+++++-+.+.+.+.
T Consensus 7 li~~ia~~~~l~k~~a~~~v~~~~~~i~~aL~ 38 (94)
T COG0776 7 LIDAIAEKAGLSKKDAEEAVDAFLEEITEALA 38 (94)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555 46679999999999999888877654
No 234
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.02 E-value=1.7e+02 Score=19.76 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~L 145 (165)
+...+|.+....+.|-.+-+++|
T Consensus 25 dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 25 DVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554
No 235
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.66 E-value=2.3e+02 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.5
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+.+.+++.|...|||-++...++.
T Consensus 43 ~l~~l~~I~~lr~~G~sL~eI~~~l~ 68 (126)
T cd04785 43 HVERLRFIRRARDLGFSLEEIRALLA 68 (126)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 46788999999999999998666554
No 236
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.58 E-value=82 Score=21.58 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 113 KSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 113 R~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
|.|+..+ |..++.|...+..|..|-.-||+.
T Consensus 13 rEEVevL-K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVL-KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 445555666666666666666654
No 237
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.46 E-value=2e+02 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.9
Q ss_pred eccHHHHHHHHhh-CCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEA-QGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~-~Gft~eQAEai~~a 76 (165)
.++.+++++.|.. .|||.+....++..
T Consensus 43 dv~~l~~I~~L~~~~G~~l~~i~~~l~l 70 (98)
T cd01279 43 DLELLRQVQRLSQDEGFNLAGIKRIIEL 70 (98)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 4677889999998 99999887777654
No 238
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.40 E-value=1.7e+02 Score=21.32 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.6
Q ss_pred hhhhhhHH
Q 031121 91 TFVSKGEM 98 (165)
Q Consensus 91 ~lvTK~dl 98 (165)
..++-.++
T Consensus 19 GCAs~~kv 26 (85)
T PRK09973 19 GCVNEQKV 26 (85)
T ss_pred HcCCchhH
Confidence 44444443
No 239
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=30.38 E-value=1.2e+02 Score=26.91 Aligned_cols=55 Identities=27% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHH
Q 031121 45 GKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMI 104 (165)
Q Consensus 45 ~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~ 104 (165)
..+..+|--=-+++.|.++|+.+.-|-.|+..+.+-+..+- ..++||+++.+ .|+
T Consensus 9 ~~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~----~~~v~~~eir~-~~~ 63 (299)
T COG2074 9 DKYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEG----IRLVTKDEIRE-VYQ 63 (299)
T ss_pred CcccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCC----CeEeeHHHHHH-HHH
Confidence 45667888888999999999999999999998877665543 47999999877 444
No 240
>PRK14150 heat shock protein GrpE; Provisional
Probab=30.34 E-value=2.3e+02 Score=23.25 Aligned_cols=40 Identities=13% Similarity=0.374 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
+.+|+.++..++. .++...-++++|++..|.+...|+..+
T Consensus 43 i~~l~~~l~~~~~----~~kd~~lR~~AefeN~rkR~~kE~~~~ 82 (193)
T PRK14150 43 IAELEAQLAEAQA----EERDSVLRARAEVENIRRRAEQDVEKA 82 (193)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544443332 344555566666666666666665544
No 241
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=30.24 E-value=3.7e+02 Score=25.11 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=21.2
Q ss_pred HHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSS----QEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 109 ~a~LR~Em~~~----eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+..||+|+... ....+..+..+++....+|.+|..-|.
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~ 274 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYID 274 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44466665432 234556666666666666666655543
No 242
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=30.21 E-value=88 Score=27.27 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.++..||.++++++.+++.++.++.
T Consensus 39 ~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 39 DQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766653
No 243
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=30.20 E-value=1.8e+02 Score=25.38 Aligned_cols=25 Identities=4% Similarity=0.134 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 92 FVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 92 lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
++.|.|+.+..-.+++++..++.-|
T Consensus 212 ~adK~DI~EEl~RL~sHl~~f~~~L 236 (291)
T TIGR00255 212 LAQRIDIAEEIDRLDSHVKEFYNIL 236 (291)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4556666666566666666666554
No 244
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.05 E-value=2.1e+02 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=18.6
Q ss_pred eccHHHHHHHHhhCCCChHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAE 71 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAE 71 (165)
..+.+.+++.|.+.|||-++..
T Consensus 43 ~l~~l~~I~~l~~~G~~l~ei~ 64 (102)
T cd04789 43 DLQRLLLIQQLQAGGLSLKECL 64 (102)
T ss_pred HHHHHHHHHHHHHCCCCHHHHH
Confidence 4678899999999999998743
No 245
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=30.01 E-value=4.8e+02 Score=24.67 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh--------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 97 EMQKTEMIQEANLSKFKSEVQSSQEH--------------------HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 97 dle~~~~~qkad~a~LR~Em~~~eks--------------------efa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
|.+.+.-+.-.++..|+.|++++... ..-.-+.|+..|-+--..|+.+|..||++++.=
T Consensus 411 dveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 411 DVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445556667777788877665321 111222344445555667888899999988753
No 246
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.95 E-value=2.7e+02 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.2
Q ss_pred HHHhhhccccee
Q 031121 7 VVKLVADSGVRV 18 (165)
Q Consensus 7 ~~~~~~~~~~~~ 18 (165)
+|.+--.+|++.
T Consensus 14 lgilli~~gI~~ 25 (191)
T PF04156_consen 14 LGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 247
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.89 E-value=73 Score=21.16 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=15.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLk 142 (165)
+..++.|..||..|+.+++.++
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777655
No 248
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=29.85 E-value=1.8e+02 Score=29.21 Aligned_cols=15 Identities=47% Similarity=0.474 Sum_probs=11.2
Q ss_pred hCCCChHHHHHHHHH
Q 031121 62 AQGVPSKQAEAITAA 76 (165)
Q Consensus 62 ~~Gft~eQAEai~~a 76 (165)
.-|||+.||++|...
T Consensus 412 ~f~lse~Qa~aIl~m 426 (804)
T COG0188 412 RFGLSEKQAEAILDL 426 (804)
T ss_pred HcCCcHHHHHHHHhh
Confidence 457888888888664
No 249
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.71 E-value=2.4e+02 Score=24.72 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=63.1
Q ss_pred ccccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH
Q 031121 20 KSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQ 99 (165)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle 99 (165)
.-.||+|....|..-|+=..-..+.....-.++-..+++-|..-|--+ +|.-|+.+|.+.-.. ..+-|-.||.
T Consensus 108 ~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee~-~a~~iA~~Iv~~R~~------~~~~tt~~L~ 180 (296)
T PRK00050 108 AERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEER-FARRIARAIVEARPK------KPITTTGELA 180 (296)
T ss_pred CcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcc-hHHHHHHHHHHHhcc------CCCCCHHHHH
Confidence 334666665555554443333334444455678889999999999553 688888887654211 2444555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 100 KTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 100 ~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
++.....- .-+.-.- --.--|.+||-+ +-.|++.|+.-|..=..-++.+
T Consensus 181 ~~i~~~~~---~~~~~~h-patr~FQAlRI~---VN~El~~L~~~L~~~~~~L~~g 229 (296)
T PRK00050 181 EIIKSAVP---PRRKGIH-PATRTFQALRIE---VNDELEELERALEAALDLLKPG 229 (296)
T ss_pred HHHHHHcC---ccCCCCC-chHHHHHHHHHH---HHhhHHHHHHHHHHHHHHhcCC
Confidence 44332210 0000000 011235555544 4456666666665555544443
No 250
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=29.63 E-value=49 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.7
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+.+..++.|.+.|||.+++..+.+
T Consensus 42 dv~~l~~i~~l~~~G~sl~~I~~~l~ 67 (69)
T PF13411_consen 42 DVERLREIKELRKQGMSLEEIKKLLK 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHc
Confidence 35667899999999999999877654
No 251
>PRK14127 cell division protein GpsB; Provisional
Probab=29.43 E-value=93 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
...|+.++.+|+..++.++.++.
T Consensus 46 ~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 46 IEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666666666544
No 252
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=29.42 E-value=3e+02 Score=22.63 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=12.2
Q ss_pred CCCCcceeccHHHHHHHHh
Q 031121 43 SNGKRAFLVDTLQLVRGLE 61 (165)
Q Consensus 43 ~~~~~~~~FDT~~fVk~Le 61 (165)
..|...+.+|+..+...|.
T Consensus 49 ~kG~~L~~l~~~~~~~~~~ 67 (322)
T TIGR01730 49 KKGQVLARLDDDDYQLALQ 67 (322)
T ss_pred cCCCEEEEECCHHHHHHHH
Confidence 3445567788877766553
No 253
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.39 E-value=2.3e+02 Score=23.46 Aligned_cols=27 Identities=11% Similarity=0.381 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
.++...-++++|++..+.++..|+..+
T Consensus 58 elkd~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 58 QFKDEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555443
No 254
>PRK11820 hypothetical protein; Provisional
Probab=29.37 E-value=1.9e+02 Score=25.20 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 92 FVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 92 lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
++.|.|+.+....+++++..++.-|
T Consensus 209 ~adK~DI~EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 209 LAQKADIAEELDRLKSHLKEFREIL 233 (288)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555554443
No 255
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.30 E-value=3.1e+02 Score=22.22 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 031121 145 LRYEIDKVT 153 (165)
Q Consensus 145 LreEI~kl~ 153 (165)
..+||+.++
T Consensus 168 ~~~ei~~lk 176 (189)
T PF10211_consen 168 HQEEIDFLK 176 (189)
T ss_pred HHHHHHHHH
Confidence 344444443
No 256
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.26 E-value=49 Score=31.26 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 125 SMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+.|+.|.++|+.+++.|..++ +++.+-.+.-+|.+
T Consensus 34 e~L~kql~~Lk~q~~~l~~~v-~k~e~~s~~d~lk~ 68 (489)
T PF11853_consen 34 EALKKQLEELKAQQDDLNDRV-DKVEKHSAGDNLKF 68 (489)
T ss_pred HHHHHHHHHHHHhhccccccc-chhhHhhhcCcEEE
Confidence 334444444444444433333 34444444444443
No 257
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.10 E-value=2e+02 Score=23.75 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
.++...-++++|++..+.+...|+...
T Consensus 55 elkd~~lR~~Ae~eN~rkR~~rE~~~~ 81 (191)
T PRK14140 55 ELEERYLRLQADFENYKRRIQKENEAA 81 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666554
No 258
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.09 E-value=5.4e+02 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSS 119 (165)
Q Consensus 106 kad~a~LR~Em~~~ 119 (165)
..++.+++.++..+
T Consensus 578 l~~L~~l~e~~~~l 591 (717)
T PF10168_consen 578 LKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 259
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=29.08 E-value=93 Score=24.73 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=27.0
Q ss_pred ceeccHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 031121 48 AFLVDTLQLVRGLEAQGVPSKQAEAITAAITE 79 (165)
Q Consensus 48 ~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~ 79 (165)
.+..|...|...|+.-|||+++++.+.....+
T Consensus 49 K~~l~~~~~~~~L~~l~~~~e~~~~l~~~y~~ 80 (166)
T cd04750 49 KLKLSERDFQDSIEFLGFSDDLNEILLQLYES 80 (166)
T ss_pred hccCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35588999999999999999999999885443
No 260
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.93 E-value=1.8e+02 Score=21.30 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.+.++.+++.|.+.|||-++...++..
T Consensus 42 ~~~~l~~I~~lr~~G~sl~eI~~~l~~ 68 (112)
T cd01282 42 AVDRVRQIRRLLAAGLTLEEIREFLPC 68 (112)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467889999999999999998777654
No 261
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.85 E-value=2.2e+02 Score=20.34 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.|=.+|..++-+....+..+|+--.-+-..++..|+.....+..+-..|++++
T Consensus 46 Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 46 LSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777788888888776544445555666655555555555555544
No 262
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.68 E-value=2.8e+02 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
+.+-..|-+--++++.|.|..+.+|--|+..+.+++
T Consensus 497 rqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f 532 (948)
T KOG0577|consen 497 RQHQKQLLALEERLKGEREEHRARLDRELETLRANF 532 (948)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 344444444455666666666666666666665554
No 263
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=28.65 E-value=94 Score=17.97 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~a 76 (165)
..+++|..-||+++++......
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~ 24 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRA 24 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3578888999998877655443
No 264
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=28.60 E-value=4.4e+02 Score=23.72 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchhhccccc
Q 031121 92 FVSKGEMQKTEMIQ---EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV-----TAGQRLDLNLE 163 (165)
Q Consensus 92 lvTK~dle~~~~~q---kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl-----~a~vrLDlNLE 163 (165)
..+.++++++...+ +..+..+-++|..+...|-...=.....++.+++..=..-++++... -+.-+.|+.|.
T Consensus 19 ~~~~~~l~~~r~~~lgkkg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~l~~e~~d~t~p 98 (339)
T PRK00488 19 ASDLEALEALRVKYLGKKGELTELLKGLGKLPPEERKEAGALINELKQAIEAALEERKEELEAAALNARLAAETIDVTLP 98 (339)
T ss_pred CCCHHHHHHHHHHHhCCchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 34566777665554 57788888887766555444444444444444444333333322222 22233677664
No 265
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.46 E-value=3.1e+02 Score=21.89 Aligned_cols=38 Identities=13% Similarity=0.372 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+...+....+.++.+.+.+...++.|+.+-..+-.-||
T Consensus 171 ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~ 208 (236)
T PF09325_consen 171 EIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDF 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566667777777777777776655544443
No 266
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=2.9e+02 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 031121 133 KLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 133 kL~~ElekLkq~LreEI~kl~a~ 155 (165)
+++..|+..+..+-.+|..+.+.
T Consensus 81 ~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 81 KLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544443
No 267
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=28.41 E-value=1.3e+02 Score=22.39 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031121 132 EKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 132 ekL~~ElekLkq~LreEI~kl 152 (165)
+.|+..+|.+-.+++....+.
T Consensus 46 ~eL~~~FeeIa~RFrk~~~~~ 66 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKKKQ 66 (92)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 455666666666655554443
No 268
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=28.38 E-value=2.7e+02 Score=24.50 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=45.1
Q ss_pred ccccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH
Q 031121 20 KSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQ 99 (165)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle 99 (165)
.-.||+|....|..-|+=..-..+.....-.++-..+.+-|..-|=- ..|..|+.+|.+.-.. ..+-|-.+|.
T Consensus 110 ~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~~i~~~yGEe-~~a~~IA~~Iv~~R~~------~~i~tt~~L~ 182 (305)
T TIGR00006 110 PERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLERILKKYGEE-KFSKRIARAIVERRKK------KPIQTTKELA 182 (305)
T ss_pred CCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHHHHHHHhcCc-chHHHHHHHHHHHHhc------CCCCCHHHHH
Confidence 33466776665555554333333444445568888999999999943 3477777777654321 2445555555
Q ss_pred HHH
Q 031121 100 KTE 102 (165)
Q Consensus 100 ~~~ 102 (165)
++.
T Consensus 183 ~ii 185 (305)
T TIGR00006 183 ELI 185 (305)
T ss_pred HHH
Confidence 543
No 269
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=28.34 E-value=1.4e+02 Score=28.51 Aligned_cols=12 Identities=58% Similarity=0.877 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 031121 141 MRSELRYEIDKV 152 (165)
Q Consensus 141 Lkq~LreEI~kl 152 (165)
||..|.-||.++
T Consensus 609 mr~~lemei~~l 620 (627)
T KOG4348|consen 609 MRSNLEMEIEKL 620 (627)
T ss_pred HHhhhHhhHHHH
Confidence 333444444443
No 270
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=28.32 E-value=1.4e+02 Score=26.50 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=42.6
Q ss_pred ccccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH
Q 031121 20 KSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQ 99 (165)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle 99 (165)
...||+|....|..-|+=.....+.....=.+|-..+++-|...| .+.+|..|+.+|.+.-.. +.+-|-.||.
T Consensus 111 ~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yG-ee~~a~~IA~~Iv~~R~~------~pi~tT~~L~ 183 (310)
T PF01795_consen 111 PERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYG-EEKFARRIARAIVEARKK------KPITTTKELA 183 (310)
T ss_dssp GGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH---TTHHHHHHHHHHHHHH------SS--BHHHHH
T ss_pred CCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcC-chhHHHHHHHHHHHHhCC------CCCCCHHHHH
Confidence 345777776656655555444455555555688999999999999 345688888887765432 3455555555
Q ss_pred HHHH
Q 031121 100 KTEM 103 (165)
Q Consensus 100 ~~~~ 103 (165)
++..
T Consensus 184 ~iI~ 187 (310)
T PF01795_consen 184 EIIE 187 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 271
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.26 E-value=2.1e+02 Score=19.87 Aligned_cols=42 Identities=12% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFS------MLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa------~Lr~e~ekL~~ElekLkq~Lre 147 (165)
...|+.|+.|-+.+.+.+.. .||..+..+-.++..++.++..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888887777666543 5666666666666666555433
No 272
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=28.25 E-value=2.5e+02 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.++-++|-+.+++=+.|+|+++++|
T Consensus 132 asdea~L~~Kierrk~ElEr~rkRl 156 (338)
T KOG3647|consen 132 ASDEAALGSKIERRKAELERTRKRL 156 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888888888888776
No 273
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.22 E-value=2.9e+02 Score=21.62 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 031121 105 QEANLSKFKSE 115 (165)
Q Consensus 105 qkad~a~LR~E 115 (165)
++..+++.|.+
T Consensus 75 ~e~~L~~a~~e 85 (175)
T PRK14472 75 NRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 274
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=28.17 E-value=2.5e+02 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.1
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.++.+.+++.|...|||-++-..++.
T Consensus 43 ~~~~l~~I~~lr~~G~sL~eI~~~l~ 68 (127)
T cd01108 43 DIEELRFIRRARDLGFSLEEIRELLA 68 (127)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47789999999999999988776654
No 275
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=28.04 E-value=2.7e+02 Score=25.29 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=48.7
Q ss_pred hCC-C-ChHHHHHHHHHHHHHHHhhHHHHhhhhhh-hhHHHH---HHHHHHHHHHHHHHHHHhh-------hhh-hhhhh
Q 031121 62 AQG-V-PSKQAEAITAAITEVLNDSLENVAHTFVS-KGEMQK---TEMIQEANLSKFKSEVQSS-------QEH-HFSML 127 (165)
Q Consensus 62 ~~G-f-t~eQAEai~~al~~vl~~~le~~~~~lvT-K~dle~---~~~~qkad~a~LR~Em~~~-------eks-efa~L 127 (165)
+.| | +.+|||.-|..+..+ .+.+-.+..+|.| |+.+.. ..--+++.+..||++|..- .++ ..++.
T Consensus 208 kngvfdp~~qaevq~~Lvs~L-e~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~q 286 (372)
T COG3524 208 KNGVFDPKAQAEVQMSLVSKL-EDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQ 286 (372)
T ss_pred hcCccChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHH
Confidence 346 4 568999999888875 3334444444433 111100 1223577788888877422 112 55667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031121 128 QRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~LreEI 149 (165)
-+|.++|-.|-+=-.+.+..-+
T Consensus 287 aAefq~l~lE~~fAekay~AAl 308 (372)
T COG3524 287 AAEFQRLYLENTFAEKAYAAAL 308 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766665555554433
No 276
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=27.93 E-value=2.8e+02 Score=26.10 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHH
Q 031121 65 VPSKQAEAITAAITE 79 (165)
Q Consensus 65 ft~eQAEai~~al~~ 79 (165)
++-.|||+|+..+..
T Consensus 122 ~DLtqAEai~dLI~A 136 (454)
T COG0486 122 LDLTQAEAIADLIDA 136 (454)
T ss_pred ccHHHHHHHHHHHhC
Confidence 445899999887543
No 277
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=27.68 E-value=2.6e+02 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=21.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.|++.|.+.|||-++-..++.
T Consensus 43 di~~l~~I~~lr~~G~sL~eI~~~l~ 68 (142)
T TIGR01950 43 VLRRVAVIKAAQRVGIPLATIGEALA 68 (142)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46678999999999999988555554
No 278
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=27.62 E-value=2.2e+02 Score=22.57 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 102 EMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 102 ~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
++...++-..|..||.-.-..-+..+....++|+++.+.|+++.
T Consensus 48 e~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~ 91 (153)
T PF08287_consen 48 EPDLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRREETLKAKC 91 (153)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677778766666667777777888888888888764
No 279
>PHA00727 hypothetical protein
Probab=27.59 E-value=2.1e+02 Score=24.55 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
+|=-.||.=-..-|+.||.-...+.++|+.|+++-+.+.+.|-
T Consensus 35 ~dgk~lkrlykvyekrefelk~~qf~qlkael~kkkkk~kkek 77 (278)
T PHA00727 35 ADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77 (278)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444566667788999999999999999999999999887663
No 280
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.53 E-value=3.2e+02 Score=22.32 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~ 144 (165)
..|+.....|+..++.++.+
T Consensus 116 ~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 116 AKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 281
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.42 E-value=6.1e+02 Score=25.02 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFV 93 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lv 93 (165)
.++.+.|...-.+..++-+..+++..+..+|-.....+|=
T Consensus 16 ~K~~kiL~~~~~~dkd~~~aL~~ls~~~~eN~~~~RRnLr 55 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDKDALAALRALSTFFEENSLRARRNLR 55 (655)
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhHHHHhhhh
Confidence 6888899999999999999999999999998887766663
No 282
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=27.39 E-value=4.4e+02 Score=23.36 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 91 TFVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 91 ~lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
-+++|+|+.+..-..+++++++|.-+
T Consensus 210 l~a~K~DI~EEldRL~sHv~~~~~iL 235 (290)
T COG1561 210 LLAQKADIAEELDRLKSHVKEFRNIL 235 (290)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777777655
No 283
>PRK14162 heat shock protein GrpE; Provisional
Probab=27.36 E-value=2.4e+02 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSELRYE 148 (165)
Q Consensus 133 kL~~ElekLkq~LreE 148 (165)
++++|++..+.+...|
T Consensus 64 R~~AEfeN~rkR~~kE 79 (194)
T PRK14162 64 RSQAEIQNMQNRYAKE 79 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 284
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.31 E-value=3.6e+02 Score=22.36 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIE 139 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~Ele 139 (165)
+..+..|+.....+++ ..+.++.+.+.|..+++
T Consensus 62 ~~e~e~L~~~~~~l~~-~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 62 EREIENLEVYNEQLER-QVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4445555444433322 23344444444444433
No 285
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.21 E-value=3.2e+02 Score=21.66 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=20.4
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|...|||-+....+..
T Consensus 44 dl~rL~~I~~lr~~G~sL~eI~~ll~ 69 (172)
T cd04790 44 DLERLEQICAYRSAGVSLEDIRSLLQ 69 (172)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 36678999999999999887555443
No 286
>PF02993 MCPVI: Minor capsid protein VI; InterPro: IPR004243 This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. Residues at the C-terminal end of the protein may act as a protease cofactor leading to activation of the adenovirus proteinase [].; GO: 0019028 viral capsid; PDB: 1AVP_B.
Probab=27.00 E-value=21 Score=30.67 Aligned_cols=73 Identities=23% Similarity=0.374 Sum_probs=0.0
Q ss_pred hhhcccceeecccc--c---cccCCCCCccceecccccCCCCcceeccHHHHH-HHHhhCCCChHHHHHHHHHHHHHHH
Q 031121 10 LVADSGVRVTKSQG--F---NLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLV-RGLEAQGVPSKQAEAITAAITEVLN 82 (165)
Q Consensus 10 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fV-k~Le~~Gft~eQAEai~~al~~vl~ 82 (165)
.++-++||++.--| | ++.++-+++-++|-.+...-+.+...-.|-+.. +.|+..||-+.-++.+...|..+++
T Consensus 14 ~~~w~~IGtS~l~GGafNWgsLwS~is~glkn~Gs~l~n~g~k~wnS~tgq~lrq~LkDsg~~~kVv~g~~~gi~g~vD 92 (238)
T PF02993_consen 14 MGTWSDIGTSELRGGAFNWGSLWSSISSGLKNFGSFLKNYGSKAWNSQTGQQLRQGLKDSGLQEKVVEGAGSGINGLVD 92 (238)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cccccccccccccCcccccccchhhhhhhhhhHhHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHH
Confidence 56678999983333 3 344445567888888898888888887787654 5789999999999888888777653
No 287
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.92 E-value=7.3e+02 Score=25.75 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
.+....+.+..+++..++++.+++..+..
T Consensus 729 ~~d~~i~~i~~~i~~~~~~~~~~~~~le~ 757 (1201)
T PF12128_consen 729 ELDEQIEQIKQEIAAAKQEAKEQLKELEQ 757 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554443
No 288
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=26.88 E-value=1.6e+02 Score=20.19 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhh
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHT 91 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~ 91 (165)
...+-|+..||..-+..+ .+.+++++..-+..+.+.
T Consensus 11 ~Vaqil~~~Gf~~~~~sa-le~ltdi~~~yl~~l~~~ 46 (77)
T smart00576 11 AVAQILESAGFDSFQESA-LETLTDILQSYIQELGRT 46 (77)
T ss_pred HHHHHHHHcCccccCHHH-HHHHHHHHHHHHHHHHHH
Confidence 467889999998877544 567777776665544333
No 289
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.70 E-value=2.3e+02 Score=19.77 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.|+-|+-++.-+ +.+-..|..+++.|+.+.++|++.
T Consensus 19 ti~~Lq~e~eeL-ke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 19 TIALLQMENEEL-KEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466677776555 334455556667777777666654
No 290
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=26.68 E-value=12 Score=26.96 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 031121 53 TLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETE 132 (165)
Q Consensus 53 T~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~e 132 (165)
.-.|.+.| .|+|++|...| +-++.-+..-. --.+....-...+..|..++..+ +.+...|+.++.
T Consensus 11 v~efn~~L--~~lt~~q~~~l-K~~RRr~KNR~-----------~A~~cR~rk~~~~~~Le~e~~~l-~~~~~~L~~e~~ 75 (92)
T PF03131_consen 11 VREFNRLL--RGLTEEQIAEL-KQRRRRLKNRG-----------YAQNCRKRKLDQIEELEEEIEQL-RQEIEQLQQELS 75 (92)
T ss_dssp HHHHHHHC--TTS-HHHHHHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCC
T ss_pred HHHHHHHH--HcCCHHHHHHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34577777 89999997766 33444332211 00111111123445555555544 344556666666
Q ss_pred HHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSE 144 (165)
Q Consensus 133 kL~~ElekLkq~ 144 (165)
.++.+++.++++
T Consensus 76 ~l~~e~~~lk~~ 87 (92)
T PF03131_consen 76 ELRQERDELKRK 87 (92)
T ss_dssp HHHHCCCCCCCC
T ss_pred HHHHHHHHHHHH
Confidence 666555544443
No 291
>PRK14158 heat shock protein GrpE; Provisional
Probab=26.67 E-value=2.5e+02 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 128 QRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~LreEI~k 151 (165)
+...-++++|++..+.++..|+..
T Consensus 60 ~d~~lR~~AefeN~RkR~~kE~e~ 83 (194)
T PRK14158 60 WDKYLRERADLENYRKRVQKEKEE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555444444443
No 292
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=26.58 E-value=3.3e+02 Score=24.11 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=38.8
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 96 GEMQKTEMIQE--ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 96 ~dle~~~~~qk--ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
+.++++.-.+. ..+.+||..+...=...+..+|...+.+..+.+-+++-|++--.|.+
T Consensus 256 ~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~~kA~ 315 (332)
T PRK12556 256 EEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERAR 315 (332)
T ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 33444444443 34668888887777777888888888888887777777665544443
No 293
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=26.55 E-value=3e+02 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=11.1
Q ss_pred HHHhhHHHHhhhhhhhhH
Q 031121 80 VLNDSLENVAHTFVSKGE 97 (165)
Q Consensus 80 vl~~~le~~~~~lvTK~d 97 (165)
-+..+...++.+++.|+.
T Consensus 66 ~~~~~~~elA~dIi~kak 83 (144)
T PF11221_consen 66 EFEENIKELATDIIRKAK 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555556667777775
No 294
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.54 E-value=2.6e+02 Score=23.17 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 125 SMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
..++...-++++|++..|.+...|+..+
T Consensus 62 ~el~d~~lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 62 QEYLDIAQRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555443
No 295
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=26.47 E-value=1.4e+02 Score=21.27 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhh
Q 031121 58 RGLEAQGVPSKQAEAITAAITEVLNDSLENVAH 90 (165)
Q Consensus 58 k~Le~~Gft~eQAEai~~al~~vl~~~le~~~~ 90 (165)
..|+..||+.++...+.-++.+++.+.+++.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~lav~E~~~Nav~H~~~ 49 (125)
T PF13581_consen 17 EFLERLGLPEEDRDDLELAVSEALTNAVEHGYP 49 (125)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345778999999999999999999988887654
No 296
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.39 E-value=3.4e+02 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSD 137 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~E 137 (165)
...|.+|..|+..+ |.+.++.++|+++|...
T Consensus 33 ~~~i~~l~~elk~~-~~~~~~~~~e~~rl~~~ 63 (717)
T PF09730_consen 33 QQRILELENELKQL-RQELSNVQAENERLSQL 63 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455666665544 45566666666665443
No 297
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.22 E-value=4e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=28.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
+.|+.......+..+.+.+.+...++.|+.+-.-+=..||
T Consensus 165 ~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~df 204 (234)
T cd07664 165 KDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDF 204 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777788888888888888887765544444
No 298
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=26.13 E-value=1.2e+02 Score=20.11 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHhhC-CCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHH
Q 031121 58 RGLEAQ-GVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKT 101 (165)
Q Consensus 58 k~Le~~-Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~ 101 (165)
..|+.- |+++.+|+.|++-=... ..+.+.+|+.+.
T Consensus 14 ~eL~~lpgi~~~~A~~Iv~~R~~~---------G~f~s~~dL~~v 49 (65)
T PF12836_consen 14 EELQALPGIGPKQAKAIVEYREKN---------GPFKSLEDLKEV 49 (65)
T ss_dssp HHHHTSTT--HHHHHHHHHHHHHH----------S-SSGGGGGGS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhC---------cCCCCHHHHhhC
Confidence 456666 99999999998853322 356677776543
No 299
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.96 E-value=93 Score=25.25 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.||.|...|+.|+ .++++++
T Consensus 35 RLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 35 RLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHH-HHHHHhh
Confidence 3344444444444 4444443
No 300
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=25.94 E-value=2.2e+02 Score=20.04 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=20.6
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHHhh
Q 031121 59 GLEAQGVPSKQAEAITAAITEVLNDS 84 (165)
Q Consensus 59 ~Le~~Gft~eQAEai~~al~~vl~~~ 84 (165)
-|+..||+.++=.+|-.+.+.+...+
T Consensus 22 GLrR~Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 22 GLRRRGFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999888887654
No 301
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.89 E-value=4.2e+02 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 031121 91 TFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRS 136 (165)
Q Consensus 91 ~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ 136 (165)
.+.+..++.+..-.+|..++++.... .+...|+.||.+|+.
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~-----~~~~~l~~EN~~Lr~ 104 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLL-----EEVESLEEENKRLKE 104 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 44444444443333444444443333 223344444444443
No 302
>cd04758 Commd10 COMM_Domain containing protein 10. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=25.79 E-value=1.9e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=24.6
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~ 83 (165)
-.|--.+...|++-|++++.|+++..+...--..
T Consensus 72 nl~~~~L~~~L~~l~l~~e~~~~~~~~w~~~~~~ 105 (186)
T cd04758 72 NLKPSNLQQQLRNILLLEDKASAFVNAWEAEGED 105 (186)
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555667788888888888888887776654433
No 303
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.78 E-value=2.4e+02 Score=26.73 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031121 134 LRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 134 L~~ElekLkq~LreEI~k 151 (165)
.+.|.++|.-+|..|+.+
T Consensus 290 ~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 290 HREENERLQRKLINELER 307 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 304
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.69 E-value=2.6e+02 Score=22.94 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSELRYEI 149 (165)
Q Consensus 133 kL~~ElekLkq~LreEI 149 (165)
+++.|++..+.++..|+
T Consensus 57 R~~AefeN~rKR~~kE~ 73 (185)
T PRK14139 57 RAKAETENVRRRAQEDV 73 (185)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 305
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.64 E-value=3.2e+02 Score=21.11 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 031121 106 EANLSKFKS 114 (165)
Q Consensus 106 kad~a~LR~ 114 (165)
+..+++.|.
T Consensus 80 e~~L~~A~~ 88 (156)
T CHL00118 80 EQELSKARK 88 (156)
T ss_pred HHHHHHHHH
Confidence 333444443
No 306
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.61 E-value=3.9e+02 Score=22.14 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=51.1
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHH------HHHHHHHHHHHHHHHHHhhhhhhhh
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQK------TEMIQEANLSKFKSEVQSSQEHHFS 125 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~------~~~~qkad~a~LR~Em~~~eksefa 125 (165)
|+..-+..+ -.+|++.+-..+.+-+..-...+ -..|.++.. -...++....++|. -...++.+++
T Consensus 68 e~~~~i~d~-----~q~qv~~l~~~v~epLk~Y~~l~---k~~k~~~K~~~~ar~~~~~~~~~leklk~-~~~~d~~~i~ 138 (211)
T cd07598 68 ECLAALQDY-----RQAEVERLEAKVVQPLALYGTIC---KHARDDLKNTFTARNKELKQLKQLEKLRQ-KNPSDRQIIS 138 (211)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 455544443 45677777666666555433322 122333311 11112334444431 1112344555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
...++..+.+.|.++..+.|++||.+-.-+
T Consensus 139 eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~ 168 (211)
T cd07598 139 QAESELQKASVDANRSTKELEEQMDNFEKQ 168 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788889999999999998875443
No 307
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=25.61 E-value=1.2e+02 Score=21.10 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=23.1
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITAAITEVL 81 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~al~~vl 81 (165)
+=||.+|+-||.-|+-+.-.-.+++.+....
T Consensus 13 ~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa 43 (67)
T PF08498_consen 13 FITHALVRVLEFLGLAPKGTSKVAEMLAKAA 43 (67)
T ss_pred HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 4589999999999987766666666555543
No 308
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.55 E-value=2.5e+02 Score=19.89 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=21.2
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+..+.+++.|.+.|||-++...+..
T Consensus 43 ~l~~l~~I~~lr~~G~~l~eI~~~l~ 68 (96)
T cd04788 43 DIRRLHQIIALRRLGFSLREIGRALD 68 (96)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46777999999999999988766543
No 309
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.46 E-value=1.8e+02 Score=20.50 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq 143 (165)
+...++.|+++|+-|+..+..
T Consensus 50 ~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 50 EIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 335666777777777777665
No 310
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=25.43 E-value=84 Score=20.22 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=19.7
Q ss_pred eccHHHHHHHHhhCCCChHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai 73 (165)
.++.+..++.|.+.|||.+++..+
T Consensus 43 ~v~~l~~i~~l~~~g~~l~~i~~~ 66 (68)
T cd01104 43 DVARLRLIRRLTSEGVRISQAAAL 66 (68)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHH
Confidence 356788899999999999887654
No 311
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.41 E-value=4.7e+02 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=15.0
Q ss_pred cceecccccC--CCCcceeccHH--HHHHHHh
Q 031121 34 YRQISQLVKS--NGKRAFLVDTL--QLVRGLE 61 (165)
Q Consensus 34 ~~~~s~~~~~--~~~~~~~FDT~--~fVk~Le 61 (165)
|...|+.-.| .+...+.||++ ++.+.||
T Consensus 597 ysra~~kqq~~l~~~~k~~lD~~f~kL~kele 628 (970)
T KOG0946|consen 597 YSRASMKQQPQLKSNTKLALDFEFKKLFKELE 628 (970)
T ss_pred HHHHhhccCccCCCCchhhhhHHHHHHHHHHH
Confidence 4444554444 23456789987 4444443
No 312
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.40 E-value=2.9e+02 Score=21.77 Aligned_cols=40 Identities=15% Similarity=0.451 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQR---ETEKLRSDIEKMRSELR 146 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~---e~ekL~~ElekLkq~Lr 146 (165)
...+..++++|.... .++..|+. .++.|+.+|+.|++...
T Consensus 26 ~~e~~~~k~ql~~~d-~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEAD-KQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 456667777775543 44666666 66777777777776665
No 313
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=25.24 E-value=3.8e+02 Score=21.86 Aligned_cols=62 Identities=10% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHh------hHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLND------SLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~------~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
...+.+++.|-+.+-.-.....+.++.+. -...+..++|+...++...-.+.-++.++|..+
T Consensus 91 ~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 91 DLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788887776554566666665431 111233445555555555555555555555444
No 314
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.22 E-value=2.8e+02 Score=28.98 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+..|-.||.||..-- ...-.||.|.+.+..|+++|+|...+
T Consensus 183 e~kir~LrqElEEK~-enll~lr~eLddleae~~klrqe~~e 223 (1195)
T KOG4643|consen 183 EKKIRTLRQELEEKF-ENLLRLRNELDDLEAEISKLRQEIEE 223 (1195)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666664221 22446788888899999988887543
No 315
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=25.17 E-value=2.4e+02 Score=24.36 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~LreEI 149 (165)
|..|..+-..-.++.+.+|+++-
T Consensus 65 L~~E~~~h~~~~~~v~~~L~~~k 87 (298)
T PF11262_consen 65 LPEELKKHQEHVEKVKKRLQEEK 87 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444443
No 316
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.09 E-value=6.3e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 031121 66 PSKQAEAITAAITEVLND 83 (165)
Q Consensus 66 t~eQAEai~~al~~vl~~ 83 (165)
+..+++.+.+-++++.+.
T Consensus 302 Sqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666555443
No 317
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=24.98 E-value=74 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=19.8
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+..+..|...|||.+++..+.+
T Consensus 45 ~~l~~i~~lr~~g~~~~~i~~~l~ 68 (70)
T smart00422 45 ERLRFIKRLKELGFSLEEIKELLE 68 (70)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 455789999999999999887765
No 318
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.94 E-value=2.5e+02 Score=20.14 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
++-.|+..|..+ -+.+..++.|+++|..|=+-|.+-
T Consensus 24 ei~~LQ~sL~~L-~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 24 EILELQDSLEAL-SDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555433 233445555555555554444443
No 319
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.85 E-value=6e+02 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
..+..+.++|+.++.++...|
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444433
No 320
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=24.83 E-value=1.2e+02 Score=19.32 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.6
Q ss_pred hCCCChHHHHHHHHHHHHHHHhhH
Q 031121 62 AQGVPSKQAEAITAAITEVLNDSL 85 (165)
Q Consensus 62 ~~Gft~eQAEai~~al~~vl~~~l 85 (165)
..|.|.+|-..+++++.+++...+
T Consensus 9 ~~grt~eqK~~l~~~it~~l~~~l 32 (63)
T TIGR00013 9 KEGRTDEQKRQLIEGVTEAMAETL 32 (63)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999987765
No 321
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=24.82 E-value=93 Score=27.90 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
..+.|++.|+++++|+.+++++.+.
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~Lv~A 36 (349)
T PRK15025 12 IKNKLCKAGLKREHAATVAEVLVYA 36 (349)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566789999999999999998765
No 322
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=24.81 E-value=5.1e+02 Score=23.19 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHH
Q 031121 58 RGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQK 100 (165)
Q Consensus 58 k~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~ 100 (165)
-+|+..--+.+-=|+=++..+--+...+.-.-...+||.|++-
T Consensus 77 SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlel 119 (305)
T PF14915_consen 77 SKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLEL 119 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Confidence 3444444455555666666666566555555567888888754
No 323
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=24.78 E-value=93 Score=27.62 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
..+.|++.|+++++|+.+++.+.+.
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~Lv~a 36 (332)
T PRK13260 12 FKRVLLSRGVDEETADACAEMFART 36 (332)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4466799999999999999998765
No 324
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.74 E-value=2.4e+02 Score=23.69 Aligned_cols=16 Identities=13% Similarity=0.538 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSELRYE 148 (165)
Q Consensus 133 kL~~ElekLkq~LreE 148 (165)
++++|++..|.+...|
T Consensus 77 Rl~ADfeNyRKR~~kE 92 (208)
T PRK14154 77 RAQAEMDNLRKRIERE 92 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 325
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=24.72 E-value=2.3e+02 Score=19.18 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhHHHHhhh
Q 031121 71 EAITAAITEVLNDSLENVAHT 91 (165)
Q Consensus 71 Eai~~al~~vl~~~le~~~~~ 91 (165)
|..+..+.+.+++-+..+...
T Consensus 20 ee~l~~~a~~i~~~i~~~~~~ 40 (89)
T PF05164_consen 20 EEYLRKAAELINEKINEIKKK 40 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555566666655444
No 326
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.56 E-value=2.9e+02 Score=20.29 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031121 131 TEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 131 ~ekL~~ElekLkq~LreEI~kl 152 (165)
...++.+|+++++.++.+..+.
T Consensus 53 ~~~~~~~l~~~~~~lk~~r~~~ 74 (106)
T PF05837_consen 53 DEELSEKLEKLEKELKKSRQRW 74 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776654
No 327
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=24.52 E-value=5.2e+02 Score=24.37 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=42.8
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 54 LQLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116 (165)
Q Consensus 54 ~~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em 116 (165)
.+-++.|.+.| ++++.++.|..++.++..+..+ ..+.-+.+.|......+..+.+.=.|+
T Consensus 40 ~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~---g~~~~~~~~EDvH~aiE~~L~~~iG~~ 100 (459)
T COG0165 40 IAHAKMLAKQGIITEEEAAKILEGLEELLEEIRA---GKFELDPDDEDVHTAIEARLIERIGDV 100 (459)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhc---CCccCCCccccHHHHHHHHHHHHHhhh
Confidence 47889999999 8999999999999998876332 135556666666666665555443333
No 328
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=24.45 E-value=1.9e+02 Score=19.21 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=14.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVL 81 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl 81 (165)
.+++.+++. +.+||+.+-..+...+
T Consensus 6 ~LA~~feqk--skeqa~ste~~vk~af 30 (52)
T PF04837_consen 6 NLAKDFEQK--SKEQAESTEQMVKNAF 30 (52)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 455555555 5666666655555444
No 329
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.30 E-value=2.5e+02 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~ 150 (165)
..-++++|++..+.++..|+.
T Consensus 40 ~~lR~~Ad~eN~rkR~~kE~e 60 (172)
T PRK14147 40 DALRERADLENQRKRIARDVE 60 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 330
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=24.30 E-value=92 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=19.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
..+-|++.|+++++|+.+++.+.+.
T Consensus 12 ~~~il~~~G~~~~~A~~vA~~Lv~A 36 (335)
T PF02615_consen 12 VTDILQAAGVSEEDAEIVADVLVEA 36 (335)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456799999999999999998775
No 331
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.29 E-value=65 Score=21.10 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 031121 132 EKLRSDIEK 140 (165)
Q Consensus 132 ekL~~Elek 140 (165)
++++.|+++
T Consensus 58 ~~le~e~~~ 66 (68)
T PF06305_consen 58 KKLEKELEQ 66 (68)
T ss_pred HHHHHHHHh
Confidence 344444443
No 332
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.29 E-value=3.9e+02 Score=21.66 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.7
Q ss_pred hCCCCh
Q 031121 62 AQGVPS 67 (165)
Q Consensus 62 ~~Gft~ 67 (165)
..|+-+
T Consensus 53 ~~gIcp 58 (189)
T PF10211_consen 53 ETGICP 58 (189)
T ss_pred cccccH
Confidence 345433
No 333
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=24.28 E-value=4.7e+02 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 94 SKGEMQKTEMIQEANLSKFKSEVQSS 119 (165)
Q Consensus 94 TK~dle~~~~~qkad~a~LR~Em~~~ 119 (165)
+-+|+..+....++.+..++.+++.+
T Consensus 955 s~Ed~kkLhaE~daeLe~~~ael~el 980 (1424)
T KOG4572|consen 955 SEEDKKKLHAEIDAELEKEFAELIEL 980 (1424)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554444
No 334
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.16 E-value=2.9e+02 Score=26.18 Aligned_cols=14 Identities=0% Similarity=0.183 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhh
Q 031121 106 EANLSKFKSEVQSS 119 (165)
Q Consensus 106 kad~a~LR~Em~~~ 119 (165)
....++|.++|..+
T Consensus 75 Q~kasELEKqLaaL 88 (475)
T PRK13729 75 QVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 335
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=23.92 E-value=98 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
..+.|++.|+++++|+.+++++.+.
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~Lv~A 36 (349)
T TIGR03175 12 IKQKLYKAGLKREHAAIVADVLTFA 36 (349)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999998775
No 336
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.71 E-value=5.4e+02 Score=23.08 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhh
Q 031121 71 EAITAAITEVLNDSLENVAHTFVSK 95 (165)
Q Consensus 71 Eai~~al~~vl~~~le~~~~~lvTK 95 (165)
......+.++...+++.+.+.++..
T Consensus 196 ~ey~~~~~~~~~ks~e~~~~~l~~~ 220 (320)
T TIGR01834 196 ADYQLLEADIGYKSFAALMSDLLAR 220 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555555555553
No 337
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.66 E-value=3.6e+02 Score=21.05 Aligned_cols=11 Identities=9% Similarity=-0.085 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 031121 104 IQEANLSKFKS 114 (165)
Q Consensus 104 ~qkad~a~LR~ 114 (165)
+++..++.-+.
T Consensus 66 ~~e~~L~~A~~ 76 (167)
T PRK14475 66 DVKAEREEAER 76 (167)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 338
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.54 E-value=2.8e+02 Score=19.72 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=22.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
+|+..+|.-.-.|-..--++|+.--+||.+++..
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666677777777888887764
No 339
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.52 E-value=2e+02 Score=27.82 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcc
Q 031121 101 TEMIQEANLSKFKSEVQS-SQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDL 160 (165)
Q Consensus 101 ~~~~qkad~a~LR~Em~~-~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDl 160 (165)
.+-..+..|..+..++.. ..++.-.-+...+++|+.|++.+++..+.++..+..++.+.|
T Consensus 431 ~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em 491 (588)
T KOG3612|consen 431 VEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEM 491 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH
Confidence 334456677777666532 233444567888888999999888888888876666665544
No 340
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=23.52 E-value=2.2e+02 Score=19.26 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTF 92 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~l 92 (165)
....+-|+..||+..+..+ .+.+++++..-+..+....
T Consensus 10 ~~va~il~~~GF~~~~~~a-l~~Ltdi~~~yl~~l~~~~ 47 (77)
T PF07524_consen 10 RSVAQILKHAGFDSASPSA-LDTLTDILQRYLQELGRTA 47 (77)
T ss_pred HHHHHHHHHcCccccCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3467788999998877665 6777777776665544443
No 341
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=23.50 E-value=1.3e+02 Score=24.63 Aligned_cols=31 Identities=29% Similarity=0.140 Sum_probs=24.9
Q ss_pred eeccHHHHHHHH-----hhCCCChHHHHHHHHHHHH
Q 031121 49 FLVDTLQLVRGL-----EAQGVPSKQAEAITAAITE 79 (165)
Q Consensus 49 ~~FDT~~fVk~L-----e~~Gft~eQAEai~~al~~ 79 (165)
+-.|-..+-..| +..|+|.+||.+|++....
T Consensus 54 ~dvD~~~L~~~Lt~q~~qQ~Gl~~eha~~l~Kfwk~ 89 (174)
T cd04749 54 ADMDINQLEAFLTAQTKKQGGITSLQAAVIAKFWKV 89 (174)
T ss_pred ccCCHHHHHHHHHhhHHHhcCCChHHHHHHHHHHHH
Confidence 446778888888 8889999999988886543
No 342
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=23.47 E-value=2.9e+02 Score=21.84 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
+.++-|.+-++.-.++|-+..
T Consensus 98 s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 98 SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555555443
No 343
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.36 E-value=1.6e+02 Score=21.77 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=23.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
+.+...|+.++.+|+-|.+.|+.-+...=.+-...+
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~~~~ 112 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAH 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Confidence 344567777778888888888877655444433333
No 344
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.27 E-value=5.1e+02 Score=22.91 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=9.8
Q ss_pred CcceeccHHHHHHHHhh
Q 031121 46 KRAFLVDTLQLVRGLEA 62 (165)
Q Consensus 46 ~~~~~FDT~~fVk~Le~ 62 (165)
+-.+..|.-.+--.|+.
T Consensus 91 qvLa~ld~~~~~~~l~~ 107 (397)
T PRK15030 91 VSLYQIDPATYQATYDS 107 (397)
T ss_pred CEEEEECCHHHHHHHHH
Confidence 33355777777655543
No 345
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.21 E-value=3.8e+02 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 128 QRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
+....++..|..++-..|.+|..+.++
T Consensus 154 k~~~~~~EkE~~K~~~~l~eE~~k~K~ 180 (192)
T PF09727_consen 154 KAQQKKLEKEHKKLVSQLEEERTKLKS 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777778888888888888764
No 346
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=23.17 E-value=1.9e+02 Score=20.74 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHHhhH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEVLNDSL 85 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~vl~~~l 85 (165)
+++.--..|||+.|+-..+-++++++-+.+
T Consensus 73 lsr~RA~Qgftpseta~fvf~LK~~l~~~l 102 (105)
T PF14361_consen 73 LSRIRAVQGFTPSETASFVFALKRPLFERL 102 (105)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445555789999999999999999886644
No 347
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=23.10 E-value=5.3e+02 Score=22.77 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=37.4
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ 117 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~ 117 (165)
|--.--+-...+|+|++.+.++-+++.++... +..--+++..|..+. .-.|-..|-.+|.+|+
T Consensus 13 ~~eaw~~~~~~~~l~rde~d~l~~~L~~l~~~-~~~~d~~~~~~~~~~--~~~FL~~Fp~~k~~Le 75 (313)
T PF05461_consen 13 EDEAWERFVAEAELSRDEADALREALKELTED-MDSEDKDRSQKDQQD--RERFLKEFPQLKEELE 75 (313)
T ss_pred hHHHHHHHHHhccCchhhHHHHHHHHHHHHhh-hhccccchhHHHHHH--HHHHHHHhHHHHHHHH
Confidence 33344455568899999999999998887654 322233444443321 2234455666666663
No 348
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.09 E-value=5e+02 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~L 145 (165)
.+..+.+++..++..|+..+
T Consensus 386 ~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 386 ELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 349
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=23.05 E-value=1e+02 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.6
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 57 VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 57 Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+.|++.|+++++|+.+++.+...
T Consensus 6 ~~~l~~~G~~~~~A~~vA~~Lv~a 29 (330)
T PLN00105 6 RKAIKTYGYDDEDAEVLLDVMMYA 29 (330)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456789999999999999988764
No 350
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=22.92 E-value=3.1e+02 Score=20.10 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRL 158 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrL 158 (165)
.......+.+..+.+.+.+...+..++..+......
T Consensus 129 ~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~ 164 (194)
T cd07307 129 KLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKE 164 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456667777888888888888888888888776553
No 351
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.82 E-value=2.4e+02 Score=23.51 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSELRYEI 149 (165)
Q Consensus 133 kL~~ElekLkq~LreEI 149 (165)
+++.|++..|.+...|+
T Consensus 38 R~~AefeN~RKR~~kE~ 54 (208)
T PRK14155 38 RYAAEAENTKRRAEREM 54 (208)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 352
>PRK11637 AmiB activator; Provisional
Probab=22.82 E-value=5.6e+02 Score=22.97 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 031121 145 LRYEIDKV 152 (165)
Q Consensus 145 LreEI~kl 152 (165)
|...|.++
T Consensus 245 L~~~I~~l 252 (428)
T PRK11637 245 LRDSIARA 252 (428)
T ss_pred HHHHHHHH
Confidence 33344433
No 353
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.75 E-value=3.1e+02 Score=19.99 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.7
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
..+.+.+++.|.+.|||-+....++..
T Consensus 43 ~i~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (123)
T cd04770 43 DLARLRFIRRAQALGFSLAEIRELLSL 69 (123)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 467789999999999998887666543
No 354
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.66 E-value=3e+02 Score=23.22 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031121 131 TEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 131 ~ekL~~ElekLkq~LreEI~ 150 (165)
+-+++.|++..|.++..|+.
T Consensus 63 ~lR~~AEfeN~rkR~~kE~e 82 (214)
T PRK14163 63 LQRLQAEYQNYRRRVERDRV 82 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 355
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=22.60 E-value=4.3e+02 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=9.5
Q ss_pred CcceeccHHHHHHHHh
Q 031121 46 KRAFLVDTLQLVRGLE 61 (165)
Q Consensus 46 ~~~~~FDT~~fVk~Le 61 (165)
+-....|+..+-..++
T Consensus 89 q~La~ld~~~~~~~~~ 104 (385)
T PRK09578 89 AVLFRIDPAPLKAARD 104 (385)
T ss_pred CEEEEECCHHHHHHHH
Confidence 3345577777765554
No 356
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=22.59 E-value=3.5e+02 Score=23.84 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
..++-+|..++..-++.-...-+...++.-.+.-+++.+|.+-|.+++
T Consensus 35 ~~~L~~l~~~~~~~d~~~~~~~~~~~~~FL~~Fp~~k~~Le~~I~kL~ 82 (313)
T PF05461_consen 35 REALKELTEDMDSEDKDRSQKDQQDRERFLKEFPQLKEELEEHIRKLR 82 (313)
T ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445555544333332233233344555555555555555555554
No 357
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.57 E-value=2.8e+02 Score=19.46 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 031121 97 EMQKTEMIQEANLSKFKSEVQSS 119 (165)
Q Consensus 97 dle~~~~~qkad~a~LR~Em~~~ 119 (165)
|+...+-..|..|.+.|.-|..+
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~l 47 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIREL 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555556666666666666543
No 358
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.56 E-value=3.2e+02 Score=20.03 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYE 148 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreE 148 (165)
++.||+.-...=...+..|..++..+..|++.|+.+|.-+
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444444555666666666777777766665443
No 359
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.52 E-value=7.1e+02 Score=24.04 Aligned_cols=9 Identities=33% Similarity=0.601 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 031121 109 LSKFKSEVQ 117 (165)
Q Consensus 109 ~a~LR~Em~ 117 (165)
+.+|..|++
T Consensus 373 ie~L~~el~ 381 (546)
T PF07888_consen 373 IEKLSRELQ 381 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 360
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.46 E-value=3.3e+02 Score=26.08 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEV 116 (165)
Q Consensus 105 qkad~a~LR~Em 116 (165)
+...+.+||+|+
T Consensus 592 ~~kel~kl~~dl 603 (627)
T KOG4348|consen 592 HGKELEKLRKDL 603 (627)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 361
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=22.36 E-value=3e+02 Score=19.67 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHH
Q 031121 103 MIQEANLSKFKSEVQSSQEHH-FSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 103 ~~qkad~a~LR~Em~~~ekse-fa~Lr~e~ekL~~ElekLkq 143 (165)
-+++.|+.+|+.=+....|.- -..|..+..+|..||.++++
T Consensus 6 ~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 6 EELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887665544332 34566677777777777665
No 362
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.20 E-value=7.7e+02 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
||..|+.|+.+|.-+++-|++.+-+.|
T Consensus 195 EyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998886654
No 363
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.20 E-value=1.4e+02 Score=21.35 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031121 131 TEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 131 ~ekL~~ElekLkq~LreEI~ 150 (165)
...|..||.+|+.+|.+|+.
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~ 29 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQD 29 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776654
No 364
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.14 E-value=1.8e+02 Score=25.36 Aligned_cols=18 Identities=33% Similarity=0.744 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031121 128 QRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~L 145 (165)
+.+...++.+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 19 EKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 365
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=22.14 E-value=2.5e+02 Score=26.69 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=42.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 89 AHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 89 ~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
.-.-||+.|+.++...|+-.-..||--+..++ ..|..|.+...+|..-|.|+..+|--.+.
T Consensus 278 ~g~~AS~~Dl~~i~~~lmyE~~~Lr~nl~~L~-~~~~~l~~~l~~vI~SvaKiDeRLIG~L~ 338 (498)
T PF03273_consen 278 LGATASKEDLMNIQESLMYENEGLRYNLEQLH-AHFNKLSNMLNTVIQSVAKIDERLIGRLM 338 (498)
T ss_dssp TTS---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTT-TTHHHHHT
T ss_pred cccccCHHHHHHHHHHHHHhchhhHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34478899998888877777777777776663 66888888888888888888877766554
No 366
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.11 E-value=3.3e+02 Score=20.01 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 031121 106 EANLSKF 112 (165)
Q Consensus 106 kad~a~L 112 (165)
+.++.+|
T Consensus 34 ~~~~~~l 40 (106)
T PF10805_consen 34 REDIEKL 40 (106)
T ss_pred HHHHHHH
Confidence 3333333
No 367
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=22.11 E-value=1.4e+02 Score=22.24 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=31.2
Q ss_pred ccHHHHHHHHhh-CCCChH-HHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHH
Q 031121 51 VDTLQLVRGLEA-QGVPSK-QAEAITAAITEVLNDSLENVAHTFVSKGEMQKTE 102 (165)
Q Consensus 51 FDT~~fVk~Le~-~Gft~e-QAEai~~al~~vl~~~le~~~~~lvTK~dle~~~ 102 (165)
||.-.|+.+..+ .|.+.. +|+..+.++-.++.. .++..+++++.
T Consensus 69 ~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l~~--------~v~~ge~~~v~ 114 (125)
T PF10025_consen 69 FDLDEFLARVAERLGGADEDDAERLARAVFAALRE--------AVSEGEFEDVR 114 (125)
T ss_dssp -SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHHHH--------HS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHH--------HCCHHHHHHHH
Confidence 999999999987 776666 999999998888755 45555554443
No 368
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.04 E-value=3.4e+02 Score=20.17 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 031121 106 EANLSKFKSE 115 (165)
Q Consensus 106 kad~a~LR~E 115 (165)
+..+++.|.+
T Consensus 63 e~~L~~a~~e 72 (140)
T PRK07353 63 EQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 369
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=21.89 E-value=1.1e+02 Score=19.99 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.5
Q ss_pred eccHHHHHHHHhhCCCChHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai 73 (165)
..+.+..++.|.+.|||-+++..+
T Consensus 43 di~~l~~i~~l~~~g~~l~~i~~~ 66 (68)
T cd04763 43 DIDRILEIKRWIDNGVQVSKVKKL 66 (68)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 356778899999999999887654
No 370
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=21.79 E-value=3.9e+02 Score=24.89 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=63.9
Q ss_pred ccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHH--HHHHHHHHHHHh
Q 031121 41 VKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQE--ANLSKFKSEVQS 118 (165)
Q Consensus 41 ~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qk--ad~a~LR~Em~~ 118 (165)
|+|.+.....||+-.-+++--..-+|..+..... ...=..|+=.+++-+.+....+++.-.+. ..+.++|..+..
T Consensus 204 SKS~~n~I~L~Ds~~~I~kKI~~A~TDs~~~~~~---~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae 280 (431)
T PRK12284 204 SKSYDNTIPLFAPREELKKAIFSIVTDSRAPGEP---KDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFE 280 (431)
T ss_pred cCCCCCEeeecCCHHHHHHHHhcCCCCCCCCCCC---CCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 4555667778898876666555556532210000 00001233334444444344455444443 245688988877
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 119 SQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 119 ~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.--..+.-+|...+.+..+-+.|+.-|++--.|.+
T Consensus 281 ~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga~kAr 315 (431)
T PRK12284 281 RIDRELAPMRERYEALIARPADIEDILLAGAAKAR 315 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 77788888898888888887777766665544443
No 371
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=21.74 E-value=4.2e+02 Score=21.19 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=5.9
Q ss_pred eeccHHHHHHHH
Q 031121 49 FLVDTLQLVRGL 60 (165)
Q Consensus 49 ~~FDT~~fVk~L 60 (165)
-.+|+-..+...
T Consensus 28 a~vn~~~i~~~~ 39 (170)
T COG2825 28 AIVNLGRIFQES 39 (170)
T ss_pred eeecHHHHHHHc
Confidence 344555555444
No 372
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.71 E-value=2.7e+02 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=33.9
Q ss_pred cceeccHH----HHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHH
Q 031121 47 RAFLVDTL----QLVRGLEAQGVPSKQAEAITAAITEVLNDSLEN 87 (165)
Q Consensus 47 ~~~~FDT~----~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~ 87 (165)
....||-- .|.+.+-+..+|++|.++........++..+..
T Consensus 33 ~iV~fdmk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~ 77 (112)
T TIGR02744 33 VTVAFDMKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQA 77 (112)
T ss_pred eEEEEecHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46678854 688888888999999999999998888887754
No 373
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.68 E-value=3.1e+02 Score=23.02 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 125 SMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
..++...-++++|++..|.+...|+..+.
T Consensus 71 ~el~d~~lR~~AdfeN~rkR~~kE~e~~~ 99 (215)
T PRK14146 71 ESLKDSWARERAEFQNFKRRSAQEFVSIR 99 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666665543
No 374
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.59 E-value=1.5e+02 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.-|.....|++++..+||+|+.+-.-||..++
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~k 479 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRKHKMEISTMK 479 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999998775
No 375
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.54 E-value=3.1e+02 Score=27.69 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
+.+.++|+|++...+-.-..+|.+.+-|-..++.||+.
T Consensus 558 at~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~ 595 (961)
T KOG4673|consen 558 ATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQT 595 (961)
T ss_pred HhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555544445555555455555555544
No 376
>PHA03161 hypothetical protein; Provisional
Probab=21.49 E-value=4.4e+02 Score=21.22 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
...|.+-++|+..+-+-+-..+- ..|.|+--++.|+..|.-|+..+++.
T Consensus 67 ~~~I~~k~kE~~~L~~fd~kkl~-~~E~L~drv~eLkeel~~ELe~l~~~ 115 (150)
T PHA03161 67 DLSIQEKKKELSLLKAFDRHKLS-AAEDLQDKILELKEDIHFEIEALNHG 115 (150)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455566666655544333332 45789999999999999999888754
No 377
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.46 E-value=3.9e+02 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 127 LQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
++...-++++|++.++.++..|+....
T Consensus 55 ~~~~~lr~~Ae~eN~rkR~~re~e~~~ 81 (193)
T COG0576 55 LKDKYLRAQAEFENLRKRTEREREEAK 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677777777777766666543
No 378
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.38 E-value=2.7e+02 Score=18.84 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~Lre 147 (165)
....++++|+..+..|..+|++
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666554
No 379
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.26 E-value=4.9e+02 Score=23.80 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHHHhhccchhh
Q 031121 144 ELRYEIDKVTAGQRL 158 (165)
Q Consensus 144 ~LreEI~kl~a~vrL 158 (165)
.|...|+=+++-++-
T Consensus 264 ~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 264 SLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhhHHHHHHHHH
Confidence 344445555544444
No 380
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.18 E-value=5.8e+02 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQSS 119 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~~~ 119 (165)
++..++.+..-.|+.+|+++++++..+
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l 100 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSL 100 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666555433
No 381
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.17 E-value=2.6e+02 Score=20.89 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=5.5
Q ss_pred HHHHHHhhccc
Q 031121 145 LRYEIDKVTAG 155 (165)
Q Consensus 145 LreEI~kl~a~ 155 (165)
|..||.+++.+
T Consensus 76 l~~ei~~L~dg 86 (117)
T COG2919 76 LEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHhccc
Confidence 44445555554
No 382
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.10 E-value=4.2e+02 Score=20.93 Aligned_cols=9 Identities=22% Similarity=-0.163 Sum_probs=3.9
Q ss_pred HHhhCCCCh
Q 031121 59 GLEAQGVPS 67 (165)
Q Consensus 59 ~Le~~Gft~ 67 (165)
-|..-+|.|
T Consensus 40 lL~~fl~kP 48 (184)
T CHL00019 40 VLIYFGKGV 48 (184)
T ss_pred HHHHHhHhH
Confidence 333445544
No 383
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.05 E-value=1.9e+02 Score=20.46 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.4
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
....+.+++.|...|||-++...+..
T Consensus 43 ~l~~l~~I~~lr~~G~~l~~I~~~l~ 68 (96)
T cd04768 43 QLYQLQFILFLRELGFSLAEIKELLD 68 (96)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46788999999999999988765544
No 384
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=21.04 E-value=75 Score=19.23 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.6
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~al 77 (165)
.+.|+++|..-+.-++.++||..+.+.+
T Consensus 6 l~r~Lk~V~~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 6 LYRTLKYVESTDNDDLVREHAQDALEEL 33 (36)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4578999999999999999998877654
No 385
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=21.03 E-value=5.9e+02 Score=22.56 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhh-hhhhHHHHHHHHHHHHHHH
Q 031121 55 QLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTF-VSKGEMQKTEMIQEANLSK 111 (165)
Q Consensus 55 ~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~l-vTK~dle~~~~~qkad~a~ 111 (165)
+.++-|.+.| +|.+.|++|.+++..+ ....+.+...- .+..|+...++.++..+..
T Consensus 20 A~a~~l~~~giip~~~a~~i~~~l~~~-~~d~~~~~~~~~~~~~~v~~~e~~L~~~~g~ 77 (381)
T cd01595 20 ALAEAQAELGLIPKEAAEEIRAAADVF-EIDAERIAEIEKETGHDVIAFVYALAEKCGE 77 (381)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhhhcc-cCCHHHHHHHHHHhCcCcHHHHHHHHHHhhh
Confidence 4677888899 8999999999988775 22333322222 3455555566666555543
No 386
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=20.98 E-value=3.2e+02 Score=19.52 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=21.7
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
+..+.+++.|...|||-++-..++..
T Consensus 44 l~~l~~I~~~r~~G~~L~~I~~~l~~ 69 (124)
T COG0789 44 LELLQIIKTLRELGFSLAEIKELLDL 69 (124)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 77889999999999999887666654
No 387
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.84 E-value=4.2e+02 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
+.+++.+|.|...++ +.+..|-...++=+.-+..|+.+|++|-
T Consensus 459 k~eL~qlr~ene~Lq-~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 459 KSELSQLRQENEQLQ-NKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443332 2333444444444444444444544443
No 388
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.84 E-value=2.6e+02 Score=19.10 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 031121 133 KLRSDIEKMRSE 144 (165)
Q Consensus 133 kL~~ElekLkq~ 144 (165)
.|..||++|+++
T Consensus 25 ~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 25 GLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHh
Confidence 344455555444
No 389
>PRK14156 heat shock protein GrpE; Provisional
Probab=20.74 E-value=3.4e+02 Score=22.12 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031121 129 RETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 129 ~e~ekL~~ElekLkq~LreEI~k 151 (165)
...-++++|++..+.++..|+..
T Consensus 48 d~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 48 NKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444
No 390
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=20.58 E-value=6.8e+02 Score=23.15 Aligned_cols=93 Identities=11% Similarity=0.205 Sum_probs=55.1
Q ss_pred eeccHHHHHHHHhhCC--CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 031121 49 FLVDTLQLVRGLEAQG--VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHF-- 124 (165)
Q Consensus 49 ~~FDT~~fVk~Le~~G--ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksef-- 124 (165)
+....+.|+..|+... -|...-.+|...+.++.... -.|-+.-.-..+..++++..||.-++..++
T Consensus 101 ~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~----------~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ 170 (478)
T PF11855_consen 101 AAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGT----------DPDPERRIAELEREIAEIDAEIDRLEAGDVPV 170 (478)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 3456778999997665 47777788888887764331 222223333444555555555544433322
Q ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031121 125 -----------------SMLQRETEKLRSDIEKMRSELRYEIDK 151 (165)
Q Consensus 125 -----------------a~Lr~e~ekL~~ElekLkq~LreEI~k 151 (165)
..|-++.-++..++..+...|++.|..
T Consensus 171 ld~~~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~ 214 (478)
T PF11855_consen 171 LDDTQARERARQILQLARELPADFRRVEDNFRELDRALRERIID 214 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 244555566777777777777777654
No 391
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.45 E-value=1.4e+02 Score=24.40 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMR 142 (165)
Q Consensus 127 Lr~e~ekL~~ElekLk 142 (165)
|..|+.+|..+|++|+
T Consensus 125 L~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 392
>PRK10098 putative dehydrogenase; Provisional
Probab=20.44 E-value=1.3e+02 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.4
Q ss_pred eeccHHH--HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTLQ--LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~~--fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
+..|.++ ..+-|++.|+++++|+.+++++...
T Consensus 7 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 40 (350)
T PRK10098 7 FDAQTLHSFVQAVWRQAGSEEREAKLVADHLVAA 40 (350)
T ss_pred eCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445543 4556789999999999999998765
No 393
>PRK14127 cell division protein GpsB; Provisional
Probab=20.37 E-value=2.9e+02 Score=20.84 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=10.4
Q ss_pred CCCChHHHHHHHHHHHH
Q 031121 63 QGVPSKQAEAITAAITE 79 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~ 79 (165)
.|+.+++-.....-+.+
T Consensus 21 RGYd~~EVD~FLd~V~~ 37 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIK 37 (109)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 38888876665554433
No 394
>smart00183 NAT_PEP Natriuretic peptide. Atrial natriuretic peptides are vertebrate hormones important in the overall control of cardiovascular homeostasis and sodium and water balance in general.
Probab=20.33 E-value=32 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=11.1
Q ss_pred hHHHHhhhccccee
Q 031121 5 KRVVKLVADSGVRV 18 (165)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (165)
.++-+||+.||+|-
T Consensus 11 ~~~DRIgs~SglGC 24 (26)
T smart00183 11 LKLDRIGSMSGLGC 24 (26)
T ss_pred ccccccccccccCc
Confidence 35678999999985
No 395
>PRK14159 heat shock protein GrpE; Provisional
Probab=20.32 E-value=3.4e+02 Score=22.04 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 128 QRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~LreEI~kl 152 (165)
+...-++++|++..|.+...|+...
T Consensus 43 kd~~lR~~AdfeN~rkR~~rE~e~~ 67 (176)
T PRK14159 43 KDKYMRANAEFENIKKRMEKEKLSA 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443
No 396
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.31 E-value=4.3e+02 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.+..+++.+.+.|..++++++.++
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665554
No 397
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.27 E-value=1.1e+02 Score=21.15 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEK 140 (165)
Q Consensus 124 fa~Lr~e~ekL~~Elek 140 (165)
++.|+.|+++|+.|+.+
T Consensus 34 IalLq~EIeRlkAe~~k 50 (65)
T COG5509 34 IALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555543
No 398
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.14 E-value=1.9e+02 Score=24.81 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~ 144 (165)
..|..|++.|+.+++.|+++
T Consensus 225 ~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 399
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.13 E-value=3.3e+02 Score=25.95 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=60.5
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 031121 59 GLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDI 138 (165)
Q Consensus 59 ~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~El 138 (165)
-|+-.|+|.+-=.+|..++-++=....+-+.+.||-.-=+.+.....=-+.=.++.-...+++-.-..--..|++-+.-+
T Consensus 224 mf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal 303 (518)
T KOG1936|consen 224 MFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEAL 303 (518)
T ss_pred HHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHH
Confidence 35778999999999988888877777777777777622222222222222222222222222111111112344555556
Q ss_pred HHHHHHHHH-HHHhhccchhhcccccCC
Q 031121 139 EKMRSELRY-EIDKVTAGQRLDLNLERG 165 (165)
Q Consensus 139 ekLkq~Lre-EI~kl~a~vrLDlNLEKg 165 (165)
+.|++-+.+ ++-....-+..|++|=||
T Consensus 304 ~dlk~Lf~y~~~fg~s~~isfDlSLARG 331 (518)
T KOG1936|consen 304 ADLKQLFEYLEIFGISERISFDLSLARG 331 (518)
T ss_pred HHHHHHHHHHHHcCCcceEEeehHHhcc
Confidence 666666654 566777778888888776
No 400
>PRK14144 heat shock protein GrpE; Provisional
Probab=20.04 E-value=3.8e+02 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
.++...-++++|++..|.++..|+...
T Consensus 63 elkdk~lR~~AefeN~RKR~~kE~e~~ 89 (199)
T PRK14144 63 ENWEKSVRALAELENVRRRMEREVANA 89 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666655555443
No 401
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=20.04 E-value=3.6e+02 Score=21.40 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHH----HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031121 105 QEANLS----KFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155 (165)
Q Consensus 105 qkad~a----~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~ 155 (165)
.|..|+ .-+.|++.+. ++...+......|..++|+-+++|+.+-..+.-.
T Consensus 67 LretfsNFssst~aEvqaL~-S~G~sl~~kVtSLea~lEkqqQeLkAdhS~lllh 120 (138)
T PF03954_consen 67 LRETFSNFSSSTLAEVQALS-SQGGSLQDKVTSLEAKLEKQQQELKADHSTLLLH 120 (138)
T ss_pred HHHHHhcccHHHHHHHHHHH-hccccHHhHcccHHHHHHHHHHHHhhhHHHHHHH
Confidence 345555 3455665553 4555677777778888888888888876555433
No 402
>PRK11519 tyrosine kinase; Provisional
Probab=20.02 E-value=8.1e+02 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 031121 65 VPSKQAEAITAAITEVLND 83 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~ 83 (165)
-+++.|..|+.++.+...+
T Consensus 237 ~dP~~Aa~iaN~l~~~Yi~ 255 (719)
T PRK11519 237 EDREQIRDILNSITRNYLE 255 (719)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678899999988886554
Done!