Query 031121
Match_columns 165
No_of_seqs 144 out of 289
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h22_A Leucine-rich repeat fli 86.7 5 0.00017 29.3 8.5 54 86-140 9-62 (103)
2 3lay_A Zinc resistance-associa 85.6 9 0.00031 30.0 10.2 33 120-152 111-143 (175)
3 1g6u_A Domain swapped dimer; d 83.8 3.6 0.00012 25.5 5.6 37 109-145 2-43 (48)
4 3sja_C Golgi to ER traffic pro 82.3 3.3 0.00011 27.9 5.5 45 104-148 10-58 (65)
5 4dzn_A Coiled-coil peptide CC- 81.4 3.5 0.00012 23.8 4.5 20 124-143 11-30 (33)
6 3trt_A Vimentin; cytoskeleton, 80.0 11 0.00036 25.0 8.4 53 89-142 18-76 (77)
7 2yy0_A C-MYC-binding protein; 79.9 2.1 7.2E-05 27.5 3.7 26 121-146 18-43 (53)
8 1gmj_A ATPase inhibitor; coile 79.9 11 0.00037 26.5 7.7 39 105-147 38-76 (84)
9 3hnw_A Uncharacterized protein 79.2 11 0.00037 28.4 8.1 48 106-154 81-131 (138)
10 3gp4_A Transcriptional regulat 78.6 18 0.0006 26.8 10.7 27 50-76 45-71 (142)
11 3he5_B Synzip2; heterodimeric 77.8 7.5 0.00026 24.4 5.7 39 106-156 9-47 (52)
12 2yy0_A C-MYC-binding protein; 75.3 6.5 0.00022 25.1 5.0 22 125-146 29-50 (53)
13 3ol1_A Vimentin; structural ge 74.9 21 0.00073 25.8 9.9 51 105-156 67-117 (119)
14 1use_A VAsp, vasodilator-stimu 74.5 9 0.00031 24.0 5.4 8 109-116 9-16 (45)
15 3lay_A Zinc resistance-associa 74.5 15 0.0005 28.8 7.9 27 130-156 114-140 (175)
16 3jsv_C NF-kappa-B essential mo 72.5 21 0.00074 25.5 7.7 38 109-147 42-79 (94)
17 3sjb_C Golgi to ER traffic pro 70.9 16 0.00053 26.2 6.7 46 103-148 26-75 (93)
18 3okq_A BUD site selection prot 69.9 34 0.0012 26.1 9.6 24 123-146 55-78 (141)
19 3s84_A Apolipoprotein A-IV; fo 69.6 46 0.0016 27.4 10.9 12 106-117 65-76 (273)
20 3hnw_A Uncharacterized protein 69.2 23 0.0008 26.5 7.8 22 124-145 112-133 (138)
21 3fxd_A Protein ICMQ; helix bun 68.9 4 0.00014 26.8 2.9 20 64-83 4-23 (57)
22 3oja_B Anopheles plasmodium-re 68.9 56 0.0019 28.5 11.3 11 129-139 544-554 (597)
23 2xdj_A Uncharacterized protein 68.6 26 0.0009 24.2 7.8 26 122-147 34-59 (83)
24 2v4h_A NF-kappa-B essential mo 68.5 32 0.0011 25.2 9.4 37 109-146 64-100 (110)
25 3ghg_A Fibrinogen alpha chain; 67.6 17 0.00057 33.5 7.7 45 104-149 114-158 (562)
26 3mq7_A Bone marrow stromal ant 67.6 27 0.00091 26.0 7.5 37 108-145 72-108 (121)
27 2wt7_B Transcription factor MA 66.2 32 0.0011 24.3 10.4 80 52-146 7-86 (90)
28 3vlc_E Golgi to ER traffic pro 65.0 5.9 0.0002 28.4 3.4 47 100-146 30-80 (94)
29 3oja_B Anopheles plasmodium-re 64.8 48 0.0016 28.9 10.0 29 125-153 554-582 (597)
30 2c5k_T Syntaxin TLG1, T-snare 64.4 17 0.00059 25.6 5.8 55 93-147 36-93 (95)
31 1t2k_D Cyclic-AMP-dependent tr 64.1 22 0.00076 22.6 5.9 36 109-145 24-59 (61)
32 3gpv_A Transcriptional regulat 63.2 43 0.0015 24.7 8.8 27 50-76 59-85 (148)
33 1ci6_A Transcription factor AT 62.3 29 0.00098 22.5 6.2 40 107-147 23-62 (63)
34 1deq_A Fibrinogen (alpha chain 61.6 62 0.0021 28.5 9.9 39 106-145 119-157 (390)
35 3oja_A Leucine-rich immune mol 61.2 35 0.0012 29.2 8.4 33 122-154 442-474 (487)
36 3s4r_A Vimentin; alpha-helix, 61.0 25 0.00084 24.6 6.1 40 104-144 53-92 (93)
37 2dfs_A Myosin-5A; myosin-V, in 60.4 98 0.0034 30.3 12.1 19 124-142 1025-1043(1080)
38 3ol1_A Vimentin; structural ge 60.2 37 0.0013 24.5 7.2 34 121-154 68-104 (119)
39 1vg5_A RSGI RUH-014, rhomboid 57.7 32 0.0011 23.2 6.0 25 52-76 28-52 (73)
40 1jcd_A Major outer membrane li 56.9 32 0.0011 21.9 5.5 6 154-159 44-49 (52)
41 4dnd_A Syntaxin-10, SYN10; str 56.2 55 0.0019 24.1 7.6 42 104-145 78-128 (130)
42 1mul_A NS2, HU-2, DNA binding 55.7 25 0.00086 23.7 5.3 34 53-86 3-37 (90)
43 1owf_B IHF-beta, integration H 55.2 20 0.00067 24.4 4.7 34 53-86 3-38 (94)
44 2iie_A Integration HOST factor 54.6 33 0.0011 27.0 6.6 46 56-101 8-55 (204)
45 1gd2_E Transcription factor PA 53.8 29 0.001 23.2 5.2 39 107-146 29-67 (70)
46 1hjb_A Ccaat/enhancer binding 53.5 27 0.00091 24.4 5.1 22 123-144 44-65 (87)
47 1owf_A IHF-alpha, integration 53.0 23 0.00079 24.4 4.8 36 51-86 3-39 (99)
48 2o97_B NS1, HU-1, DNA-binding 53.0 29 0.00098 23.4 5.2 33 54-86 4-37 (90)
49 3a7p_A Autophagy protein 16; c 52.9 76 0.0026 24.4 8.1 15 49-64 24-38 (152)
50 3ku8_A GYRA14, DNA gyrase subu 52.8 12 0.00043 28.8 3.6 12 64-75 108-119 (156)
51 1b8z_A Protein (histonelike pr 50.6 26 0.0009 23.5 4.7 33 54-86 4-37 (90)
52 1wt6_A Myotonin-protein kinase 50.5 46 0.0016 23.1 5.9 39 108-147 32-70 (81)
53 3swk_A Vimentin; cytoskeleton, 50.4 38 0.0013 23.3 5.5 31 122-152 49-82 (86)
54 3rhi_A DNA-binding protein HU; 49.9 22 0.00076 24.3 4.3 33 54-86 7-40 (93)
55 3kqg_A Langerin, C-type lectin 49.8 18 0.00063 26.5 4.1 37 106-147 5-41 (182)
56 2dgc_A Protein (GCN4); basic d 48.9 14 0.00046 24.2 2.8 24 123-146 38-61 (63)
57 1gu4_A CAAT/enhancer binding p 48.9 36 0.0012 23.2 5.1 24 122-145 43-66 (78)
58 2np2_A HBB; protein-DNA comple 48.8 34 0.0012 24.0 5.2 37 50-86 8-50 (108)
59 1gs9_A Apolipoprotein E, APOE4 48.5 85 0.0029 23.9 7.8 15 66-80 22-36 (165)
60 4etp_A Kinesin-like protein KA 48.3 24 0.00081 30.6 5.1 21 138-158 43-63 (403)
61 3i00_A HIP-I, huntingtin-inter 48.1 27 0.00093 25.7 4.7 48 94-141 9-59 (120)
62 1p71_A DNA-binding protein HU; 46.9 33 0.0011 23.3 4.8 33 54-86 4-37 (94)
63 2g3q_A Protein YBL047C; endocy 46.6 18 0.00061 21.3 2.9 21 55-75 6-26 (43)
64 3c4i_A DNA-binding protein HU 46.5 33 0.0011 23.6 4.8 33 54-86 4-37 (99)
65 2hjj_A Hypothetical protein YK 45.9 11 0.00038 26.6 2.1 19 62-80 9-27 (87)
66 1tu3_F RAB GTPase binding effe 45.3 31 0.0011 23.8 4.3 48 94-153 6-53 (79)
67 1l8d_A DNA double-strand break 45.2 44 0.0015 23.1 5.3 23 124-146 80-102 (112)
68 1r8d_A Transcription activator 45.1 70 0.0024 22.0 6.4 24 51-74 46-69 (109)
69 3oja_A Leucine-rich immune mol 45.0 72 0.0025 27.3 7.7 40 107-147 435-474 (487)
70 3twe_A Alpha4H; unknown functi 44.7 35 0.0012 18.7 3.6 20 127-146 6-25 (27)
71 1go4_E MAD1 (mitotic arrest de 44.6 24 0.00081 25.4 3.8 22 124-145 21-42 (100)
72 2v66_B Nuclear distribution pr 44.3 89 0.0031 22.7 7.7 23 124-146 37-59 (111)
73 1z96_A DNA-damage, UBA-domain 42.4 35 0.0012 19.3 3.7 20 54-73 5-24 (40)
74 1go4_E MAD1 (mitotic arrest de 41.5 22 0.00075 25.6 3.2 21 126-146 72-92 (100)
75 1jnm_A Proto-oncogene C-JUN; B 40.8 30 0.001 22.1 3.6 17 126-142 33-49 (62)
76 2dai_A Ubadc1, ubiquitin assoc 40.6 55 0.0019 22.3 5.1 36 54-93 30-65 (83)
77 2v71_A Nuclear distribution pr 40.5 1.3E+02 0.0046 23.7 8.3 23 124-146 90-112 (189)
78 3ilw_A DNA gyrase subunit A; D 40.4 26 0.00089 31.5 4.2 29 117-145 411-439 (470)
79 1ify_A HHR23A, UV excision rep 39.9 20 0.00068 22.0 2.4 23 54-76 9-31 (49)
80 3tnu_A Keratin, type I cytoske 39.9 53 0.0018 23.9 5.3 9 134-142 89-97 (131)
81 1lwu_B Fibrinogen beta chain; 39.5 54 0.0019 27.8 5.9 36 117-152 23-58 (323)
82 2e7s_A RAB guanine nucleotide 39.1 76 0.0026 23.9 6.0 28 130-157 68-95 (135)
83 3lpx_A GYRA, DNA gyrase, A sub 39.0 26 0.00088 31.9 3.9 12 64-75 419-430 (500)
84 3ra3_A P1C; coiled coil domain 38.6 32 0.0011 19.0 2.8 22 124-145 2-23 (28)
85 2wt7_A Proto-oncogene protein 38.6 76 0.0026 20.3 6.2 20 126-145 41-60 (63)
86 3oa7_A Head morphogenesis prot 38.3 63 0.0022 26.1 5.7 24 122-145 44-67 (206)
87 2wt7_A Proto-oncogene protein 37.9 74 0.0025 20.3 5.1 23 122-144 30-52 (63)
88 2wuj_A Septum site-determining 37.2 19 0.00065 23.0 2.1 20 125-144 37-56 (57)
89 3gee_A MNME, tRNA modification 36.9 1.7E+02 0.0057 25.6 8.8 71 65-144 138-223 (476)
90 4h22_A Leucine-rich repeat fli 36.9 1.2E+02 0.004 21.9 7.8 41 106-147 43-83 (103)
91 1q06_A Transcriptional regulat 36.4 1.2E+02 0.004 21.8 8.6 26 51-76 44-69 (135)
92 3a5t_A Transcription factor MA 35.6 14 0.00049 26.9 1.4 78 52-144 17-94 (107)
93 3nmd_A CGMP dependent protein 34.6 94 0.0032 21.0 5.3 12 130-141 55-66 (72)
94 2vz4_A Tipal, HTH-type transcr 34.5 81 0.0028 21.7 5.3 25 51-75 45-69 (108)
95 1wgn_A UBAP1, ubiquitin associ 34.4 20 0.00069 23.9 1.9 32 55-90 21-52 (63)
96 1t2k_D Cyclic-AMP-dependent tr 34.3 87 0.003 19.7 5.1 23 122-144 29-51 (61)
97 1zvu_A Topoisomerase IV subuni 34.0 36 0.0012 32.2 4.2 26 117-142 397-422 (716)
98 4ani_A Protein GRPE; chaperone 33.9 1.1E+02 0.0036 24.6 6.5 28 125-152 76-103 (213)
99 3m9b_A Proteasome-associated A 33.6 50 0.0017 27.4 4.6 18 125-142 78-95 (251)
100 2f1m_A Acriflavine resistance 33.3 1.2E+02 0.004 23.6 6.7 18 44-61 46-63 (277)
101 1exe_A Transcription factor 1; 33.3 34 0.0012 23.6 3.1 32 55-86 5-37 (99)
102 3swy_A Cyclic nucleotide-gated 33.3 85 0.0029 19.4 4.6 33 122-154 12-44 (46)
103 1wji_A Tudor domain containing 31.9 46 0.0016 21.5 3.3 20 54-73 10-29 (63)
104 1r8e_A Multidrug-efflux transp 30.4 1.9E+02 0.0065 22.4 8.6 25 50-74 49-73 (278)
105 3mq9_A Bone marrow stromal ant 29.6 2.6E+02 0.0087 23.6 13.0 16 104-119 401-416 (471)
106 3swf_A CGMP-gated cation chann 29.2 95 0.0033 21.1 4.7 28 126-153 18-45 (74)
107 1veg_A NEDD8 ultimate buster-1 29.1 38 0.0013 23.4 2.7 23 54-76 30-52 (83)
108 1np3_A Ketol-acid reductoisome 28.9 2.4E+02 0.0081 23.0 10.5 13 58-70 211-223 (338)
109 2ekk_A UBA domain from E3 ubiq 28.6 32 0.0011 20.6 2.0 23 54-76 10-32 (47)
110 3w03_C DNA repair protein XRCC 28.5 1.7E+02 0.0057 23.0 6.7 21 125-145 162-182 (184)
111 3m20_A 4-oxalocrotonate tautom 28.5 67 0.0023 19.7 3.6 24 63-86 8-31 (62)
112 2e9f_A Argininosuccinate lyase 28.4 3E+02 0.01 24.0 9.8 37 47-83 30-70 (462)
113 3g43_E Voltage-dependent L-typ 27.9 96 0.0033 21.5 4.6 17 136-152 21-37 (81)
114 1q08_A Zn(II)-responsive regul 27.8 1.3E+02 0.0046 19.8 8.2 25 51-75 3-27 (99)
115 2dak_A Ubiquitin carboxyl-term 27.8 45 0.0015 21.3 2.7 22 55-76 11-32 (63)
116 2iie_A Integration HOST factor 27.7 72 0.0024 25.0 4.4 36 51-86 47-83 (204)
117 3rh3_A Uncharacterized DUF3829 27.5 2.7E+02 0.0092 23.2 10.3 70 63-150 75-144 (264)
118 1rh4_A Right-handed coiled coi 27.4 94 0.0032 17.9 4.4 10 108-117 3-12 (35)
119 3hh0_A Transcriptional regulat 27.4 1.3E+02 0.0045 22.0 5.7 25 50-74 47-71 (146)
120 1ci6_A Transcription factor AT 27.0 1.3E+02 0.0043 19.3 5.1 23 122-144 30-52 (63)
121 2jy5_A Ubiquilin-1; UBA, alter 26.7 86 0.003 19.2 3.9 19 55-73 14-33 (52)
122 1dkg_A Nucleotide exchange fac 26.4 2E+02 0.0069 22.4 6.9 27 127-153 58-84 (197)
123 1nfn_A Apolipoprotein E3; lipi 26.3 2.2E+02 0.0076 21.9 8.7 15 66-80 22-36 (191)
124 3ry0_A Putative tautomerase; o 26.2 77 0.0026 19.4 3.6 24 63-86 9-32 (65)
125 1nxu_A Hypothetical oxidoreduc 25.5 60 0.002 27.5 3.8 25 56-80 12-36 (333)
126 1rfm_A L-sulfolactate dehydrog 25.5 60 0.002 27.7 3.8 25 56-80 12-36 (344)
127 2dkl_A Trinucleotide repeat co 25.3 45 0.0015 22.9 2.5 37 54-94 22-58 (85)
128 1xzp_A Probable tRNA modificat 25.1 2.9E+02 0.01 24.1 8.4 15 64-78 149-163 (482)
129 2kw6_A Cyclin-dependent kinase 25.1 1.5E+02 0.0051 19.7 4.9 44 107-154 18-61 (65)
130 1wtj_A Ureidoglycolate dehydro 25.0 62 0.0021 27.6 3.8 32 49-80 13-46 (343)
131 2w6b_A RHO guanine nucleotide 24.8 98 0.0033 20.0 3.8 41 100-145 10-50 (56)
132 2x06_A L-sulfolactate dehydrog 24.7 63 0.0022 27.6 3.8 26 55-80 10-36 (344)
133 3he5_B Synzip2; heterodimeric 24.7 1.3E+02 0.0045 18.7 5.6 16 124-139 33-48 (52)
134 3uoe_A Dehydrogenase; structur 24.6 63 0.0022 27.8 3.8 33 48-80 25-59 (357)
135 1vbi_A Type 2 malate/lactate d 24.6 63 0.0022 27.5 3.8 25 56-80 12-36 (344)
136 1whc_A RSGI RUH-027, UBA/UBX 3 24.6 68 0.0023 20.6 3.2 20 56-75 12-31 (64)
137 1hjb_A Ccaat/enhancer binding 24.5 1.8E+02 0.0061 20.1 6.1 26 122-147 50-75 (87)
138 1wiv_A UBP14, ubiquitin-specif 24.3 55 0.0019 21.7 2.7 23 54-76 30-52 (73)
139 1nkp_B MAX protein, MYC proto- 24.1 95 0.0033 20.6 4.0 19 127-145 59-77 (83)
140 1otf_A 4-oxalocrotonate tautom 24.0 93 0.0032 18.4 3.6 24 63-86 9-32 (62)
141 1z2i_A Malate dehydrogenase; s 24.0 66 0.0023 27.6 3.8 32 49-80 12-45 (358)
142 2lf0_A Uncharacterized protein 24.0 1.7E+02 0.0057 21.8 5.5 29 124-152 38-66 (123)
143 1yk0_E Atrial natriuretic fact 24.0 8.4 0.00029 21.5 -1.2 14 6-19 6-19 (26)
144 1v9n_A Malate dehydrogenase; r 23.8 67 0.0023 27.6 3.8 32 49-80 14-47 (360)
145 3i00_A HIP-I, huntingtin-inter 23.7 2.1E+02 0.0073 20.8 9.9 43 99-142 39-81 (120)
146 2cpw_A CBL-interacting protein 23.7 50 0.0017 21.3 2.4 22 55-76 21-42 (64)
147 3i0p_A Malate dehydrogenase; a 23.7 67 0.0023 27.6 3.8 33 48-80 8-42 (365)
148 2xkj_E Topoisomerase IV; type 23.6 84 0.0029 29.9 4.7 25 119-143 693-717 (767)
149 1lwu_C Fibrinogen gamma chain; 23.6 1.9E+02 0.0067 24.4 6.7 16 130-145 34-49 (323)
150 1dv0_A DNA repair protein HHR2 23.3 33 0.0011 20.9 1.3 18 56-73 7-24 (47)
151 3n57_C Atrial natriuretic fact 22.9 16 0.00055 20.7 -0.2 15 5-19 10-24 (28)
152 4h8a_A Ureidoglycolate dehydro 22.9 58 0.002 27.7 3.2 32 49-80 5-38 (339)
153 3b2e_E Golgi to ER traffic pro 28.5 18 0.00061 25.3 0.0 48 103-150 23-74 (84)
154 2crn_A Ubash3A protein; compac 22.8 69 0.0024 20.7 2.9 20 56-75 12-31 (64)
155 1yk1_E Natriuretic peptides B; 22.7 16 0.00055 20.3 -0.2 14 6-19 6-19 (26)
156 1a93_B MAX protein, coiled coi 22.7 1.2E+02 0.0042 17.7 4.0 17 128-144 13-29 (34)
157 2inr_A DNA topoisomerase 4 sub 22.6 1.3E+02 0.0046 27.2 5.7 24 121-144 453-476 (514)
158 2eqb_B RAB guanine nucleotide 22.5 2.1E+02 0.0073 20.3 8.4 29 129-157 47-75 (97)
159 3plt_A Sphingolipid long chain 22.3 3.2E+02 0.011 22.2 8.3 52 104-155 84-146 (234)
160 1k7w_A Delta 2 crystallin; eye 22.2 3.9E+02 0.013 23.2 9.3 30 54-83 45-75 (468)
161 3o0z_A RHO-associated protein 22.1 2.8E+02 0.0095 21.5 9.5 14 149-162 130-143 (168)
162 3abf_A 4-oxalocrotonate tautom 22.1 89 0.003 18.7 3.3 24 63-86 10-33 (64)
163 2x4k_A 4-oxalocrotonate tautom 22.1 1.1E+02 0.0037 17.9 3.6 24 63-86 12-35 (63)
164 1xrh_A Ureidoglycolate dehydro 22.0 62 0.0021 27.7 3.2 31 50-80 6-38 (351)
165 1dh3_A Transcription factor CR 21.8 37 0.0013 21.5 1.4 22 124-145 31-52 (55)
166 3m21_A Probable tautomerase HP 21.7 90 0.0031 19.3 3.3 23 64-86 13-35 (67)
167 3w03_C DNA repair protein XRCC 21.7 2.3E+02 0.0079 22.2 6.3 29 122-150 152-180 (184)
168 3ej9_B Beta-subunit of trans-3 21.6 82 0.0028 21.3 3.1 24 63-86 9-32 (70)
169 2opa_A Probable tautomerase YW 21.6 1.1E+02 0.0038 18.0 3.6 24 63-86 9-32 (61)
170 2ve7_C Kinetochore protein NUF 21.3 55 0.0019 26.6 2.7 13 141-153 191-203 (250)
171 1nlw_A MAD protein, MAX dimeri 21.2 1.2E+02 0.004 20.4 4.0 20 126-145 58-77 (80)
172 1zme_C Proline utilization tra 20.8 61 0.0021 20.1 2.3 21 125-145 47-67 (70)
173 1yke_B RNA polymerase II holoe 20.7 2.7E+02 0.0093 20.9 7.2 37 81-117 55-102 (151)
174 1t6f_A Geminin; coiled-coil, c 20.7 1.2E+02 0.004 18.0 3.3 12 123-134 22-33 (37)
175 2g8y_A Malate/L-lactate dehydr 20.3 69 0.0024 27.8 3.2 32 49-80 29-62 (385)
176 3m48_A General control protein 20.3 1.3E+02 0.0046 17.4 3.4 22 124-145 9-30 (33)
177 2ysk_A Hypothetical protein TT 20.1 94 0.0032 22.9 3.6 34 52-85 15-50 (145)
No 1
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=86.68 E-value=5 Score=29.27 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 031121 86 ENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEK 140 (165)
Q Consensus 86 e~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~Elek 140 (165)
+...+.|||=++|.|....+.=.+.-||..|..++ ..++.++.++....+|++.
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~e-E~~aql~Re~~eK~re~e~ 62 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE-EQLAESRRQYEEKNKEFER 62 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45567889999988754444333444454444332 2244444444433333333
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=85.56 E-value=9 Score=29.99 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=26.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 120 QEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 120 eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
+...+..|-.|+..|+.++...+.+++.|+.|-
T Consensus 111 DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 111 DTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677788888888888888888888888775
No 3
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=83.76 E-value=3.6 Score=25.50 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHH-----FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 109 ~a~LR~Em~~~ekse-----fa~Lr~e~ekL~~ElekLkq~L 145 (165)
++.||+|+|.+.+.- .+.|.+|...|...+..|+.+|
T Consensus 2 laalkselqalkkegfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766544 4566666666666666666555
No 4
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=82.29 E-value=3.3 Score=27.86 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhh-hh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQE-HH---FSMLQRETEKLRSDIEKMRSELRYE 148 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~ek-se---fa~Lr~e~ekL~~ElekLkq~LreE 148 (165)
+.+..+-+||.|+....- .+ ++.|+...++|..||+++++.|.-|
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 446778888888866433 33 4578888999999999998887654
No 5
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.36 E-value=3.5 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq 143 (165)
++.|+.|+..|+-||..|+|
T Consensus 11 iaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 11 IAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34555555556666666555
No 6
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.97 E-value=11 Score=25.01 Aligned_cols=53 Identities=9% Similarity=0.248 Sum_probs=28.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 89 AHTFVSKGEMQKTEMIQEANLSKFKSEVQS------SQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 89 ~~~lvTK~dle~~~~~qkad~a~LR~Em~~------~eksefa~Lr~e~ekL~~ElekLk 142 (165)
|..++.|.. ++++.-+...+.+|...... .-|.|+..||.....|+.||+.|+
T Consensus 18 YE~ia~knr-~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 18 YESVAAKNL-QEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455665543 33344445556666554322 235556666666666666666554
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.89 E-value=2.1 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=15.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.+|..+|+.|++.|+..++.|++++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555543
No 8
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=79.88 E-value=11 Score=26.54 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
++..+.+||..| ..++..-+.++++++.+|++.+++|++
T Consensus 38 ekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 38 AKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999887 355666677777788888777777643
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.23 E-value=11 Score=28.37 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHhhcc
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE---LRYEIDKVTA 154 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~---LreEI~kl~a 154 (165)
+.++.++.+|+..+ |++...++-+++.+..++++++.+ |..++.++.+
T Consensus 81 ~~~l~~~~kE~~~l-K~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 81 SLDIENKDKEIYDL-KHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 344444455555555555554443 3344444433
No 10
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=78.60 E-value=18 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=22.4
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.++.+.+++.|...|||-++...+...
T Consensus 45 dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 45 DLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467788999999999999987776654
No 11
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=77.83 E-value=7.5 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
+..|+.||++-..+++. ...+|++-..|++||.++..++
T Consensus 9 rkkiarlkkdnlqlerd------------eqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 9 RKKIARLKKDNLQLERD------------EQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhh------------HhhHHHHHHHHHHHHHHHHHHH
Confidence 44566676665433332 2346666667777777766554
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.34 E-value=6.5 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+.|+.+++.|+.+++.|+++|.
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888888877763
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.86 E-value=21 Score=25.85 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
...+|..||+++...- ---..|.+..+-|+-||+=||+--.+||..+++-+
T Consensus 67 ~E~di~~lrK~lD~~~-l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 67 AENTLQSFRQDVDNAS-LARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889998874321 11234677788899999999999999999888754
No 14
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=74.53 E-value=9 Score=24.00 Aligned_cols=8 Identities=38% Similarity=0.658 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 031121 109 LSKFKSEV 116 (165)
Q Consensus 109 ~a~LR~Em 116 (165)
+..+|.|+
T Consensus 9 le~~KqEI 16 (45)
T 1use_A 9 LQRVKQEL 16 (45)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=74.47 E-value=15 Score=28.78 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccch
Q 031121 130 ETEKLRSDIEKMRSELRYEIDKVTAGQ 156 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~kl~a~v 156 (165)
..+.|..|+..|+++|..+-.+.+..+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888877766655443
No 16
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.55 E-value=21 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
+.=|+..+.+- +.+|..=|+..|++..+.+.|...++.
T Consensus 42 i~vLk~Qv~IY-~~DF~aERadREkl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 42 VPVLKAQADIY-KADFQAERHAREKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33455555544 688999999999999888888877654
No 17
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=70.88 E-value=16 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhh-hh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121 103 MIQEANLSKFKSEVQSSQE-HH---FSMLQRETEKLRSDIEKMRSELRYE 148 (165)
Q Consensus 103 ~~qkad~a~LR~Em~~~ek-se---fa~Lr~e~ekL~~ElekLkq~LreE 148 (165)
-+.+.++-+||.|+...-- .| .+.|+...+++..||++++..|...
T Consensus 26 ~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 26 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888889999866533 33 4578999999999999998887654
No 18
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=69.90 E-value=34 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.+..+..++..+..+|++|+.-+.
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 19
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=69.64 E-value=46 Score=27.40 Aligned_cols=12 Identities=0% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQ 117 (165)
Q Consensus 106 kad~a~LR~Em~ 117 (165)
..++.+||..|.
T Consensus 65 ~~~~eelr~kL~ 76 (273)
T 3s84_A 65 NTQAEQLRRQLT 76 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.15 E-value=23 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~L 145 (165)
...++.++..|+.++-+|.+.|
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 21
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=68.93 E-value=4 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHHHHHHHh
Q 031121 64 GVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 64 Gft~eQAEai~~al~~vl~~ 83 (165)
-+|++|+++|-+++-++|..
T Consensus 4 ~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHc
Confidence 47999999999999888764
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.87 E-value=56 Score=28.50 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 031121 129 RETEKLRSDIE 139 (165)
Q Consensus 129 ~e~ekL~~Ele 139 (165)
.+.++++..++
T Consensus 544 ~~~~~le~~~~ 554 (597)
T 3oja_B 544 QENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHh
Confidence 33333333333
No 23
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.57 E-value=26 Score=24.19 Aligned_cols=26 Identities=4% Similarity=0.144 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.|++.||-.+|.+..++++|+++-++
T Consensus 34 ~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 34 SDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34466777888899999999887665
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.49 E-value=32 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+.=|+..+.+- +.+|.+=|+..|++..+.+.|..+|.
T Consensus 64 I~vLkaQv~IY-~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 64 VPVLKAQADIY-KADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHccchhhHHHHHhHHHHHHHHHH
Confidence 33455555443 68888888899999999888888765
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.58 E-value=17 Score=33.49 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI 149 (165)
+++..+..||-+|+..- +.+..||+-++.++.+|.+|+-.+--.|
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777776544 6667777777777777777776654333
No 26
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.55 E-value=27 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.+.+|+.||..+ +......-.+.|+|+.+.+-+..++
T Consensus 72 ~vqeLqgEI~~L-nq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 72 KVEELEGEITTL-NHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhhhHh
Confidence 355555555444 2333444445555555555444443
No 27
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=66.15 E-value=32 Score=24.28 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ 131 (165)
.+-.|-+.| .|+|.+|-.-| +-.+.-+..- ..+++.-+|-- ..+..|-.++..+ ..+...|+.|+
T Consensus 7 sVreLN~~L--~gls~eev~~l-Kq~RRtlKNR--gyAq~CR~Kr~---------~q~~~LE~e~~~L-~~e~~~L~~e~ 71 (90)
T 2wt7_B 7 SVRELNRHL--RGFTKDEVIRL-KQKRRTLKNR--GYAQSCRYKRV---------QQKHHLENEKTQL-IQQVEQLKQEV 71 (90)
T ss_dssp CHHHHHTTC--TTCCHHHHHHH-HHHHHHHHHH--HHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHH--cCCCHHHHHHH-HHHHHhhhhh--HHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344566667 59999995443 3333333221 12233333322 1122233333322 35667888888
Q ss_pred HHHHHHHHHHHHHHH
Q 031121 132 EKLRSDIEKMRSELR 146 (165)
Q Consensus 132 ekL~~ElekLkq~Lr 146 (165)
.++..|++.+++++.
T Consensus 72 ~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 72 SRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999988763
No 28
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=65.03 E-value=5.9 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hh---hhhhHHHHHHHHHHHHHHHHHHH
Q 031121 100 KTEMIQEANLSKFKSEVQSSQE-HH---FSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 100 ~~~~~qkad~a~LR~Em~~~ek-se---fa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
...-+.+.++-+|+.|+...-- .| ++.|+...++|..||++++..|.
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334557788889999866433 33 45788888888888888877654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.84 E-value=48 Score=28.93 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 125 SMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
...+...+.++.|++.+++++++-+.++.
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555555555555443
No 30
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=64.44 E-value=17 Score=25.56 Aligned_cols=55 Identities=7% Similarity=0.148 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 93 VSKGEMQKTEMIQEANLSKFKSEVQSSQEH---HFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 93 vTK~dle~~~~~qkad~a~LR~Em~~~eks---efa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
-.+.++++.--....++..|+.-+.+.++. |+..=+.-...++++|+.|+.++..
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666778888888888776554 4456666777888888888888743
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.07 E-value=22 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
+.+|-.++..+ ..+-..|+.+...|+.|+..|++.|
T Consensus 24 ~~~Le~~~~~L-~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDL-SSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333 2344555666666666666666654
No 32
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=63.17 E-value=43 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.2
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
....+.+++.|...|||-++...+...
T Consensus 59 dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 59 ALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356789999999999999987777654
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.34 E-value=29 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
..+..|-.++..+ ..+-..|+.+.+.|+.|+..|++-|.+
T Consensus 23 ~~~~~le~~~~~L-~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 23 AEQEALTGECKEL-EKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555544 244556666777777777777766543
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.56 E-value=62 Score=28.50 Aligned_cols=39 Identities=10% Similarity=0.352 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
+..|.-||.-+..--. .+..||.-++.++.+|.+|+-.+
T Consensus 119 e~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444322212 45556666666666666666666
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.15 E-value=35 Score=29.23 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
.++..++.++++++.+++.+...+.+-.++++.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 445555556666666666666555555555443
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.02 E-value=25 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+...|+.||..+..+. .+-+.+..+.+.++.+++.++.+
T Consensus 53 ~ye~~i~~Lr~~i~~~~-~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLT-NDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777777775442 33344444445555555555544
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.44 E-value=98 Score=30.29 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLk 142 (165)
.+.|+.|+.+|+.+++.|+
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.15 E-value=37 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHhhcc
Q 031121 121 EHHFSMLQRETEK---LRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 121 ksefa~Lr~e~ek---L~~ElekLkq~LreEI~kl~a 154 (165)
.++|..||...+. .+.|++.-=+.|++||.=++.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777766553 466677667777787776553
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.73 E-value=32 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=19.5
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
+.-.-|++|..-||++++|......
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456789999999999999765543
No 40
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=56.89 E-value=32 Score=21.89 Aligned_cols=6 Identities=67% Similarity=0.761 Sum_probs=2.7
Q ss_pred cchhhc
Q 031121 154 AGQRLD 159 (165)
Q Consensus 154 a~vrLD 159 (165)
|..|||
T Consensus 44 AN~RlD 49 (52)
T 1jcd_A 44 ANQRAD 49 (52)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 444444
No 41
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=56.22 E-value=55 Score=24.14 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhh---------hhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 104 IQEANLSKFKSEVQSSQ---------EHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~e---------ksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
..+-++.+|..-+.+.+ ..|.+.=|.-...++.+|..|+..|
T Consensus 78 sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 78 SIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555444 3345555555566777777776655
No 42
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=55.69 E-value=25 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 53 TLQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 53 T~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.-.|++.+ +..|+|..+|+.++.++-+.+.+.+.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLK 37 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34567776 46789999999999999999887664
No 43
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=55.16 E-value=20 Score=24.41 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=27.9
Q ss_pred HHHHHHHHh-h-CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 53 TLQLVRGLE-A-QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 53 T~~fVk~Le-~-~Gft~eQAEai~~al~~vl~~~le 86 (165)
.-.|++.+. . .|+|..+|+.++.++-+.+.+.+.
T Consensus 3 k~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~ 38 (94)
T 1owf_B 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLA 38 (94)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456788886 4 499999999999999999887664
No 44
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=54.62 E-value=33 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=36.8
Q ss_pred HHHHHhhC-C-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHH
Q 031121 56 LVRGLEAQ-G-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKT 101 (165)
Q Consensus 56 fVk~Le~~-G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~ 101 (165)
+++++-+. + ++..++|.+++++-+.+.+.+..-....+||.||-+.
T Consensus 8 li~~~~~~~~~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ 55 (204)
T 2iie_A 8 LIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEY 55 (204)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHH
Confidence 55566433 4 9999999999999999999887667778889887654
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.82 E-value=29 Score=23.25 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
..|.+|-..+..++. ....+..|++.|+.+++.|..++.
T Consensus 29 ~~i~~LE~~v~~le~-~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKE-LHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544432 334466777777777777776653
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.50 E-value=27 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=12.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~ 144 (165)
....|..||+.|+.+|+.|+.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655554
No 47
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=53.00 E-value=23 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 51 VDTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 51 FDT~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+.-.|++.+. ..|+|..+++.++.++-+++.+.+.
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~ 39 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALE 39 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45667788774 5689999999999999999887664
No 48
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=53.00 E-value=29 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+ +..|+|..+|+.+++++-+++.+.+.
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 2o97_B 4 SQLIDKIAAGADISKAAAGRALDAIIASVTESLK 37 (90)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 46789999999999999999888664
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.88 E-value=76 Score=24.42 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=0.0
Q ss_pred eeccHHHHHHHHhhCC
Q 031121 49 FLVDTLQLVRGLEAQG 64 (165)
Q Consensus 49 ~~FDT~~fVk~Le~~G 64 (165)
-..|-| ++.+|...|
T Consensus 24 ~~md~~-l~~rL~~Rd 38 (152)
T 3a7p_A 24 DSMDDL-LIRRLTDRN 38 (152)
T ss_dssp ----------------
T ss_pred hhHHHH-HHHHHHHhh
Confidence 344544 555554444
No 50
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=52.77 E-value=12 Score=28.80 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=10.5
Q ss_pred CCChHHHHHHHH
Q 031121 64 GVPSKQAEAITA 75 (165)
Q Consensus 64 Gft~eQAEai~~ 75 (165)
|||+.||+||.+
T Consensus 108 ~LSe~QA~AILd 119 (156)
T 3ku8_A 108 YLTEQQAQAILD 119 (156)
T ss_dssp ECCHHHHHHHHT
T ss_pred CCCHHHHHHHHH
Confidence 699999999965
No 51
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=50.55 E-value=26 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.7
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+ +..|+|..+|+.++.++-+.+.+.+.
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 1b8z_A 4 KELIDRVAKKAGAKKKDVKLILDTILETITEALA 37 (90)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 46789999999999999999887664
No 52
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.50 E-value=46 Score=23.14 Aligned_cols=39 Identities=5% Similarity=0.269 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 108 NLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 108 d~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.+..+|++.+..+ ++.-.-...+..|..|+++|+.+|++
T Consensus 32 ELs~vr~~ni~~e-skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFA-SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 23344456677888888888888876
No 53
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=50.44 E-value=38 Score=23.26 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 031121 122 HHFSMLQRETEK---LRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 122 sefa~Lr~e~ek---L~~ElekLkq~LreEI~kl 152 (165)
++|..||...+. -+.|++.-=..|++||.=+
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655443 4555665556666666544
No 54
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=49.93 E-value=22 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=26.7
Q ss_pred HHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+. ..|+|..+|+.+++++-+.+.+.+.
T Consensus 7 ~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~ 40 (93)
T 3rhi_A 7 TELIKNVAQNAEISQKEATVVVQTVVESITNTLA 40 (93)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 35666664 5699999999999999999887664
No 55
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=49.78 E-value=18 Score=26.55 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.+.+..||.++. ....|....+.|+.+|+++++.|+.
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 5 NAQIPELKSDLE-----KASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp --------CHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666664 4567777888888888888887764
No 56
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.93 E-value=14 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+...|..++..|..+++.|++.+.
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567888889999998888764
No 57
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.87 E-value=36 Score=23.22 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~L 145 (165)
.....|..||..|+.+|+.|+.++
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888766554
No 58
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=48.75 E-value=34 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=30.8
Q ss_pred eccHHHHHHHHh------hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 50 LVDTLQLVRGLE------AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 50 ~FDT~~fVk~Le------~~Gft~eQAEai~~al~~vl~~~le 86 (165)
..+.-.|++.+. ..|+|..+|+.+++++-+.+.+.+.
T Consensus 8 ~mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L~ 50 (108)
T 2np2_A 8 KVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLC 50 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 466778888884 6789999999999999999887664
No 59
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=48.46 E-value=85 Score=23.90 Aligned_cols=15 Identities=7% Similarity=-0.008 Sum_probs=6.6
Q ss_pred ChHHHHHHHHHHHHH
Q 031121 66 PSKQAEAITAAITEV 80 (165)
Q Consensus 66 t~eQAEai~~al~~v 80 (165)
|..|.+.+..++-+-
T Consensus 22 ~~~~le~v~~~~w~Y 36 (165)
T 1gs9_A 22 SGQRWELALGRFWDY 36 (165)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 334444444444443
No 60
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.26 E-value=24 Score=30.65 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhccchhh
Q 031121 138 IEKMRSELRYEIDKVTAGQRL 158 (165)
Q Consensus 138 lekLkq~LreEI~kl~a~vrL 158 (165)
-+.++.+|..+|..++..||.
T Consensus 43 ~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 43 EETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEE
Confidence 345666677777777776653
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.15 E-value=27 Score=25.71 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHHHHH
Q 031121 94 SKGEMQKTEMIQEANLSKFKSEVQSS---QEHHFSMLQRETEKLRSDIEKM 141 (165)
Q Consensus 94 TK~dle~~~~~qkad~a~LR~Em~~~---eksefa~Lr~e~ekL~~ElekL 141 (165)
.+.+-+.++-.++..+..||.++..+ ...-...|+..+..|..|++.-
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777776554 1223455666666666666654
No 62
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=46.88 E-value=33 Score=23.32 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.4
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+ +..|+|..+|+.+++++-+++.+.+.
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (94)
T 1p71_A 4 GELVDAVAEKASVTKKQADAVLTAALETIIEAVS 37 (94)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3566666 45689999999999999999887664
No 63
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=46.58 E-value=18 Score=21.26 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~ 75 (165)
.-|++|..-||++++|.....
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~ 26 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALE 26 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 458999999999998865433
No 64
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=46.51 E-value=33 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=26.6
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 54 ~~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
-.|++.+ +..|++..+|+.+++++-+++.+.+.
T Consensus 4 ~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~ 37 (99)
T 3c4i_A 4 AELIDVLTQKLGSDRRQATAAVENVVDTIVRAVH 37 (99)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 46689999999999999999887664
No 65
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=45.87 E-value=11 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=14.6
Q ss_pred hCCCChHHHHHHHHHHHHH
Q 031121 62 AQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 62 ~~Gft~eQAEai~~al~~v 80 (165)
+.-||++||++++.+.+.+
T Consensus 9 egpFtReQA~aV~~~Y~NV 27 (87)
T 2hjj_A 9 PGPFTRRQAQAVTTTYSNI 27 (87)
T ss_dssp -CCCCHHHHHHHHHHCTTE
T ss_pred CCCccHHHHHHHHHHhccc
Confidence 3349999999999886654
No 66
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=45.32 E-value=31 Score=23.82 Aligned_cols=48 Identities=15% Similarity=0.403 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 94 SKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 94 TK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.|++++.....++..+..|..|+... |.+++|.-+|-|.|.=++.+++
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdts------------E~VQrDFVkLSQsLQvqLE~IR 53 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVS------------EQVQRDFVKLSQTLQVQLERIR 53 (79)
T ss_dssp ---------------CHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777788888887543 4555555555555555555444
No 67
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.19 E-value=44 Score=23.12 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
+..|+.+.+.+..+++.|+++++
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444544444444
No 68
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=45.06 E-value=70 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.1
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
...+.+++.|...|||.++...+.
T Consensus 46 l~~l~~I~~l~~~G~~l~~I~~~l 69 (109)
T 1r8d_A 46 LERLQQILFFKEIGFRLDEIKEML 69 (109)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
Confidence 556789999999999988765554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.01 E-value=72 Score=27.27 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.+....+.+++.+++ +.+.++.+.+.+..+++..++.+.+
T Consensus 435 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 435 RDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHHH
Confidence 344444444444433 4455555555555555555554444
No 70
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.73 E-value=35 Score=18.69 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~Lr 146 (165)
|-.|.|.|+..+-+|+.+|+
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777665
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.62 E-value=24 Score=25.44 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~L 145 (165)
+..|+.|+++|+.+++.|+-+|
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777766665
No 72
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=44.32 E-value=89 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.+.|+.++..|+..-+.|...+|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 73
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=42.35 E-value=35 Score=19.26 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=16.0
Q ss_pred HHHHHHHhhCCCChHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai 73 (165)
-..+++|..-||++++|...
T Consensus 5 ~~~i~~L~~mGf~~~~a~~A 24 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQA 24 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34688999999999998554
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.45 E-value=22 Score=25.61 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~Lr 146 (165)
..+.+.++|+.|+++|+.+++
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888764
No 75
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.79 E-value=30 Score=22.09 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMR 142 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLk 142 (165)
.|..+++.|..++..|+
T Consensus 33 ~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 33 TLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 76
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.63 E-value=55 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFV 93 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lv 93 (165)
...+++|..-||++++|.....+ . +.+++.+..-|.
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~---t-~~nve~A~ewL~ 65 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQL---N-HMSVPQAMEWLI 65 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH---T-TSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH---h-CCCHHHHHHHHH
Confidence 45678899999999888655443 2 445554444333
No 77
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.53 E-value=1.3e+02 Score=23.67 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSELR 146 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~Lr 146 (165)
.+.|+.++..|+...+.|+.+++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555444444443
No 78
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=40.45 E-value=26 Score=31.52 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=14.6
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 117 QSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 117 ~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
..+.+-|...++.|.+.|..+++.++.-|
T Consensus 411 ~rLt~le~~kl~~E~~~l~~~i~~l~~iL 439 (470)
T 3ilw_A 411 RRLAALERQRIIDDLAKIEAEIADLEDIL 439 (470)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555554443
No 79
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.95 E-value=20 Score=21.98 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~a 76 (165)
..-+++|..-||++++|.....+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 35689999999999998765543
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.92 E-value=53 Score=23.87 Aligned_cols=9 Identities=11% Similarity=0.560 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 031121 134 LRSDIEKMR 142 (165)
Q Consensus 134 L~~ElekLk 142 (165)
|..++.+++
T Consensus 89 lE~eL~~~r 97 (131)
T 3tnu_A 89 VEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 81
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=39.52 E-value=54 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=24.6
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 117 ~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
.......+..|+...+.|+..|.+|+.++.+-....
T Consensus 23 ~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 23 ESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444566677778888888888888887655443
No 82
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.09 E-value=76 Score=23.93 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchh
Q 031121 130 ETEKLRSDIEKMRSELRYEIDKVTAGQR 157 (165)
Q Consensus 130 e~ekL~~ElekLkq~LreEI~kl~a~vr 157 (165)
+..++..|+|.|-+.|=+|-+++=|+-|
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar 95 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADAR 95 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888888766654
No 83
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=39.04 E-value=26 Score=31.88 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=9.0
Q ss_pred CCChHHHHHHHH
Q 031121 64 GVPSKQAEAITA 75 (165)
Q Consensus 64 Gft~eQAEai~~ 75 (165)
|||+.||++|.+
T Consensus 419 ~lse~Qa~aIl~ 430 (500)
T 3lpx_A 419 YLTAEQAKAIVD 430 (500)
T ss_dssp --CHHHHHHHHT
T ss_pred CCCHHHHHHHHH
Confidence 699999999965
No 84
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.60 E-value=32 Score=19.04 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~L 145 (165)
+.+|.-|++.|...|..|+|++
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 3456667777777777777765
No 85
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.57 E-value=76 Score=20.26 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~L 145 (165)
.|+.++..|+.++..|++-|
T Consensus 41 ~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 41 ALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 86
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.26 E-value=63 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~L 145 (165)
+++..|..-.++++.|++.|+.+|
T Consensus 44 s~~~dl~~s~~~l~ae~~~L~~~l 67 (206)
T 3oa7_A 44 SEYNDLTKSHNTLSKELDNLRSRF 67 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555555555555555543
No 87
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.91 E-value=74 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+...|..+++.|+.+|+.|+..
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888665554
No 88
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.16 E-value=19 Score=22.95 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~ 144 (165)
..|..++..|+.+++.|+.+
T Consensus 37 ~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666554
No 89
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=36.94 E-value=1.7e+02 Score=25.60 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---------------hhhhhhhhHH
Q 031121 65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSS---------------QEHHFSMLQR 129 (165)
Q Consensus 65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~---------------eksefa~Lr~ 129 (165)
+.-.|||+|++.+..-... .-|.-+.++...+...+..+|.++..+ +..+...++.
T Consensus 138 ~dL~qaEav~dli~a~t~~---------~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~ 208 (476)
T 3gee_A 138 IDLLQAEAIGEMIHARTES---------AYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTM 208 (476)
T ss_dssp SCHHHHHHHHHHHHCCSHH---------HHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCHH---------HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHH
Confidence 4558999998875432211 222223333334445566666665432 1122334555
Q ss_pred HHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSE 144 (165)
Q Consensus 130 e~ekL~~ElekLkq~ 144 (165)
....++.+++++...
T Consensus 209 ~i~~l~~~l~~~~~~ 223 (476)
T 3gee_A 209 QIETLRSEVNRLIDS 223 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665543
No 90
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.89 E-value=1.2e+02 Score=21.94 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 106 kad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.-.++.++.|..-. ..++..++.....|+.+++.|+..|++
T Consensus 43 eE~~aql~Re~~eK-~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 43 EEQLAESRRQYEEK-NKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566655433 245677788888888888888877754
No 91
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.39 E-value=1.2e+02 Score=21.81 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=21.5
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.+.+.+++.|...|||.++...+...
T Consensus 44 l~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 44 LNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 56778999999999999987766653
No 92
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=35.61 E-value=14 Score=26.86 Aligned_cols=78 Identities=12% Similarity=0.251 Sum_probs=39.7
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ 131 (165)
.+-.|-+.| .|+|++|-.-| +-.+.-+..- .--++.-..-...+.+|-.++..+ ..+...|+.|+
T Consensus 17 ~v~elN~~L--~~Ls~~e~~~l-K~~RR~lKNR-----------~yAq~CR~rk~~~~~~LE~e~~~L-~~e~e~L~~En 81 (107)
T 3a5t_A 17 SVRELNQHL--RGLSKEEIIQL-KQRRRTLKNR-----------GYAASCRVKRVTQKEELEKQKAEL-QQEVEKLASEN 81 (107)
T ss_dssp CHHHHHHTT--TTCCHHHHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTTT-SSTTTTTTSTT
T ss_pred CHHHHHHHH--hCCCHHHHHHH-HHHHHhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344566666 58888884333 3333322221 111111111123444555555444 46667777777
Q ss_pred HHHHHHHHHHHHH
Q 031121 132 EKLRSDIEKMRSE 144 (165)
Q Consensus 132 ekL~~ElekLkq~ 144 (165)
..++.|++.++++
T Consensus 82 ~~l~~E~~~lk~k 94 (107)
T 3a5t_A 82 ASMKLELDALRSK 94 (107)
T ss_dssp SHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.59 E-value=94 Score=21.05 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKM 141 (165)
Q Consensus 130 e~ekL~~ElekL 141 (165)
++..|+.+++++
T Consensus 55 eI~~LqseLDKf 66 (72)
T 3nmd_A 55 LIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 94
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=34.52 E-value=81 Score=21.66 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.1
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
.+.+.+++.|...|||.++...+..
T Consensus 45 l~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 45 LDRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 5677899999999999987665543
No 95
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.43 E-value=20 Score=23.88 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhh
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAH 90 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~ 90 (165)
.-|..|-.-||+++||..-+++ .+.|+|.+..
T Consensus 21 e~V~~LvsMGFs~~qA~kALKa----t~~NvErAaD 52 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKK----KGENIEQILD 52 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH----HCSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH----cCCCHHHHHH
Confidence 3477888889999999776665 4555665443
No 96
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.32 E-value=87 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=14.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+...|..++..|+.++..|+.+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665554
No 97
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=33.99 E-value=36 Score=32.18 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=13.1
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 117 QSSQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 117 ~~~eksefa~Lr~e~ekL~~ElekLk 142 (165)
..+.+-|...++.|.+.|..+++.|+
T Consensus 397 ~rLt~le~~kl~~E~~eL~~~i~~l~ 422 (716)
T 1zvu_A 397 RHLAKLEEMKIRGEQSELEKERDQLQ 422 (716)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544
No 98
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.90 E-value=1.1e+02 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 125 SMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
+.++...-|+++|++.+|.+...|+..+
T Consensus 76 ~el~d~~lR~~AEfeN~RkR~~rE~e~~ 103 (213)
T 4ani_A 76 SEMEHRYLRLYADFENFRRRTRQEMEAA 103 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666555544
No 99
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.60 E-value=50 Score=27.38 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLk 142 (165)
..++.|+++|+.|+++|+
T Consensus 78 k~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444455555555543
No 100
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=33.29 E-value=1.2e+02 Score=23.63 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=11.9
Q ss_pred CCCcceeccHHHHHHHHh
Q 031121 44 NGKRAFLVDTLQLVRGLE 61 (165)
Q Consensus 44 ~~~~~~~FDT~~fVk~Le 61 (165)
.|...+.+|+-.+-..|+
T Consensus 46 kGq~L~~ld~~~~~~~l~ 63 (277)
T 2f1m_A 46 AGVSLYQIDPATYQATYD 63 (277)
T ss_dssp TTSCSEEECCHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHH
Confidence 345557788887766654
No 101
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=33.27 E-value=34 Score=23.60 Aligned_cols=32 Identities=9% Similarity=0.444 Sum_probs=25.8
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|++.+ +..|+|..+|+.++.++-+++.+.+.
T Consensus 5 eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~ 37 (99)
T 1exe_A 5 ELIKAIAQDTGLTQVSVSKMLASFEKIITETVA 37 (99)
T ss_dssp HHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456665 46789999999999999999887664
No 102
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.26 E-value=85 Score=19.43 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
+-+..|++...+|-.|.+.-.++|+.-|+++..
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777888888888888888888887653
No 103
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.86 E-value=46 Score=21.52 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHHhhCCCChHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai 73 (165)
...|++|..-||++++|...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~A 29 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQA 29 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46789999999999998553
No 104
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.40 E-value=1.9e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
....+.+++.|.+.|||-++...+.
T Consensus 49 ~~~~l~~i~~l~~~g~~l~~i~~~~ 73 (278)
T 1r8e_A 49 QLIHLDLIKSLKYIGTPLEEMKKAQ 73 (278)
T ss_dssp GGGHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4788999999999999998865554
No 105
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.58 E-value=2.6e+02 Score=23.62 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 031121 104 IQEANLSKFKSEVQSS 119 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~ 119 (165)
.+...|+++++-+..+
T Consensus 401 ~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHH
Confidence 3344455554444333
No 106
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.17 E-value=95 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 126 MLQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
.|++...+|..|.+...++|++-|+++.
T Consensus 18 ~LQTrfARLLaEy~ssQ~KLKqRit~LE 45 (74)
T 3swf_A 18 LLQTRFARILAEYESMQQKLKQRLTKVE 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 107
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.06 E-value=38 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCChHHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~a 76 (165)
-.-+++|..-||++++|+....+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRV 52 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34579999999999999876554
No 108
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=28.92 E-value=2.4e+02 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=10.3
Q ss_pred HHHhhCCCChHHH
Q 031121 58 RGLEAQGVPSKQA 70 (165)
Q Consensus 58 k~Le~~Gft~eQA 70 (165)
..|.+.|+++++|
T Consensus 211 e~l~~~Gl~~~~a 223 (338)
T 1np3_A 211 ETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHTTCCHHHH
T ss_pred HHHHHcCCCHHHH
Confidence 3447899999988
No 109
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.65 E-value=32 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.123 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~a 76 (165)
-..+++|..-||++++|.....+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLN 32 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34688999999999998655443
No 110
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.52 E-value=1.7e+02 Score=23.04 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
..|+.+|++|+.|-++.-++|
T Consensus 162 ~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 162 EHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566667776666665554
No 111
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.49 E-value=67 Score=19.72 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.|.+|=.++++.+.+++.+.+.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg 31 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYG 31 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999877654
No 112
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=28.35 E-value=3e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=29.0
Q ss_pred cceeccH---HHHHHHHhhCC-CChHHHHHHHHHHHHHHHh
Q 031121 47 RAFLVDT---LQLVRGLEAQG-VPSKQAEAITAAITEVLND 83 (165)
Q Consensus 47 ~~~~FDT---~~fVk~Le~~G-ft~eQAEai~~al~~vl~~ 83 (165)
..+..|- .+.++.+.+.| +|++.|++|.+++.++...
T Consensus 30 ~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~ 70 (462)
T 2e9f_A 30 ALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEE 70 (462)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhh
Confidence 3444454 47888899999 8999999999999887744
No 113
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=27.90 E-value=96 Score=21.46 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031121 136 SDIEKMRSELRYEIDKV 152 (165)
Q Consensus 136 ~ElekLkq~LreEI~kl 152 (165)
.+++++..+||.+|.++
T Consensus 21 ~~~~~~d~ELR~~i~~i 37 (81)
T 3g43_E 21 GNLEQANEELRAIIKKI 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 47778888888888876
No 114
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.83 E-value=1.3e+02 Score=19.80 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=20.2
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 51 VDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 51 FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
+..+.|++.|+..|||-++=..+..
T Consensus 3 l~rL~~I~~lr~lGfsL~eIk~~l~ 27 (99)
T 1q08_A 3 LQRLKFIRHARQLGFSLESIRELLS 27 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4678999999999999987555554
No 115
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.79 E-value=45 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~a 76 (165)
..|++|..-||++++|.....+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRA 32 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4678999999999998655443
No 116
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=27.69 E-value=72 Score=25.02 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 51 VDTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 51 FDT~~fVk~Le-~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+.-.|++.+. ..|+|..+++.+++++-+.+.+.+.
T Consensus 47 Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~~i~~~L~ 83 (204)
T 2iie_A 47 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALE 83 (204)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45556888885 6789999999999999999887664
No 117
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=27.48 E-value=2.7e+02 Score=23.19 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLk 142 (165)
.||..+-.+.|....+++. +..-++.+++.++++-|..-+....+.|...+.++..++...+
T Consensus 75 d~Fg~e~r~~L~q~~~~lf------------------~s~~~~yan~~~~~SYlk~ed~~~~akL~~~~~~l~~em~e~k 136 (264)
T 3rh3_A 75 DYFNPEVRQNLKQNYAGLF------------------NVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYK 136 (264)
T ss_dssp TTSCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888877766653 3344678888888888877666677888888888888888888
Q ss_pred HHHHHHHH
Q 031121 143 SELRYEID 150 (165)
Q Consensus 143 q~LreEI~ 150 (165)
+.+=+.+.
T Consensus 137 ~~ifd~ls 144 (264)
T 3rh3_A 137 QVIFDILS 144 (264)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77765554
No 118
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=27.44 E-value=94 Score=17.90 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 031121 108 NLSKFKSEVQ 117 (165)
Q Consensus 108 d~a~LR~Em~ 117 (165)
.++.+|+|+.
T Consensus 3 alaqikkeia 12 (35)
T 1rh4_A 3 ALAQIKKEIA 12 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555553
No 119
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=27.40 E-value=1.3e+02 Score=21.99 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=20.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAIT 74 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~ 74 (165)
..+.+.+++.|...|||-++...+.
T Consensus 47 dl~~l~~I~~lr~~G~sl~~I~~~l 71 (146)
T 3hh0_A 47 DLYVLQQIQSFKHLGFSLGEIQNII 71 (146)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567899999999999998765543
No 120
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.99 E-value=1.3e+02 Score=19.27 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~ 144 (165)
.+...|..+|..|..+|+.|+.+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655554
No 121
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=26.72 E-value=86 Score=19.24 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=13.6
Q ss_pred HHHHHHhhCCC-ChHHHHHH
Q 031121 55 QLVRGLEAQGV-PSKQAEAI 73 (165)
Q Consensus 55 ~fVk~Le~~Gf-t~eQAEai 73 (165)
.-+++|.+-|| +++++...
T Consensus 14 ~~l~~L~~MGF~~~~~~~~A 33 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQA 33 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 46799999999 66655443
No 122
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=26.40 E-value=2e+02 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031121 127 LQRETEKLRSDIEKMRSELRYEIDKVT 153 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~LreEI~kl~ 153 (165)
++..+-|+++|++.+|.+...|...+.
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~ 84 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRRTELDIEKAH 84 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777776665543
No 123
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=26.26 E-value=2.2e+02 Score=21.86 Aligned_cols=15 Identities=7% Similarity=-0.008 Sum_probs=6.9
Q ss_pred ChHHHHHHHHHHHHH
Q 031121 66 PSKQAEAITAAITEV 80 (165)
Q Consensus 66 t~eQAEai~~al~~v 80 (165)
|..|.+-+..++-+-
T Consensus 22 ~~s~~e~v~~~~~~y 36 (191)
T 1nfn_A 22 SGQRWELALGRFWDY 36 (191)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 444555555554443
No 124
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=26.18 E-value=77 Score=19.45 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.|.+|=..+++++.+++.+.+.
T Consensus 9 ~Grs~eqk~~L~~~it~~~~~~lg 32 (65)
T 3ry0_A 9 EGRSPQEVAALGEALTAAAHETLG 32 (65)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 489999999999999999877553
No 125
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=25.54 E-value=60 Score=27.51 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+.|++.|+++++|+.+++++...
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~lv~a 36 (333)
T 1nxu_A 12 FNRVLISRGVDSETADACAEMFART 36 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446899999999999999998775
No 126
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=25.48 E-value=60 Score=27.67 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+.|++.|+++++|+.+++++...
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~Lv~a 36 (344)
T 1rfm_A 12 IIDVLKKFGVPEEDAKITADVFVDA 36 (344)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999998775
No 127
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.31 E-value=45 Score=22.93 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVS 94 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvT 94 (165)
-..|++|..-||++++|+.... .-+.+++.+..-|.+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~----~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALK----SNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH----HTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHH----HcCCCHHHHHHHHHH
Confidence 5678999999999999865432 233445544444443
No 128
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=25.13 E-value=2.9e+02 Score=24.07 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=11.9
Q ss_pred CCChHHHHHHHHHHH
Q 031121 64 GVPSKQAEAITAAIT 78 (165)
Q Consensus 64 Gft~eQAEai~~al~ 78 (165)
++...|||+|++.+.
T Consensus 149 k~Dl~qaE~i~dli~ 163 (482)
T 1xzp_A 149 KMDLTSAEAVRDLIE 163 (482)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh
Confidence 378899999988763
No 129
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.05 E-value=1.5e+02 Score=19.72 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031121 107 ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (165)
Q Consensus 107 ad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a 154 (165)
+=|.++.+|+ +.-.+..|.-.|+|+++|-.-+--+++=+..+.-
T Consensus 18 ~VIeEmgkdI----rpTYaGsk~~~ERLkR~I~hAr~LVrECl~E~er 61 (65)
T 2kw6_A 18 AIIEELGKEI----RPTYAGSKSAMERLKRGIIHARGLVRECLAETER 61 (65)
T ss_dssp HHHHHHTTTH----HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccc----chhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777 5667778888999999999988888876655443
No 130
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=25.02 E-value=62 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.9
Q ss_pred eeccHHH-H-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTLQ-L-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~~-f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|.++ | .+.|++.|+++++|+.+++++...
T Consensus 13 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 46 (343)
T 1wtj_A 13 VSYPQLIDLLRRIFVVHGTSPEVADVLAENCASA 46 (343)
T ss_dssp ECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4556553 3 445899999999999999998775
No 131
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.83 E-value=98 Score=20.02 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031121 100 KTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 100 ~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L 145 (165)
...|..+-...+|+.|...+.+. =.+-.+-+.++|++=-++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~-----lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKS-----LEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 34577777777777776544333 112234556666554433
No 132
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=24.69 E-value=63 Score=27.56 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.4
Q ss_pred HHH-HHHhhCCCChHHHHHHHHHHHHH
Q 031121 55 QLV-RGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 55 ~fV-k~Le~~Gft~eQAEai~~al~~v 80 (165)
+|+ +-|++.|+++++|+.+++++.+.
T Consensus 10 ~~~~~il~~~G~~~~~A~~vA~~lv~a 36 (344)
T 2x06_A 10 KLIIDVLKKFGVPEEDAKITADVFVDA 36 (344)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344 45899999999999999998765
No 133
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.69 E-value=1.3e+02 Score=18.65 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIE 139 (165)
Q Consensus 124 fa~Lr~e~ekL~~Ele 139 (165)
+++||.|+.+|.+|+.
T Consensus 33 ianlrdeiarleneva 48 (52)
T 3he5_B 33 IANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666666666653
No 134
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=24.64 E-value=63 Score=27.77 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=25.9
Q ss_pred ceeccHH-HH-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 48 AFLVDTL-QL-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 48 ~~~FDT~-~f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+.+|.+ .| .+.|++.|+++++|+.+++++...
T Consensus 25 ~v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 59 (357)
T 3uoe_A 25 RLPPARLRNLSVALLEKRGVPADSARLQANLLLEA 59 (357)
T ss_dssp EECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566655 34 457899999999999999998775
No 135
>1vbi_A Type 2 malate/lactate dehydrogenase; malate dehydrogenase, NAD(P) binding protein, thermus thermo HB8, structural genomics; HET: NAD; 1.80A {Thermus thermophilus} PDB: 1x0a_A
Probab=24.63 E-value=63 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+.|++.|+++++|+.+++++...
T Consensus 12 ~~~~l~~~G~~~~~A~~vA~~lv~a 36 (344)
T 1vbi_A 12 AEALLRKAGADEPSAKAVAWALVEA 36 (344)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445899999999999999998775
No 136
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.55 E-value=68 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHhhCCCChHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~ 75 (165)
.|++|..-||++++|+....
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~ 31 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALA 31 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 57899999999998866544
No 137
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.48 E-value=1.8e+02 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRY 147 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~Lre 147 (165)
.|-+.|+.+++.|+.|+..|++-|.+
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888889998888887653
No 138
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.32 E-value=55 Score=21.71 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCChHHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~a 76 (165)
...|++|..-||++++|.....+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKA 52 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 56689999999999999654443
No 139
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.05 E-value=95 Score=20.55 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 031121 127 LQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 127 Lr~e~ekL~~ElekLkq~L 145 (165)
|..+.+.|+.+.+.|+++|
T Consensus 59 l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 59 HQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 140
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=24.02 E-value=93 Score=18.41 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.|.+|=.++++++.+++.+.+.
T Consensus 9 ~grs~e~k~~l~~~i~~~l~~~lg 32 (62)
T 1otf_A 9 EGRTDEQKETLIRQVSEAMANSLD 32 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 488999999999999998877554
No 141
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=24.00 E-value=66 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=24.3
Q ss_pred eeccHH-HH-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTL-QL-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~-~f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|.+ .| .+.|++.|+++++|+.+++++...
T Consensus 12 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 45 (358)
T 1z2i_A 12 ARLDELERFCRAVFLAVGTDEETADAATRAMMHG 45 (358)
T ss_dssp ECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344554 23 445899999999999999998775
No 142
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.00 E-value=1.7e+02 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121 124 FSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~LreEI~kl 152 (165)
++.+..|.++|..+|+.|+..-.+++++-
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q~~~lske 66 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVHSQKLSKE 66 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45667777788888888877766555543
No 143
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=23.96 E-value=8.4 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHhhhcccceee
Q 031121 6 RVVKLVADSGVRVT 19 (165)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (165)
+.-+||+.||+|--
T Consensus 6 riDRIgs~SglGC~ 19 (26)
T 1yk0_E 6 RMDRIGAQSGLGCN 19 (26)
T ss_dssp CCCCCSSSCCSCCC
T ss_pred cccccccccCCCCC
Confidence 45679999999975
No 144
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=23.85 E-value=67 Score=27.55 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.0
Q ss_pred eeccHHH-H-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTLQ-L-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~~-f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|.++ | .+.|++.|+++++|+.+++++...
T Consensus 14 v~~~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 47 (360)
T 1v9n_A 14 VPKDRLFSFIVRVLTKLGVPEEDAKIVADNLVMA 47 (360)
T ss_dssp ECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566653 4 445899999999999999998775
No 145
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.74 E-value=2.1e+02 Score=20.76 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 031121 99 QKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMR 142 (165)
Q Consensus 99 e~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLk 142 (165)
.....+++..+..|..|+.... ..-.....|++.|+.+++.++
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r-~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQ-HLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666665433 334444556667777766653
No 146
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.72 E-value=50 Score=21.30 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~a 76 (165)
..+++|..-||++++|+....+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~ 42 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALAS 42 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999999999998765443
No 147
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=23.70 E-value=67 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=26.3
Q ss_pred ceeccHH-HH-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 48 AFLVDTL-QL-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 48 ~~~FDT~-~f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+.+|.+ .| .+.|++.|+++++|+.+++++...
T Consensus 8 ~v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 42 (365)
T 3i0p_A 8 NVSIDTIKEFMYQVLLKVGSDEENARMVRDTLIAA 42 (365)
T ss_dssp EECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5667766 34 457799999999999999998765
No 148
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=23.56 E-value=84 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=13.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH
Q 031121 119 SQEHHFSMLQRETEKLRSDIEKMRS 143 (165)
Q Consensus 119 ~eksefa~Lr~e~ekL~~ElekLkq 143 (165)
+.+-|...++.|.+.|..+++.++.
T Consensus 693 Lt~le~~kl~~E~~~l~~~i~~l~~ 717 (767)
T 2xkj_E 693 LAKLEEMEIRHEQDELSAKAAIIRE 717 (767)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555543
No 149
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.56 E-value=1.9e+02 Score=24.42 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 031121 130 ETEKLRSDIEKMRSEL 145 (165)
Q Consensus 130 e~ekL~~ElekLkq~L 145 (165)
..+.++..|++|++++
T Consensus 34 ~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 34 MWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 150
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=23.27 E-value=33 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHhhCCCChHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai 73 (165)
-|.+|..-||++.+|...
T Consensus 7 aI~rL~~mGF~~~~a~~A 24 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQA 24 (47)
T ss_dssp HHTTTTTTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 467888888988887543
No 151
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=22.89 E-value=16 Score=20.66 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.1
Q ss_pred hHHHHhhhcccceee
Q 031121 5 KRVVKLVADSGVRVT 19 (165)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (165)
++.-+||+.||+|--
T Consensus 10 ~riDRIgs~SglGC~ 24 (28)
T 3n57_C 10 GRMDRIGAQSGLGCN 24 (28)
T ss_pred cccccccccccCCcC
Confidence 456789999999865
No 152
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=22.86 E-value=58 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=24.6
Q ss_pred eeccHH-HH-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTL-QL-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~-~f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|.+ .| .+.|++.|+++++|+.+++++...
T Consensus 5 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 38 (339)
T 4h8a_A 5 ISRETLHQLIENKLCQAGLKREHAATVAEVLVYA 38 (339)
T ss_dssp ECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445544 34 457799999999999999998775
No 153
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=28.52 E-value=18 Score=25.32 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 103 MIQEANLSKFKSEVQSSQ-EHHF---SMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 103 ~~qkad~a~LR~Em~~~e-ksef---a~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
.+.+.++-+||.|+...- -.|| +.|+...+++..|++++++.+...-.
T Consensus 23 ~~Lk~Ei~~lk~E~~stSaQDEFAKWAKL~Rk~dKl~~ele~~~k~l~~~k~ 74 (84)
T 3b2e_E 23 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENK 74 (84)
Confidence 345677888888886542 2344 46777777788888777776654433
No 154
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.82 E-value=69 Score=20.68 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=15.7
Q ss_pred HHHHHhhCCCChHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~ 75 (165)
.+++|.+-||++++|+....
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~ 31 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALA 31 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 57899999999988755444
No 155
>1yk1_E Natriuretic peptides B; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.90A {Homo sapiens}
Probab=22.74 E-value=16 Score=20.34 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHhhhcccceee
Q 031121 6 RVVKLVADSGVRVT 19 (165)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (165)
+.-+||++||+|--
T Consensus 6 riDRIgs~SglGC~ 19 (26)
T 1yk1_E 6 KMDRISSSSGLGCK 19 (26)
T ss_dssp CCSSCSSSCCSCCC
T ss_pred ccccccccccCCCC
Confidence 45679999999975
No 156
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.70 E-value=1.2e+02 Score=17.66 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031121 128 QRETEKLRSDIEKMRSE 144 (165)
Q Consensus 128 r~e~ekL~~ElekLkq~ 144 (165)
+.+++.|+++-..|+++
T Consensus 13 qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 33444444444444433
No 157
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=22.61 E-value=1.3e+02 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=10.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 031121 121 EHHFSMLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 121 ksefa~Lr~e~ekL~~ElekLkq~ 144 (165)
+.+...|+.|.+.+..+++.|+.-
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~i 476 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHI 476 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 158
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.48 E-value=2.1e+02 Score=20.28 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 031121 129 RETEKLRSDIEKMRSELRYEIDKVTAGQR 157 (165)
Q Consensus 129 ~e~ekL~~ElekLkq~LreEI~kl~a~vr 157 (165)
.+..++..|||.|-..|=+|-+++=++-|
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777666666655443
No 159
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.27 E-value=3.2e+02 Score=22.24 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhh--hhhhhHHHHHHHHHHHHHHHH---------HHHHHHHhhccc
Q 031121 104 IQEANLSKFKSEVQSSQEH--HFSMLQRETEKLRSDIEKMRS---------ELRYEIDKVTAG 155 (165)
Q Consensus 104 ~qkad~a~LR~Em~~~eks--efa~Lr~e~ekL~~ElekLkq---------~LreEI~kl~a~ 155 (165)
++-..+..-|.-|..++.. .+..+|...++|..+|.+|+. .|.+|+.+..++
T Consensus 84 ~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae 146 (234)
T 3plt_A 84 QFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAE 146 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 3334444555555444333 356777788888888888884 677776655544
No 160
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=22.24 E-value=3.9e+02 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHHHHh
Q 031121 54 LQLVRGLEAQG-VPSKQAEAITAAITEVLND 83 (165)
Q Consensus 54 ~~fVk~Le~~G-ft~eQAEai~~al~~vl~~ 83 (165)
.+.++.+.+.| +|++.|++|..++.++...
T Consensus 45 ~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~ 75 (468)
T 1k7w_A 45 MAYAKALEKAGILTKTELEKILSGLEKISEE 75 (468)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhh
Confidence 36788888999 8999999999999887744
No 161
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.13 E-value=2.8e+02 Score=21.51 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=7.7
Q ss_pred HHhhccchhhcccc
Q 031121 149 IDKVTAGQRLDLNL 162 (165)
Q Consensus 149 I~kl~a~vrLDlNL 162 (165)
+.|-.++...|||.
T Consensus 130 lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 130 SEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHH
Confidence 34445666666554
No 162
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.09 E-value=89 Score=18.70 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.+.+|-..+++.+.+++.+.+.
T Consensus 10 ~g~s~eqk~~l~~~lt~~l~~~lg 33 (64)
T 3abf_A 10 EGRPPEKKRELVRRLTEMASRLLG 33 (64)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999998876543
No 163
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.06 E-value=1.1e+02 Score=17.93 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.+.+|-..+++++.+++.+.+.
T Consensus 12 ~g~s~e~k~~l~~~l~~~l~~~lg 35 (63)
T 2x4k_A 12 EGRSDEQLKNLVSEVTDAVEKTTG 35 (63)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999998876543
No 164
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=21.98 E-value=62 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=23.6
Q ss_pred eccHH-HH-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 50 LVDTL-QL-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 50 ~FDT~-~f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+|.+ .| .+.|++.|+++++|+.+++++...
T Consensus 6 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 38 (351)
T 1xrh_A 6 SRETLHQLIENKLCQAGLKREHAATVAEVLVYA 38 (351)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34444 23 445799999999999999998775
No 165
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.82 E-value=37 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~L 145 (165)
...|..+|..|+.+++.|++.+
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888887776543
No 166
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.70 E-value=90 Score=19.30 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhHH
Q 031121 64 GVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 64 Gft~eQAEai~~al~~vl~~~le 86 (165)
|.|.+|=.++++.+.+++.+.+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg 35 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLN 35 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999877654
No 167
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.68 E-value=2.3e+02 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121 122 HHFSMLQRETEKLRSDIEKMRSELRYEID 150 (165)
Q Consensus 122 sefa~Lr~e~ekL~~ElekLkq~LreEI~ 150 (165)
...+.|+.++++|+.|-|+|+++..+=+.
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999998888887765443
No 168
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=21.60 E-value=82 Score=21.29 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|-|.+|=+.+++.+++++.+++.
T Consensus 9 EGRT~EQK~~lI~~VT~a~~eslg 32 (70)
T 3ej9_B 9 TGLSVARKQQLIRDVIDVTNKSIG 32 (70)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 169
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.57 E-value=1.1e+02 Score=18.02 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 63 QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 63 ~Gft~eQAEai~~al~~vl~~~le 86 (165)
.|.|.+|=..+++++.+++.+.+.
T Consensus 9 ~grs~eqk~~l~~~i~~~l~~~lg 32 (61)
T 2opa_A 9 EGRTDEQKRNLVEKVTEAVKETTG 32 (61)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999998877553
No 170
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.25 E-value=55 Score=26.59 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhc
Q 031121 141 MRSELRYEIDKVT 153 (165)
Q Consensus 141 Lkq~LreEI~kl~ 153 (165)
-..+|...|+|++
T Consensus 191 ~~~qly~~vt~i~ 203 (250)
T 2ve7_C 191 YVAQLYHQVSKIE 203 (250)
T ss_dssp HHHHHHHHHHCCE
T ss_pred HHHHHHHHHhhce
Confidence 3334444444443
No 171
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.16 E-value=1.2e+02 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~L 145 (165)
.+..+.+.|+.+.+.|+++|
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 172
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.76 E-value=61 Score=20.15 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 031121 125 SMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 125 a~Lr~e~ekL~~ElekLkq~L 145 (165)
..|...++.|...|+.|++.|
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555443
No 173
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.71 E-value=2.7e+02 Score=20.86 Aligned_cols=37 Identities=5% Similarity=0.199 Sum_probs=17.9
Q ss_pred HHhhHHHHhhhhhhhhHHHH-----------HHHHHHHHHHHHHHHHH
Q 031121 81 LNDSLENVAHTFVSKGEMQK-----------TEMIQEANLSKFKSEVQ 117 (165)
Q Consensus 81 l~~~le~~~~~lvTK~dle~-----------~~~~qkad~a~LR~Em~ 117 (165)
+..++..++.|++.|+..-. .+-.|...|.+|-.|+.
T Consensus 55 f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~ 102 (151)
T 1yke_B 55 FSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLV 102 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33344444556666654211 22244555666655554
No 174
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.69 E-value=1.2e+02 Score=18.04 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHH
Q 031121 123 HFSMLQRETEKL 134 (165)
Q Consensus 123 efa~Lr~e~ekL 134 (165)
+++.|+.+|+.|
T Consensus 22 eIa~Lk~eN~eL 33 (37)
T 1t6f_A 22 EIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 344444444433
No 175
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Probab=20.31 E-value=69 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.2
Q ss_pred eeccHHH-H-HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTLQ-L-VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~~-f-Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|.++ | .+.|++.|+++++|+.+++++...
T Consensus 29 v~~~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 62 (385)
T 2g8y_A 29 FDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAA 62 (385)
T ss_dssp ECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5566653 4 445799999999999999998775
No 176
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.29 E-value=1.3e+02 Score=17.40 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031121 124 FSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 124 fa~Lr~e~ekL~~ElekLkq~L 145 (165)
...|-.++..|..|+++|+.-|
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3455667777777777776543
No 177
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=20.09 E-value=94 Score=22.95 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=27.0
Q ss_pred cHHHHHHHHhh-CCC-ChHHHHHHHHHHHHHHHhhH
Q 031121 52 DTLQLVRGLEA-QGV-PSKQAEAITAAITEVLNDSL 85 (165)
Q Consensus 52 DT~~fVk~Le~-~Gf-t~eQAEai~~al~~vl~~~l 85 (165)
+++.|++.++. .|+ ++.+|+.++.++-..+.+-+
T Consensus 15 ~~~~fl~~V~~~~~~~~~~~A~~~~raVL~tLrdRL 50 (145)
T 2ysk_A 15 KTHAWLKAIMEELGTEDRHKAYLALRAVLHALRDRL 50 (145)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56789999975 678 77799999999888876533
Done!