Query 031121
Match_columns 165
No_of_seqs 144 out of 289
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 15:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 61.4 18 0.0013 24.8 7.5 20 133-152 71-90 (144)
2 d1mula_ a.55.1.1 (A:) HU prote 61.2 6.6 0.00048 25.3 4.8 32 55-86 5-37 (90)
3 d1xzpa1 a.24.25.1 (A:118-211,A 58.6 15 0.0011 25.7 6.9 86 66-155 2-88 (173)
4 d1b8za_ a.55.1.1 (A:) HU prote 56.9 6.9 0.0005 25.1 4.3 32 55-86 5-37 (90)
5 d1r8ea1 a.6.1.3 (A:3-120) Tran 56.7 22 0.0016 23.1 8.1 21 50-70 47-67 (118)
6 d1oqya1 a.5.2.1 (A:160-200) DN 55.8 3.5 0.00026 23.5 2.3 21 55-75 6-26 (41)
7 d3bi1a1 a.48.2.1 (A:594-750) G 55.7 28 0.002 23.9 8.8 76 50-135 1-76 (157)
8 d1r8da_ a.6.1.3 (A:) Multidrug 55.6 18 0.0013 23.4 6.4 24 50-73 45-68 (109)
9 d1p71a_ a.55.1.1 (A:) HU prote 55.2 7.6 0.00055 25.1 4.3 31 56-86 6-37 (94)
10 d2o97b1 a.55.1.1 (B:1-90) HU p 53.9 10 0.00074 24.3 4.7 32 55-86 5-37 (90)
11 d2hjja1 d.50.3.3 (A:10-75) Hyp 53.1 3.6 0.00026 26.1 2.1 16 65-80 3-18 (66)
12 d3ci0k2 a.60.16.1 (K:94-203) P 49.9 9.6 0.0007 25.4 4.2 29 55-83 22-50 (110)
13 d1huua_ a.55.1.1 (A:) HU prote 49.4 11 0.0008 24.1 4.3 31 56-86 6-37 (90)
14 d1q08a_ a.6.1.3 (A:) Transcrip 47.8 30 0.0022 22.1 9.1 25 52-76 4-28 (94)
15 d1vg5a_ a.5.2.1 (A:) Rhomboid 44.3 31 0.0023 21.4 5.9 24 53-76 29-52 (73)
16 d1owfb_ a.55.1.1 (B:) Integrat 44.1 18 0.0013 23.3 4.7 32 55-86 5-38 (94)
17 d1owfa_ a.55.1.1 (A:) Integrat 39.9 18 0.0013 23.2 4.3 31 56-86 7-38 (96)
18 d1q5za_ a.196.1.1 (A:) Invasio 38.6 22 0.0016 25.1 4.7 62 71-146 31-98 (145)
19 d1exea_ a.55.1.1 (A:) Transcri 37.7 11 0.00083 24.6 2.9 31 56-86 6-37 (99)
20 d1x75a1 e.11.1.1 (A:363-494) D 37.0 17 0.0013 25.1 4.0 13 63-75 86-98 (132)
21 d1q06a_ a.6.1.3 (A:) Transcrip 35.1 53 0.0038 21.4 6.3 27 50-76 43-69 (127)
22 d1nxua_ c.122.1.1 (A:) 2,3-dik 34.6 16 0.0012 29.0 3.8 24 57-80 13-36 (332)
23 d1sfxa_ a.4.5.50 (A:) Hypothet 33.4 22 0.0016 22.9 3.9 24 55-78 8-31 (109)
24 d2gsca1 a.29.16.1 (A:9-125) Un 32.9 59 0.0043 21.1 9.0 93 53-145 12-114 (117)
25 d2g7la2 a.121.1.1 (A:87-230) P 32.7 25 0.0018 23.2 4.2 30 54-83 43-72 (144)
26 d1wiva_ a.5.2.1 (A:) Ubiquitin 31.0 27 0.002 21.7 3.8 25 50-75 27-51 (73)
27 d1whca_ a.5.2.1 (A:) UBA/UBX 3 30.5 14 0.001 22.5 2.3 21 55-75 11-31 (64)
28 d1wjia_ a.5.2.1 (A:) Tudor dom 30.0 24 0.0018 21.2 3.3 22 54-75 10-31 (63)
29 d1k62b_ a.127.1.1 (B:) Arginin 29.9 1.3E+02 0.0092 24.0 9.8 30 54-83 38-68 (459)
30 d1rfma_ c.122.1.1 (A:) L-sulfo 29.8 21 0.0015 28.3 3.8 24 57-80 13-36 (344)
31 d1xrha_ c.122.1.1 (A:) Ureidog 29.0 18 0.0013 28.8 3.2 32 49-80 4-37 (343)
32 d1seta1 a.2.7.1 (A:1-110) Sery 28.8 68 0.0049 20.5 10.8 80 52-147 10-89 (110)
33 d2vkva2 a.121.1.1 (A:68-205) T 27.5 35 0.0025 22.3 4.2 31 53-83 46-76 (138)
34 d1wgna_ a.5.2.1 (A:) Ubiquitin 27.0 21 0.0015 21.8 2.6 22 54-75 20-41 (63)
35 d1bvsa1 a.5.1.1 (A:148-203) DN 27.0 18 0.0013 22.0 2.2 22 56-77 7-28 (56)
36 d2crna1 a.5.2.1 (A:8-58) Suppr 26.3 27 0.002 20.3 2.9 21 56-76 5-25 (51)
37 d2g7ga2 a.121.1.1 (A:74-205) P 26.0 31 0.0022 22.3 3.6 31 54-84 43-73 (132)
38 d2g3qa1 a.5.2.1 (A:1339-1381) 25.5 18 0.0013 20.9 1.9 17 55-71 6-22 (43)
39 d1nkpa_ a.38.1.1 (A:) Myc prot 22.3 83 0.0061 19.3 5.9 8 109-116 54-61 (88)
40 d1m6ya1 a.60.13.1 (A:115-215) 22.3 23 0.0017 23.3 2.2 58 22-79 2-59 (101)
41 d1z0xa2 a.121.1.1 (A:72-220) T 21.0 67 0.0049 21.4 4.7 30 55-84 44-73 (149)
42 d1ivsa1 a.2.7.3 (A:797-862) Va 20.5 58 0.0042 19.2 3.8 20 126-145 8-27 (66)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=61.41 E-value=18 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031121 133 KLRSDIEKMRSELRYEIDKV 152 (165)
Q Consensus 133 kL~~ElekLkq~LreEI~kl 152 (165)
+|..+++.|+++|..++..+
T Consensus 71 ~l~~~~e~lr~~l~~~lee~ 90 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDV 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 2
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=61.22 E-value=6.6 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.1
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+++.| +..|+|..+++.+++++-+++.+.+.
T Consensus 5 eli~~ia~~~~ltk~~~~~~v~~~~~~i~~~L~ 37 (90)
T d1mula_ 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLK 37 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 356666 46799999999999999998887664
No 3
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=58.55 E-value=15 Score=25.66 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHH
Q 031121 66 PSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFS-MLQRETEKLRSDIEKMRSE 144 (165)
Q Consensus 66 t~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa-~Lr~e~ekL~~ElekLkq~ 144 (165)
+--|||+|+..+..--......+...|- -.+.+.....+.++-.++.++...- +|. ........+...++++.++
T Consensus 2 dL~qaEai~~lI~a~s~~~~~~A~~~l~--G~ls~~i~~ir~~L~~l~a~iEa~i--Df~ee~~~~~~~~~~~l~~i~~~ 77 (173)
T d1xzpa1 2 DLTSAEAVRDLIEAKSETSLKLSLRNLK--GGLRDFVDSLRRELIEVLAEIRVEL--DYPDEIETNTGEVVTRLERIKEK 77 (173)
T ss_dssp CHHHHHHHHHHHHCCSHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHHH--HSTTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHHHHHHhc--CCcccccccHHHHHHHHHHHHHH
Confidence 4469999988764422222222222221 1122222334444545554443221 110 0001122355556666666
Q ss_pred HHHHHHhhccc
Q 031121 145 LRYEIDKVTAG 155 (165)
Q Consensus 145 LreEI~kl~a~ 155 (165)
|..-+...+.+
T Consensus 78 l~~li~~~~~g 88 (173)
T d1xzpa1 78 LTEELKKADAG 88 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655554433
No 4
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=56.92 E-value=6.9 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.8
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+++.| +..|+|..+|+.+.+++-+++.+.+.
T Consensus 5 eli~~ia~~~~~s~~~~~~~~~~~~~~i~~~L~ 37 (90)
T d1b8za_ 5 ELIDRVAKKAGAKKKDVKLILDTILETITEALA 37 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355666 36699999999999999999887665
No 5
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=56.69 E-value=22 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.2
Q ss_pred eccHHHHHHHHhhCCCChHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQA 70 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQA 70 (165)
....+.+++.|.+.|||-++.
T Consensus 47 ~l~~l~~I~~lr~~g~sl~eI 67 (118)
T d1r8ea1 47 QLIHLDLIKSLKYIGTPLEEM 67 (118)
T ss_dssp GGGHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHH
Confidence 577889999999999998764
No 6
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.80 E-value=3.5 Score=23.51 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~ 75 (165)
..|+.|.+-||++++|+.-..
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~ 26 (41)
T d1oqya1 6 TMLTEIMSMGYERERVVAALR 26 (41)
T ss_dssp HHHHHHHTTTCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 568999999999999965443
No 7
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.69 E-value=28 Score=23.92 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=37.9
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQR 129 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~ 129 (165)
|||+..|+..|+.. ...+.......-..+...-++=+.|....-.++..-.++...+...+......+|.
T Consensus 1 Pfd~~~Ya~~L~~~----------~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~f~~aa~~~~~~~~~~~~~~~~~~r~ 70 (157)
T d3bi1a1 1 PFDCRDYAVVLRKY----------ADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDKSNPIVLRM 70 (157)
T ss_dssp SCCHHHHHHHHHHH----------HHHHHHHHTTCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHH----------HHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 58888888777542 22222111111111122233444555555666666666666666666666666665
Q ss_pred HHHHHH
Q 031121 130 ETEKLR 135 (165)
Q Consensus 130 e~ekL~ 135 (165)
-|++|+
T Consensus 71 ~N~~L~ 76 (157)
T d3bi1a1 71 MNDQLM 76 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 8
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=55.58 E-value=18 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.2
Q ss_pred eccHHHHHHHHhhCCCChHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAI 73 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai 73 (165)
.++.+.+++.|...|||-++...+
T Consensus 45 ~~~~l~~I~~lr~~G~sl~eI~~~ 68 (109)
T d1r8da_ 45 DLERLQQILFFKEIGFRLDEIKEM 68 (109)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 577889999999999999886544
No 9
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=55.23 E-value=7.6 Score=25.13 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=25.1
Q ss_pred HHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+++.| +..|+|..||+.+++++.+++.+.+.
T Consensus 6 li~~ia~~~~ls~~~~~~~v~~~~~~i~~~L~ 37 (94)
T d1p71a_ 6 LVDAVAEKASVTKKQADAVLTAALETIIEAVS 37 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 55555 46699999999999999998887664
No 10
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=53.90 E-value=10 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=25.0
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+++.| +..|+|..+++.+++++-+++.+.+.
T Consensus 5 eLi~~ia~~~~l~~~~~~~~v~~~~~~i~~~L~ 37 (90)
T d2o97b1 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLK 37 (90)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355666 46789999999999999999888764
No 11
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=53.14 E-value=3.6 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHHHHH
Q 031121 65 VPSKQAEAITAAITEV 80 (165)
Q Consensus 65 ft~eQAEai~~al~~v 80 (165)
||.+||++++.+.+.+
T Consensus 3 ftr~qA~aV~~~y~NV 18 (66)
T d2hjja1 3 FTRRQAQAVTTTYSNI 18 (66)
T ss_dssp CCHHHHHHHHHHCTTE
T ss_pred ccHHHHHHHHHHhcce
Confidence 9999999998875544
No 12
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=49.91 E-value=9.6 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.443 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~ 83 (165)
.|.+.|+.-|++..+|+.|+..|.+-+..
T Consensus 22 ~f~~Ll~~lgi~~~~a~~la~~l~DWiD~ 50 (110)
T d3ci0k2 22 QLIALISRLDVPAYRAELIAESLWEFIDE 50 (110)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCc
Confidence 57888899999999999999999988765
No 13
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=49.38 E-value=11 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=25.0
Q ss_pred HHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+++.| +..|+|..+++.+++++-+++.+.+.
T Consensus 6 li~~ia~~~~~~~~~~~~~~~~~~~~i~~~L~ 37 (90)
T d1huua_ 6 LINAVAETSGLSKKDATKAVDAVFDSITEALR 37 (90)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45555 35699999999999999998887664
No 14
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=47.80 E-value=30 Score=22.05 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=20.3
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
+.++|+++.+.-|||-++-..+...
T Consensus 4 ~RL~fI~~ar~lGFsL~EI~~ll~l 28 (94)
T d1q08a_ 4 QRLKFIRHARQLGFSLESIRELLSI 28 (94)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5689999999999999886555543
No 15
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.29 E-value=31 Score=21.38 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHH
Q 031121 53 TLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 53 T~~fVk~Le~~Gft~eQAEai~~a 76 (165)
.-.-+++|..-||++++|+.-..+
T Consensus 29 ~ee~i~~L~~MGF~~~~a~~AL~~ 52 (73)
T d1vg5a_ 29 SEEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHH
Confidence 356799999999999998765443
No 16
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=44.14 E-value=18 Score=23.34 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=26.2
Q ss_pred HHHHHHh-h-CCCChHHHHHHHHHHHHHHHhhHH
Q 031121 55 QLVRGLE-A-QGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 55 ~fVk~Le-~-~Gft~eQAEai~~al~~vl~~~le 86 (165)
.+++.|- + .|+|..+++.+++++-+++.+++.
T Consensus 5 eli~~ia~~~~~ls~~~~~~~v~~~~~~i~~~L~ 38 (94)
T d1owfb_ 5 ELIERLATQQSHIPAKTVEDAVKEMLEHMASTLA 38 (94)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4778874 4 589999999999999998877654
No 17
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=39.88 E-value=18 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.8
Q ss_pred HHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+++.| +..|+|..+++.+++++-+++.+.+.
T Consensus 7 li~~ia~~~~lsk~~~~~~~~~~~~~i~~~L~ 38 (96)
T d1owfa_ 7 MSEYLFDKLGLSKRDAKELVELFFEEIRRALE 38 (96)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55555 35699999999999999998877664
No 18
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=38.58 E-value=22 Score=25.13 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHH
Q 031121 71 EAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET------EKLRSDIEKMRSE 144 (165)
Q Consensus 71 Eai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~------ekL~~ElekLkq~ 144 (165)
|++..+++.+++- +-. .-+-++..|..||.||...++-+.+.|+..- .+|+.+++.|++-
T Consensus 31 e~fLgvvRkALEP-------das-------tPf~vRRaFd~LRaeILpnD~~ks~alkaqcs~i~~~~eLk~k~~tLke~ 96 (145)
T d1q5za_ 31 ETFLGVIRKALEP-------DTS-------TPFPVRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEV 96 (145)
T ss_dssp HHHHHHHHHHTCB-------CTT-------SCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCc-------ccC-------CchHHHHHHHHHHHhcCCcchhhHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 5677777777643 111 2256788999999999888888778777665 4688888888876
Q ss_pred HH
Q 031121 145 LR 146 (165)
Q Consensus 145 Lr 146 (165)
+.
T Consensus 97 it 98 (145)
T d1q5za_ 97 IT 98 (145)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 19
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=37.67 E-value=11 Score=24.57 Aligned_cols=31 Identities=10% Similarity=0.440 Sum_probs=24.9
Q ss_pred HHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121 56 LVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (165)
Q Consensus 56 fVk~L-e~~Gft~eQAEai~~al~~vl~~~le 86 (165)
+++.| +..|+|..+++.++.++-+++.+.+.
T Consensus 6 li~~ia~~~~ls~~~~~~~~~~~~~~i~~~L~ 37 (99)
T d1exea_ 6 LIKAIAQDTGLTQVSVSKMLASFEKIITETVA 37 (99)
T ss_dssp HHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45555 46699999999999999998887664
No 20
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=37.02 E-value=17 Score=25.15 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=11.0
Q ss_pred CCCChHHHHHHHH
Q 031121 63 QGVPSKQAEAITA 75 (165)
Q Consensus 63 ~Gft~eQAEai~~ 75 (165)
-|||+.||+||.+
T Consensus 86 ~~LSe~QA~AIL~ 98 (132)
T d1x75a1 86 YYLTEQQAQAILD 98 (132)
T ss_dssp EECCHHHHHHHHT
T ss_pred ccCCHHHHHHHHH
Confidence 3699999999965
No 21
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=35.12 E-value=53 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~a 76 (165)
..+.+.+++.|...|||-+.-..+...
T Consensus 43 ~i~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (127)
T d1q06a_ 43 HLNELTLLRQARQVGFNLEESGELVNL 69 (127)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999999999887665543
No 22
>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK) {Escherichia coli [TaxId: 562]}
Probab=34.58 E-value=16 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 57 VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 57 Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+.|++.|++.++|+.+++.+.+.
T Consensus 13 ~~~l~~~G~~~~~A~~~A~~Lv~A 36 (332)
T d1nxua_ 13 NRVLISRGVDSETADACAEMFART 36 (332)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445899999999999999998775
No 23
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=33.42 E-value=22 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAIT 78 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~ 78 (165)
.+++.|+.-|||+.|+.++...+.
T Consensus 8 ~l~~~L~~lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 8 ELVKALEKLSFKPSDVRIYSLLLE 31 (109)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh
Confidence 688999999999999998877654
No 24
>d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=32.90 E-value=59 Score=21.06 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=48.4
Q ss_pred HHHHHHHHh--hCCCChHHHHHHHHHHHHHHHhhHHHHhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhh------h
Q 031121 53 TLQLVRGLE--AQGVPSKQAEAITAAITEVLNDSLENVAHTFV--SKGEMQKTEMIQEANLSKFKSEVQSSQE------H 122 (165)
Q Consensus 53 T~~fVk~Le--~~Gft~eQAEai~~al~~vl~~~le~~~~~lv--TK~dle~~~~~qkad~a~LR~Em~~~ek------s 122 (165)
++.|+..+- ..+||....-+++.-|+....+-..++++..- |+.|.-+--+--...+.+++.-+....+ .
T Consensus 12 a~~l~~~i~~l~~~fP~~e~~~L~~Ql~ra~~SI~~NIaEg~~r~s~~d~~~fl~iA~gs~~E~~~~l~la~~~~~i~~~ 91 (117)
T d2gsca1 12 SMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSE 91 (117)
T ss_dssp HHHHHHHHHHHGGGSCGGGTTTHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHhhHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 444544442 34677776666777666665554555555543 3333322223335667788877766444 4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 031121 123 HFSMLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 123 efa~Lr~e~ekL~~ElekLkq~L 145 (165)
++..+..+.+.+..-+-.+.+.+
T Consensus 92 ~~~~l~~~~~ei~k~L~~~ik~l 114 (117)
T d2gsca1 92 DDQSVRRQVDLVFAKLTALMNAL 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444444443
No 25
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.66 E-value=25 Score=23.21 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~ 83 (165)
-.++..|..+||+.++|-.+..++...+-.
T Consensus 43 e~~l~~L~~aG~~~~~a~~~~~~l~~~v~g 72 (144)
T d2g7la2 43 ERVLELLARSGAPGAQVAWGVDKLLQDATA 72 (144)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 367889999999999998888887775543
No 26
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.03 E-value=27 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=18.9
Q ss_pred eccHHHHHHHHhhCCCChHHHHHHHH
Q 031121 50 LVDTLQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 50 ~FDT~~fVk~Le~~Gft~eQAEai~~ 75 (165)
..| -..|+.|..-||++++|..-..
T Consensus 27 ~~d-~~~i~~L~~MGF~~~~a~~AL~ 51 (73)
T d1wiva_ 27 DID-QSSVDTLLSFGFAEDVARKALK 51 (73)
T ss_dssp SSC-HHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCC-HHHHHHHHhcCCCHHHHHHHHH
Confidence 344 3679999999999999865443
No 27
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.49 E-value=14 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 031121 55 QLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~ 75 (165)
..+++|.+-||++++|+--..
T Consensus 11 ~~l~~L~~MGF~~~~a~~AL~ 31 (64)
T d1whca_ 11 TALESLIEMGFPRGRAEKALA 31 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 578999999999999965433
No 28
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.03 E-value=24 Score=21.23 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCChHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~ 75 (165)
...|++|..-||++.+|+.-..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~ 31 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALM 31 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5679999999999999976544
No 29
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.86 E-value=1.3e+02 Score=23.95 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=26.4
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHHHHh
Q 031121 54 LQLVRGLEAQG-VPSKQAEAITAAITEVLND 83 (165)
Q Consensus 54 ~~fVk~Le~~G-ft~eQAEai~~al~~vl~~ 83 (165)
.+.++-|.+.| +|.+.|.+|.+++.++..+
T Consensus 38 ~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~ 68 (459)
T d1k62b_ 38 KAYSRGLEKAGLLTKAEMDQILHGLDKVAEE 68 (459)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 37789999999 8999999999999988665
No 30
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.83 E-value=21 Score=28.27 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHH
Q 031121 57 VRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 57 Vk~Le~~Gft~eQAEai~~al~~v 80 (165)
.+.|++.|+++++|+.+++.+.+.
T Consensus 13 ~~~l~~~G~~~~~A~~vA~~lv~a 36 (344)
T d1rfma_ 13 IDVLKKFGVPEEDAKITADVFVDA 36 (344)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345899999999999999998765
No 31
>d1xrha_ c.122.1.1 (A:) Ureidoglycolate dehydrogenase AllD {Escherichia coli [TaxId: 562]}
Probab=29.02 E-value=18 Score=28.78 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.5
Q ss_pred eeccHHH--HHHHHhhCCCChHHHHHHHHHHHHH
Q 031121 49 FLVDTLQ--LVRGLEAQGVPSKQAEAITAAITEV 80 (165)
Q Consensus 49 ~~FDT~~--fVk~Le~~Gft~eQAEai~~al~~v 80 (165)
+.+|+++ +.+.|++.|++.++|+.+++.+.+.
T Consensus 4 i~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 37 (343)
T d1xrha_ 4 ISRETLHQLIENKLCQAGLKREHAATVAEVLVYA 37 (343)
T ss_dssp ECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444442 4566899999999999999998775
No 32
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=28.81 E-value=68 Score=20.52 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 031121 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131 (165)
Q Consensus 52 DT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ 131 (165)
|.-.|.+.|...|++.. -..|.. + +.-...+.++.+ ..++.-..+-++|....+.+...+..+.
T Consensus 10 n~e~v~~~l~~R~~~~~-ld~i~~----l-----d~~rr~l~~~~e------~l~~~rN~~sk~i~k~~~~~~~~l~~~~ 73 (110)
T d1seta1 10 EPEVFHRAIREKGVALD-LEALLA----L-----DREVQELKKRLQ------EVQTERNQVAKRVPKAPPEEKEALIARG 73 (110)
T ss_dssp CHHHHHHHHHHTTCCCC-HHHHHH----H-----HHHHHHHHHHHH------HHHHHHHHHHHHGGGCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccC-HHHHHH----H-----HHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 45677888888887763 122222 1 111222322222 2233333334445444455566666677
Q ss_pred HHHHHHHHHHHHHHHH
Q 031121 132 EKLRSDIEKMRSELRY 147 (165)
Q Consensus 132 ekL~~ElekLkq~Lre 147 (165)
..|..++..+.+++.+
T Consensus 74 k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 74 KALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666544
No 33
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=27.48 E-value=35 Score=22.33 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 031121 53 TLQLVRGLEAQGVPSKQAEAITAAITEVLND 83 (165)
Q Consensus 53 T~~fVk~Le~~Gft~eQAEai~~al~~vl~~ 83 (165)
.-.++..|..+||+++++-.+..++...+-.
T Consensus 46 ~e~~l~~L~~aGl~~~~a~~~~~~l~~~v~G 76 (138)
T d2vkva2 46 VETQLRFMTENGFSLRDGLYAISAVSHFTLG 76 (138)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999888887776543
No 34
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.98 E-value=21 Score=21.76 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHH
Q 031121 54 LQLVRGLEAQGVPSKQAEAITA 75 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~ 75 (165)
-..|..|..-||++++|+.-..
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~ 41 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMK 41 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4689999999999999865544
No 35
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=26.96 E-value=18 Score=21.95 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHHhhCCCChHHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAAI 77 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~al 77 (165)
+|..|-.-||+..|||..+..+
T Consensus 7 VvEALvGLGF~~KqAe~a~d~V 28 (56)
T d1bvsa1 7 VVEALVGLGFAAKQAEEATDQV 28 (56)
T ss_dssp TTHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHhHH
Confidence 5667788899999999776654
No 36
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.31 E-value=27 Score=20.27 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHhhCCCChHHHHHHHHH
Q 031121 56 LVRGLEAQGVPSKQAEAITAA 76 (165)
Q Consensus 56 fVk~Le~~Gft~eQAEai~~a 76 (165)
.|..|.+-||++.+|+--...
T Consensus 5 ~v~~L~~MGF~~~~a~~Al~~ 25 (51)
T d2crna1 5 LLEPLLAMGFPVHTALKALAA 25 (51)
T ss_dssp SHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 478899999999999765443
No 37
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=25.98 E-value=31 Score=22.34 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.6
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHhh
Q 031121 54 LQLVRGLEAQGVPSKQAEAITAAITEVLNDS 84 (165)
Q Consensus 54 ~~fVk~Le~~Gft~eQAEai~~al~~vl~~~ 84 (165)
-.+...|..+||++++|-.+..++...+-..
T Consensus 43 e~~l~~L~~aG~~~~~a~~~~~~l~~~v~G~ 73 (132)
T d2g7ga2 43 HSAAAGLRGAGFPDDHIMAVITAAENFLLGA 73 (132)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999998888877765443
No 38
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=25.50 E-value=18 Score=20.89 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHHHHhhCCCChHHHH
Q 031121 55 QLVRGLEAQGVPSKQAE 71 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAE 71 (165)
.-|+.|-.-||++++|.
T Consensus 6 ~ai~eL~~MGF~e~~A~ 22 (43)
T d2g3qa1 6 LAVEELSGMGFTEEEAH 22 (43)
T ss_dssp HHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHH
Confidence 35788999999999984
No 39
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.32 E-value=83 Score=19.33 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 031121 109 LSKFKSEV 116 (165)
Q Consensus 109 ~a~LR~Em 116 (165)
|-.|+.++
T Consensus 54 I~~L~~~~ 61 (88)
T d1nkpa_ 54 ILSVQAEE 61 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 40
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.27 E-value=23 Score=23.33 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=39.0
Q ss_pred ccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 031121 22 QGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITE 79 (165)
Q Consensus 22 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~ 79 (165)
.||+|....|..-|+=.+...+.....-.+|-..+.+-|..-|=-..-|..|+.++.+
T Consensus 2 RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~Il~~yGee~~~a~~ia~~Iv~ 59 (101)
T d1m6ya1 2 RGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVE 59 (101)
T ss_dssp SCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHHHHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCCCcCHHHHHhhhhHHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 3788887777766654444444444555688889999999999443347777776543
No 41
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=20.97 E-value=67 Score=21.35 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhh
Q 031121 55 QLVRGLEAQGVPSKQAEAITAAITEVLNDS 84 (165)
Q Consensus 55 ~fVk~Le~~Gft~eQAEai~~al~~vl~~~ 84 (165)
.+...|..+||+++++-.++.++...+...
T Consensus 44 ~~l~~L~~aGl~~~~a~~a~~~l~~~v~G~ 73 (149)
T d1z0xa2 44 QMMGILREAGFSPEMTHLAVTSLQHLLFGM 73 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999988888766553
No 42
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.47 E-value=58 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 031121 126 MLQRETEKLRSDIEKMRSEL 145 (165)
Q Consensus 126 ~Lr~e~ekL~~ElekLkq~L 145 (165)
.|..+.+++..+++++..+|
T Consensus 8 RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 8 RQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
Done!