Query 031125
Match_columns 165
No_of_seqs 197 out of 1640
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 5.2E-36 1.8E-40 233.1 17.9 146 10-158 10-155 (156)
2 2xqu_A C15_RING, ATP synthase 99.7 1.8E-17 6.2E-22 116.1 10.5 74 88-161 4-81 (82)
3 2wgm_A ATP synthase subunit C, 99.7 1.1E-16 3.8E-21 113.7 10.3 75 88-163 8-86 (89)
4 1wu0_A ATP synthase C chain; A 99.7 8.2E-17 2.8E-21 110.2 8.4 67 92-158 2-72 (72)
5 2x2v_A ATP synthase subunit C; 99.7 2.4E-16 8.3E-21 107.0 9.5 63 95-157 3-69 (69)
6 1a91_A F1FO ATPase subunit C; 99.7 7.7E-16 2.6E-20 107.1 10.0 67 93-159 8-78 (79)
7 2xnd_J ATP synthase lipid-bind 99.6 6.8E-16 2.3E-20 105.6 3.0 66 91-157 3-72 (72)
8 4f4s_A ATP synthase subunit 9, 99.6 1.2E-14 3.9E-19 100.1 9.1 69 89-158 3-75 (76)
9 2xqu_A C15_RING, ATP synthase 99.6 1.7E-14 6E-19 100.8 8.8 72 9-80 4-79 (82)
10 2x2v_A ATP synthase subunit C; 99.5 2.4E-14 8.1E-19 97.1 7.5 63 16-78 3-69 (69)
11 1wu0_A ATP synthase C chain; A 99.5 1.7E-14 5.8E-19 98.6 6.6 65 14-78 3-71 (72)
12 1a91_A F1FO ATPase subunit C; 99.4 2.9E-13 1E-17 94.0 8.3 66 14-79 8-77 (79)
13 2wgm_A ATP synthase subunit C, 99.4 3.1E-13 1.1E-17 95.8 8.3 69 11-80 10-82 (89)
14 2bl2_A V-type sodium ATP synth 99.4 5.4E-13 1.8E-17 103.4 9.6 70 91-160 12-81 (156)
15 2xnd_J ATP synthase lipid-bind 99.3 5.6E-13 1.9E-17 91.1 2.7 63 14-77 5-71 (72)
16 4f4s_A ATP synthase subunit 9, 99.2 4.7E-11 1.6E-15 82.1 6.4 67 12-79 5-75 (76)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=100.00 E-value=5.2e-36 Score=233.10 Aligned_cols=146 Identities=26% Similarity=0.487 Sum_probs=140.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccch
Q 031125 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~ 89 (165)
.+|+++++|++++++++++|++||+++++.+.+++.+||||.++|++++++|||+++||||++++++.++++++ +++
T Consensus 10 ~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~~---~~~ 86 (156)
T 2bl2_A 10 GGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD---MSV 86 (156)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCTT---CCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999988753 578
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
.++++++++|+++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+++++++++++
T Consensus 87 ~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 87 VQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.74 E-value=1.8e-17 Score=116.08 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=70.1
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~ 161 (165)
++.++++++++++++|++++++|+|||+++++++++++|||| +|+++++..+++|+++||++++++++++.+++
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~ 81 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999998 78889999999999999999999999998764
No 3
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.70 E-value=1.1e-16 Score=113.67 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=70.6
Q ss_pred chHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 031125 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQSR 163 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~~~~~ 163 (165)
++.++++++++|+++ ++++++|+|||+++++++++++|||| +|++++++.+++|+++||++++++++++++++-+
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~~ 86 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVG 86 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999998 6999999999999999999999999999887643
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.69 E-value=8.2e-17 Score=110.17 Aligned_cols=67 Identities=28% Similarity=0.498 Sum_probs=62.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
+++++++++++|++++++|+|||+++++++++++|||| +|+++++..+++|+++||++++++++++.
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~ 72 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999998 77779999999999999999999998763
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.68 E-value=2.4e-16 Score=107.01 Aligned_cols=63 Identities=24% Similarity=0.472 Sum_probs=59.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 95 HLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 95 ~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~ 157 (165)
++++++++|++++++|+|||+++++++++++|||| +|+++++..+++|+++||+++++++++|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999 6666999999999999999999999864
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.65 E-value=7.7e-16 Score=107.08 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=62.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031125 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~~ 159 (165)
+..+++++.+|++++++|+|||+++++++++++|||| +|++++++.+++|+++||++++++++++..
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 78 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999998 888899999999999999999999998763
No 7
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.57 E-value=6.8e-16 Score=105.59 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=61.2
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~ 157 (165)
++++++++|+++ ++++++|+|+|+++++++++++|||| +|++++++.+++|+++||+++++++++|
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456789999999 99999999999999999999999997 7889999999999999999999998764
No 8
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.57 E-value=1.2e-14 Score=100.13 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=64.5
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~li~~a~~E~~ai~glvia~ll~~~ 158 (165)
+..+.+++++|++. ++..++|+|+|.+.++.+++++|||| +|+.++++.++.|+.+||+|+++++++|.
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999998 89999999999999999999999995 89999999999999999999999999874
No 9
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.55 E-value=1.7e-14 Score=100.84 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=65.7
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031125 9 ETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 9 ~~~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
.+...+.++|++++++++++|+++|+++++.+++++.+||||. ++++++..+|+|+++||++++++++.+..
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445689999999999999999999999999999999999995 56699999999999999999999998863
No 10
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.53 E-value=2.4e-14 Score=97.15 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHh----HHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 16 ~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~ 78 (165)
++|++++++++++|+++|+++++.+++++.+||||.++| +++..+|+|+++||++++++++++
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999996655 999999999999999999999863
No 11
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.52 E-value=1.7e-14 Score=98.61 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhhHh----HHHHHHHHHHHHHHHHHHHHHHHh
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~ 78 (165)
+.++|++++++++++|+++|+++++.+++++.+||||.++| +++..+|+|+++||++++++++++
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999996555 999999999999999999999875
No 12
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.45 E-value=2.9e-13 Score=93.99 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+..+++++++|++++|+++|+++++.+++++.+||||. ++++++..+|+|+++||+|++++++++.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999994 5569999999999999999999999764
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.44 E-value=3.1e-13 Score=95.85 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031125 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 11 ~~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
...+.++|+++++ ++++|+++|+++++.+++++.+||||. ++++++..+++|+++||++++++++.+..
T Consensus 10 ~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 10 VLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999 999999999999999999999999995 88899999999999999999999999864
No 14
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.43 E-value=5.4e-13 Score=103.41 Aligned_cols=70 Identities=20% Similarity=0.448 Sum_probs=67.8
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031125 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~li~~a~~E~~ai~glvia~ll~~~~~ 160 (165)
..+.+++++++++++++++++|+++++++++++.+||||+++|+++..+++|+++|||+++++++.++.+
T Consensus 12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~ 81 (156)
T 2bl2_A 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG 81 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999875
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.31 E-value=5.6e-13 Score=91.05 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchhh----HhHHHHHHHHHHHHHHHHHHHHHHH
Q 031125 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 14 ~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~ 77 (165)
+.++|+++++ ++++|+++|+++++.+++++.+||||.+ +++++..+|+|++++|+|+++++++
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999 8999999999999999999999999854 4689999999999999999999875
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.17 E-value=4.7e-11 Score=82.08 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcccccchh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031125 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 12 ~~~~~lGa~la~gls~iGs~~G~~~ag~a~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....++|++++. ++.+|+++|++.+..+.+.+.+||||. ++.+++.+++.|+.++|+|+++|++++.
T Consensus 5 ~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 5 LAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999998 889999999999999999999999985 5558999999999999999999999864
Done!