Query 031125
Match_columns 165
No_of_seqs 197 out of 1640
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 100.0 1.9E-35 4E-40 231.6 18.4 148 10-160 12-159 (159)
2 PRK08344 V-type ATP synthase s 100.0 2.2E-33 4.8E-38 219.5 17.9 145 14-158 2-155 (157)
3 PRK09621 V-type ATP synthase s 100.0 3E-33 6.5E-38 215.3 17.4 137 14-155 4-140 (141)
4 PRK14893 V-type ATP synthase s 100.0 3.7E-32 8E-37 213.3 18.9 150 11-160 7-158 (161)
5 PRK06649 V-type ATP synthase s 100.0 3.3E-30 7.1E-35 198.1 16.6 135 14-156 3-142 (143)
6 PRK06271 V-type ATP synthase s 100.0 1.9E-29 4.2E-34 205.8 17.9 141 12-158 70-210 (213)
7 PRK06271 V-type ATP synthase s 100.0 1.6E-29 3.4E-34 206.4 17.0 138 16-161 2-139 (213)
8 KOG0233 Vacuolar H+-ATPase V0 99.9 2.8E-26 6.1E-31 180.3 3.8 151 11-161 39-194 (196)
9 KOG0232 Vacuolar H+-ATPase V0 99.9 6.6E-25 1.4E-29 169.6 9.7 154 7-160 2-155 (156)
10 TIGR01100 V_ATP_synt_C vacuola 99.9 1.5E-23 3.3E-28 154.8 9.0 107 13-120 1-107 (108)
11 COG0636 AtpE F0F1-type ATP syn 99.7 5.2E-17 1.1E-21 114.0 9.9 70 91-160 6-79 (79)
12 TIGR03322 alt_F1F0_F0_C altern 99.7 7.1E-17 1.5E-21 114.9 9.4 76 86-161 2-81 (86)
13 PF00137 ATP-synt_C: ATP synth 99.7 1.2E-16 2.6E-21 108.3 10.1 66 93-158 1-66 (66)
14 PRK13468 F0F1 ATP synthase sub 99.7 1.5E-16 3.3E-21 112.3 10.2 75 87-161 2-80 (82)
15 PRK06876 F0F1 ATP synthase sub 99.7 1.6E-16 3.6E-21 111.2 10.2 72 89-160 3-78 (78)
16 CHL00061 atpH ATP synthase CF0 99.7 2.1E-16 4.5E-21 111.4 10.3 73 89-161 4-80 (81)
17 PRK07354 F0F1 ATP synthase sub 99.7 4E-16 8.8E-21 110.0 10.4 73 89-161 4-80 (81)
18 PRK08482 F0F1 ATP synthase sub 99.7 7.1E-16 1.5E-20 113.4 10.3 75 88-162 26-104 (105)
19 PRK06251 V-type ATP synthase s 99.7 6.8E-16 1.5E-20 112.9 10.0 72 88-159 30-101 (102)
20 PRK13471 F0F1 ATP synthase sub 99.7 1.3E-15 2.8E-20 108.2 10.1 71 88-158 10-84 (85)
21 PRK13469 F0F1 ATP synthase sub 99.6 2.2E-15 4.7E-20 105.8 10.0 69 89-158 6-78 (79)
22 PRK13464 F0F1 ATP synthase sub 99.6 1.4E-15 3E-20 110.9 9.1 75 89-163 10-88 (101)
23 PRK07558 F0F1 ATP synthase sub 99.6 2.8E-15 6.2E-20 104.0 9.4 67 91-158 4-74 (74)
24 PRK05880 F0F1 ATP synthase sub 99.6 5.1E-15 1.1E-19 104.3 10.4 73 89-161 4-80 (81)
25 MTH00222 ATP9 ATP synthase F0 99.6 4E-15 8.7E-20 103.9 9.6 69 89-158 4-76 (77)
26 PF00137 ATP-synt_C: ATP synth 99.6 6.6E-15 1.4E-19 99.7 8.1 66 14-79 1-66 (66)
27 PRK07159 F0F1 ATP synthase sub 99.5 4.2E-14 9E-19 103.1 9.2 67 91-158 29-99 (100)
28 PRK13466 F0F1 ATP synthase sub 99.5 4.3E-14 9.4E-19 96.0 8.3 57 99-155 5-65 (66)
29 PRK13467 F0F1 ATP synthase sub 99.5 4.8E-14 1E-18 95.7 8.1 56 100-155 6-65 (66)
30 PRK14893 V-type ATP synthase s 99.5 1.3E-13 2.9E-18 108.5 10.4 75 88-162 5-79 (161)
31 COG0636 AtpE F0F1-type ATP syn 99.5 1.3E-13 2.7E-18 96.9 8.1 68 13-80 7-78 (79)
32 PRK13471 F0F1 ATP synthase sub 99.5 5.5E-14 1.2E-18 99.9 6.2 68 12-79 13-84 (85)
33 TIGR01260 ATP_synt_c ATP synth 99.5 1.4E-13 3.1E-18 91.3 6.8 53 106-158 2-58 (58)
34 PRK06558 V-type ATP synthase s 99.5 3.6E-13 7.8E-18 105.8 9.7 72 90-161 13-84 (159)
35 PRK07874 F0F1 ATP synthase sub 99.5 2.6E-13 5.7E-18 95.3 7.9 63 88-154 13-79 (80)
36 PRK06251 V-type ATP synthase s 99.4 3.7E-13 8.1E-18 98.5 8.1 66 14-79 35-100 (102)
37 CHL00061 atpH ATP synthase CF0 99.4 4.3E-13 9.4E-18 94.5 8.0 66 14-79 8-77 (81)
38 PRK13469 F0F1 ATP synthase sub 99.4 6E-13 1.3E-17 93.4 7.6 68 11-79 7-78 (79)
39 PRK06876 F0F1 ATP synthase sub 99.4 9.9E-13 2.2E-17 92.1 8.3 67 13-79 6-76 (78)
40 PRK08344 V-type ATP synthase s 99.4 2.2E-12 4.7E-17 101.2 9.3 66 93-158 2-67 (157)
41 PRK07354 F0F1 ATP synthase sub 99.4 2.2E-12 4.8E-17 91.0 8.0 66 14-79 8-77 (81)
42 PRK13468 F0F1 ATP synthase sub 99.3 6.2E-12 1.3E-16 88.9 8.0 67 13-79 7-77 (82)
43 PRK07558 F0F1 ATP synthase sub 99.3 7.9E-12 1.7E-16 86.8 7.9 65 13-78 5-73 (74)
44 TIGR03322 alt_F1F0_F0_C altern 99.3 1E-11 2.2E-16 88.4 8.0 67 13-79 8-78 (86)
45 PRK08482 F0F1 ATP synthase sub 99.3 1.1E-11 2.4E-16 91.2 7.9 67 13-79 30-100 (105)
46 PRK07159 F0F1 ATP synthase sub 99.3 1.8E-11 3.9E-16 89.3 7.8 65 14-79 31-99 (100)
47 PRK09621 V-type ATP synthase s 99.3 2.9E-11 6.4E-16 93.3 9.1 70 93-162 4-73 (141)
48 MTH00222 ATP9 ATP synthase F0 99.3 2.6E-11 5.6E-16 84.7 7.8 66 13-79 7-76 (77)
49 PRK13464 F0F1 ATP synthase sub 99.2 5.1E-11 1.1E-15 87.0 7.8 66 14-79 14-83 (101)
50 TIGR01100 V_ATP_synt_C vacuola 99.2 8.3E-11 1.8E-15 87.0 8.5 70 93-162 2-71 (108)
51 PRK13466 F0F1 ATP synthase sub 99.1 1.2E-10 2.7E-15 79.1 6.5 57 20-76 5-65 (66)
52 PRK13467 F0F1 ATP synthase sub 99.1 1.5E-10 3.2E-15 78.7 6.8 55 22-76 7-65 (66)
53 PRK05880 F0F1 ATP synthase sub 99.1 2.8E-10 6.1E-15 80.2 8.2 66 14-79 8-77 (81)
54 TIGR01260 ATP_synt_c ATP synth 99.1 1.7E-10 3.8E-15 76.5 6.0 53 26-78 1-57 (58)
55 PRK07874 F0F1 ATP synthase sub 99.1 1.4E-10 3.1E-15 81.5 5.8 56 20-75 20-79 (80)
56 PRK06649 V-type ATP synthase s 99.0 2E-09 4.4E-14 83.2 7.8 65 13-77 78-142 (143)
57 KOG0232 Vacuolar H+-ATPase V0 98.6 4.9E-08 1.1E-12 76.0 4.5 77 4-80 73-154 (156)
58 KOG3025 Mitochondrial F1F0-ATP 98.6 1.7E-07 3.7E-12 70.1 6.1 70 88-158 63-136 (137)
59 KOG0233 Vacuolar H+-ATPase V0 98.3 5.1E-08 1.1E-12 77.4 -2.9 72 89-160 38-109 (196)
60 KOG3025 Mitochondrial F1F0-ATP 97.4 0.00029 6.2E-09 52.9 5.1 66 13-79 67-136 (137)
61 PF04284 DUF441: Protein of un 31.6 1.1E+02 0.0023 23.8 4.6 39 102-140 79-117 (140)
62 PF11947 DUF3464: Protein of u 28.3 2.4E+02 0.0052 22.1 6.1 28 52-79 62-89 (153)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=1.9e-35 Score=231.65 Aligned_cols=148 Identities=29% Similarity=0.492 Sum_probs=141.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccch
Q 031125 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~ 89 (165)
.+++++++|++++++++++|+++|+++++.+++++.+||||.++|.+++.++||+++||||++++++.+++++ ++++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~---~~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP---ELSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cccH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999998754 2678
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
.+++.++++|+++|++++++|++||+++++++++++||||.|.|+++..+|+|+++||++++++++.++.+
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~~ 159 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGVK 159 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988753
No 2
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=2.2e-33 Score=219.50 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--------PKAK 85 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~--------~~~~ 85 (165)
+.++|++++++++++|++||+++++.+++++.+||||.++|++++.++||+++|||+|++|++....+ ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999877643221 1224
Q ss_pred ccchHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP-KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P-~l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
++++.+++.++++|+++|++++++|++||+++++++++++||| |+|+++++..+|+|+++||+++++++++.-
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999 999999999999999999999999998754
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=3e-33 Score=215.28 Aligned_cols=137 Identities=21% Similarity=0.356 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchHhHH
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~ 93 (165)
++++|++++++++++||+||++++|.+++++..|+||.++|.++..++||+|+|||+|+++++..++++. ..+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887542 45789
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 94 ~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll 155 (165)
..+++|+.+|+++++|+++||+++++++++++||||.|+|+++..+++|+++||++++++++
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999886
No 4
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=3.7e-32 Score=213.35 Aligned_cols=150 Identities=24% Similarity=0.454 Sum_probs=139.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Cccccc
Q 031125 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYY 88 (165)
Q Consensus 11 ~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~--~~~~~~ 88 (165)
.+.+.++|++++++++++|+++|+++++.+++++++||||.+++++++.+++|+++||++++++++.++.+. ..++++
T Consensus 7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~~ 86 (161)
T PRK14893 7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLS 86 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccch
Confidence 345889999999999999999999999999999999999999999999999999999999999999885422 124578
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
+.+++.++++++++|+++++++++||+++++++++++||||.|.++++..+++|+++||+|++++++++..+
T Consensus 87 ~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~~~ 158 (161)
T PRK14893 87 VTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVFGG 158 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999887653
No 5
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=3.3e-30 Score=198.15 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccc-----cchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~-----~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~ 88 (165)
++++|++++++++++||++|++++|.++.+.+.| |||.+. .++.+.+|.||+|||||+++++.. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 6899999999999999999999999999999998 999998 899999999999999999999986 256
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 156 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~ 156 (165)
..+++.++++|+++|++++.|++.||++++++++.++||||.|+++++..+|+|+++||+|++++++.
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999998864
No 6
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=1.9e-29 Score=205.83 Aligned_cols=141 Identities=25% Similarity=0.446 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchHh
Q 031125 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (165)
Q Consensus 12 ~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~ 91 (165)
..+.++|++++++++++ |++++++++++++++.+||||.++|+++..+|+|+++|||+|+++++..+++++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 35889999999999999 789999999999999999999999999999999999999999999999876542 3567
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
++.++++|+++|++++ +|++||+++++++++++||||.+.|.++..+++|+++||++++++++++.
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~ 210 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLG 210 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999998875
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=1.6e-29 Score=206.36 Aligned_cols=138 Identities=29% Similarity=0.474 Sum_probs=130.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchHhHHHH
Q 031125 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (165)
Q Consensus 16 ~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~~~ 95 (165)
.+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++||++++++++.++.++ .++|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999987532 379999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 96 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 96 l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
+++|+++|++++ |+++||+++++++++++||||.|+|+++..+++|+++|||+++++++..+.+.
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~ 139 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA 139 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998 88999999999999999999999999999999999999999999999887643
No 8
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.92 E-value=2.8e-26 Score=180.34 Aligned_cols=151 Identities=36% Similarity=0.704 Sum_probs=141.8
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----c
Q 031125 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA-----K 85 (165)
Q Consensus 11 ~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~-----~ 85 (165)
.++|+-+|++++++++.+|++||+-..|++..++..|.||..+|.++.++|||+.+|||+|+++++..|+++.+ .
T Consensus 39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~ 118 (196)
T KOG0233|consen 39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG 118 (196)
T ss_pred hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence 34599999999999999999999999999999999999999999999999999999999999999999987642 2
Q ss_pred ccchHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
..++.+++..+++|+.+|++.+.+|++.|++|+.+.-+.|+||.+|.|.++.+.|..++++||+++++++..|..+
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~~ 194 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKASM 194 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhccccccc
Confidence 3478899999999999999999999999999999999999999999999999999999999999999999887654
No 9
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.92 E-value=6.6e-25 Score=169.57 Aligned_cols=154 Identities=70% Similarity=1.137 Sum_probs=147.8
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 031125 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (165)
Q Consensus 7 ~~~~~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~ 86 (165)
.|.++||+...|++.+..++++|+++|+.+.+...+.+..++||+..|+++|++++...+|||++++.++..+++++.+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred cchHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
++..+++..+++|+.+|++++.+++.+|+++...+...+|||++|..+++...|.|.+++|+|++++.+.++.+
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~~ 155 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVGG 155 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987754
No 10
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.90 E-value=1.5e-23 Score=154.75 Aligned_cols=107 Identities=70% Similarity=1.229 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchHhH
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~ 92 (165)
|++++|++++++++++|++||+++++.+.+++..++||+++|++++++|||+|+|||||+++++..+++++. ++++.++
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 478999999999999999999999997777778888999999999999999999999999999999987642 4789999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAG 120 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~ 120 (165)
+.++++||++|++++.||+.||++++..
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999998653
No 11
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.72 E-value=5.2e-17 Score=114.00 Aligned_cols=70 Identities=44% Similarity=0.721 Sum_probs=67.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
+++.++++|+++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++.++.+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~ 79 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP 79 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999 9999999999999999999999999998753
No 12
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.71 E-value=7.1e-17 Score=114.91 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=70.5
Q ss_pred ccchHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
..++..+++.+++|+.+|++++++|+|||+++++++|+++|||| ++++++++.+++|+++||+++++++++|.+++
T Consensus 2 ~~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~ 81 (86)
T TIGR03322 2 SLTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPF 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999998 58999999999999999999999999988653
No 13
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.71 E-value=1.2e-16 Score=108.35 Aligned_cols=66 Identities=42% Similarity=0.715 Sum_probs=64.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
|+++++++++|++++++++|+|+++++++++++||||+|+++++..+++|+++||+++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999875
No 14
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.70 E-value=1.5e-16 Score=112.34 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=69.7
Q ss_pred cchHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
.++.++.+++++|+++|++++++|+|||+++++++++++|||| ++++++++.+++|+++||+++++++++|.+++
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~ 80 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF 80 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567889999999999999999999999999999999999997 67799999999999999999999999998764
No 15
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.70 E-value=1.6e-16 Score=111.15 Aligned_cols=72 Identities=25% Similarity=0.437 Sum_probs=67.2
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
+..+.+.+++|+++|++++++|+|+|+++++++++++|||| ++++++++.+++|+++||+++++++++|.++
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~p 78 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFANP 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999999997 7889999999999999999999999998753
No 16
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.70 E-value=2.1e-16 Score=111.40 Aligned_cols=73 Identities=33% Similarity=0.530 Sum_probs=67.8
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
...+++.+++|+++|++++++|+|+|+++++++++++|||| ++++++++.+++|+++||+++++++++|.++.
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~ 80 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34667999999999999999999999999999999999997 77889999999999999999999999998763
No 17
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.68 E-value=4e-16 Score=109.98 Aligned_cols=73 Identities=29% Similarity=0.487 Sum_probs=67.8
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
...+++++++|+++|++++++|+|||+++++++++++|||| +++++++..+++|+++||+++++++++|..+.
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p~ 80 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45677999999999999999999999999999999999998 68888999999999999999999999998653
No 18
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.66 E-value=7.1e-16 Score=113.41 Aligned_cols=75 Identities=24% Similarity=0.459 Sum_probs=70.4
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~ 162 (165)
++..+.+++++|+++|++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|.+++.
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~~ 104 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPFL 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467888999999999999999999999999999999999997 788899999999999999999999999987753
No 19
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.66 E-value=6.8e-16 Score=112.93 Aligned_cols=72 Identities=24% Similarity=0.490 Sum_probs=68.3
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~ 159 (165)
....+.+++++|+++|++++++|+|||+++++++++++||||.+.++++..+++|+++||+++++++++|.+
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~ 101 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGK 101 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566788999999999999999999999999999999999999999999999999999999999999988764
No 20
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.65 E-value=1.3e-15 Score=108.16 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=66.2
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
++..+.+++++|+++|++++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778999999999999999999999999999999999997 67799999999999999999999999875
No 21
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.64 E-value=2.2e-15 Score=105.79 Aligned_cols=69 Identities=39% Similarity=0.644 Sum_probs=65.3
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
+..+++++++|+++ ++++++|+|+|+++++++++++|||| ++++++++.+|+|+++||++++++++++.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999 99999999999999999999999997 78888999999999999999999999875
No 22
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.64 E-value=1.4e-15 Score=110.86 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=69.9
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQSR 163 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~~ 163 (165)
...+...+++++.+|++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|+.++.+
T Consensus 10 ~l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~~ 88 (101)
T PRK13464 10 NLNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLAI 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34577899999999999999999999999999999999997 9999999999999999999999999999887654
No 23
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.63 E-value=2.8e-15 Score=103.96 Aligned_cols=67 Identities=19% Similarity=0.416 Sum_probs=63.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
.+.+.+++|+++ ++++++|+|+|+++++++++++|||| +|++++++.+++|+++||+++++++++|.
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999 99999999999999999999999998 99999999999999999999999998874
No 24
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.62 E-value=5.1e-15 Score=104.27 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
+..+.+++++|+++|++++++|+|+|+++++++|+++|||| ++++++++.+++|++.+|++++.+++.|.++.
T Consensus 4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p~ 80 (81)
T PRK05880 4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778999999999999999999999999999999999997 99999999999999999999999999888653
No 25
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.62 E-value=4e-15 Score=103.90 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=65.4
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
..++.+.+++|+.+ ++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55778999999999 99999999999999999999999996 99999999999999999999999999875
No 26
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.59 E-value=6.6e-15 Score=99.75 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+.++|++++++++++|+++|+++++.+.+++.+||||.++|++++.+++|+++||+++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999864
No 27
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.54 E-value=4.2e-14 Score=103.10 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=62.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
..++.+++|+++ ++++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 336899999999 99999999999999999999999997 68889999999999999999999999875
No 28
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.53 E-value=4.3e-14 Score=96.01 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 99 GLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 99 gl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll 155 (165)
++++|++++++++|+|.++++++|+++|||| ++++++++.+++|+++||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999996 99999999999999999999999875
No 29
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.53 E-value=4.8e-14 Score=95.75 Aligned_cols=56 Identities=30% Similarity=0.375 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 100 LACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 100 l~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll 155 (165)
+..|++++++|+|+|.++++++|+++|||| ++++++++.+++|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999999999999999997 89999999999999999999999876
No 30
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.51 E-value=1.3e-13 Score=108.46 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=70.1
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~ 162 (165)
+...+++++++++++|++++++++|+|+++++++++++||||.++++++..+++|+++||+++++++++++++..
T Consensus 5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~ 79 (161)
T PRK14893 5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLL 79 (161)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455789999999999999999999999999999999999999999999999999999999999999999976543
No 31
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.49 E-value=1.3e-13 Score=96.86 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccch----hhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
-+.+++++++++++++|+++|+++++.+..++.+|||| .++++++..+|+|++++|+|++++++.++.
T Consensus 7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999 999999999999999999999999998763
No 32
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.49 E-value=5.5e-14 Score=99.86 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 12 ~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....++|++++++++++|+++|++.++.+++++++||||.++ ++++..+++|+++||+++++|++++.
T Consensus 13 ~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 13 LLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999866 68999999999999999999998764
No 33
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.47 E-value=1.4e-13 Score=91.32 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 106 GLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 106 ~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|+
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999997 69999999999999999999999998874
No 34
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.46 E-value=3.6e-13 Score=105.80 Aligned_cols=72 Identities=22% Similarity=0.491 Sum_probs=68.5
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
...+.++++++++++++++|++|+|+++++++++.+||||.++|.++..+++|+++|||+++++++.++.++
T Consensus 13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~ 84 (159)
T PRK06558 13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999998743
No 35
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.46 E-value=2.6e-13 Score=95.29 Aligned_cols=63 Identities=38% Similarity=0.637 Sum_probs=55.7
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGII 154 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~l 154 (165)
+...+.+.+++ |++++++|+|+|.++++++|+++|||| ++++++++.+++|+++||+++++++
T Consensus 13 ~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 13 TTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666655 566689999999999999999999997 9999999999999999999999986
No 36
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.45 E-value=3.7e-13 Score=98.51 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|++++++++++|+++|++.++.+++++++||||.++++++..+++|+++||+++++|++++.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999999999999999999999999999999999999999999999998764
No 37
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.44 E-value=4.3e-13 Score=94.54 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+..++++++++++++|+++|++.++.+++++++||||.. +++++..+|.|+++||++++++++++.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999965 459999999999999999999999886
No 38
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.43 E-value=6e-13 Score=93.45 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 11 ~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...+.++|+++++ ++++|+++|++.++++++++++||||.++| +++..+|+|+++||++++++++++.
T Consensus 7 ~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 7 VMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3447899999999 999999999999999999999999996544 6889999999999999999998764
No 39
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.42 E-value=9.9e-13 Score=92.08 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|++++++++++|+++|++.++.+++++++||||..+ ++++..+++|+.+||+|++++++++.
T Consensus 6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999765 69999999999999999999999875
No 40
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.39 E-value=2.2e-12 Score=101.23 Aligned_cols=66 Identities=30% Similarity=0.507 Sum_probs=62.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
|+.+++++++|++++++++|+++.+++++++.+||||.++|+++..+++|+++|||+++++++..+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~ 67 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999998776443
No 41
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.38 E-value=2.2e-12 Score=90.96 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+.++|++++++++++|+++|++.++.+++++++||||.+ +++++..+|+|+.++|++++++++++.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999974 457999999999999999999999876
No 42
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.33 E-value=6.2e-12 Score=88.89 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|++++++++++|+++|+++++.+++++++||||.++ .+++..+++|+.+||++++++++++.
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999755 47788999999999999999998876
No 43
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=7.9e-12 Score=86.75 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccch----hhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
...++|+++++ ++++|+++|++.++.+++++++|||| +++++++..++.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 99999999999999999999999999 5777999999999999999999999875
No 44
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.31 E-value=1e-11 Score=88.45 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....+|++++++++++|+++|++++..+++++++||||.. +.+++..++.|+.+||++++++++++.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999974 558888999999999999999999876
No 45
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.30 E-value=1.1e-11 Score=91.24 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|+++++|++++|+++|++.++.+++++++||||..++ +++..+++|+.+||++++++++++.
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999999999999999997655 8999999999999999999999886
No 46
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.27 E-value=1.8e-11 Score=89.32 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|+++++ ++++|+++|++.++.+++++++||||.. +++++..+++|+.+||++++++++++.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 9999999999999999999999999974 458899999999999999999998763
No 47
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.27 E-value=2.9e-11 Score=93.32 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=65.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~ 162 (165)
+.++++++++++++++|+||+++++++++....|+||.|.|.++..+++|+++|||+++++++..+.+.+
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~ 73 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999876543
No 48
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.26 E-value=2.6e-11 Score=84.74 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|+++++ ++++|+++|++....+.+++++||||. ++++++..++.|+.+||++++++++++.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 999999999999999999999999996 5558999999999999999999998764
No 49
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.22 E-value=5.1e-11 Score=86.95 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++++++++++++|+++|++.+..+.+++++||||. ++++++..++.|+.+||++++++++.+.
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa 83 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999996 5569999999999999999999999987
No 50
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.21 E-value=8.3e-11 Score=87.04 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=63.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~ 162 (165)
+.++++.+++++++++|+||+++.+..-...-.++||.++|.++..+|+|+++||||++++++..|.+.+
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~ 71 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK 71 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 5678999999999999999999999777776677799999999999999999999999999999997643
No 51
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.15 E-value=1.2e-10 Score=79.09 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=52.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 031125 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 20 ~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li 76 (165)
+++++++++|+++|++.+..+.+++++||||. ++++++..++.|+.+||+++++|++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999996 4558999999999999999999985
No 52
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.15 E-value=1.5e-10 Score=78.70 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=49.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 031125 22 ALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 22 a~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li 76 (165)
+.+++++|+++|++.+..+++++++||||. ++.+++..++.|+.+||++++++++
T Consensus 7 ~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 7 ALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677899999999999999999999996 4558999999999999999999986
No 53
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.14 E-value=2.8e-10 Score=80.22 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|++++++++++|+++|++.+..+++++++||||. ++++++..++.|+..+|.+++.++..+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999996 5569999999999999998888887765
No 54
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.12 E-value=1.7e-10 Score=76.54 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 26 s~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
+++|+++|++.+..+++++++||||. ++++++..++.|+.+||++++++++++
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 777999999999999999999999875
No 55
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.11 E-value=1.4e-10 Score=81.51 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHH
Q 031125 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI 75 (165)
Q Consensus 20 ~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~l 75 (165)
.++.|++++|+++|++.+..+++++++||||. ++++++..++.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677999999999999999999999996 455899999999999999999986
No 56
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=98.98 E-value=2e-09 Score=83.15 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~ 77 (165)
.+.+++++++++++..-|++.+++++.+.+++.+||||.++|+++..+|+|+.++|+|+++++..
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999998864
No 57
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.61 E-value=4.9e-08 Score=76.03 Aligned_cols=77 Identities=27% Similarity=0.346 Sum_probs=69.3
Q ss_pred CCCCCC---cchh--HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 4 SFSGDE---TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 4 ~~~~~~---~~~~--~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
.++.|+ +.++ +..+++++.+++++.++++.+++.+++.+....|||+.+..+++..+|.|++++|||+++..+.+
T Consensus 73 g~i~~~~~~~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~ 152 (156)
T KOG0232|consen 73 GDIGPKGTAYSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLT 152 (156)
T ss_pred cccCCcccccchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345555 5565 78899999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 031125 79 GI 80 (165)
Q Consensus 79 ~i 80 (165)
+.
T Consensus 153 ~~ 154 (156)
T KOG0232|consen 153 VG 154 (156)
T ss_pred CC
Confidence 53
No 58
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=98.56 E-value=1.7e-07 Score=70.06 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=63.8
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
.+..+.+++++|... ++..++|.|+|.+.++-+.+.+|||. +|...+++.++.|+.++|.+.++|+++|.
T Consensus 63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 467889999999975 67778999999999999999999994 89999999999999999999999999874
No 59
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.27 E-value=5.1e-08 Score=77.42 Aligned_cols=72 Identities=31% Similarity=0.461 Sum_probs=68.2
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
...-|+.++.+++++++.++++||+=..+++-+++--|-|++.+|.++...|||+++||++++++++..|..
T Consensus 38 sp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~ 109 (196)
T KOG0233|consen 38 SPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLE 109 (196)
T ss_pred ChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhc
Confidence 346789999999999999999999999999999999999999999999999999999999999999998864
No 60
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=97.43 E-value=0.00029 Score=52.93 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
.-.++|++.+. .+..|++.|++....+-+-+.+|||.+ |...++.+++.|+.++|.|-++|++++.
T Consensus 67 aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 67 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 35789998876 566788899999999999999999985 5557899999999999999999999864
No 61
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=31.63 E-value=1.1e+02 Score=23.79 Aligned_cols=39 Identities=28% Similarity=0.545 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 031125 102 CGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIF 140 (165)
Q Consensus 102 ~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~ 140 (165)
.|+.++.+|+-....++++++-+..|||+..-++++..+
T Consensus 79 ~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIi 117 (140)
T PF04284_consen 79 KGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTII 117 (140)
T ss_pred HHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHH
Confidence 456677778888889999999999999988877776544
No 62
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.33 E-value=2.4e+02 Score=22.09 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 52 VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 52 ~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++.+....|-..++--++++.++..+
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~ 89 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSR 89 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhc
Confidence 4557788888888888778777777654
Done!