Query 031126
Match_columns 165
No_of_seqs 128 out of 1521
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.1E-40 1.1E-44 218.3 14.4 159 1-165 2-162 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 4.2E-37 9.1E-42 203.7 13.9 154 6-165 3-157 (200)
3 KOG0078 GTP-binding protein SE 100.0 5.4E-36 1.2E-40 201.6 16.1 155 4-164 8-163 (207)
4 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-36 7.1E-41 197.9 12.9 164 1-164 1-167 (210)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4E-35 8.7E-40 194.6 15.1 154 6-164 20-174 (221)
6 KOG0079 GTP-binding protein H- 100.0 4.4E-35 9.6E-40 186.4 10.0 157 1-164 1-158 (198)
7 cd04121 Rab40 Rab40 subfamily. 100.0 9E-34 2E-38 194.7 17.1 153 5-164 3-156 (189)
8 cd04120 Rab12 Rab12 subfamily. 100.0 9E-34 2E-38 196.4 16.8 150 9-164 1-152 (202)
9 KOG0093 GTPase Rab3, small G p 100.0 2.3E-34 5E-39 182.9 11.5 155 5-165 18-173 (193)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.2E-33 4.7E-38 191.8 16.5 154 5-164 2-169 (182)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.1E-33 2.3E-38 190.0 14.1 155 3-163 9-164 (222)
12 cd04133 Rop_like Rop subfamily 100.0 3.1E-33 6.7E-38 190.1 16.4 150 9-164 2-162 (176)
13 KOG0080 GTPase Rab18, small G 100.0 8.8E-34 1.9E-38 182.7 12.6 156 5-165 8-164 (209)
14 KOG0098 GTPase Rab2, small G p 100.0 7.9E-34 1.7E-38 187.1 12.6 154 5-164 3-157 (216)
15 cd04131 Rnd Rnd subfamily. Th 100.0 1.1E-32 2.3E-37 188.0 16.3 150 9-164 2-165 (178)
16 cd04122 Rab14 Rab14 subfamily. 100.0 2E-32 4.3E-37 184.8 16.6 151 8-164 2-153 (166)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.8E-32 8.1E-37 191.4 17.1 154 5-164 10-177 (232)
18 cd04117 Rab15 Rab15 subfamily. 100.0 4.6E-32 9.9E-37 182.2 16.7 151 9-164 1-151 (161)
19 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.2E-32 1.1E-36 188.0 17.5 155 9-164 1-157 (201)
20 cd01875 RhoG RhoG subfamily. 100.0 4E-32 8.8E-37 187.2 16.7 151 8-164 3-166 (191)
21 cd01867 Rab8_Rab10_Rab13_like 100.0 4.9E-32 1.1E-36 183.0 16.4 153 7-164 2-154 (167)
22 cd01865 Rab3 Rab3 subfamily. 100.0 7E-32 1.5E-36 181.9 17.0 152 9-165 2-153 (165)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.5E-32 1.4E-36 183.3 15.9 151 8-164 2-153 (172)
24 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.2E-32 2E-36 184.0 15.9 151 9-164 1-155 (182)
25 cd01864 Rab19 Rab19 subfamily. 100.0 1.7E-31 3.6E-36 180.0 16.9 154 7-165 2-156 (165)
26 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.9E-31 4E-36 180.7 16.7 152 10-164 2-154 (170)
27 KOG0086 GTPase Rab4, small G p 100.0 2.9E-32 6.3E-37 174.5 11.9 158 1-164 2-160 (214)
28 cd04116 Rab9 Rab9 subfamily. 100.0 3E-31 6.4E-36 179.6 17.5 158 5-164 2-160 (170)
29 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.8E-31 3.8E-36 181.6 16.4 151 8-164 1-164 (175)
30 PLN03071 GTP-binding nuclear p 100.0 1.6E-31 3.4E-36 187.7 16.6 151 6-164 11-161 (219)
31 cd04127 Rab27A Rab27a subfamil 100.0 2.2E-31 4.7E-36 181.8 16.4 153 7-164 3-166 (180)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.9E-31 6.4E-36 179.0 16.6 152 8-164 2-153 (166)
33 cd04136 Rap_like Rap-like subf 100.0 2.2E-31 4.8E-36 178.8 15.9 151 9-164 2-152 (163)
34 cd01868 Rab11_like Rab11-like. 100.0 3.4E-31 7.4E-36 178.4 16.5 153 7-164 2-154 (165)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 3.5E-31 7.6E-36 178.4 16.2 155 9-164 1-156 (168)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.2E-31 6.9E-36 185.8 16.1 150 9-164 2-165 (222)
37 cd00877 Ran Ran (Ras-related n 100.0 6.5E-31 1.4E-35 177.4 17.0 148 9-164 1-148 (166)
38 KOG0095 GTPase Rab30, small G 100.0 7.4E-32 1.6E-36 172.1 11.0 156 3-164 2-158 (213)
39 cd04176 Rap2 Rap2 subgroup. T 100.0 6.3E-31 1.4E-35 176.8 16.1 151 9-164 2-152 (163)
40 PF00071 Ras: Ras family; Int 100.0 3.4E-31 7.4E-36 177.9 14.4 149 10-164 1-150 (162)
41 cd04106 Rab23_lke Rab23-like s 100.0 7.5E-31 1.6E-35 176.1 16.0 149 9-164 1-152 (162)
42 cd04175 Rap1 Rap1 subgroup. T 100.0 7.2E-31 1.6E-35 176.7 15.8 150 9-164 2-152 (164)
43 cd04125 RabA_like RabA-like su 100.0 1.2E-30 2.6E-35 179.4 16.9 151 9-164 1-151 (188)
44 PLN03110 Rab GTPase; Provision 100.0 1.3E-30 2.8E-35 182.8 17.1 154 6-164 10-163 (216)
45 cd04111 Rab39 Rab39 subfamily. 100.0 1E-30 2.2E-35 182.7 16.5 153 8-164 2-155 (211)
46 cd04124 RabL2 RabL2 subfamily. 100.0 1.5E-30 3.2E-35 174.9 16.7 147 9-164 1-147 (161)
47 PTZ00369 Ras-like protein; Pro 100.0 1.1E-30 2.4E-35 179.7 16.4 153 7-164 4-156 (189)
48 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-30 3.1E-35 180.6 17.0 153 6-164 4-156 (199)
49 cd04109 Rab28 Rab28 subfamily. 100.0 1.6E-30 3.4E-35 182.4 17.2 153 9-164 1-155 (215)
50 cd01871 Rac1_like Rac1-like su 100.0 1.3E-30 2.9E-35 177.2 16.2 150 9-164 2-164 (174)
51 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.5E-30 3.2E-35 174.4 16.3 150 9-164 2-151 (162)
52 cd04113 Rab4 Rab4 subfamily. 100.0 2.2E-30 4.7E-35 173.8 16.2 151 9-164 1-151 (161)
53 cd01866 Rab2 Rab2 subfamily. 100.0 3.4E-30 7.4E-35 174.2 17.0 153 7-164 3-155 (168)
54 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.6E-30 7.8E-35 174.4 17.1 148 8-160 2-151 (170)
55 smart00173 RAS Ras subfamily o 100.0 2.2E-30 4.8E-35 174.2 15.6 151 9-164 1-151 (164)
56 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-30 3.3E-35 179.2 14.9 151 10-164 1-152 (190)
57 cd04112 Rab26 Rab26 subfamily. 100.0 3E-30 6.6E-35 177.9 16.0 151 9-164 1-152 (191)
58 cd01862 Rab7 Rab7 subfamily. 100.0 6E-30 1.3E-34 173.2 17.0 156 9-164 1-156 (172)
59 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.9E-30 1.1E-34 172.4 16.4 151 8-164 2-153 (164)
60 cd04140 ARHI_like ARHI subfami 100.0 5E-30 1.1E-34 172.9 16.4 153 9-164 2-154 (165)
61 cd04134 Rho3 Rho3 subfamily. 100.0 3.7E-30 7.9E-35 177.2 15.8 150 9-164 1-163 (189)
62 smart00176 RAN Ran (Ras-relate 100.0 3.1E-30 6.8E-35 178.5 15.5 143 14-164 1-143 (200)
63 cd01861 Rab6 Rab6 subfamily. 100.0 8.5E-30 1.8E-34 170.9 16.3 151 9-164 1-151 (161)
64 cd04142 RRP22 RRP22 subfamily. 100.0 7.7E-30 1.7E-34 176.6 16.1 153 9-164 1-163 (198)
65 cd04132 Rho4_like Rho4-like su 100.0 6.7E-30 1.4E-34 175.5 15.7 150 9-164 1-156 (187)
66 KOG0091 GTPase Rab39, small G 100.0 4E-31 8.6E-36 171.0 8.9 157 4-164 4-162 (213)
67 cd04126 Rab20 Rab20 subfamily. 100.0 7.1E-30 1.5E-34 178.8 15.9 147 9-164 1-179 (220)
68 cd04114 Rab30 Rab30 subfamily. 100.0 2.3E-29 4.9E-34 170.1 17.5 158 1-164 1-158 (169)
69 cd04143 Rhes_like Rhes_like su 100.0 9E-30 2E-34 181.4 16.0 155 9-164 1-160 (247)
70 PLN03108 Rab family protein; P 100.0 1.8E-29 3.9E-34 176.4 17.0 153 6-164 4-157 (210)
71 cd01863 Rab18 Rab18 subfamily. 100.0 2.1E-29 4.5E-34 169.0 16.7 151 9-164 1-151 (161)
72 cd04118 Rab24 Rab24 subfamily. 100.0 2E-29 4.4E-34 173.9 16.8 151 9-164 1-155 (193)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.2E-29 4.7E-34 169.4 16.2 149 9-164 1-153 (164)
74 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.2E-29 4.9E-34 171.0 16.2 150 9-164 1-163 (173)
75 smart00175 RAB Rab subfamily o 100.0 2.6E-29 5.5E-34 168.9 16.3 151 9-164 1-151 (164)
76 cd04103 Centaurin_gamma Centau 100.0 1.7E-29 3.6E-34 169.2 15.2 146 9-164 1-148 (158)
77 cd01860 Rab5_related Rab5-rela 100.0 3.6E-29 7.7E-34 168.1 16.5 151 9-164 2-152 (163)
78 smart00174 RHO Rho (Ras homolo 100.0 3E-29 6.6E-34 170.3 15.8 148 11-164 1-161 (174)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 6.8E-29 1.5E-33 167.8 16.5 151 9-164 2-153 (168)
80 cd01873 RhoBTB RhoBTB subfamil 100.0 5.8E-29 1.3E-33 171.7 15.5 150 8-164 2-185 (195)
81 cd04123 Rab21 Rab21 subfamily. 100.0 1E-28 2.3E-33 165.4 16.4 151 9-164 1-151 (162)
82 cd01892 Miro2 Miro2 subfamily. 100.0 7.8E-29 1.7E-33 167.7 15.6 152 6-164 2-155 (169)
83 PLN03118 Rab family protein; P 100.0 1.4E-28 3.1E-33 172.0 17.3 155 4-164 10-166 (211)
84 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.8E-28 3.9E-33 169.7 17.0 149 9-159 1-174 (202)
85 cd04148 RGK RGK subfamily. Th 100.0 2.4E-28 5.2E-33 171.8 15.9 149 9-164 1-152 (221)
86 cd04135 Tc10 TC10 subfamily. 100.0 3.6E-28 7.8E-33 165.0 16.1 150 9-164 1-163 (174)
87 cd04146 RERG_RasL11_like RERG/ 100.0 1.5E-28 3.3E-33 165.6 13.7 149 10-163 1-152 (165)
88 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-28 2.9E-33 166.5 13.0 149 7-164 8-159 (168)
89 KOG0088 GTPase Rab21, small G 100.0 1.3E-29 2.7E-34 163.3 7.5 153 5-163 10-163 (218)
90 cd00154 Rab Rab family. Rab G 100.0 7.3E-28 1.6E-32 160.4 16.1 151 9-164 1-151 (159)
91 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.5E-28 7.5E-33 163.1 13.4 146 9-164 1-150 (159)
92 KOG0395 Ras-related GTPase [Ge 100.0 5.3E-28 1.2E-32 166.3 13.8 152 7-164 2-154 (196)
93 cd01870 RhoA_like RhoA-like su 100.0 1.5E-27 3.3E-32 162.0 15.9 151 9-165 2-165 (175)
94 KOG0081 GTPase Rab27, small G 100.0 3.6E-30 7.8E-35 165.9 2.7 156 4-164 5-170 (219)
95 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.2E-30 9.1E-35 161.2 2.6 147 12-164 1-149 (192)
96 cd04139 RalA_RalB RalA/RalB su 100.0 1.9E-27 4E-32 159.7 15.7 151 9-164 1-151 (164)
97 PTZ00132 GTP-binding nuclear p 100.0 2.8E-27 6.1E-32 165.9 17.1 153 4-164 5-157 (215)
98 smart00177 ARF ARF-like small 100.0 1E-27 2.2E-32 163.1 14.0 148 7-164 12-163 (175)
99 cd04147 Ras_dva Ras-dva subfam 100.0 2.3E-27 5E-32 164.4 15.5 151 10-164 1-152 (198)
100 cd04158 ARD1 ARD1 subfamily. 100.0 1.8E-27 4E-32 161.0 14.2 148 10-165 1-151 (169)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.6E-27 3.4E-32 160.6 13.7 138 11-159 2-144 (164)
102 cd01893 Miro1 Miro1 subfamily. 100.0 3E-27 6.5E-32 159.5 15.2 147 9-164 1-153 (166)
103 cd00157 Rho Rho (Ras homology) 100.0 4.5E-27 9.7E-32 159.0 15.7 150 9-164 1-162 (171)
104 cd00876 Ras Ras family. The R 100.0 4E-27 8.7E-32 157.4 15.0 150 10-164 1-150 (160)
105 cd04154 Arl2 Arl2 subfamily. 100.0 3.1E-27 6.6E-32 160.5 14.4 151 4-164 10-164 (173)
106 PLN00223 ADP-ribosylation fact 100.0 3E-27 6.5E-32 161.6 14.4 149 6-164 15-167 (181)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.9E-27 8.4E-32 161.4 14.8 153 8-164 3-159 (183)
108 KOG0393 Ras-related small GTPa 100.0 3.3E-28 7.1E-33 164.6 8.8 152 7-164 3-168 (198)
109 PTZ00133 ADP-ribosylation fact 100.0 4.9E-27 1.1E-31 160.7 13.9 148 7-164 16-167 (182)
110 cd04129 Rho2 Rho2 subfamily. 100.0 1.3E-26 2.9E-31 159.2 15.9 151 9-165 2-163 (187)
111 cd04137 RheB Rheb (Ras Homolog 99.9 1.3E-26 2.8E-31 158.2 15.3 150 9-164 2-152 (180)
112 cd04157 Arl6 Arl6 subfamily. 99.9 5.8E-27 1.2E-31 157.2 13.0 150 10-164 1-153 (162)
113 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.7E-26 3.8E-31 156.0 15.0 144 10-161 1-149 (167)
114 KOG0097 GTPase Rab14, small G 99.9 4.4E-27 9.4E-32 149.2 11.1 155 4-164 7-162 (215)
115 PLN00023 GTP-binding protein; 99.9 2.4E-26 5.1E-31 166.8 16.4 127 6-132 19-166 (334)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.7E-26 3.7E-31 154.7 13.1 148 10-164 1-151 (160)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.3E-26 5E-31 156.3 13.9 148 7-164 14-165 (174)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.8E-26 6.2E-31 153.4 13.6 145 10-164 1-149 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.2E-26 1.1E-30 153.3 13.0 146 10-164 1-158 (167)
120 cd04151 Arl1 Arl1 subfamily. 99.9 1.6E-25 3.4E-30 149.9 14.0 145 10-164 1-149 (158)
121 cd00879 Sar1 Sar1 subfamily. 99.9 2.3E-25 5.1E-30 153.3 14.3 149 6-164 17-180 (190)
122 PF00025 Arf: ADP-ribosylation 99.9 7.1E-25 1.5E-29 149.1 14.0 152 5-164 11-165 (175)
123 smart00178 SAR Sar1p-like memb 99.9 6.2E-25 1.4E-29 150.6 13.5 149 6-164 15-174 (184)
124 cd04159 Arl10_like Arl10-like 99.9 1E-24 2.2E-29 145.3 13.8 145 11-164 2-150 (159)
125 TIGR00231 small_GTP small GTP- 99.9 8.9E-24 1.9E-28 140.3 15.8 150 8-163 1-152 (161)
126 PF08477 Miro: Miro-like prote 99.9 3.3E-24 7.2E-29 137.0 13.2 117 10-128 1-119 (119)
127 cd01890 LepA LepA subfamily. 99.9 2.7E-24 5.8E-29 146.6 12.4 147 9-164 1-166 (179)
128 KOG4252 GTP-binding protein [S 99.9 1.5E-26 3.2E-31 152.0 0.7 155 4-164 16-170 (246)
129 cd01897 NOG NOG1 is a nucleola 99.9 6E-24 1.3E-28 143.4 13.2 146 9-164 1-157 (168)
130 cd01891 TypA_BipA TypA (tyrosi 99.9 5.2E-24 1.1E-28 147.2 12.3 148 8-163 2-170 (194)
131 cd04171 SelB SelB subfamily. 99.9 6.6E-24 1.4E-28 142.4 11.9 145 9-164 1-155 (164)
132 cd01898 Obg Obg subfamily. Th 99.9 1.4E-23 3E-28 141.8 13.0 150 10-164 2-160 (170)
133 COG1100 GTPase SAR1 and relate 99.9 2.6E-23 5.7E-28 146.0 14.8 153 8-164 5-174 (219)
134 cd04155 Arl3 Arl3 subfamily. 99.9 3E-23 6.4E-28 140.7 14.4 151 4-164 10-164 (173)
135 cd01878 HflX HflX subfamily. 99.9 2.7E-23 5.7E-28 144.6 12.6 147 6-164 39-194 (204)
136 KOG0075 GTP-binding ADP-ribosy 99.9 2.2E-24 4.8E-29 137.4 6.2 150 8-164 20-171 (186)
137 KOG0073 GTP-binding ADP-ribosy 99.9 1.3E-22 2.8E-27 131.5 13.1 151 5-163 13-166 (185)
138 PTZ00099 rab6; Provisional 99.9 1.1E-22 2.4E-27 138.3 13.5 129 31-164 3-131 (176)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.3E-23 1.8E-27 137.7 12.1 147 10-164 2-155 (168)
140 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 6.9E-23 1.5E-27 135.8 10.9 151 5-163 7-157 (216)
141 TIGR02528 EutP ethanolamine ut 99.9 3.4E-23 7.4E-28 136.2 8.2 127 10-164 2-134 (142)
142 cd00882 Ras_like_GTPase Ras-li 99.9 8.3E-22 1.8E-26 129.6 14.8 147 13-163 1-148 (157)
143 cd01879 FeoB Ferrous iron tran 99.9 1.7E-22 3.6E-27 134.9 11.5 138 13-164 1-146 (158)
144 PRK12299 obgE GTPase CgtA; Rev 99.9 3.7E-22 8E-27 147.6 13.6 153 8-164 158-317 (335)
145 TIGR03598 GTPase_YsxC ribosome 99.9 8E-22 1.7E-26 134.6 13.5 149 5-164 15-179 (179)
146 TIGR03156 GTP_HflX GTP-binding 99.9 4.2E-22 9.2E-27 148.3 12.8 145 7-164 188-341 (351)
147 TIGR02729 Obg_CgtA Obg family 99.9 6.6E-22 1.4E-26 146.0 13.2 152 8-164 157-318 (329)
148 TIGR01393 lepA GTP-binding pro 99.9 6.1E-22 1.3E-26 156.0 13.3 147 7-164 2-169 (595)
149 PF02421 FeoB_N: Ferrous iron 99.9 1.5E-22 3.2E-27 133.7 7.7 142 9-164 1-150 (156)
150 cd04105 SR_beta Signal recogni 99.9 1.6E-21 3.4E-26 135.6 13.1 121 10-132 2-124 (203)
151 TIGR00436 era GTP-binding prot 99.9 1.4E-21 3E-26 141.4 12.4 142 10-164 2-153 (270)
152 PRK03003 GTP-binding protein D 99.9 1.7E-21 3.7E-26 150.6 13.1 148 7-164 210-371 (472)
153 PRK03003 GTP-binding protein D 99.9 2.7E-21 5.8E-26 149.5 13.7 143 7-164 37-188 (472)
154 KOG0070 GTP-binding ADP-ribosy 99.9 1.5E-21 3.3E-26 129.3 10.5 121 6-134 15-135 (181)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.3E-21 9.4E-26 146.6 14.6 136 6-159 201-345 (442)
156 PRK04213 GTP-binding protein; 99.9 5.6E-22 1.2E-26 137.6 8.4 148 5-164 6-181 (201)
157 TIGR00487 IF-2 translation ini 99.9 5.6E-21 1.2E-25 150.0 14.2 150 6-164 85-239 (587)
158 cd01895 EngA2 EngA2 subfamily. 99.9 1E-20 2.2E-25 127.8 13.1 147 8-164 2-164 (174)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-20 3.6E-25 124.9 13.7 136 9-164 2-146 (157)
160 cd01881 Obg_like The Obg-like 99.9 4.3E-21 9.3E-26 130.2 10.7 149 13-164 1-166 (176)
161 cd01889 SelB_euk SelB subfamil 99.9 6.9E-21 1.5E-25 131.4 11.7 148 9-164 1-175 (192)
162 PRK05306 infB translation init 99.9 1.5E-20 3.3E-25 151.0 14.7 150 5-164 287-441 (787)
163 PRK05291 trmE tRNA modificatio 99.9 7.8E-21 1.7E-25 145.8 12.3 137 7-164 214-359 (449)
164 cd00881 GTP_translation_factor 99.9 1.1E-20 2.4E-25 129.4 11.9 145 10-164 1-176 (189)
165 PRK15494 era GTPase Era; Provi 99.9 1.9E-20 4.2E-25 139.1 13.2 145 6-164 50-205 (339)
166 TIGR03594 GTPase_EngA ribosome 99.8 4.7E-20 1E-24 141.4 14.1 148 6-164 170-333 (429)
167 PRK05433 GTP-binding protein L 99.8 2.3E-20 5E-25 147.3 12.5 149 5-164 4-173 (600)
168 TIGR00475 selB selenocysteine- 99.8 5.3E-20 1.1E-24 145.0 14.3 143 9-164 1-155 (581)
169 KOG1673 Ras GTPases [General f 99.8 5.9E-21 1.3E-25 123.0 7.3 154 6-164 18-175 (205)
170 CHL00189 infB translation init 99.8 2.4E-20 5.1E-25 148.8 12.2 151 6-164 242-399 (742)
171 KOG1707 Predicted Ras related/ 99.8 6.4E-21 1.4E-25 145.0 8.6 155 5-165 6-165 (625)
172 cd01894 EngA1 EngA1 subfamily. 99.8 3.6E-20 7.8E-25 123.3 11.2 138 12-164 1-147 (157)
173 PRK12296 obgE GTPase CgtA; Rev 99.8 3.8E-20 8.1E-25 142.0 12.6 152 8-164 159-329 (500)
174 TIGR00483 EF-1_alpha translati 99.8 4.5E-20 9.7E-25 141.2 12.8 154 4-164 3-196 (426)
175 PRK11058 GTPase HflX; Provisio 99.8 3.9E-20 8.4E-25 140.7 12.4 146 8-164 197-351 (426)
176 PRK12297 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.9E-24 137.3 14.0 149 8-164 158-316 (424)
177 PRK12317 elongation factor 1-a 99.8 8.6E-20 1.9E-24 139.7 13.0 153 5-164 3-194 (425)
178 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.1E-19 2.3E-24 126.9 11.9 146 10-164 1-183 (208)
179 PRK00454 engB GTP-binding prot 99.8 1.7E-19 3.7E-24 124.5 12.1 149 4-164 20-183 (196)
180 PRK00093 GTP-binding protein D 99.8 2E-19 4.3E-24 138.2 13.3 139 9-164 2-151 (435)
181 cd04163 Era Era subfamily. Er 99.8 2.9E-19 6.4E-24 119.7 12.3 146 8-164 3-158 (168)
182 PRK00093 GTP-binding protein D 99.8 5.9E-19 1.3E-23 135.6 14.8 147 6-164 171-333 (435)
183 PF00009 GTP_EFTU: Elongation 99.8 7.8E-20 1.7E-24 125.7 8.9 150 7-164 2-176 (188)
184 KOG3883 Ras family small GTPas 99.8 1.1E-18 2.3E-23 112.3 13.2 149 6-159 7-159 (198)
185 PRK10218 GTP-binding protein; 99.8 7E-19 1.5E-23 138.6 15.1 148 7-162 4-172 (607)
186 KOG0071 GTP-binding ADP-ribosy 99.8 4.8E-19 1E-23 112.3 11.4 122 7-136 16-137 (180)
187 TIGR00437 feoB ferrous iron tr 99.8 1.9E-19 4.2E-24 142.0 12.0 136 15-164 1-144 (591)
188 PRK09554 feoB ferrous iron tra 99.8 4.6E-19 9.9E-24 143.0 14.2 143 8-164 3-157 (772)
189 PRK12298 obgE GTPase CgtA; Rev 99.8 3.4E-19 7.3E-24 134.2 12.6 152 8-164 159-322 (390)
190 cd01888 eIF2_gamma eIF2-gamma 99.8 1.9E-19 4.2E-24 125.1 10.4 150 9-164 1-188 (203)
191 PRK00089 era GTPase Era; Revie 99.8 5.4E-19 1.2E-23 129.3 12.7 147 7-164 4-160 (292)
192 PRK15467 ethanolamine utilizat 99.8 8.9E-20 1.9E-24 122.1 7.8 130 10-164 3-136 (158)
193 TIGR01394 TypA_BipA GTP-bindin 99.8 5.1E-19 1.1E-23 139.4 12.3 146 9-162 2-168 (594)
194 TIGR03594 GTPase_EngA ribosome 99.8 9.1E-19 2E-23 134.3 13.3 140 10-164 1-149 (429)
195 KOG0074 GTP-binding ADP-ribosy 99.8 1.2E-18 2.6E-23 110.7 11.3 122 4-132 13-134 (185)
196 PRK09518 bifunctional cytidyla 99.8 1.3E-18 2.8E-23 140.3 14.4 144 7-165 274-426 (712)
197 cd01883 EF1_alpha Eukaryotic e 99.8 8.3E-19 1.8E-23 123.3 11.6 147 10-164 1-194 (219)
198 cd00880 Era_like Era (E. coli 99.8 8.9E-19 1.9E-23 116.3 11.1 143 13-164 1-153 (163)
199 PRK09518 bifunctional cytidyla 99.8 6.5E-19 1.4E-23 142.1 12.3 148 7-164 449-610 (712)
200 cd01896 DRG The developmentall 99.8 3E-18 6.4E-23 121.4 14.2 83 10-94 2-91 (233)
201 cd04169 RF3 RF3 subfamily. Pe 99.8 2.9E-18 6.4E-23 123.5 13.2 118 8-133 2-139 (267)
202 cd04168 TetM_like Tet(M)-like 99.8 1.6E-18 3.4E-23 123.0 11.3 115 10-132 1-131 (237)
203 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.5E-18 7.5E-23 117.9 12.6 145 8-163 2-171 (195)
204 COG1084 Predicted GTPase [Gene 99.8 2.6E-18 5.5E-23 123.5 12.2 124 1-132 161-295 (346)
205 TIGR00491 aIF-2 translation in 99.8 2.7E-18 5.9E-23 134.9 13.2 113 8-131 4-135 (590)
206 KOG4423 GTP-binding protein-li 99.8 8.7E-22 1.9E-26 130.3 -5.5 160 6-165 23-184 (229)
207 KOG0462 Elongation factor-type 99.8 2.1E-18 4.5E-23 130.8 11.0 151 6-164 58-224 (650)
208 COG1159 Era GTPase [General fu 99.8 3.6E-18 7.8E-23 121.5 11.1 145 7-163 5-160 (298)
209 cd01885 EF2 EF2 (for archaea a 99.8 2.4E-18 5.2E-23 120.7 10.1 114 9-130 1-138 (222)
210 PRK04004 translation initiatio 99.8 9.9E-18 2.1E-22 132.1 14.0 114 6-130 4-136 (586)
211 cd04167 Snu114p Snu114p subfam 99.8 6.4E-18 1.4E-22 118.3 10.8 114 9-130 1-136 (213)
212 cd01876 YihA_EngB The YihA (En 99.8 1.3E-17 2.9E-22 111.9 11.8 141 10-163 1-159 (170)
213 COG2229 Predicted GTPase [Gene 99.8 2.6E-17 5.7E-22 109.2 12.4 147 5-162 7-165 (187)
214 COG1160 Predicted GTPases [Gen 99.8 6.9E-18 1.5E-22 126.1 10.1 139 9-157 4-152 (444)
215 KOG0076 GTP-binding ADP-ribosy 99.8 1.6E-18 3.5E-23 113.6 6.0 149 7-164 16-176 (197)
216 COG0486 ThdF Predicted GTPase 99.8 1.7E-17 3.6E-22 124.4 12.0 141 6-163 215-364 (454)
217 COG0481 LepA Membrane GTPase L 99.8 1.5E-17 3.2E-22 124.5 11.3 154 3-164 4-175 (603)
218 cd01886 EF-G Elongation factor 99.7 5.3E-17 1.1E-21 117.2 13.6 113 10-132 1-131 (270)
219 PRK05124 cysN sulfate adenylyl 99.7 3.1E-17 6.7E-22 126.7 13.1 152 4-164 23-214 (474)
220 PRK04000 translation initiatio 99.7 1.2E-17 2.5E-22 127.2 10.6 156 2-164 3-190 (411)
221 PRK12735 elongation factor Tu; 99.7 3.4E-17 7.4E-22 124.2 13.0 150 4-163 8-181 (396)
222 TIGR03680 eif2g_arch translati 99.7 1.6E-17 3.5E-22 126.3 11.1 153 6-164 2-185 (406)
223 PRK10512 selenocysteinyl-tRNA- 99.7 4.7E-17 1E-21 128.9 14.0 144 10-164 2-155 (614)
224 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-16 2.8E-21 115.5 14.6 117 8-132 4-158 (276)
225 PLN03126 Elongation factor Tu; 99.7 5.5E-17 1.2E-21 125.0 13.2 149 4-162 77-249 (478)
226 PF09439 SRPRB: Signal recogni 99.7 1.1E-17 2.4E-22 112.9 7.9 121 8-133 3-128 (181)
227 PLN00043 elongation factor 1-a 99.7 4.5E-17 9.8E-22 124.9 12.0 151 4-164 3-202 (447)
228 TIGR00485 EF-Tu translation el 99.7 5.7E-17 1.2E-21 123.0 12.4 148 5-162 9-180 (394)
229 CHL00071 tufA elongation facto 99.7 8.5E-17 1.8E-21 122.6 13.2 149 4-162 8-180 (409)
230 TIGR02034 CysN sulfate adenyly 99.7 4.7E-17 1E-21 123.8 11.6 147 9-164 1-186 (406)
231 COG1160 Predicted GTPases [Gen 99.7 1.6E-16 3.5E-21 118.9 13.5 149 7-165 177-341 (444)
232 cd04170 EF-G_bact Elongation f 99.7 1.3E-16 2.9E-21 115.3 12.4 113 10-132 1-131 (268)
233 PF01926 MMR_HSR1: 50S ribosom 99.7 2.7E-16 5.8E-21 100.0 12.3 106 10-126 1-116 (116)
234 PRK12736 elongation factor Tu; 99.7 2E-16 4.3E-21 120.0 13.1 148 4-161 8-179 (394)
235 TIGR00503 prfC peptide chain r 99.7 2E-16 4.2E-21 123.4 12.8 120 5-132 8-147 (527)
236 PRK05506 bifunctional sulfate 99.7 1.7E-16 3.6E-21 126.8 12.1 151 5-164 21-210 (632)
237 KOG1489 Predicted GTP-binding 99.7 1.5E-16 3.3E-21 113.8 10.3 151 7-163 195-355 (366)
238 PTZ00141 elongation factor 1- 99.7 4.2E-16 9.1E-21 119.6 13.4 151 4-163 3-201 (446)
239 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.6E-16 7.8E-21 110.1 11.9 113 10-132 1-153 (224)
240 PRK00741 prfC peptide chain re 99.7 1.8E-16 3.9E-21 123.6 11.3 120 6-133 8-147 (526)
241 COG0218 Predicted GTPase [Gene 99.7 7.1E-16 1.5E-20 104.4 12.3 117 5-132 21-150 (200)
242 TIGR00484 EF-G translation elo 99.7 7.1E-16 1.5E-20 124.3 14.5 118 5-132 7-142 (689)
243 COG5256 TEF1 Translation elong 99.7 5.1E-16 1.1E-20 114.8 11.9 155 4-165 3-201 (428)
244 PRK00049 elongation factor Tu; 99.7 9.6E-16 2.1E-20 116.3 13.4 148 4-162 8-180 (396)
245 cd04104 p47_IIGP_like p47 (47- 99.7 6.8E-16 1.5E-20 106.9 11.2 112 8-131 1-121 (197)
246 COG0370 FeoB Fe2+ transport sy 99.7 6.9E-16 1.5E-20 120.3 12.3 141 9-163 4-152 (653)
247 PRK13351 elongation factor G; 99.7 6.4E-16 1.4E-20 124.7 11.5 117 6-132 6-140 (687)
248 COG2262 HflX GTPases [General 99.7 1.7E-15 3.6E-20 112.1 12.6 146 6-163 190-344 (411)
249 PLN03127 Elongation factor Tu; 99.7 2.2E-15 4.9E-20 115.6 13.6 117 5-131 58-191 (447)
250 TIGR00490 aEF-2 translation el 99.7 7.3E-16 1.6E-20 124.6 11.0 123 2-132 13-153 (720)
251 COG0532 InfB Translation initi 99.7 2.8E-15 6.1E-20 114.0 12.4 150 7-164 4-159 (509)
252 PF10662 PduV-EutP: Ethanolami 99.6 1.4E-15 3.1E-20 98.6 8.8 129 9-163 2-134 (143)
253 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 1.3E-15 2.8E-20 107.1 9.2 121 10-133 1-127 (232)
254 PRK12739 elongation factor G; 99.6 6.7E-15 1.5E-19 118.7 14.1 118 5-132 5-140 (691)
255 PRK00007 elongation factor G; 99.6 4E-15 8.6E-20 119.9 12.7 119 5-133 7-143 (693)
256 KOG0072 GTP-binding ADP-ribosy 99.6 7E-16 1.5E-20 98.4 5.5 149 7-164 17-168 (182)
257 COG1163 DRG Predicted GTPase [ 99.6 2.4E-14 5.3E-19 103.0 14.0 86 8-95 63-155 (365)
258 KOG0077 Vesicle coat complex C 99.6 2.1E-15 4.6E-20 98.4 7.8 124 6-137 18-141 (193)
259 KOG1145 Mitochondrial translat 99.6 1.3E-14 2.9E-19 110.5 11.0 147 6-163 151-304 (683)
260 cd01899 Ygr210 Ygr210 subfamil 99.6 4E-14 8.7E-19 104.2 12.5 81 11-91 1-110 (318)
261 PTZ00327 eukaryotic translatio 99.6 1.4E-14 3E-19 111.2 10.3 151 4-163 30-221 (460)
262 KOG1490 GTP-binding protein CR 99.6 5.6E-15 1.2E-19 111.4 7.9 156 1-163 161-329 (620)
263 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 3E-14 6.4E-19 98.6 11.0 118 9-132 1-131 (196)
264 PLN00116 translation elongatio 99.6 1.1E-14 2.4E-19 119.4 9.9 121 2-130 13-163 (843)
265 COG3596 Predicted GTPase [Gene 99.6 5E-15 1.1E-19 104.5 6.3 119 6-132 37-163 (296)
266 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2.2E-13 4.7E-18 99.0 14.1 127 2-132 32-168 (313)
267 PTZ00416 elongation factor 2; 99.6 2.2E-14 4.7E-19 117.5 10.0 120 3-130 14-157 (836)
268 KOG1423 Ras-like GTPase ERA [C 99.6 4.1E-14 8.9E-19 101.1 9.8 121 4-132 68-200 (379)
269 cd01853 Toc34_like Toc34-like 99.5 2.8E-13 6.1E-18 96.7 13.5 126 4-133 27-165 (249)
270 COG1217 TypA Predicted membran 99.5 1.3E-13 2.7E-18 103.6 10.8 149 6-162 3-172 (603)
271 KOG0090 Signal recognition par 99.5 6E-14 1.3E-18 95.4 8.2 122 6-133 36-161 (238)
272 COG0536 Obg Predicted GTPase [ 99.5 1E-13 2.2E-18 100.5 9.7 152 8-163 159-321 (369)
273 PRK07560 elongation factor EF- 99.5 8.7E-14 1.9E-18 112.9 10.0 121 3-131 15-153 (731)
274 KOG0458 Elongation factor 1 al 99.5 4.5E-13 9.6E-18 102.8 12.4 154 5-165 174-372 (603)
275 smart00010 small_GTPase Small 99.5 7E-14 1.5E-18 89.5 6.7 113 9-163 1-114 (124)
276 KOG1191 Mitochondrial GTPase [ 99.5 2.1E-13 4.6E-18 102.9 9.4 126 5-132 265-404 (531)
277 PRK12740 elongation factor G; 99.5 5.2E-13 1.1E-17 107.7 11.9 109 14-132 1-127 (668)
278 PF00735 Septin: Septin; Inte 99.5 2.3E-12 5E-17 93.5 12.6 117 8-132 4-157 (281)
279 PRK09866 hypothetical protein; 99.4 4.5E-12 9.8E-17 99.3 13.7 101 58-164 231-342 (741)
280 PF05049 IIGP: Interferon-indu 99.4 2.6E-13 5.6E-18 101.0 6.1 113 6-129 33-153 (376)
281 PF04548 AIG1: AIG1 family; I 99.4 9.8E-13 2.1E-17 92.1 8.7 118 9-132 1-131 (212)
282 PF00350 Dynamin_N: Dynamin fa 99.4 5.2E-12 1.1E-16 85.1 11.0 62 59-127 103-168 (168)
283 COG2895 CysN GTPases - Sulfate 99.4 4.8E-12 1E-16 92.3 11.2 153 4-163 2-191 (431)
284 COG0480 FusA Translation elong 99.4 3.1E-12 6.7E-17 102.3 11.0 125 5-138 7-149 (697)
285 PTZ00258 GTP-binding protein; 99.4 8.8E-12 1.9E-16 93.8 12.3 88 4-91 17-126 (390)
286 cd00066 G-alpha G protein alph 99.4 6.4E-12 1.4E-16 92.9 10.9 77 56-132 160-243 (317)
287 cd01882 BMS1 Bms1. Bms1 is an 99.4 2E-11 4.3E-16 86.2 12.3 141 6-162 37-183 (225)
288 smart00275 G_alpha G protein a 99.4 1.5E-11 3.2E-16 91.7 11.6 75 57-131 184-265 (342)
289 PRK14845 translation initiatio 99.3 1.2E-11 2.7E-16 102.4 11.5 101 20-131 473-592 (1049)
290 KOG0468 U5 snRNP-specific prot 99.3 8.4E-12 1.8E-16 97.3 8.6 122 1-130 121-262 (971)
291 smart00053 DYNc Dynamin, GTPas 99.3 3.5E-11 7.7E-16 85.2 11.1 70 57-133 125-208 (240)
292 COG4917 EutP Ethanolamine util 99.3 2.1E-12 4.5E-17 80.8 3.7 129 9-163 2-134 (148)
293 KOG1707 Predicted Ras related/ 99.3 9.3E-11 2E-15 90.3 12.9 121 4-132 421-541 (625)
294 KOG0461 Selenocysteine-specifi 99.3 6.7E-11 1.5E-15 86.3 11.1 151 4-163 3-177 (522)
295 PRK09602 translation-associate 99.3 8.3E-11 1.8E-15 89.2 11.4 83 9-91 2-113 (396)
296 KOG3886 GTP-binding protein [S 99.3 1.9E-11 4.2E-16 84.4 6.8 128 8-138 4-137 (295)
297 TIGR00993 3a0901s04IAP86 chlor 99.3 1.8E-10 3.9E-15 90.8 12.7 121 8-132 118-251 (763)
298 COG4108 PrfC Peptide chain rel 99.2 9.7E-11 2.1E-15 87.7 10.1 120 6-133 10-149 (528)
299 PRK13768 GTPase; Provisional 99.2 4.7E-11 1E-15 85.7 7.7 70 58-132 98-177 (253)
300 KOG0082 G-protein alpha subuni 99.2 2.1E-10 4.6E-15 84.7 9.5 84 47-132 187-277 (354)
301 COG5019 CDC3 Septin family pro 99.2 7.3E-10 1.6E-14 81.5 12.0 120 5-132 20-177 (373)
302 KOG3905 Dynein light intermedi 99.2 4.7E-10 1E-14 81.4 10.7 97 5-104 49-152 (473)
303 TIGR02836 spore_IV_A stage IV 99.2 8.2E-10 1.8E-14 83.0 12.2 118 5-129 14-192 (492)
304 KOG1532 GTPase XAB1, interacts 99.2 1.6E-10 3.4E-15 82.0 7.5 26 5-30 16-41 (366)
305 KOG2655 Septin family protein 99.2 6.8E-10 1.5E-14 82.1 11.1 118 7-132 20-173 (366)
306 KOG1954 Endocytosis/signaling 99.1 4.3E-10 9.4E-15 82.8 9.5 118 8-132 58-226 (532)
307 PF03029 ATP_bind_1: Conserved 99.1 6.6E-11 1.4E-15 84.1 5.2 71 58-132 92-171 (238)
308 PRK09601 GTP-binding protein Y 99.1 6.2E-10 1.4E-14 83.0 10.3 83 9-91 3-107 (364)
309 TIGR00157 ribosome small subun 99.1 1.6E-10 3.4E-15 82.6 6.8 87 68-164 24-112 (245)
310 PF05783 DLIC: Dynein light in 99.1 1.5E-09 3.2E-14 83.8 11.7 96 6-104 23-125 (472)
311 cd01900 YchF YchF subfamily. 99.1 1.9E-10 4.1E-15 83.1 6.4 81 11-91 1-103 (274)
312 COG0050 TufB GTPases - transla 99.1 8.1E-10 1.8E-14 79.1 8.7 119 4-132 8-143 (394)
313 KOG1486 GTP-binding protein DR 99.1 4.2E-09 9.1E-14 74.0 11.6 89 8-98 62-157 (364)
314 KOG1547 Septin CDC10 and relat 99.1 2.3E-09 4.9E-14 74.8 9.6 116 8-131 46-198 (336)
315 KOG0410 Predicted GTP binding 99.0 6.1E-10 1.3E-14 80.7 5.7 123 8-132 178-309 (410)
316 PRK09435 membrane ATPase/prote 99.0 1.9E-09 4.1E-14 79.8 8.5 93 57-164 149-249 (332)
317 KOG3887 Predicted small GTPase 99.0 2.8E-09 6.1E-14 74.4 8.3 124 9-136 28-154 (347)
318 KOG0467 Translation elongation 99.0 2E-09 4.4E-14 85.3 8.5 117 4-128 5-135 (887)
319 COG3276 SelB Selenocysteine-sp 99.0 4.8E-09 1E-13 78.8 9.9 142 10-163 2-150 (447)
320 KOG1144 Translation initiation 99.0 1.3E-09 2.8E-14 86.3 7.1 115 9-131 476-606 (1064)
321 TIGR00101 ureG urease accessor 99.0 7.2E-09 1.6E-13 71.8 9.6 90 58-164 93-185 (199)
322 TIGR00073 hypB hydrogenase acc 99.0 3.6E-09 7.9E-14 73.8 7.8 140 7-164 21-196 (207)
323 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.6E-09 5.6E-14 70.1 6.2 54 10-67 85-138 (141)
324 TIGR00750 lao LAO/AO transport 98.9 6.5E-09 1.4E-13 76.5 7.8 94 56-164 126-227 (300)
325 COG5257 GCD11 Translation init 98.9 2.9E-09 6.2E-14 77.2 5.5 151 6-163 8-190 (415)
326 cd01858 NGP_1 NGP-1. Autoanti 98.9 9.1E-09 2E-13 68.7 7.0 56 7-66 101-156 (157)
327 cd04178 Nucleostemin_like Nucl 98.9 1E-08 2.2E-13 69.5 6.6 56 7-66 116-171 (172)
328 cd01856 YlqF YlqF. Proteins o 98.8 1.9E-08 4E-13 68.2 6.7 58 6-67 113-170 (171)
329 KOG1491 Predicted GTP-binding 98.8 4.2E-08 9E-13 71.7 7.6 90 2-91 14-125 (391)
330 COG0012 Predicted GTPase, prob 98.8 3.7E-08 7.9E-13 73.0 7.5 83 9-91 3-108 (372)
331 cd01855 YqeH YqeH. YqeH is an 98.7 2.4E-08 5.1E-13 68.8 5.7 56 8-66 127-189 (190)
332 TIGR03596 GTPase_YlqF ribosome 98.7 4.3E-08 9.4E-13 71.3 7.2 58 6-67 116-173 (276)
333 cd01859 MJ1464 MJ1464. This f 98.7 5E-08 1.1E-12 65.0 6.9 56 7-66 100-155 (156)
334 TIGR00092 GTP-binding protein 98.7 5.3E-08 1.2E-12 72.9 7.7 83 9-91 3-108 (368)
335 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.4E-08 1.4E-12 70.8 7.8 59 6-68 119-177 (287)
336 KOG0448 Mitofusin 1 GTPase, in 98.7 2.1E-07 4.4E-12 73.5 10.4 119 6-132 107-276 (749)
337 KOG2486 Predicted GTPase [Gene 98.7 1.3E-07 2.8E-12 67.5 8.1 115 5-132 133-263 (320)
338 KOG0705 GTPase-activating prot 98.7 2.5E-08 5.4E-13 76.9 4.8 148 6-163 28-177 (749)
339 COG1161 Predicted GTPases [Gen 98.7 5.4E-08 1.2E-12 72.2 6.3 59 6-68 130-188 (322)
340 KOG0460 Mitochondrial translat 98.7 1.6E-07 3.5E-12 68.8 8.0 120 4-132 50-185 (449)
341 TIGR03348 VI_IcmF type VI secr 98.6 1.7E-07 3.7E-12 80.1 9.3 112 11-131 114-257 (1169)
342 cd01851 GBP Guanylate-binding 98.6 5.6E-07 1.2E-11 63.6 9.7 89 5-93 4-104 (224)
343 cd01849 YlqF_related_GTPase Yl 98.6 1.5E-07 3.2E-12 62.7 6.5 56 6-66 98-154 (155)
344 KOG0464 Elongation factor G [T 98.6 1.4E-08 3.1E-13 76.1 1.7 123 3-133 32-170 (753)
345 COG5192 BMS1 GTP-binding prote 98.6 4.4E-07 9.5E-12 70.7 9.0 116 2-133 63-179 (1077)
346 KOG1143 Predicted translation 98.5 2.5E-07 5.4E-12 68.7 6.6 121 4-132 163-318 (591)
347 KOG3859 Septins (P-loop GTPase 98.5 2.6E-07 5.6E-12 66.1 6.1 117 8-132 42-191 (406)
348 COG5258 GTPBP1 GTPase [General 98.5 7.5E-07 1.6E-11 66.4 8.4 120 5-132 114-270 (527)
349 cd01859 MJ1464 MJ1464. This f 98.5 1.1E-07 2.3E-12 63.4 3.5 83 70-163 2-84 (156)
350 PF03193 DUF258: Protein of un 98.5 1.2E-07 2.6E-12 63.2 3.4 24 9-32 36-59 (161)
351 cd01858 NGP_1 NGP-1. Autoanti 98.5 3E-07 6.4E-12 61.4 5.2 79 76-164 4-84 (157)
352 cd01855 YqeH YqeH. YqeH is an 98.5 1.9E-07 4E-12 64.3 4.4 85 70-164 24-114 (190)
353 cd01854 YjeQ_engC YjeQ/EngC. 98.5 3.5E-07 7.6E-12 67.0 5.9 77 77-163 75-152 (287)
354 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.4E-07 7.3E-12 60.0 5.1 76 75-161 6-83 (141)
355 PRK12289 GTPase RsgA; Reviewed 98.5 5E-07 1.1E-11 67.7 6.5 79 76-164 85-164 (352)
356 KOG0469 Elongation factor 2 [T 98.4 6.3E-07 1.4E-11 68.9 6.5 121 2-130 13-163 (842)
357 COG0378 HypB Ni2+-binding GTPa 98.4 7.6E-07 1.6E-11 60.6 6.1 67 83-163 120-189 (202)
358 PRK12288 GTPase RsgA; Reviewed 98.4 6.2E-07 1.3E-11 67.2 6.1 22 11-32 208-229 (347)
359 TIGR03597 GTPase_YqeH ribosome 98.4 7E-07 1.5E-11 67.4 6.3 57 9-68 155-215 (360)
360 PRK13796 GTPase YqeH; Provisio 98.4 6.1E-07 1.3E-11 67.8 5.4 56 9-67 161-220 (365)
361 PRK00098 GTPase RsgA; Reviewed 98.4 6.9E-07 1.5E-11 65.7 5.5 79 77-164 77-156 (298)
362 TIGR03597 GTPase_YqeH ribosome 98.4 4.6E-07 9.9E-12 68.4 4.3 88 67-164 50-142 (360)
363 PRK10463 hydrogenase nickel in 98.4 6.9E-07 1.5E-11 64.9 5.0 47 117-163 230-277 (290)
364 TIGR00157 ribosome small subun 98.4 9.6E-07 2.1E-11 63.2 5.6 24 9-32 121-144 (245)
365 KOG0099 G protein subunit Galp 98.3 2.6E-06 5.6E-11 60.6 7.3 73 57-132 202-284 (379)
366 PF03308 ArgK: ArgK protein; 98.3 4.3E-08 9.3E-13 69.6 -1.7 141 7-163 28-218 (266)
367 PF05621 TniB: Bacterial TniB 98.3 1.7E-06 3.7E-11 62.9 6.4 108 3-127 56-190 (302)
368 PRK12288 GTPase RsgA; Reviewed 98.3 1.7E-06 3.6E-11 64.9 6.3 78 79-164 119-197 (347)
369 PRK12289 GTPase RsgA; Reviewed 98.3 1.3E-06 2.9E-11 65.5 5.8 22 11-32 175-196 (352)
370 cd03112 CobW_like The function 98.3 5.7E-06 1.2E-10 55.3 8.1 21 11-31 3-23 (158)
371 KOG0465 Mitochondrial elongati 98.3 1E-06 2.2E-11 69.0 4.4 120 6-133 37-172 (721)
372 cd01849 YlqF_related_GTPase Yl 98.3 2E-06 4.3E-11 57.3 5.2 74 82-164 1-74 (155)
373 COG1618 Predicted nucleotide k 98.3 1.8E-05 3.9E-10 52.4 9.3 56 7-65 4-59 (179)
374 PF09547 Spore_IV_A: Stage IV 98.3 7.3E-05 1.6E-09 56.9 13.5 138 8-155 17-215 (492)
375 KOG1487 GTP-binding protein DR 98.2 6.6E-06 1.4E-10 58.5 7.5 89 9-99 60-155 (358)
376 COG1703 ArgK Putative periplas 98.2 3.7E-06 7.9E-11 60.9 6.1 143 5-164 48-243 (323)
377 COG1162 Predicted GTPases [Gen 98.2 3.1E-06 6.6E-11 61.6 5.5 59 10-71 166-230 (301)
378 KOG0447 Dynamin-like GTP bindi 98.2 1.8E-05 3.9E-10 61.8 9.8 70 58-133 413-495 (980)
379 KOG0463 GTP-binding protein GP 98.2 4.4E-06 9.5E-11 62.4 6.3 118 7-132 132-288 (641)
380 PF00503 G-alpha: G-protein al 98.2 5.1E-06 1.1E-10 63.5 6.4 83 47-131 227-317 (389)
381 PF06858 NOG1: Nucleolar GTP-b 98.2 1.1E-05 2.4E-10 43.9 5.8 45 79-128 12-58 (58)
382 TIGR01425 SRP54_euk signal rec 98.2 2E-05 4.3E-10 60.5 9.2 67 56-132 182-254 (429)
383 cd01854 YjeQ_engC YjeQ/EngC. 98.2 6.6E-06 1.4E-10 60.3 6.4 25 9-33 162-186 (287)
384 KOG0459 Polypeptide release fa 98.2 5.5E-06 1.2E-10 62.2 5.9 154 5-163 76-274 (501)
385 PRK00098 GTPase RsgA; Reviewed 98.1 8.8E-06 1.9E-10 60.0 5.9 24 9-32 165-188 (298)
386 KOG1424 Predicted GTP-binding 98.1 5.2E-06 1.1E-10 63.9 4.8 55 8-66 314-368 (562)
387 PF03266 NTPase_1: NTPase; In 98.1 1E-05 2.2E-10 54.7 5.7 110 10-127 1-135 (168)
388 COG3523 IcmF Type VI protein s 98.0 1.3E-05 2.8E-10 67.9 6.0 114 11-131 128-270 (1188)
389 cd03115 SRP The signal recogni 98.0 8.7E-05 1.9E-09 50.2 8.6 67 57-133 83-155 (173)
390 KOG0085 G protein subunit Galp 98.0 1.5E-06 3.3E-11 60.7 -0.2 78 55-132 197-281 (359)
391 cd03114 ArgK-like The function 97.9 0.00011 2.4E-09 48.6 7.9 32 57-91 92-123 (148)
392 PRK14722 flhF flagellar biosyn 97.9 0.00016 3.4E-09 54.8 9.3 23 8-30 137-159 (374)
393 PRK13695 putative NTPase; Prov 97.9 0.00014 2.9E-09 49.4 8.2 22 9-30 1-22 (174)
394 TIGR03596 GTPase_YlqF ribosome 97.9 1.9E-05 4.2E-10 57.5 4.1 78 73-163 14-91 (276)
395 KOG2484 GTPase [General functi 97.9 1.5E-05 3.2E-10 59.8 3.4 58 6-67 250-307 (435)
396 KOG1533 Predicted GTPase [Gene 97.8 1.4E-05 3E-10 56.1 2.9 69 58-132 98-178 (290)
397 cd00009 AAA The AAA+ (ATPases 97.8 0.00017 3.7E-09 46.6 7.8 25 8-32 19-43 (151)
398 cd01856 YlqF YlqF. Proteins o 97.8 2.5E-05 5.5E-10 52.8 3.7 78 73-163 12-89 (171)
399 TIGR00064 ftsY signal recognit 97.8 0.0002 4.3E-09 52.2 8.4 66 57-132 155-232 (272)
400 KOG0466 Translation initiation 97.8 1.1E-05 2.3E-10 58.8 1.4 150 5-164 35-230 (466)
401 PF13207 AAA_17: AAA domain; P 97.7 2.9E-05 6.2E-10 49.3 3.0 22 10-31 1-22 (121)
402 PRK12727 flagellar biosynthesi 97.7 0.00029 6.3E-09 55.5 8.9 23 8-30 350-372 (559)
403 PRK10416 signal recognition pa 97.7 0.00015 3.2E-09 54.0 7.0 24 7-30 113-136 (318)
404 COG0563 Adk Adenylate kinase a 97.7 2.9E-05 6.2E-10 52.9 2.9 23 9-31 1-23 (178)
405 PRK13796 GTPase YqeH; Provisio 97.7 5.9E-05 1.3E-09 57.2 4.9 85 69-164 58-148 (365)
406 PRK08118 topology modulation p 97.7 3.3E-05 7.2E-10 52.1 3.1 23 9-31 2-24 (167)
407 PF13555 AAA_29: P-loop contai 97.7 4.3E-05 9.3E-10 42.6 3.0 21 10-30 25-45 (62)
408 PF13671 AAA_33: AAA domain; P 97.7 3.3E-05 7.2E-10 50.4 2.9 21 11-31 2-22 (143)
409 KOG2485 Conserved ATP/GTP bind 97.7 7E-05 1.5E-09 54.6 4.5 62 5-67 140-206 (335)
410 PRK07261 topology modulation p 97.7 4.2E-05 9E-10 51.8 3.2 23 9-31 1-23 (171)
411 PRK14974 cell division protein 97.7 0.00079 1.7E-08 50.4 10.1 66 57-132 223-294 (336)
412 KOG4273 Uncharacterized conser 97.7 0.00026 5.6E-09 50.4 6.9 116 9-132 5-124 (418)
413 COG1116 TauB ABC-type nitrate/ 97.6 5.3E-05 1.2E-09 53.7 3.0 22 11-32 32-53 (248)
414 COG1126 GlnQ ABC-type polar am 97.6 8.2E-05 1.8E-09 51.7 3.6 25 10-34 30-54 (240)
415 COG1136 SalX ABC-type antimicr 97.5 7.1E-05 1.5E-09 52.6 2.9 23 10-32 33-55 (226)
416 cd02038 FleN-like FleN is a me 97.5 0.0011 2.3E-08 43.3 8.3 106 13-130 5-110 (139)
417 cd02019 NK Nucleoside/nucleoti 97.5 9.3E-05 2E-09 42.3 2.9 21 11-31 2-22 (69)
418 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00091 2E-08 45.6 8.2 24 9-32 26-49 (177)
419 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00011 2.4E-09 53.9 3.9 78 73-163 17-94 (287)
420 PF05729 NACHT: NACHT domain 97.5 0.00025 5.5E-09 47.1 5.3 21 11-31 3-23 (166)
421 PRK00771 signal recognition pa 97.5 0.0001 2.2E-09 57.0 3.8 23 7-29 94-116 (437)
422 PRK01889 GTPase RsgA; Reviewed 97.5 0.0004 8.7E-09 52.5 6.8 76 78-163 110-185 (356)
423 cd02042 ParA ParA and ParB of 97.5 0.00071 1.5E-08 41.7 6.8 82 11-104 2-84 (104)
424 PF13521 AAA_28: AAA domain; P 97.5 6.6E-05 1.4E-09 50.3 2.0 22 10-31 1-22 (163)
425 PRK05480 uridine/cytidine kina 97.5 0.00015 3.2E-09 50.6 3.8 25 7-31 5-29 (209)
426 PRK14530 adenylate kinase; Pro 97.5 0.00013 2.9E-09 51.2 3.5 22 9-30 4-25 (215)
427 PF00005 ABC_tran: ABC transpo 97.5 0.00012 2.7E-09 47.4 3.0 24 9-32 12-35 (137)
428 KOG3347 Predicted nucleotide k 97.4 0.0001 2.2E-09 48.3 2.5 26 5-30 4-29 (176)
429 PRK06217 hypothetical protein; 97.4 0.00013 2.8E-09 49.9 3.2 23 9-31 2-24 (183)
430 TIGR00235 udk uridine kinase. 97.4 0.00017 3.6E-09 50.4 3.7 26 5-30 3-28 (207)
431 PRK04195 replication factor C 97.4 0.00053 1.1E-08 54.0 6.8 24 8-31 39-62 (482)
432 COG1117 PstB ABC-type phosphat 97.4 0.00011 2.3E-09 51.2 2.5 21 11-31 36-56 (253)
433 PF00004 AAA: ATPase family as 97.4 0.00013 2.8E-09 46.7 2.9 21 11-31 1-21 (132)
434 PRK14738 gmk guanylate kinase; 97.4 0.00019 4.1E-09 50.1 3.8 29 4-32 9-37 (206)
435 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0019 4.2E-08 38.7 7.8 69 11-93 2-71 (99)
436 smart00382 AAA ATPases associa 97.4 0.00018 3.8E-09 46.1 3.2 25 9-33 3-27 (148)
437 PRK03839 putative kinase; Prov 97.4 0.00015 3.3E-09 49.4 3.0 22 10-31 2-23 (180)
438 PF07728 AAA_5: AAA domain (dy 97.4 0.00017 3.7E-09 47.0 2.9 22 10-31 1-22 (139)
439 PRK11537 putative GTP-binding 97.4 0.0017 3.6E-08 48.4 8.5 23 9-31 5-27 (318)
440 PRK10078 ribose 1,5-bisphospho 97.4 0.00018 4E-09 49.3 3.2 22 10-31 4-25 (186)
441 cd00071 GMPK Guanosine monopho 97.4 0.00018 3.9E-09 47.0 3.0 21 11-31 2-22 (137)
442 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00019 4.1E-09 44.6 2.8 21 9-29 16-36 (107)
443 TIGR02322 phosphon_PhnN phosph 97.3 0.00017 3.8E-09 49.0 2.9 22 10-31 3-24 (179)
444 KOG2423 Nucleolar GTPase [Gene 97.3 6.9E-05 1.5E-09 56.4 0.9 30 5-34 304-333 (572)
445 PF04665 Pox_A32: Poxvirus A32 97.3 0.00019 4.1E-09 51.1 3.1 26 6-31 11-36 (241)
446 COG3839 MalK ABC-type sugar tr 97.3 0.00018 3.8E-09 53.7 3.0 22 11-32 32-53 (338)
447 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 45.8 2.8 21 11-31 1-21 (129)
448 PF03205 MobB: Molybdopterin g 97.3 0.00021 4.6E-09 46.8 3.0 22 10-31 2-23 (140)
449 KOG1424 Predicted GTP-binding 97.3 0.00029 6.2E-09 54.7 4.0 80 68-159 163-244 (562)
450 COG3640 CooC CO dehydrogenase 97.3 0.0041 8.9E-08 44.0 9.3 47 76-130 151-198 (255)
451 PRK10751 molybdopterin-guanine 97.3 0.00031 6.7E-09 47.6 3.7 24 8-31 6-29 (173)
452 PRK05416 glmZ(sRNA)-inactivati 97.3 0.0042 9.2E-08 45.6 9.6 22 9-30 7-28 (288)
453 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0011 2.4E-08 43.0 5.9 23 9-31 23-45 (133)
454 COG0194 Gmk Guanylate kinase [ 97.3 0.00017 3.7E-09 49.0 2.1 25 8-32 4-28 (191)
455 PRK14532 adenylate kinase; Pro 97.3 0.00025 5.4E-09 48.6 3.0 22 10-31 2-23 (188)
456 cd01130 VirB11-like_ATPase Typ 97.3 0.00027 5.9E-09 48.5 3.2 24 8-31 25-48 (186)
457 cd02023 UMPK Uridine monophosp 97.3 0.00023 5.1E-09 49.2 2.9 21 11-31 2-22 (198)
458 cd03111 CpaE_like This protein 97.3 0.0049 1.1E-07 38.3 8.5 63 58-126 44-106 (106)
459 cd04178 Nucleostemin_like Nucl 97.3 0.00049 1.1E-08 46.7 4.3 59 82-148 1-59 (172)
460 PRK10867 signal recognition pa 97.3 0.0023 5.1E-08 49.5 8.4 66 57-132 184-255 (433)
461 PRK12726 flagellar biosynthesi 97.3 0.00055 1.2E-08 51.9 4.9 23 8-30 206-228 (407)
462 PRK14737 gmk guanylate kinase; 97.3 0.00025 5.5E-09 48.7 2.9 25 8-32 4-28 (186)
463 TIGR03263 guanyl_kin guanylate 97.3 0.00027 5.8E-09 48.1 3.0 22 10-31 3-24 (180)
464 cd03238 ABC_UvrA The excision 97.3 0.00031 6.6E-09 47.9 3.2 22 8-29 21-42 (176)
465 PRK13949 shikimate kinase; Pro 97.2 0.00029 6.4E-09 47.6 3.1 22 9-30 2-23 (169)
466 TIGR00959 ffh signal recogniti 97.2 0.0024 5.2E-08 49.4 8.3 66 57-132 183-254 (428)
467 COG3840 ThiQ ABC-type thiamine 97.2 0.0003 6.5E-09 47.9 3.0 23 9-31 26-48 (231)
468 PRK14723 flhF flagellar biosyn 97.2 0.0041 8.8E-08 51.3 9.9 22 9-30 186-207 (767)
469 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6E-09 48.2 2.9 22 9-30 4-25 (188)
470 PRK00300 gmk guanylate kinase; 97.2 0.00039 8.4E-09 48.3 3.6 24 8-31 5-28 (205)
471 PRK14531 adenylate kinase; Pro 97.2 0.00031 6.7E-09 48.1 3.1 23 9-31 3-25 (183)
472 PRK00625 shikimate kinase; Pro 97.2 0.00031 6.7E-09 47.7 3.0 22 10-31 2-23 (173)
473 cd01131 PilT Pilus retraction 97.2 0.00029 6.2E-09 48.9 2.9 21 11-31 4-24 (198)
474 PRK05541 adenylylsulfate kinas 97.2 0.00037 8E-09 47.3 3.4 25 6-30 5-29 (176)
475 PRK07429 phosphoribulokinase; 97.2 0.00041 8.9E-09 51.8 3.9 30 1-30 1-30 (327)
476 PF13191 AAA_16: AAA ATPase do 97.2 0.00031 6.6E-09 47.7 2.8 26 6-31 22-47 (185)
477 PRK13851 type IV secretion sys 97.2 0.00033 7.2E-09 52.6 3.1 25 8-32 162-186 (344)
478 PRK02496 adk adenylate kinase; 97.2 0.00038 8.3E-09 47.6 3.2 22 9-30 2-23 (184)
479 PLN03025 replication factor C 97.2 0.0024 5.2E-08 47.6 7.7 24 8-31 34-57 (319)
480 PRK08233 hypothetical protein; 97.2 0.00043 9.2E-09 47.0 3.3 23 9-31 4-26 (182)
481 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0027 5.8E-08 46.1 7.5 23 10-32 82-104 (264)
482 PF13401 AAA_22: AAA domain; P 97.2 0.00035 7.5E-09 44.8 2.7 24 8-31 4-27 (131)
483 PTZ00088 adenylate kinase 1; P 97.2 0.00045 9.7E-09 49.0 3.3 25 7-31 5-29 (229)
484 PRK06547 hypothetical protein; 97.2 0.00048 1E-08 46.7 3.3 26 6-31 13-38 (172)
485 COG1120 FepC ABC-type cobalami 97.1 0.00038 8.3E-09 50.0 3.0 21 10-30 30-50 (258)
486 cd01428 ADK Adenylate kinase ( 97.1 0.00033 7.1E-09 48.1 2.6 22 10-31 1-22 (194)
487 COG4525 TauB ABC-type taurine 97.1 0.00039 8.5E-09 47.9 2.8 21 10-30 33-53 (259)
488 PRK13900 type IV secretion sys 97.1 0.00036 7.7E-09 52.2 2.9 25 8-32 160-184 (332)
489 PRK13833 conjugal transfer pro 97.1 0.00039 8.5E-09 51.7 3.0 24 8-31 144-167 (323)
490 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00046 1E-08 48.4 3.2 23 10-32 32-54 (218)
491 COG3638 ABC-type phosphate/pho 97.1 0.0004 8.7E-09 49.0 2.8 21 10-30 32-52 (258)
492 cd02025 PanK Pantothenate kina 97.1 0.00038 8.3E-09 49.1 2.7 20 11-30 2-21 (220)
493 TIGR00960 3a0501s02 Type II (G 97.1 0.00049 1.1E-08 48.3 3.2 24 9-32 30-53 (216)
494 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00043 9.3E-09 47.2 2.9 21 11-31 2-22 (183)
495 cd03226 ABC_cobalt_CbiO_domain 97.1 0.0005 1.1E-08 47.8 3.2 24 9-32 27-50 (205)
496 PLN02200 adenylate kinase fami 97.1 0.0006 1.3E-08 48.6 3.6 24 7-30 42-65 (234)
497 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00052 1.1E-08 47.9 3.2 24 9-32 28-51 (211)
498 cd03264 ABC_drug_resistance_li 97.1 0.00045 9.8E-09 48.2 2.9 22 10-31 27-48 (211)
499 cd03292 ABC_FtsE_transporter F 97.1 0.00053 1.1E-08 48.0 3.2 23 10-32 29-51 (214)
500 TIGR03608 L_ocin_972_ABC putat 97.1 0.00053 1.2E-08 47.6 3.2 24 9-32 25-48 (206)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-40 Score=218.30 Aligned_cols=159 Identities=37% Similarity=0.675 Sum_probs=149.8
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|++..++.+||+++|++|+|||+|+.||..+.|.+.+..|.+.++..+.++++++.+.+++|||.||+.|+....+++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceec-eeeeccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLS-HTHTHGH 158 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~-~~~~s~~ 158 (165)
||++|+|||+++.+||+.+..|+.++.+.... ++|.++||||||+.+. +.++ +.++.|+...++. +.++|||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999999999999999998775 7899999999999887 6665 7788999999999 9999999
Q ss_pred cccCCCC
Q 031126 159 TNTHSNQ 165 (165)
Q Consensus 159 ~~~~~~~ 165 (165)
.+.|+++
T Consensus 156 ~~~NVe~ 162 (205)
T KOG0084|consen 156 DSTNVED 162 (205)
T ss_pred CccCHHH
Confidence 9998764
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-37 Score=203.69 Aligned_cols=154 Identities=40% Similarity=0.676 Sum_probs=143.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...+||+++|+.++|||||+.||..+.|.+...++++..+.++.+..++..++|.+|||.|++.|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||+++.+||..+..|.+++.+..+. ++-|.|||||+||.+. +.+. ++.+.+.+.....|+++|||+|.|+|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcCCEEEEEecccccCHH
Confidence 999999999999999999999998774 7778899999999885 5555 88899999999999999999999987
Q ss_pred C
Q 031126 165 Q 165 (165)
Q Consensus 165 ~ 165 (165)
+
T Consensus 157 ~ 157 (200)
T KOG0092|consen 157 E 157 (200)
T ss_pred H
Confidence 4
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-36 Score=201.62 Aligned_cols=155 Identities=36% Similarity=0.633 Sum_probs=146.9
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+++|++++|||+|+.+|..+.+...+..+.+.++...++..++..+.+++|||.||+.|+.....|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
+++|||+++..||+++..|+..+...... .+|++|||||+|+... |.+. +..+.++.-..+.++|+|||+|.|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 99999999999999999999999998776 8999999999999885 6666 888899999999999999999999
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 162 I~ 163 (207)
T KOG0078|consen 162 IE 163 (207)
T ss_pred HH
Confidence 74
No 4
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=197.93 Aligned_cols=164 Identities=74% Similarity=1.114 Sum_probs=148.1
Q ss_pred CCc-ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 031126 1 MPS-RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (165)
Q Consensus 1 m~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 79 (165)
|++ ++...+||+++|++|+|||||++++.+..|...+..+++.++..+.+.+++..+.+++|||.|++.|+++...+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 555 6688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc--hhHHhhhhcceeceeeecc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC--IFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~i~~~~~s~ 157 (165)
++|.+++|||++++.+|+.+..|++++.........+.-|+||+|||.|+....+++++ .....-++.-+++++|+||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999999988777778999999999999876556666 2333345566889999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
|+.+|+.
T Consensus 161 K~~~NV~ 167 (210)
T KOG0394|consen 161 KEATNVD 167 (210)
T ss_pred cccccHH
Confidence 9999863
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-35 Score=194.57 Aligned_cols=154 Identities=36% Similarity=0.605 Sum_probs=138.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
-+.+|++++|+.++||||||+||..+.|...+.+++|.++...++.+.+.++.+++|||.||+.|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||+++..||+....|+....+..... ++.|+|||||.||.+. +++. ++.+..+.-...-++++||+.|+|+-
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~---~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSD---DVIIFLVGNKTDLSDK--RQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCC---ceEEEEEcccccccch--hhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 9999999999999999999998765532 5778899999999987 6555 44455555566789999999999973
No 6
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.4e-35 Score=186.37 Aligned_cols=157 Identities=38% Similarity=0.635 Sum_probs=144.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|.......++.+|+|++|+|||+|+.+|....|...|..+++.++...++.++++.+++.+||+.|++.|+.+...++++
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence 33444566889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.+++++|||+++.+||.+..+|++++...+. .+|-++||||+|+++. +.+. +.+..++....++++++|+|+
T Consensus 81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mgie~FETSaKe 153 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMGIELFETSAKE 153 (198)
T ss_pred CceEEEEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcCchheehhhhh
Confidence 9999999999999999999999999998877 7899999999999876 5544 888999999999999999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
+.|+.
T Consensus 154 ~~NvE 158 (198)
T KOG0079|consen 154 NENVE 158 (198)
T ss_pred cccch
Confidence 99864
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=9e-34 Score=194.66 Aligned_cols=153 Identities=27% Similarity=0.484 Sum_probs=132.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
.+..+||+++|+.|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999999988777777777777777788888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|||++++.+++.+..|+.++..... +.|+||||||+|+... +.+ .+..+.+.....+.++++||++|.|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999999999976543 7899999999999764 333 34556666666778999999999987
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 156 ~ 156 (189)
T cd04121 156 T 156 (189)
T ss_pred H
Confidence 5
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9e-34 Score=196.38 Aligned_cols=150 Identities=36% Similarity=0.654 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+.|+++|+.|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|+..+..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888888888888888888998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhc-ceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSI-ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++++..|+..+..... .+.|+++||||+|+... +.+. ...+.+.+. ..+.++++||++|.|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~ 152 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVD 152 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 99999999999999988765532 27899999999999754 3333 344444433 35679999999999875
No 9
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-34 Score=182.86 Aligned_cols=155 Identities=33% Similarity=0.604 Sum_probs=143.5
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
=+..+|++|+|.+.+|||||+.++....|.....++.+.++..+++.-..+++.+++|||.|++.|+.....++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 35578999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|++||+++.+|++.++.|.-.+...... +.|+|+||||||+.++ |.++ +....+.+.....++++|||+|+|+
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 9999999999999999999999887665 8999999999999887 7776 7778888888889999999999997
Q ss_pred CC
Q 031126 164 NQ 165 (165)
Q Consensus 164 ~~ 165 (165)
.|
T Consensus 172 k~ 173 (193)
T KOG0093|consen 172 KQ 173 (193)
T ss_pred HH
Confidence 54
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.2e-33 Score=191.83 Aligned_cols=154 Identities=19% Similarity=0.401 Sum_probs=130.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
++..+||+++|++|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|......+++.+|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45578999999999999999999999999888888886554 46677889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC----------CCc-hhchhHHhhhhccee-c
Q 031126 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSR-VVCIFCDVFSSIITL-S 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----------~~~-~~~~~~~~~~~~~~i-~ 151 (165)
++|||++++.+++.+ ..|+..+..... +.|++|||||+|+.+. ..+ ...+.++.++..... .
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999997 789999887653 7899999999999652 112 233667777777764 8
Q ss_pred eeeeccccccC-CC
Q 031126 152 HTHTHGHTNTH-SN 164 (165)
Q Consensus 152 ~~~~s~~~~~~-~~ 164 (165)
++++||++|.| ++
T Consensus 156 ~~E~SAk~~~n~v~ 169 (182)
T cd04172 156 YIECSALQSENSVR 169 (182)
T ss_pred EEECCcCCCCCCHH
Confidence 99999999998 64
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=190.01 Aligned_cols=155 Identities=34% Similarity=0.594 Sum_probs=145.2
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
...+..+||+++|++++|||-|+.||..++|...+.+|.+.++.+..+.++++.++.++|||.||+.|+.....+++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
++++|||++.+.+|+.+.+|+.++...... +++|+|||||+||... +.++ +..+.+++...+++.++||.++.
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcCceEEEecccccc
Confidence 999999999999999999999999887654 8999999999999774 5554 89999999999999999999998
Q ss_pred CC
Q 031126 162 HS 163 (165)
Q Consensus 162 ~~ 163 (165)
|+
T Consensus 163 NV 164 (222)
T KOG0087|consen 163 NV 164 (222)
T ss_pred cH
Confidence 86
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.1e-33 Score=190.08 Aligned_cols=150 Identities=29% Similarity=0.533 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++++|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|+.....+++.++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888886555 455677888999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC---------chhchhHHhhhhccee-ceeeecc
Q 031126 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS---------RVVCIFCDVFSSIITL-SHTHTHG 157 (165)
Q Consensus 89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~i-~~~~~s~ 157 (165)
|++++.+|+.+ ..|+..+..... +.|++|||||+|+.+... ....+.++.+...... .++++||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 99999999998 689998876542 789999999999966421 1233566666666666 5999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.|++
T Consensus 156 k~~~nV~ 162 (176)
T cd04133 156 KTQQNVK 162 (176)
T ss_pred CcccCHH
Confidence 9999875
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.8e-34 Score=182.75 Aligned_cols=156 Identities=35% Similarity=0.574 Sum_probs=139.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....+||+++|++|+|||||+-+|....|.+..+.+++.++..+.+.+++..+++.+|||.|++.|+.+.++|++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 46679999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|||++.+++|..+..|++++.-..... ++..++|+||+|...+ |.+. ++...|+.....-++++|||+..|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 99999999999999999999998776643 6777899999998654 6665 5566666666777999999998877
Q ss_pred CC
Q 031126 164 NQ 165 (165)
Q Consensus 164 ~~ 165 (165)
++
T Consensus 163 ~~ 164 (209)
T KOG0080|consen 163 QC 164 (209)
T ss_pred HH
Confidence 53
No 14
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-34 Score=187.08 Aligned_cols=154 Identities=35% Similarity=0.607 Sum_probs=141.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+...+|++++|+.|+|||+|+.+|....|.+.+..|.+.++....+.++++.+++++|||.|++.|++...+|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|||++.+++|..+..|+.++.+.... +..|+|+|||+||... |.+. ++.+.+.+.-.+-+.++||+++.|+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcCceeehhhhhhhhhH
Confidence 9999999999999999999999988643 8899999999999876 4444 6777777777788999999999887
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 157 E 157 (216)
T KOG0098|consen 157 E 157 (216)
T ss_pred H
Confidence 5
No 15
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-32 Score=187.99 Aligned_cols=150 Identities=19% Similarity=0.407 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|......+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6899999999999999999999999888888876554 456778889999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC----------CC-chhchhHHhhhhccee-ceeee
Q 031126 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NS-RVVCIFCDVFSSIITL-SHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----------~~-~~~~~~~~~~~~~~~i-~~~~~ 155 (165)
|++++.+++.+ ..|+..+..... +.|+++||||+||.+. .. ....+.++.+.....+ .++++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 99999999996 789999887653 7899999999999652 11 2333667777777775 79999
Q ss_pred ccccccC-CC
Q 031126 156 HGHTNTH-SN 164 (165)
Q Consensus 156 s~~~~~~-~~ 164 (165)
||++|.| ++
T Consensus 156 SA~~~~~~v~ 165 (178)
T cd04131 156 SAFTSEKSVR 165 (178)
T ss_pred ccCcCCcCHH
Confidence 9999985 54
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2e-32 Score=184.76 Aligned_cols=151 Identities=34% Similarity=0.607 Sum_probs=128.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999998877777777777777778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+...... +.|+++|+||+|+... +.+ .+..+.+.......++++||++|.|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADLEAQ--RDVTYEEAKQFADENGLLFLECSAKTGENVE 153 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCcCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 9999999999999999888665432 6899999999999765 322 234444444456789999999999875
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-32 Score=191.37 Aligned_cols=154 Identities=17% Similarity=0.353 Sum_probs=130.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....+||+++|++|+|||||+.+|..+.|...+.++.+.++ ...+.+++..+.+.+|||+|++.|......+++.+|++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 34678999999999999999999999999888888887665 45677889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC-----------CchhchhHHhhhhccee-c
Q 031126 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----------SRVVCIFCDVFSSIITL-S 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~i-~ 151 (165)
++|||++++.+|+.+ ..|+..+..... +.|++|||||+|+.+.. ..+..+.++.+.....+ .
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 999999999999984 789999887653 67999999999996421 12233667777777777 5
Q ss_pred eeeecccccc-CCC
Q 031126 152 HTHTHGHTNT-HSN 164 (165)
Q Consensus 152 ~~~~s~~~~~-~~~ 164 (165)
++++||++|. +++
T Consensus 164 ~~EtSAktg~~~V~ 177 (232)
T cd04174 164 YLECSAFTSEKSIH 177 (232)
T ss_pred EEEccCCcCCcCHH
Confidence 9999999997 554
No 18
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.6e-32 Score=182.22 Aligned_cols=151 Identities=30% Similarity=0.543 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+...... +.|+++|+||.|+.... +...+....+.......++++||++|.|++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~~-~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPE----GVQKILIGNKADEEQKR-QVGDEQGNKLAKEYGMDFFETSACTNSNIK 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECccccccc-CCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988765432 78999999999997652 222345555555566789999999998875
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.2e-32 Score=188.03 Aligned_cols=155 Identities=33% Similarity=0.597 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||++|++.+...+..+++.++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888877777777 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce-eceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT-LSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+..........++|+++|+||+|+.+.. ....+..+.+..... ..++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~ 157 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGFIGWFETSAKEGINIE 157 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCCceEEEEeCCCCCCHH
Confidence 9999999999999999988765433222378999999999997431 222233344433333 579999999998864
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4e-32 Score=187.18 Aligned_cols=151 Identities=23% Similarity=0.477 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++++|||||+.+|..+.+...+.++.+..+ .....+++..+.+.+||++|++.|+.++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888886544 44556788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----------chhchhHHhhhhcce-eceee
Q 031126 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------RVVCIFCDVFSSIIT-LSHTH 154 (165)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-i~~~~ 154 (165)
||++++.+++.+. .|+..+..... +.|++|||||+||.+... ....+.++.+..... ..+++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 58887765432 789999999999965421 011134455554444 57999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.|++
T Consensus 157 ~SAk~g~~v~ 166 (191)
T cd01875 157 CSALNQDGVK 166 (191)
T ss_pred eCCCCCCCHH
Confidence 9999999875
No 21
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.9e-32 Score=183.05 Aligned_cols=153 Identities=34% Similarity=0.625 Sum_probs=129.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988888888877777777888888999999999999999988899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.++..+..|+..+.+.... +.|+++|+||+|+.+.. ....+....+.+....+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASE----DVERMLVGNKCDMEEKR-VVSKEEGEALADEYGIKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCC----CCcEEEEEECccccccc-CCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999998875432 78999999999997642 222233444555556679999999998875
No 22
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=7e-32 Score=181.94 Aligned_cols=152 Identities=32% Similarity=0.590 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777778777776667777788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSNQ 165 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~ 165 (165)
|++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+....+.+....+++++||++|.|+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~----~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWD----NAQVILVGNKCDMEDER-VVSSERGRQLADQLGFEFFEASAKENINVKQ 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCCEEEEEECcccCccc-ccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999988765432 68999999999997652 1122344445555566799999999998753
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.5e-32 Score=183.29 Aligned_cols=151 Identities=22% Similarity=0.405 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999877777775444 45567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+.+..... +.|+++|+||+|+.+. +.+. +....+.....+.++++||++|.|++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~---~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 153 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTE---DIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFNCPFFETSAALRHYID 153 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCC---CCCEEEEEEChhhhhc--CccCHHHHHHHHHHhCCEEEEEecCCCCCHH
Confidence 99999999999999988887654322 7899999999999764 3333 44555555567789999999999875
No 24
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.2e-32 Score=184.01 Aligned_cols=151 Identities=22% Similarity=0.434 Sum_probs=127.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888889888887778888898999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC----CchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----SRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++++..|+..+...... ..| ++|+||+|+.... .+...+..+.+.......++++||++|.|++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~----~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKT----AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988765432 556 6889999996321 1222344555555666789999999999874
No 25
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-31 Score=180.01 Aligned_cols=154 Identities=32% Similarity=0.582 Sum_probs=125.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998887777777777777778888888899999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce-eceeeeccccccCCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT-LSHTHTHGHTNTHSNQ 165 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~~~ 165 (165)
|||++++.+++.+..|+..+...... +.|+++|+||+|+..... ........+..... ..++++||++|.++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGAS----NVVLLLIGNKCDLEEQRE-VLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCC----CCcEEEEEECcccccccc-cCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 99999999999999999998765332 789999999999976521 11122333333322 3589999999998753
No 26
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.9e-31 Score=180.74 Aligned_cols=152 Identities=31% Similarity=0.568 Sum_probs=126.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888888888877778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.+++.+..|+..+.+..... +.|+++|+||.|+.+..... ..+.++.+.......++++||++|.|+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~---~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~ 154 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPS---SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVR 154 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 999999999999999886654321 57899999999996542211 2233444444445678999999998864
No 27
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=174.54 Aligned_cols=158 Identities=37% Similarity=0.621 Sum_probs=144.4
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|++..+..+|++++|+.|+|||+|+.+|+...+.....-+.+.++....+.+.++.+++++|||.|++.|++..+.|++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 55677889999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~ 159 (165)
+.++++|||++++++|+.+..|+.....+... ++-|+++|||.||.+. +++. .++..|..-..+.+.++|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEnel~flETSa~T 155 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENELMFLETSALT 155 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccceeeeeecccc
Confidence 99999999999999999999999999887764 7788999999999877 6666 566667777778999999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|+.
T Consensus 156 GeNVE 160 (214)
T KOG0086|consen 156 GENVE 160 (214)
T ss_pred cccHH
Confidence 99874
No 28
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3e-31 Score=179.57 Aligned_cols=158 Identities=47% Similarity=0.837 Sum_probs=128.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+...+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999998877777777777777778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc-eeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII-TLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~~~ 163 (165)
++|||++++.+++.+..|+..+..........+.|+++|+||+|+... ....+..+.+.... ...++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 999999999999999999998887654333347899999999999632 22222233332222 246899999999876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 160 ~ 160 (170)
T cd04116 160 A 160 (170)
T ss_pred H
Confidence 4
No 29
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.8e-31 Score=181.64 Aligned_cols=151 Identities=26% Similarity=0.469 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||+.+|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 37999999999999999999999999878888876555 34566788889999999999999999888899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------chh-chhHHhhhhcce-eceee
Q 031126 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVV-CIFCDVFSSIIT-LSHTH 154 (165)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~~-i~~~~ 154 (165)
||++++.+++.+. .|+..+..... +.|+++|+||+|+..... +.+ .+.++.+..... ..+++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 9999999999996 58888766432 789999999999865311 111 134444444343 67999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.|++
T Consensus 155 ~SA~tg~~v~ 164 (175)
T cd01874 155 CSALTQKGLK 164 (175)
T ss_pred ecCCCCCCHH
Confidence 9999999875
No 30
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-31 Score=187.72 Aligned_cols=151 Identities=26% Similarity=0.521 Sum_probs=128.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888888888887777777778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+..... +.|+++||||+|+... ....+.. .+.....+.++++||++|.|++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~--~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR--QVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc--cCCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence 99999999999999999999987643 7899999999999643 2112222 3344456779999999999875
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.2e-31 Score=181.78 Aligned_cols=153 Identities=38% Similarity=0.614 Sum_probs=126.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC----------CeEEEEEEEeCCCccccccchhh
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA 76 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 76 (165)
..+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999988888888777766555543 45688999999999999999999
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeee
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHT 155 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~ 155 (165)
+++.+|++++|||++++.++..+..|+..+....... +.|+++|+||+|+.+. +.+. +..+.+.+...++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE---NPDIVLCGNKADLEDQ--RQVSEEQAKALADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEeCccchhc--CccCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999987654322 7799999999999764 2222 33455555556789999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||++|.+++
T Consensus 158 Sak~~~~v~ 166 (180)
T cd04127 158 SAATGTNVE 166 (180)
T ss_pred eCCCCCCHH
Confidence 999998864
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.9e-31 Score=178.95 Aligned_cols=152 Identities=34% Similarity=0.654 Sum_probs=128.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988877777777777777777888889999999999999999989999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.++..+..|+..+...... +.|+++|+||+|+.... ....+..+.+.....++++++|+++|.|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~----~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTDKR-VVDYSEAQEFADELGIPFLETSAKNATNVE 153 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCC----CCcEEEEEEChhccccc-CCCHHHHHHHHHHcCCeEEEEECCCCcCHH
Confidence 9999999999999999998776422 68999999999997642 122234445555566789999999998865
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.2e-31 Score=178.80 Aligned_cols=151 Identities=30% Similarity=0.502 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999988776666664 444566677888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+...... .+.|+++|+||+|+.+.. ....+....+.......++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDER-VVSREEGQALARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccccc-eecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999988776432 278999999999997642 122233344444445679999999998864
No 34
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.4e-31 Score=178.42 Aligned_cols=153 Identities=35% Similarity=0.631 Sum_probs=128.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999999887778888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+...... +.|+++|+||+|+.... ....+..+.+.....+.++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHLR-AVPTEEAKAFAEKNGLSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECccccccc-cCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999999998876542 68999999999997642 112233344444456779999999998864
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.98 E-value=3.5e-31 Score=178.44 Aligned_cols=155 Identities=28% Similarity=0.510 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888888888887778888888999999999999999989889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCC-CCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASP-SDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|.+++.+++.+..|+..+...... ....+.|+++|+||+|+.++. ....+..+.+.......++++||++|.+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 156 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESKGFKYFETSACTGEGVN 156 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 999999999999999999876542 111268999999999997431 112223333333444679999999998875
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=3.2e-31 Score=185.77 Aligned_cols=150 Identities=20% Similarity=0.436 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+|+|++|+|||||+.+|..+.+...+.++.+.++ ...+.+++..+.+.+||++|++.|...++.+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999888888886555 456778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----------chhchhHHhhhhcce-eceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------RVVCIFCDVFSSIIT-LSHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-i~~~~~ 155 (165)
|++++++++.+. .|...+..... +.|++|||||+|+.+... .+..+..+.+..... +.|+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~-----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCP-----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 999999999984 57766655433 789999999999965310 122255666666666 489999
Q ss_pred ccccccC-CC
Q 031126 156 HGHTNTH-SN 164 (165)
Q Consensus 156 s~~~~~~-~~ 164 (165)
||+++.+ ++
T Consensus 156 SAk~~~~~V~ 165 (222)
T cd04173 156 SSRSSERSVR 165 (222)
T ss_pred CCCcCCcCHH
Confidence 9999875 54
No 37
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=6.5e-31 Score=177.43 Aligned_cols=148 Identities=28% Similarity=0.575 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+......++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788777777777777788899999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ........+.....+.++++||++|.|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 148 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVKAKQITFHRKKNLQYYEISAKSNYNFE 148 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCCHHHHHHHHHcCCEEEEEeCCCCCChH
Confidence 99999999999999999988754 7899999999999743 22222333444556779999999998864
No 38
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.4e-32 Score=172.12 Aligned_cols=156 Identities=35% Similarity=0.592 Sum_probs=142.7
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
+...-.+||+++|..|+|||+|+++|..+-|++....+.+.++..++++++++.+++++|||.|++.|++...++++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
++|++||++..++|+-+.+|+.++...... ++--|+||||.|+.+. ++++ ...+.|++....-+.++||++-.
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qdmyfletsakea~ 155 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQDMYFLETSAKEAD 155 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhhhhhhhhcccchh
Confidence 999999999999999999999999987754 5667899999999876 5555 77888888888889999999988
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|+.
T Consensus 156 nve 158 (213)
T KOG0095|consen 156 NVE 158 (213)
T ss_pred hHH
Confidence 764
No 39
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=6.3e-31 Score=176.80 Aligned_cols=151 Identities=27% Similarity=0.498 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|.+|+|||||++++..+.+.+.+.++.+ +.....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 6999999999999999999999988777666653 455567777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++++..|+..+....... ++|+++|+||+|+.... .........+.....+.++++||++|.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~---~~piviv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYE---KVPIILVGNKVDLESER-EVSSAEGRALAEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhcC-ccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 9999999999999999888764322 78999999999996542 112233444444445678999999998875
No 40
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.98 E-value=3.4e-31 Score=177.88 Aligned_cols=149 Identities=38% Similarity=0.683 Sum_probs=133.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|++++|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+......+++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888888889999999999999999999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.+++.+++.+..|+..+...... +.|+++||||+|+.+. +.+. +..+.+.......++++|++++.+++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~----~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPE----DIPIIVVGNKSDLSDE--REVSVEEAQEFAKELGVPYFEVSAKNGENVK 150 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTT----TSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTTSEEEEEBTTTTTTHH
T ss_pred ccccccccccccccccccccccc----cccceeeecccccccc--ccchhhHHHHHHHHhCCEEEEEECCCCCCHH
Confidence 99999999999999999988762 6899999999999873 3333 45566666666889999999998864
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=7.5e-31 Score=176.14 Aligned_cols=149 Identities=33% Similarity=0.669 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998887778888777766666666 777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||+++++++..+..|+..+..... +.|+++|+||+|+... +.+. +..+.+.....++++++|+++|.+.+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999998876543 7899999999999764 2222 33444555556789999999998764
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=7.2e-31 Score=176.71 Aligned_cols=150 Identities=29% Similarity=0.529 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888766666665443 456677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+...... .+.|+++|+||+|+... +.+. ...+.+.+...+.++++||++|.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWGCAFLETSAKAKINVN 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 999999999999999988765432 27899999999999764 2222 22344444455679999999998864
No 43
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-30 Score=179.45 Aligned_cols=151 Identities=39% Similarity=0.649 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777888888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++..+..|+..+...... +.|+++|+||+|+.+.. .......+.+.....+.++++||++|.|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~evSa~~~~~i~ 151 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNNK-VVDSNIAKSFCDSLNIPFFETSAKQSINVE 151 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCcccc-cCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999998876432 67999999999997541 122233344444455679999999998864
No 44
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.3e-30 Score=182.84 Aligned_cols=154 Identities=34% Similarity=0.598 Sum_probs=132.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 46789999999999999999999999988777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+...... +.|+++|+||+|+.... ....+..+.+.....+.++++||++|.|+.
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piiiv~nK~Dl~~~~-~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADS----NIVIMMAGNKSDLNHLR-SVAEEDGQALAEKEGLSFLETSALEATNVE 163 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCC----CCeEEEEEEChhccccc-CCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999988776432 78999999999996542 222345566666667889999999998864
No 45
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1e-30 Score=182.69 Aligned_cols=153 Identities=29% Similarity=0.588 Sum_probs=128.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999988877788877877777766 4667899999999999999999899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+....... ..|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~---~~~iilvgNK~Dl~~~~-~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPH---RPVFILVGHKCDLESQR-QVTREEAEKLAKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEEEcccccccc-ccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 999999999999999999987765432 67899999999997642 222244455555566789999999999875
No 46
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.5e-30 Score=174.85 Aligned_cols=147 Identities=32% Similarity=0.568 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+.+.+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777666666666777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+..... +.|+++|+||+|+... .......+.+.....++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 147 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVV 147 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999876543 7899999999998532 1122223333345678999999998864
No 47
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=179.74 Aligned_cols=153 Identities=25% Similarity=0.487 Sum_probs=124.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.++++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 458999999999999999999999988777777765444 5666778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. .........+.......++++||++|.++.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~---~~piiiv~nK~Dl~~~~-~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKD---RVPMILVGNKCDLDSER-QVSTGEGQELAKSFGIPFLETSAKQRVNVD 156 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccccccc-ccCHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 999999999999999999887764332 78999999999996541 112223333444445679999999998864
No 48
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.4e-30 Score=180.59 Aligned_cols=153 Identities=36% Similarity=0.597 Sum_probs=128.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+..++|+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999888777788877777777777888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++++++.+..|+..+..... ..|+++|+||+|+.+.. ....+....+.......++++|+++|.++.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPERK-VVETEDAYKFAGQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccccccc-ccCHHHHHHHHHHcCCEEEEEECCCCcCHH
Confidence 99999999999999999998876543 78999999999997642 122233444444455789999999998864
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.6e-30 Score=182.36 Aligned_cols=153 Identities=33% Similarity=0.512 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888988888877777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+........ .+.|+++|+||+|+... +.+. +..+.+.....+.++++||++|.+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~-~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSE-TQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccC-CCceEEEEEECcccccc--cccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999999987754211 25789999999999754 3222 34445555556679999999998864
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.3e-30 Score=177.17 Aligned_cols=150 Identities=25% Similarity=0.456 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+.++..+.+...+.++.. +.+...+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999998877777764 444555667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------chh-chhHHhhhhcce-eceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVV-CIFCDVFSSIIT-LSHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~~-i~~~~~ 155 (165)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... +.+ .+..+.+..... +.++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999985 58887765432 789999999999965311 111 234444444443 478999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||++|.|++
T Consensus 156 Sa~~~~~i~ 164 (174)
T cd01871 156 SALTQKGLK 164 (174)
T ss_pred cccccCCHH
Confidence 999999875
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.5e-30 Score=174.41 Aligned_cols=150 Identities=27% Similarity=0.469 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+...+.++.+.. +.....+++..+.+.+||++|++.+...+..+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999999998877766666543 3555667787888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+.+..... +.|+++|+||+|+... .........+.......++++||++|.|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~---~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSD---DVPMVLVGNKCDLAAR--TVSSRQGQDLAKSYGIPYIETSAKTRQGVE 151 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--eecHHHHHHHHHHhCCeEEEecCCCCCCHH
Confidence 9999999999999999888765332 7899999999999763 222233333444445679999999998864
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=2.2e-30 Score=173.83 Aligned_cols=151 Identities=36% Similarity=0.623 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888877777777788888899999999999999998899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++..+..|+..+...... +.|+++|+||+|+.... ....+....+.......++++|++++.|.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASP----NIVVILVGNKSDLADQR-EVTFLEASRFAQENGLLFLETSALTGENVE 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhcchhc-cCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999988665432 78999999999997642 111222333333344779999999998864
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=3.4e-30 Score=174.20 Aligned_cols=153 Identities=34% Similarity=0.622 Sum_probs=127.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|.+|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998887777777777777778888888999999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+...... +.|+++|+||.|+.+.. ....+..+.+.....+.++++|++.|.|.+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKCDLESRR-EVSYEEGEAFAKEHGLIFMETSAKTASNVE 155 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECccccccc-CCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999988776432 78999999999997542 112233334444445679999999998865
No 54
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=3.6e-30 Score=174.41 Aligned_cols=148 Identities=35% Similarity=0.631 Sum_probs=124.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhccccccEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL 86 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 86 (165)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.++ ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998887777788777777788888888999999999999887 467788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccc
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
|||++++.++..+..|+..+....... ++|+++|+||+|+... +.+. ...+.+.+...+.++++||+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPN---EVPRILVGNKCDLREQ--IQVPTDLAQRFADAHSMPLFETSAKDP 151 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCC---CCCEEEEEECccchhh--cCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence 999999999999999999888765432 7899999999999765 3322 4445555555678999999994
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=2.2e-30 Score=174.23 Aligned_cols=151 Identities=28% Similarity=0.502 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888766666554 344556667788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+.+..... +.|+++|+||+|+.... ....+....+.+...+.++++||++|.|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~---~~pii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 151 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRD---DVPIVLVGNKCDLESER-VVSTEEGKELARQWGCPFLETSAKERVNVD 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccccccc-eEcHHHHHHHHHHcCCEEEEeecCCCCCHH
Confidence 9999999999999998887765432 78999999999997642 122233344444455789999999998864
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.5e-30 Score=179.25 Aligned_cols=151 Identities=28% Similarity=0.462 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999988777777665443 4455677888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.+++.+..|+..+...... ...+.|+++|+||+|+... +.+. .....+.....+.++++||++|.|++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLGCEFIEASAKTNVNVE 152 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 99999999999999988766432 1127899999999999754 2322 33444555556679999999998865
No 57
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3e-30 Score=177.87 Aligned_cols=151 Identities=38% Similarity=0.603 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+||+++|++|+|||||++++..+.+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998753 4566666666666677888889999999999999998888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++++..|+..+...... +.|+++|+||+|+.... .......+.+.......++++||++|.++.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~~-~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGER-VVKREDGERLAKEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhcc-ccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988876543 78999999999996541 122234455555556789999999998764
No 58
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=6e-30 Score=173.25 Aligned_cols=156 Identities=69% Similarity=1.044 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|||||||++++.+..+.....++.+.++........+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777777777777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++....|...+..........++|+++|+||+|+..+..................+++++|+++|.|..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHH
Confidence 9999999999989998887776644445789999999999975321112222222233323689999999998864
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=4.9e-30 Score=172.42 Aligned_cols=151 Identities=26% Similarity=0.492 Sum_probs=122.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||++++.++.+...+.++.+.. ......+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999988766666665433 345556788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+.+..... +.|+++|+||+|+... +.+. +....+.....+.++++||++|.|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRD---EFPMILVGNKADLEHQ--RKVSREEGQELARKLKIPYIETSAKDRLNVD 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCC---CCCEEEEeeCcccccc--ceecHHHHHHHHHHcCCcEEEeeCCCCCCHH
Confidence 99999999999999999888764332 7899999999999764 2222 23334444445679999999998875
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=5e-30 Score=172.88 Aligned_cols=153 Identities=25% Similarity=0.381 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+...+.++.+..+ ......+...+.+.+||++|++.+......+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988776666664333 444556677789999999999999988888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+....... ..+.|+++|+||+|+.... .........+.....+.++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNN-IEKIPIMLVGNKCDESHKR-EVSSNEGAACATEWNCAFMETSAKTNHNVQ 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCC-CCCCCEEEEEECccccccC-eecHHHHHHHHHHhCCcEEEeecCCCCCHH
Confidence 9999999999999988877654321 1278999999999997631 222233344444456679999999998865
No 61
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.7e-30 Score=177.18 Aligned_cols=150 Identities=26% Similarity=0.427 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
.||+++|++|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999877777775554 345566788899999999999999999888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch----------hc-hhHHhhhhc-ceeceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----------VC-IFCDVFSSI-ITLSHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----------~~-~~~~~~~~~-~~i~~~~~ 155 (165)
|++++.+++.+. .|+..+..... +.|+++|+||+|+....... +. +....+... ..+.++++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999886 58888875432 78999999999997652111 11 222233222 23679999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||++|.|++
T Consensus 155 SAk~~~~v~ 163 (189)
T cd04134 155 SAKLNRGVN 163 (189)
T ss_pred cCCcCCCHH
Confidence 999998875
No 62
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3.1e-30 Score=178.45 Aligned_cols=143 Identities=27% Similarity=0.550 Sum_probs=123.0
Q ss_pred EcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCCh
Q 031126 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM 93 (165)
Q Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 93 (165)
+|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988877888888888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 94 ~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.++..+..|+.++.+... +.|+++|+||+|+... . +......+.....+.++++||++|.|++
T Consensus 81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~--~-v~~~~~~~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKDR--K-VKAKSITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--c-CCHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999987653 7899999999999643 2 2222223444566789999999999864
No 63
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=8.5e-30 Score=170.85 Aligned_cols=151 Identities=35% Similarity=0.610 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988877888888888888888888889999999999999998999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+...... +.|+++|+||+|+.... ....+....+.....+.++++|++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 151 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDKR-QVSTEEGEKKAKELNAMFIETSAKAGHNVK 151 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhccccC-ccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 999999999999999988765332 68999999999996431 222233444444445779999999998864
No 64
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=7.7e-30 Score=176.56 Aligned_cols=153 Identities=25% Similarity=0.391 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYRG 80 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 80 (165)
+||+|+|.+|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998877777766666666677888899999999996544221 2234688
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhh-hhcceeceeeeccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVF-SSIITLSHTHTHGH 158 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~-~~~~~i~~~~~s~~ 158 (165)
+|++++|||++++.+++.+..|+..+...... ...++|+++|+||+|+... +.+. +..+.+ .....+.++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999999988776521 1127899999999999764 3322 223333 33456789999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.|++
T Consensus 158 ~g~~v~ 163 (198)
T cd04142 158 YNWHIL 163 (198)
T ss_pred CCCCHH
Confidence 999864
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=6.7e-30 Score=175.51 Aligned_cols=150 Identities=27% Similarity=0.467 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+||+++|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999887777777665543 34444 6778999999999999999998899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chh-chhHHhhhhccee-ceeeeccccccC
Q 031126 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVV-CIFCDVFSSIITL-SHTHTHGHTNTH 162 (165)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~-~~~~~~~~~~~~i-~~~~~s~~~~~~ 162 (165)
||++++.+++++. .|+..+..... +.|+++|+||+|+..... +.+ ....+.+...... .++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCP-----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999986 48777765432 789999999999965421 112 2334444444444 689999999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 155 v~ 156 (187)
T cd04132 155 VE 156 (187)
T ss_pred HH
Confidence 75
No 66
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4e-31 Score=170.96 Aligned_cols=157 Identities=29% Similarity=0.565 Sum_probs=140.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
.=...++++++|++-+|||||+.+|..+.+++-+.++.+.+++...++. ++..+++++|||.|++.|++...+|++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3456799999999999999999999999999999999999998877765 477899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
++++|||+++++||+.+..|+++-....... .++-+.+||+|+||... +++. ++++.++..-.+.++++|+|+|.
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P--~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGP--DKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCC--CeeEEEEeccccchhhh--ccccHHHHHHHHHhcCceEEEecccCCC
Confidence 9999999999999999999999987766522 24456789999999866 6666 88899999999999999999999
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|+|
T Consensus 160 NVe 162 (213)
T KOG0091|consen 160 NVE 162 (213)
T ss_pred cHH
Confidence 986
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=7.1e-30 Score=178.82 Aligned_cols=147 Identities=34% Similarity=0.594 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+|+|.+|+|||||+++|..+.+.. +.++.+.++..... ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 45666655543332 4578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC-----------------Cchhc-hhHHhhhhcce-
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----------------SRVVC-IFCDVFSSIIT- 149 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------------~~~~~-~~~~~~~~~~~- 149 (165)
|++++.+++.+..|+..+..... .+.|+|+|+||+|+.+.. .+.+. +.++.+.+...
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 99999999999988887765432 278999999999997511 12222 44444443322
Q ss_pred -------------eceeeeccccccCCC
Q 031126 150 -------------LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 -------------i~~~~~s~~~~~~~~ 164 (165)
+.++++||++|.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~ 179 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVD 179 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHH
Confidence 679999999999874
No 68
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.3e-29 Score=170.08 Aligned_cols=158 Identities=34% Similarity=0.567 Sum_probs=130.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+ .....++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||++.+......+++.
T Consensus 1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred CC-CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC
Confidence 44 33567999999999999999999999888877777777777777778888888999999999999999888889999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.... +......+.+.......++++|+++|
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~~-~i~~~~~~~~~~~~~~~~~~~Sa~~~ 154 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAERR-EVSQQRAEEFSDAQDMYYLETSAKES 154 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECccccccc-ccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 99999999999999999999999888665432 68999999999997542 22234455666655678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+..
T Consensus 155 ~gv~ 158 (169)
T cd04114 155 DNVE 158 (169)
T ss_pred CCHH
Confidence 8764
No 69
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=9e-30 Score=181.35 Aligned_cols=155 Identities=25% Similarity=0.396 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|..+.+...+.++.+ +.....+.++++.+.+.+||++|++.|......++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877767664 555667778888899999999999999888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCC-----CCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASP-----SDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|++++.+|+++..|+.++...... ....+.|+|+|+||+|+.....-...+..+.+.......++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999988765221 112378999999999997642111223333333333567999999999887
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 160 ~ 160 (247)
T cd04143 160 D 160 (247)
T ss_pred H
Confidence 5
No 70
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=176.37 Aligned_cols=153 Identities=35% Similarity=0.616 Sum_probs=128.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999999888777788888877777888888899999999999999988888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+...... +.|+++|+||+|+... +.+. +..+.+.....+.++++|+++|.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~----~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCccc--cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999998887665432 7899999999999764 2222 34444444456789999999998865
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.1e-29 Score=169.04 Aligned_cols=151 Identities=36% Similarity=0.616 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887666777777776666777888889999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|.+++.+++.+..|+..+....... +.|+++|+||+|+... ....+....+.....++++++|+++|.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~~iv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNN---DIVKMLVGNKIDKENR--EVTREEGLKFARKHNMLFIETSAKTRDGVQ 151 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCC---CCcEEEEEECCccccc--ccCHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 9999999999999998887765433 7899999999999743 222233344444456789999999998864
No 72
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=2e-29 Score=173.93 Aligned_cols=151 Identities=34% Similarity=0.595 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+||+|+|++|+|||||+++|..+.+.. .+.++.+.++....+..++..+.+.+||++|++.+......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998864 5677777777777788889899999999999999998888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+..... +.|+++|+||+|+.+... +.+. ...+.+.....+.++++||++|.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 155 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVD 155 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999988866432 789999999999865321 1221 23344444455678999999998764
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=2.2e-29 Score=169.42 Aligned_cols=149 Identities=29% Similarity=0.523 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--CCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+||+++|++|||||||++++... .+...+.++.+.++........ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 5667777788777766666654 56789999999999999988889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+. +.+. ...+.+.......++++|+++|.+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASK-----HMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQLKFFKTSALRGVGYE 153 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cCCCHHHHHHHHHHcCCeEEEEeCCCCCChH
Confidence 99999999999999999988876542 6899999999999654 2222 23344444455679999999998875
No 74
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=2.2e-29 Score=170.96 Aligned_cols=150 Identities=26% Similarity=0.437 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+|++++|++|+|||||+.++..+.+...+.++. .+.+...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877776665 4555566777888899999999999999999989999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC----------Cchhc-hhHHhhhhccee-ceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVC-IFCDVFSSIITL-SHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~-~~~~~~~~~~~i-~~~~~ 155 (165)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.... .+.+. +.+..+...... .++++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 999999999885 68877765432 68999999999996531 12222 344555554444 79999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||++|.|++
T Consensus 155 Sa~~~~~v~ 163 (173)
T cd04130 155 SALTQKNLK 163 (173)
T ss_pred eCCCCCCHH
Confidence 999999875
No 75
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=2.6e-29 Score=168.87 Aligned_cols=151 Identities=44% Similarity=0.750 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777778777777777888888889999999999999989899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|+..+...... ++|+++|+||+|+.... ....+..+.+.....+.++++|+++|.+..
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~----~~pivvv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 151 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADP----NVVIMLVGNKSDLEDQR-QVSREEAEAFAEEHGLPFFETSAKTNTNVE 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhccccc-CCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999988776532 78999999999987642 112233333444455679999999998753
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=1.7e-29 Score=169.23 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+.++..+.+...+.++ ...+ ...+.++++.+.+.+||++|++.. .+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEE
Confidence 48999999999999999999998887655443 2333 466778888889999999999752 4568899999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhc-ceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSI-ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~i~~~~~s~~~~~~~~ 164 (165)
|++++.+++++..|+..+....... +.|+++|+||+|+.....+.+. +..+.+... ..+.++++||++|.|++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~---~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~ 148 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNIS---EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVE 148 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHH
Confidence 9999999999999999987764322 7899999999998643224444 444455433 35789999999999864
No 77
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=3.6e-29 Score=168.14 Aligned_cols=151 Identities=38% Similarity=0.676 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999987767777777777788888888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++.....|+..+...... ..|+++++||+|+.... ....+....+.....+.++++|+++|.|..
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASP----NIIIALVGNKADLESKR-QVSTEEAQEYADENGLLFFETSAKTGENVN 152 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECccccccC-cCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999988776532 78999999999987542 111123333333444679999999998763
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=3e-29 Score=170.27 Aligned_cols=148 Identities=26% Similarity=0.497 Sum_probs=118.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 90 (165)
|+|+|++|+|||||++++..+.+...+.++.... +......++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999887777666444 345567788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------c-hhchhHHhhhhcce-eceeeecc
Q 031126 91 NSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------R-VVCIFCDVFSSIIT-LSHTHTHG 157 (165)
Q Consensus 91 ~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~-~~~~~~~~~~~~~~-i~~~~~s~ 157 (165)
+++.+++.+. .|+..+..... +.|+++|+||+|+..... + ...+.++.+..... ..++++||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999985 58888876543 789999999999975321 0 11133334444444 37999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.|++
T Consensus 155 ~~~~~v~ 161 (174)
T smart00174 155 LTQEGVR 161 (174)
T ss_pred CCCCCHH
Confidence 9998864
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=6.8e-29 Score=167.80 Aligned_cols=151 Identities=30% Similarity=0.490 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|.+|+|||||++++.++.+...+.++.+.. +...+..++..+.+.+||+||++.|..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999998877666666533 4566677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce-eceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT-LSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~~ 164 (165)
|++++.+++.+..|...+.+..... +.|+++++||.|+.+.. ....+....+...+. ++++++||++|.|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~---~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSD---NVPMVLVGNKADLEDDR-QVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCC---CCCEEEEEEChhccccC-ccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence 9999999999999999887754322 78999999999997652 112223333333333 679999999998875
No 80
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.8e-29 Score=171.68 Aligned_cols=150 Identities=21% Similarity=0.296 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhcCC-----CCCCCCCceee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 031126 8 LLKVIILGDSGVGKTSLMN-QYVNKK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 72 (165)
.+||+++|++|+|||||+. ++.++. +...+.++.+. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 665543 33445566542 222222 246788899999999998753
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC-----------------C
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----------------S 134 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------------~ 134 (165)
....+++.+|++++|||++++.+++.+. .|+..+..... +.|+++||||+|+.+.. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4456789999999999999999999997 59888876543 78999999999996421 1
Q ss_pred chhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 135 RVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 135 ~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+.+. +.++.+.....+.++++||++|.|++
T Consensus 155 ~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~ 185 (195)
T cd01873 155 DILPPETGRAVAKELGIPYYETSVVTQFGVK 185 (195)
T ss_pred CccCHHHHHHHHHHhCCEEEEcCCCCCCCHH
Confidence 2333 66777777777889999999999875
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1e-28 Score=165.41 Aligned_cols=151 Identities=36% Similarity=0.633 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+...+.++.+...........+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766666666666677777787889999999999999999988999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++++++.+..|+..+...... +.|+++|+||+|+.... +...+....+......+++++|+++|.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~ 151 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQR-VVSKSEAEEYAKSVGAKHFETSAKTGKGIE 151 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECccccccc-CCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988876543 68999999999997542 222222333344455678999999998764
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7.8e-29 Score=167.75 Aligned_cols=152 Identities=24% Similarity=0.362 Sum_probs=121.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
.+.+||+++|.+|+|||||+++|..+.+. ..+.++.+..+....+.++++.+.+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999987 77778887777667777888888999999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhccee-ceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITL-SHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~~~ 163 (165)
++|||++++.+++.+..|+..+... .++|+++|+||+|+.+.. .......+.+...... .++++||++|.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML------GEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC------CCCeEEEEEEcccccccc-cccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 9999999999999888888765321 178999999999996542 1111222333333333 3589999999875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 155 ~ 155 (169)
T cd01892 155 N 155 (169)
T ss_pred H
Confidence 4
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.4e-28 Score=172.00 Aligned_cols=155 Identities=31% Similarity=0.538 Sum_probs=122.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+|+|++|+|||||+++|....+. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4456789999999999999999999988764 456676677777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeecccccc
Q 031126 84 CVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
+++|||++++.++..+.. |...+...... .+.|+++|+||+|+... +.+ .+....+.....+.++++||++|.
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTN---QDCVKMLVGNKVDRESE--RDVSREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--CccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999876 55544433222 26799999999999764 222 233333444445679999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 164 ~v~ 166 (211)
T PLN03118 164 NVE 166 (211)
T ss_pred CHH
Confidence 864
No 84
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.8e-28 Score=169.67 Aligned_cols=149 Identities=24% Similarity=0.417 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-----CeEEEEEEEeCCCccccccchhhccccccE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+||+++|++++|||||++++..+.+...+.++.+.++....+.+. ++.+.+.+||++|++.|......+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666653 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCC---------------CCCCCCcEEEEEeCCCCCCCCCchhc-----hhHHh
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASP---------------SDPDNFPFVVLGNKIDVDGGNSRVVC-----IFCDV 143 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~~~ 143 (165)
+|+|||++++.+++.+..|+.++...... ....++|++|||||+|+.++ +.+. .....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence 99999999999999999999999764311 11237899999999999764 2222 23344
Q ss_pred hhhcceeceeeecccc
Q 031126 144 FSSIITLSHTHTHGHT 159 (165)
Q Consensus 144 ~~~~~~i~~~~~s~~~ 159 (165)
+++......++.+++.
T Consensus 159 ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 159 VAEQGNAEEINLNCTN 174 (202)
T ss_pred HHHhcCCceEEEecCC
Confidence 5555555565555543
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=2.4e-28 Score=171.83 Aligned_cols=149 Identities=23% Similarity=0.361 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccc-cccEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL 86 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 86 (165)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 48999999999999999999988876 555555544666777788888899999999999822 3334556 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+....... +.|+|+|+||+|+... +.+. +..+.+.......++++||++|.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~---~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLE---DRPIILVGNKSDLARS--REVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEChhcccc--ceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999998887654322 7899999999999765 3332 33445555556779999999998864
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=3.6e-28 Score=165.00 Aligned_cols=150 Identities=27% Similarity=0.453 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988766666654 334455677888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc----------hh-chhHHhhhhcce-eceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VV-CIFCDVFSSIIT-LSHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~-~~~~~~~~~~~~-i~~~~~ 155 (165)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... .+ .+.++.+..... ..++++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~-----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAP-----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999885 57777765422 7899999999998654211 11 133334433333 368999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||++|.|++
T Consensus 155 Sa~~~~gi~ 163 (174)
T cd04135 155 SALTQKGLK 163 (174)
T ss_pred cCCcCCCHH
Confidence 999999875
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=1.5e-28 Score=165.58 Aligned_cols=149 Identities=26% Similarity=0.372 Sum_probs=114.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhccccccEEEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~ 88 (165)
||+++|++|+|||||++++..+.+...+.++.... ......+++..+.+.+||+||++. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999999887765555554333 345566788888999999999885 3445667889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccccc-CC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNT-HS 163 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~-~~ 163 (165)
|++++.+++.+..|+..+...... ..+.|+++|+||+|+... +.+. +..+.+.......++++|+++|. ++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKR--DREIPVILVGNKADLLHY--RQVSTEEGEKLASELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcCCEEEEeCCCCCchhH
Confidence 999999999999999888775430 127899999999998654 2222 33344444445679999999986 54
No 88
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=1.3e-28 Score=166.47 Aligned_cols=149 Identities=15% Similarity=0.239 Sum_probs=110.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.++|+++|++|+|||||++++..+.+.. +.++.+.+.. .... ..+.+.+||++|++.++..+..+++.+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999998877643 4555555443 2223 34889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-chhchhHHhhhh--cceeceeeeccccccCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVCIFCDVFSS--IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~ 163 (165)
|||++++.++.++..|+..+...... .++|++||+||+|+.+... +++.+.. .+.. .....++++||++|.|+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~i~~~~-~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREM---RDALLLVFANKQDLPDAMKPHEIQEKL-GLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhh---cCCcEEEEEECcCCccCCCHHHHHHHc-CCCccCCCcEEEEEeeCCCCCCh
Confidence 99999999998888877766543211 1689999999999975311 1111111 1111 12345889999999987
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 159 ~ 159 (168)
T cd04149 159 Y 159 (168)
T ss_pred H
Confidence 5
No 89
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=163.31 Aligned_cols=153 Identities=35% Similarity=0.608 Sum_probs=139.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+...+|++++|+.=+|||||+-|+....|......+....+..+.+.+.+....+.+|||.|++.|..+.+.|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45579999999999999999999999999988888888888889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++|||++++.||+....|..++..+... .+-+++||||+||.++ +.+. ..++.+.+.....++++|||+|.++
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhchhheecccccccCH
Confidence 9999999999999999999999988764 6778999999999877 6665 7788889999999999999999764
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=7.3e-28 Score=160.36 Aligned_cols=151 Identities=41% Similarity=0.745 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++++|||||++++.+..+...+.++.+.++........+....+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877788888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++++++.+..|+..+...... ..|+++++||+|+.... ....+..+.+.......++++|+++|.+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPE----NIPIILVGNKIDLEDQR-QVSTEEAQQFAKENGLLFFETSAKTGENVE 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccccccc-cccHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 999999999999999988876532 68999999999996321 222233344444456789999999998764
No 91
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=3.5e-28 Score=163.05 Aligned_cols=146 Identities=17% Similarity=0.296 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|.+++|||||++++..+.+. .+.++.+.+.. .+.. +.+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888775 35566655442 2333 3488999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh--hh--cceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF--SS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~--~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++..+..|+..+...... .+.|+++|+||+|+.+... ..+..+.+ .. .....++++||++|.|+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~ 150 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDEL---RDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCATSGDGLY 150 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHh---cCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence 999999999988877766532211 2689999999999965421 11111111 11 123457799999998864
No 92
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=166.31 Aligned_cols=152 Identities=30% Similarity=0.493 Sum_probs=136.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
...||+++|.+|+|||+|.-+|+...|...+.++.. +.+.+.+.++++.+.+.++|++|++++..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999885 7778888999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||+++++.||+.+..++..+.+..... ++|+++||||+|+... +.+. +..+.++..+.+.++|+||+++.|+.
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~---~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRD---DVPIILVGNKCDLERE--RQVSEEEGKALARSWGCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcC---CCCEEEEEEcccchhc--cccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence 999999999999999999996554433 6899999999999886 5555 66788899999999999999997763
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.5e-27 Score=162.04 Aligned_cols=151 Identities=23% Similarity=0.444 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
.||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999998877777665444 345667788889999999999999888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc----------hh-chhHHhhhhc-ceeceeee
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VV-CIFCDVFSSI-ITLSHTHT 155 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~-~~~~~~~~~~-~~i~~~~~ 155 (165)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+.... .+ ....+.+... ....++++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999998885 57777765432 7899999999998653211 11 1222222222 23468999
Q ss_pred ccccccCCCC
Q 031126 156 HGHTNTHSNQ 165 (165)
Q Consensus 156 s~~~~~~~~~ 165 (165)
||++|.|+++
T Consensus 156 Sa~~~~~v~~ 165 (175)
T cd01870 156 SAKTKEGVRE 165 (175)
T ss_pred ccccCcCHHH
Confidence 9999988753
No 94
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-30 Score=165.92 Aligned_cols=156 Identities=40% Similarity=0.609 Sum_probs=137.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC---------CeEEEEEEEeCCCccccccch
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLG 74 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~ 74 (165)
..+..++++.+|++|+|||||+.++..+.|...-..+.+.++..+.+-++ +..+.+++|||.|++.|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 34567899999999999999999999999988888888888887776542 367889999999999999999
Q ss_pred hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceecee
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHT 153 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~ 153 (165)
..+++.|-+++++||.++..||-++..|+.++.....-. +.-|++++||+||.+. +++. +.+..+.+...++++
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhCCCee
Confidence 999999999999999999999999999999988765532 7779999999999877 6666 677888999999999
Q ss_pred eeccccccCCC
Q 031126 154 HTHGHTNTHSN 164 (165)
Q Consensus 154 ~~s~~~~~~~~ 164 (165)
++||-+|.|+.
T Consensus 160 ETSA~tg~Nv~ 170 (219)
T KOG0081|consen 160 ETSACTGTNVE 170 (219)
T ss_pred eeccccCcCHH
Confidence 99999999874
No 95
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.2e-30 Score=161.24 Aligned_cols=147 Identities=35% Similarity=0.587 Sum_probs=132.3
Q ss_pred EEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeC
Q 031126 12 IILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (165)
Q Consensus 12 ~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 90 (165)
+++|++++|||+|+-|+..+.|-. .-.++.+.++..+.+..++..+++++|||.|++.|++....+++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999988877653 3356788999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 91 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.++.||++++.|+.++.....+ .+.+.+++||||+..+ +.+. +..+.+.+...+++.++|||+|.|++
T Consensus 81 ankasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYGIPFMETSAKTGFNVD 149 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHCCCceeccccccccHh
Confidence 9999999999999999988765 7889999999999776 5555 77888999999999999999999975
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=1.9e-27 Score=159.72 Aligned_cols=151 Identities=27% Similarity=0.461 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++....+...+.++... ........++..+.+.+||+||++.+......+++.++++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 48999999999999999999998887666666543 33455667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++..+..|+..+....... +.|+++|+||+|+.... .........+.......++++|+++|.+..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~---~~piiiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDD---NVPLLLVGNKCDLEDKR-QVSSEEAANLARQWGVPYVETSAKTRQNVE 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEcccccccc-ccCHHHHHHHHHHhCCeEEEeeCCCCCCHH
Confidence 9999999999999999988875422 78999999999997631 112222233333344679999999998864
No 97
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.8e-27 Score=165.89 Aligned_cols=153 Identities=27% Similarity=0.528 Sum_probs=127.9
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 45567999999999999999999999888888888888888877777778888999999999999998888888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|||++++.++..+..|+..+..... +.|+++|+||+|+.+. +. ......+.....+.++++|+++|.++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~--~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR--QV-KARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc--cC-CHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999886643 7899999999998643 22 21222344445667999999999886
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 157 ~ 157 (215)
T PTZ00132 157 E 157 (215)
T ss_pred H
Confidence 5
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1e-27 Score=163.11 Aligned_cols=148 Identities=17% Similarity=0.266 Sum_probs=110.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|+|||||++++..+.+. .+.++.+.+... .... .+.+.+||+||++.++..+..+++.+|++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999877764 345566555432 3333 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh--h--hcceeceeeeccccccC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF--S--SIITLSHTHTHGHTNTH 162 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~--~~~~i~~~~~s~~~~~~ 162 (165)
|+|++++.++++..+|+..+...... .+.|+++|+||+|+.+... ..+..+.+ . ......++++||++|.|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDEL---RDAVILVFANKQDLPDAMK--AAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhh---cCCcEEEEEeCcCcccCCC--HHHHHHHhCccccCCCcEEEEEeeCCCCCC
Confidence 99999999999988888777543211 2689999999999975421 11111111 1 11234567899999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 162 v~ 163 (175)
T smart00177 162 LY 163 (175)
T ss_pred HH
Confidence 64
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.3e-27 Score=164.39 Aligned_cols=151 Identities=26% Similarity=0.405 Sum_probs=118.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|++|+|||||+++|+.+.+...+.++.. +.....+.+.+..+.+.+||++|+..+...+..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988766655553 3445566677777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHH-hhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCD-VFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.+++.+..|+..+....... ++|+++|+||.|+............. .........++++||++|.++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDK---FVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVL 152 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHH
Confidence 999999999999998887765432 78999999999996531111111111 2222334578999999998864
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=1.8e-27 Score=161.02 Aligned_cols=148 Identities=19% Similarity=0.311 Sum_probs=109.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|++++|||||++++....+.. +.++.+.+.. ..... .+.+.+||+||+..++..+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 4555554443 33333 4789999999999999999899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhhh--hcceeceeeeccccccCCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVFS--SIITLSHTHTHGHTNTHSNQ 165 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~ 165 (165)
++++.++.++..|+..+.+.... .+.|+++|+||+|+.+..... .....+... ....+.++++||++|.|+++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKEL---RDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhh---CCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 99999999998888888654222 167999999999996531111 111111111 11134578999999998753
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=1.6e-27 Score=160.63 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=108.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 90 (165)
|+++|++|+|||||+++|.+..+...+.++.+... . .++...+.+.+||++|++.++..+..+++.+|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999887766667765443 2 2334558899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhch-----hHHhhhhcceeceeeecccc
Q 031126 91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCI-----FCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 91 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~i~~~~~s~~~ 159 (165)
+++.++..+..|+..+.... .++|+++|+||+|+... +.+.+ ..+.+.....+.++++||++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAA--RSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCC--CCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 99999999888888775432 28899999999999765 32221 12333333456678888887
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=3e-27 Score=159.49 Aligned_cols=147 Identities=22% Similarity=0.369 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|..+.+...+..+. .+ ......+.+..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998865543322 22 2344455667789999999999888877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchh----HHhhhhcceeceeeeccccccC
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIF----CDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~----~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+..... ..+. .+.+... ..++++||++|.+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 151 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREI--ETCVECSAKTLIN 151 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcc--cEEEEeccccccC
Confidence 999999999975 57776665432 78999999999997653211 1111 2222222 2699999999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 152 v~ 153 (166)
T cd01893 152 VS 153 (166)
T ss_pred HH
Confidence 64
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=4.5e-27 Score=159.02 Aligned_cols=150 Identities=27% Similarity=0.501 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||+++|.++.+...+.++.. +.........+..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988655555553 344455566788899999999999988888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch---------h-chhHHhhhhccee-ceeeec
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV---------V-CIFCDVFSSIITL-SHTHTH 156 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~-~~~~~~~~~~~~i-~~~~~s 156 (165)
|++++.++.... .|+..+..... +.|+++|+||+|+.+..... + ......+...... .++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 999999987764 46666665433 78999999999997764321 1 1233333333333 799999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
+++|.+.+
T Consensus 155 a~~~~gi~ 162 (171)
T cd00157 155 ALTQEGVK 162 (171)
T ss_pred cCCCCCHH
Confidence 99998764
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=4e-27 Score=157.42 Aligned_cols=150 Identities=30% Similarity=0.522 Sum_probs=121.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+|+|++|+|||||++++....+.....++.. +.........+..+.+.+||+||++.+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887666666654 5556666777778899999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.++++++.++..|+..+....... ..|+++|+||+|+.... ....+....+.......++++|+++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDE---DIPIVLVGNKCDLENER-QVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCcccccc-eecHHHHHHHHHHcCCcEEEeccCCCCCHH
Confidence 999999999999998888775532 78999999999998742 222233344444444679999999998864
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=3.1e-27 Score=160.46 Aligned_cols=151 Identities=19% Similarity=0.333 Sum_probs=112.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.+...++|+++|++|+|||||++++....+. ...++.+. ....+.+++ +.+.+||+||++.++..+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3456689999999999999999999977543 33444442 233344443 789999999999988888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeecccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHT 159 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~ 159 (165)
+++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ...+..+.+. ....+.++++||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEER---LAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999999988888777754221 1278999999999997642 2222222221 12355799999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.+..
T Consensus 160 g~gi~ 164 (173)
T cd04154 160 GEGLL 164 (173)
T ss_pred CcCHH
Confidence 98764
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=3e-27 Score=161.60 Aligned_cols=149 Identities=16% Similarity=0.287 Sum_probs=110.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|.++||||||++++..+.+. .+.++.+.+.. .+... .+.+.+||+||++.++..+..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987775 34566655442 23333 488999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh--hc--ceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS--SI--ITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~--~~i~~~~~s~~~~~ 161 (165)
+|||++++.++.++..++..+.... ...+.|++||+||+|+.... ...+..+.+. .. ....++++||++|.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~---~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCH---hhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999999988877666654321 11278999999999997652 2222222221 11 12235689999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
++.
T Consensus 165 gv~ 167 (181)
T PLN00223 165 GLY 167 (181)
T ss_pred CHH
Confidence 864
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=3.9e-27 Score=161.38 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
.++|+++|++|||||||++++..+.+... .++.+.+........ ++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998877543 455544444444433 3466899999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHh---hhhcceeceeeeccccccCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDV---FSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|++++.+++.+..|+..+....... +.|+++|+||+|+.........+.... ........++++||++|.|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQ---GVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcC---CCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999988888888776644322 789999999999975321111111111 11112345789999999886
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 159 ~ 159 (183)
T cd04152 159 Q 159 (183)
T ss_pred H
Confidence 4
No 108
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=3.3e-28 Score=164.56 Aligned_cols=152 Identities=28% Similarity=0.462 Sum_probs=128.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
..+|++++|+.++|||+|+-.+..+.|+..+.++.. +.+...+.++ ++.+.+.+|||.|+++|..+++..+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999996 5556677784 99999999999999999999888999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----------chhchhHHhhhhcc-eece
Q 031126 86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------RVVCIFCDVFSSII-TLSH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~-~i~~ 152 (165)
+||++.++.|++++ ..|+.++.+.++ +.|+||||+|.||+++.. ....+....++... ...+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 99999999999996 579999999986 899999999999985321 11114444554443 3789
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+||||+++.+++
T Consensus 157 ~EcSa~tq~~v~ 168 (198)
T KOG0393|consen 157 LECSALTQKGVK 168 (198)
T ss_pred eeehhhhhCCcH
Confidence 999999988764
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=4.9e-27 Score=160.71 Aligned_cols=148 Identities=17% Similarity=0.281 Sum_probs=109.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.+||+++|++|+|||||++++..+.+.. +.++.+.+.. .+.. ..+.+.+||++|++.++..+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998877754 4556554443 3333 34889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh----cceeceeeeccccccC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS----IITLSHTHTHGHTNTH 162 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~~ 162 (165)
|+|++++.++.....++..+..... ..+.|+++|+||.|+.+..... +....+.. ...+.++++||++|.|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~~~~--~i~~~l~~~~~~~~~~~~~~~Sa~tg~g 165 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDE---LRDAVLLVFANKQDLPNAMSTT--EVTEKLGLHSVRQRNWYIQGCCATTAQG 165 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHh---hcCCCEEEEEeCCCCCCCCCHH--HHHHHhCCCcccCCcEEEEeeeCCCCCC
Confidence 9999999999888777666643211 1268999999999997542111 22222211 1223466899999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 166 v~ 167 (182)
T PTZ00133 166 LY 167 (182)
T ss_pred HH
Confidence 64
No 110
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.3e-26 Score=159.21 Aligned_cols=151 Identities=25% Similarity=0.442 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
.|++|+|++|+|||||++++..+.+.+.+.++....+ ...+..++..+.+.+||++|++.+......++..+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766655554333 345566777888999999999988877777788999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--------chh-chhHHhhhhcce-eceeeecc
Q 031126 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--------RVV-CIFCDVFSSIIT-LSHTHTHG 157 (165)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~-~~~~~~~~~~~~-i~~~~~s~ 157 (165)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+... +.+ .+..+.+..... ..++++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999986 58888876543 789999999999854211 111 133444444443 47999999
Q ss_pred ccccCCCC
Q 031126 158 HTNTHSNQ 165 (165)
Q Consensus 158 ~~~~~~~~ 165 (165)
++|.|+++
T Consensus 156 ~~~~~v~~ 163 (187)
T cd04129 156 LTGEGVDD 163 (187)
T ss_pred CCCCCHHH
Confidence 99998753
No 111
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1.3e-26 Score=158.22 Aligned_cols=150 Identities=29% Similarity=0.437 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
.||+++|++|+|||||++++....+...+.++....+ .......+..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887665555553333 455566777788999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+++..+++.+..|+..+.+..... +.|+++|+||+|+... +... .....+.......++++|+++|.+..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKE---SVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWGAAFLESSARENENVE 152 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEchhhhhc--CccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999888887754322 7899999999999754 2222 22333444445678999999998753
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=5.8e-27 Score=157.17 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=108.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+|+++|++|+|||||+++|....+ ...+.++.+... .... ...+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 344455554332 2222 23478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh--cceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++.....|+..+...... ...++|+++|+||+|+.+............+.. ..+..++++||++|.+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDI-KHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCccc-ccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 999999998888887777553211 112789999999999976422111111111111 124458999999998864
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.7e-26 Score=155.97 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=108.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
+|+++|++|+|||||++++.+. +...+.++.+... ..+... .+.+.+||+||++.++..+..+++.+|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999876 5555666665442 334444 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhH---Hhhh--hcceeceeeecccccc
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFC---DVFS--SIITLSHTHTHGHTNT 161 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~---~~~~--~~~~i~~~~~s~~~~~ 161 (165)
++++.+++++..|+..+...... .++|+++|+||+|+............ +.+. ...+..+..+||++|+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~---~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRV---SGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccc---cCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 99999999998888887654221 27899999999999776322221111 1121 1234568889999983
No 114
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.4e-27 Score=149.20 Aligned_cols=155 Identities=33% Similarity=0.585 Sum_probs=139.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....++.+|+|+-|+|||+|+..|....|....+-+.+.++....+++.++.+++++||+.|++.|+...+++++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34568999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
.++|||++.+.+...+..|+..-..+-.. +..|++++||.|+... +.+. +.++.|.+-..+-+.++|+|+|.|
T Consensus 87 almvyditrrstynhlsswl~dar~ltnp----nt~i~lignkadle~q--rdv~yeeak~faeengl~fle~saktg~n 160 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADLESQ--RDVTYEEAKEFAEENGLMFLEASAKTGQN 160 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCC----ceEEEEecchhhhhhc--ccCcHHHHHHHHhhcCeEEEEecccccCc
Confidence 99999999999999999999887655433 6778999999999776 6665 788899999999999999999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 161 ve 162 (215)
T KOG0097|consen 161 VE 162 (215)
T ss_pred HH
Confidence 63
No 115
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=166.82 Aligned_cols=127 Identities=28% Similarity=0.534 Sum_probs=109.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-------------CeEEEEEEEeCCCcccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-------------DRLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~ 72 (165)
...+||+++|+.|+|||||+++|..+.+...+.++.+.++....+.++ +..+.+.|||++|++.|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 346899999999999999999999999888888888888776666654 2568899999999999999
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCC--------CCCCCcEEEEEeCCCCCCC
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS--------DPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~~ 132 (165)
++..+++.++++|+|||++++.+++.+..|+..+....... ...++|++||+||+||...
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999998764210 1126899999999999654
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.7e-26 Score=154.72 Aligned_cols=148 Identities=21% Similarity=0.325 Sum_probs=108.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
+|+++|++|+|||||+++|..+.+.. ..++.+.+. ...... ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988753 344444332 233332 34789999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-chhchh--HHhhhhcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVCIF--CDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~--~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.++..+..|+..+.+.... .+.|+++|+||+|+..... +.+... .+.+.....+.++++||++|.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHI---KGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhh---cCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChH
Confidence 99999898888888777653221 2789999999999965321 111111 011222234468899999998875
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2.3e-26 Score=156.32 Aligned_cols=148 Identities=22% Similarity=0.310 Sum_probs=110.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..++|+++|++|+|||||++++..+.+.. +.++.+.+.. ....+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999887764 4555554432 33334 4789999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeeccccccC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNTH 162 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~ 162 (165)
|+|++++.++.....++..+..... ..++|+++++||+|+.... ...+..+.+. ......++++||++|.+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~---~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHED---LRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 9999999988887777766654321 1268999999999997632 1112222221 12344689999999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 164 i~ 165 (174)
T cd04153 164 LP 165 (174)
T ss_pred HH
Confidence 64
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=2.8e-26 Score=153.38 Aligned_cols=145 Identities=19% Similarity=0.362 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|.+|||||||++++.+..+. .+.++.+... ....+.. ..+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3344444333 3344443 789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.++.....|+..+...... .+.|+++|+||+|+.... ...+..+.+. ....+.++++|+++|.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEEL---KGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCccc---CCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence 99999999988888877664432 278999999999997652 1222222222 2245679999999998864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=5.2e-26 Score=153.34 Aligned_cols=146 Identities=23% Similarity=0.345 Sum_probs=105.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
||+++|++|+|||||++++..... ...+.++.+.+. ..+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122233333333 3344443 789999999999999888899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh------hcceeceeeecc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS------SIITLSHTHTHG 157 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~i~~~~~s~ 157 (165)
+++|+|++++.++.....|+..+.+.... .+.|+++|+||+|+..... ..+..+.+. ....++++++||
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEAL---EGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhh---cCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCceEEEEeeC
Confidence 99999999988888888887777653322 2789999999999966421 111112221 123567999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.++.
T Consensus 152 ~~g~gv~ 158 (167)
T cd04160 152 LEGTGVR 158 (167)
T ss_pred CCCcCHH
Confidence 9998864
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1.6e-25 Score=149.87 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
||+++|++++|||||++++..+.+.. ..++.+.+.. .... ....+.+||+||++.++..+..+++.++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 3444444332 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeeccccccCCC
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~ 164 (165)
++++.++.....++..+.+.... .+.|+++|+||+|+.+.. ...+....+. ......++++||++|.|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 149 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEEL---KGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhh---cCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHH
Confidence 99988887766666554432211 278999999999997542 1222222221 1122469999999998863
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=2.3e-25 Score=153.28 Aligned_cols=149 Identities=21% Similarity=0.330 Sum_probs=110.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+..+|+++|++|||||||++++..+.+. .+.++.+... ..+.+++ ..+.+||+||+..++..+..+++.+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987763 3444443332 3344444 67899999999998888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh---------------hccee
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS---------------SIITL 150 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~i 150 (165)
+|+|+++..++.....|+..+...... .+.|+++|+||+|+...... .+..+.+. .....
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~---~~~pvivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEEL---ANVPFLILGNKIDLPGAVSE--EELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccc---cCCCEEEEEeCCCCCCCcCH--HHHHHHhCcccccccccccccccCceeE
Confidence 999999998888888888777654322 26899999999999653211 11212111 11345
Q ss_pred ceeeeccccccCCC
Q 031126 151 SHTHTHGHTNTHSN 164 (165)
Q Consensus 151 ~~~~~s~~~~~~~~ 164 (165)
.++++||++|.+++
T Consensus 167 ~~~~~Sa~~~~gv~ 180 (190)
T cd00879 167 EVFMCSVVKRQGYG 180 (190)
T ss_pred EEEEeEecCCCChH
Confidence 68999999998875
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=7.1e-25 Score=149.09 Aligned_cols=152 Identities=26% Similarity=0.430 Sum_probs=114.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+.+..+|+++|+.||||||+++++..+.... ..+|.+.+ ...+.+.+ +.+.+||.+|+..++..|..+++.++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3678999999999999999999998765432 34444433 34445555 7899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhH---Hhhhhcceeceeeecccccc
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFC---DVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~ 161 (165)
|+|+|++++..+.+....+..+..... ..++|+++++||+|+.+.......... ..+....++....+|+++|.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred EEEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 999999999888887766666554322 228899999999999875322222211 12223457789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+.+
T Consensus 163 Gv~ 165 (175)
T PF00025_consen 163 GVD 165 (175)
T ss_dssp THH
T ss_pred CHH
Confidence 754
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=6.2e-25 Score=150.56 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=108.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
++.++|+++|.+|+|||||++++..+.+.. +.++.+.. ...+...+ +.+.+||+||+..++..+..+++.+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 445999999999999999999999876542 23333332 22333343 78999999999999989999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh--h---------hcceeceee
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF--S---------SIITLSHTH 154 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~---------~~~~i~~~~ 154 (165)
+|+|++++.++.....++..+...... .+.|+++|+||+|+....+. .+..+.+ . ......++.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~---~~~piliv~NK~Dl~~~~~~--~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEEL---ATVPFLILGNKIDAPYAASE--DELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhh---cCCCEEEEEeCccccCCCCH--HHHHHHcCCCcccccccccCCceeEEEE
Confidence 999999999888887777766543211 27899999999999654211 1222222 1 123556999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.+..
T Consensus 165 ~Sa~~~~g~~ 174 (184)
T smart00178 165 CSVVRRMGYG 174 (184)
T ss_pred eecccCCChH
Confidence 9999998764
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=1e-24 Score=145.26 Aligned_cols=145 Identities=27% Similarity=0.413 Sum_probs=110.6
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 90 (165)
|+++|++|+|||||++++.+..+...+.++.+.+... ....+ +.+.+||+||++.++..+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999998887777776655542 33333 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeeccccccCCC
Q 031126 91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 91 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~~~~ 164 (165)
+++.++.....|+..+...... .++|+++|+||+|+.+.. ...+..+.+ .....++++++|+++|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSL---EGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhh---cCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 9998888877777766543211 278999999999997652 222111111 12234678999999998764
No 125
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=8.9e-24 Score=140.31 Aligned_cols=150 Identities=23% Similarity=0.492 Sum_probs=119.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987767777777777776677777778899999999999988888888999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 88 YDVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 88 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+|.... .++.... .|...+...... +.|+++++||+|+... .........+.......++++||++|.+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDA--KLKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcc--hhhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 998876 6666654 666666665432 7799999999999765 33334444455555566999999999875
No 126
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=3.3e-24 Score=136.99 Aligned_cols=117 Identities=32% Similarity=0.514 Sum_probs=87.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
||+|+|++|+|||||+++|.+..+. .......+.+..............+.+||++|++.+...+..+++.+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223333444445556667767799999999998888877789999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
||++++.+++.+..++..+....... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 99999999998765544444332210 1789999999998
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=2.7e-24 Score=146.55 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC-------CCCCCCCc------eeeeEEEEE--EEE---CCeEEEEEEEeCCCcccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKAT------IGADFLTKE--VQF---EDRLFTLQIWDTAGQERF 70 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~ 70 (165)
.||+++|++++|||||+++|++.. +...+..+ .+.+..... ..+ ++..+.+.+|||||++.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998742 11111111 112222222 222 556788999999999999
Q ss_pred ccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhhhhcce
Q 031126 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVFSSIIT 149 (165)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (165)
...+..+++.+|++++|+|++++.+......|.... . .++|+++|+||+|+.+..... ..+..+.+. ...
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~ 151 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-------NNLEIIPVINKIDLPSADPERVKQQIEDVLG-LDP 151 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-------cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-CCc
Confidence 999889999999999999999876666665554322 1 177999999999996532111 112222221 111
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
..++++||++|.|++
T Consensus 152 ~~~~~~Sa~~g~gi~ 166 (179)
T cd01890 152 SEAILVSAKTGLGVE 166 (179)
T ss_pred ccEEEeeccCCCCHH
Confidence 248899999998864
No 128
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.5e-26 Score=152.03 Aligned_cols=155 Identities=28% Similarity=0.476 Sum_probs=139.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
....-+|++|+|..++||||+|+++..+-|...+..+++.++....+.+.++.+...+||+.|+++|......++++|.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 34557999999999999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
.++||+.+++.||+...+|+..+..... ++|.++|-||+|+.+.. .....+.+.+......+.+++|+++..|+
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlveds-~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVEDS-QMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHhh-hcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999998876 89999999999998752 33346667777777788999999999887
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 170 ~ 170 (246)
T KOG4252|consen 170 M 170 (246)
T ss_pred H
Confidence 5
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=6e-24 Score=143.40 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc---------hhhccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------GVAFYR 79 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~~~~ 79 (165)
.+|+++|++|+|||||+++|.+..+.....+..+.+........ ....+.+|||||....... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999998764322222222222222222 3478999999997431110 001112
Q ss_pred cccEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 80 GADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
.+|++++|+|++++.++ +....|+..+..... +.|+++|+||+|+... +...+ .+.+.......++++||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-----~~pvilv~NK~Dl~~~--~~~~~-~~~~~~~~~~~~~~~Sa 150 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-----NKPVIVVLNKIDLLTF--EDLSE-IEEEEELEGEEVLKIST 150 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC-----cCCeEEEEEccccCch--hhHHH-HHHhhhhccCceEEEEe
Confidence 36899999999987543 555567776654432 7899999999999764 22222 33344445567999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+..
T Consensus 151 ~~~~gi~ 157 (168)
T cd01897 151 LTEEGVD 157 (168)
T ss_pred cccCCHH
Confidence 9998863
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=5.2e-24 Score=147.16 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (165)
..+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......+..+...+.+||+||++.|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46899999999999999999997 4443221 111223333333344445578999999999999999
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhhh------h
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVFS------S 146 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~------~ 146 (165)
...+++.+|++++|+|+++.. ......++..+... ++|+++|+||+|+....... ..+..+.+. +
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~-------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL-------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc-------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999998742 22222333333221 78999999999997542221 122222221 2
Q ss_pred cceeceeeeccccccCC
Q 031126 147 IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 147 ~~~i~~~~~s~~~~~~~ 163 (165)
..+..++.+||++|.+.
T Consensus 154 ~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 154 QLDFPVLYASAKNGWAS 170 (194)
T ss_pred cCccCEEEeehhccccc
Confidence 23668999999999875
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=6.6e-24 Score=142.43 Aligned_cols=145 Identities=17% Similarity=0.106 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC---CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+.|+++|.+|+|||||+++|.+.. +.....++.+.+.......+.+ ...+.+||+||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998642 2222223333344344444442 358999999999988776677788999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chhchhHHhhhhc--ceeceeeeccc
Q 031126 86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVVCIFCDVFSSI--ITLSHTHTHGH 158 (165)
Q Consensus 86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~--~~i~~~~~s~~ 158 (165)
+|+|+++. .+.+.+ ..+ .... ..|+++|+||+|+..... ....+..+.+... ....++++||+
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred EEEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 99999873 332222 111 1111 348999999999976421 1112333333332 35679999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.|++
T Consensus 150 ~~~~v~ 155 (164)
T cd04171 150 TGEGIE 155 (164)
T ss_pred CCcCHH
Confidence 998864
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.4e-23 Score=141.80 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=98.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhc---ccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD 82 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~~ 82 (165)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+.+ ...+.+||+||... .+.....+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987654211111111222222233333 13789999999632 22222333 34699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc-ceeceeeeccccc
Q 031126 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI-ITLSHTHTHGHTN 160 (165)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 160 (165)
++++|+|++++ .+++.+..|.+.+...... ..++|+++|+||+|+.+. ....+..+.+... ....++.+|++++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDE--EELFELLKELLKELWGKPVFPISALTG 156 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCc--hhhHHHHHHHHhhCCCCCEEEEecCCC
Confidence 99999999998 7888888888888765321 126899999999999765 2333223333222 3567899999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.++.
T Consensus 157 ~gi~ 160 (170)
T cd01898 157 EGLD 160 (170)
T ss_pred CCHH
Confidence 8753
No 133
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.6e-23 Score=146.01 Aligned_cols=153 Identities=35% Similarity=0.541 Sum_probs=119.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.++|+++|++|+|||||+++|..+.+...+.++.+..............+.+.+||++|++.++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888877777666666665578999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch------------hc--hhHHhhhhcceece
Q 031126 88 YDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV------------VC--IFCDVFSSIITLSH 152 (165)
Q Consensus 88 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~------------~~--~~~~~~~~~~~i~~ 152 (165)
+|..+ ..+.+....|...+...... ..|+++|+||+|+....... .. .............+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~----~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPD----DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCC----CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99999 55556678888888777642 68999999999998763211 11 11111121223338
Q ss_pred eeeccc--cccCCC
Q 031126 153 THTHGH--TNTHSN 164 (165)
Q Consensus 153 ~~~s~~--~~~~~~ 164 (165)
+++|++ ++.+++
T Consensus 161 ~~~s~~~~~~~~v~ 174 (219)
T COG1100 161 LETSAKSLTGPNVN 174 (219)
T ss_pred eEeecccCCCcCHH
Confidence 999999 777654
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=3e-23 Score=140.68 Aligned_cols=151 Identities=22% Similarity=0.374 Sum_probs=108.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+..+.++|+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ ..+.+||++|+..+...+..+++.+++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 34557999999999999999999999876532 33444432 23344444 678999999998888888888899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh--hc--ceeceeeecccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS--SI--ITLSHTHTHGHT 159 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~--~~i~~~~~s~~~ 159 (165)
+++|+|+.+..++.....++..+....... ++|+++++||+|+.+. ....+..+.+. .. ....++++||++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLA---GVPVLVFANKQDLATA--APAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhc---CCCEEEEEECCCCccC--CCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 999999999888887777766665432211 7899999999999764 22222222221 11 122467999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.+..
T Consensus 160 ~~gi~ 164 (173)
T cd04155 160 GEGLQ 164 (173)
T ss_pred CCCHH
Confidence 98864
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=2.7e-23 Score=144.62 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=100.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~ 76 (165)
+..++|+|+|++|||||||++++.+..+........+.+.....+.+.+. ..+.+||+||.... .... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999988754332223333333444444442 37889999996321 1111 2
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
.+..+|++++|+|++++.+......|...+...... ++|+++|+||+|+.+. .... .. .......++++|
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~----~~~viiV~NK~Dl~~~--~~~~---~~-~~~~~~~~~~~S 186 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE----DIPMILVLNKIDLLDD--EELE---ER-LEAGRPDAVFIS 186 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC----CCCEEEEEEccccCCh--HHHH---HH-hhcCCCceEEEE
Confidence 356799999999999988887777777666544322 6899999999999765 2222 11 222345689999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
|++|.|..
T Consensus 187 a~~~~gi~ 194 (204)
T cd01878 187 AKTGEGLD 194 (204)
T ss_pred cCCCCCHH
Confidence 99998864
No 136
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=137.39 Aligned_cols=150 Identities=24% Similarity=0.371 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+.+.++|..++|||||+|.+..+++.+...++.+.+.. ++....+.+.+||.+|+..|+..|..|++.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 478999999999999999999999998888888875554 4445568999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc--ceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI--ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~~ 164 (165)
+|+.+++.+....+ ++..++.......+|++++|||.|++..-..+.-.+.-.+.++ ..++|+..|+|+..|.+
T Consensus 96 VDaad~~k~~~sr~---EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 96 VDAADPDKLEASRS---ELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred eecCCcccchhhHH---HHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 99999877665544 4444444444448999999999999987544433333334333 67899999999998865
No 137
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.90 E-value=1.3e-22 Score=131.51 Aligned_cols=151 Identities=21% Similarity=0.364 Sum_probs=113.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+.+.++|+|+|..|+||||++++|.+... +...++.+ +..++..+++ +.+.+||..|+...+..|..||+++|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 45589999999999999999999987763 33344444 4445555555 8999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhch---hHHhhhhcceeceeeecccccc
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCI---FCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
|+|+|++++.++++....+..+... .+....|+++++||.|+...-+..... ..+.+...-..+.+-|||.+|.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~e---erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVE---ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhh---hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 9999999999998876655555442 222368999999999998543222222 2223334455678889998886
Q ss_pred CC
Q 031126 162 HS 163 (165)
Q Consensus 162 ~~ 163 (165)
+.
T Consensus 165 ~l 166 (185)
T KOG0073|consen 165 DL 166 (185)
T ss_pred cH
Confidence 53
No 138
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=1.1e-22 Score=138.34 Aligned_cols=129 Identities=29% Similarity=0.519 Sum_probs=105.5
Q ss_pred CCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHc
Q 031126 31 KKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA 110 (165)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (165)
+.|.+.+.++.+.++....+.++++.+.+.+||++|++.++..+..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667778888888888888889999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 111 SPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 111 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.. +.|++||+||+|+.... ....+....+.......++++||++|.|++
T Consensus 83 ~~----~~piilVgNK~DL~~~~-~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~ 131 (176)
T PTZ00099 83 GK----DVIIALVGNKTDLGDLR-KVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131 (176)
T ss_pred CC----CCeEEEEEECccccccc-CCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 21 78999999999997531 122233344444455678999999999875
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=8.3e-23 Score=137.69 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
.|+|+|++|+|||||+++|....+......+.+.+......... +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765444344333333333332 13467899999999988888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh------cceeceeeeccccccC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS------IITLSHTHTHGHTNTH 162 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~~ 162 (165)
|+++........ .+..+... ++|+++|+||+|+..............+.. .....++++|+++|.+
T Consensus 82 d~~~~~~~~~~~-~~~~~~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKAA-------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred ECCCCccHHHHH-HHHHHHHc-------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 998753222211 11222211 789999999999975422222211111111 1235789999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
..
T Consensus 154 i~ 155 (168)
T cd01887 154 ID 155 (168)
T ss_pred HH
Confidence 53
No 140
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.9e-23 Score=135.78 Aligned_cols=151 Identities=25% Similarity=0.490 Sum_probs=133.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+...++++++|+.|.|||+++++.+.++|...+.++.+.....-....+...+.+..||+.|++.+.....-++-++.++
T Consensus 7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 34689999999999999999999999999999999998888776665555569999999999999999999888889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+|.||++++.+..+..+|...+.+.+. ++||+++|||.|.... ++....-.+....++++++.|++.|+|-
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r---~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKAR---KVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceecccc---ccccccceeeecccceeEEeeccccccc
Confidence 999999999999999999999999987 8999999999999653 3455556667778889999999999874
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.89 E-value=3.4e-23 Score=136.20 Aligned_cols=127 Identities=21% Similarity=0.219 Sum_probs=84.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhccccccEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC 84 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 84 (165)
||+++|++|+|||||+++|.+..+. +.++.+ ..+.. .+||+||.. .+..... .++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999977642 222221 12222 689999972 3333333 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc-eeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII-TLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~~~ 163 (165)
++|||++++.++.. ..|... . ..|+++|+||+|+.+. ....+..+.+.+.. ...++++||++|.++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~----~------~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI----F------VKPVIGLVTKIDLAEA--DVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh----c------cCCeEEEEEeeccCCc--ccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99999999888754 233321 1 3499999999999653 11112222222222 236899999999876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 134 ~ 134 (142)
T TIGR02528 134 E 134 (142)
T ss_pred H
Confidence 4
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.89 E-value=8.3e-22 Score=129.64 Aligned_cols=147 Identities=39% Similarity=0.686 Sum_probs=110.1
Q ss_pred EEcCCCCChHHHHHHHhcCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCC
Q 031126 13 ILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
++|++|+|||||++++..... .....++. .+..............+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 33334444 6666666666667789999999999888887788889999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++.+......|.......... .+.|+++|+||+|+......................++++|++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 80 DRESFENVKEWLLLILINKEG---ENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhcc---CCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 999988887763222222221 188999999999997653222222134445556678999999988764
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=1.7e-22 Score=134.86 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=95.6
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhcc--ccccEE
Q 031126 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCC 84 (165)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~ 84 (165)
++|.+|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||+..+... ...++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444444444555555566665 57899999998776643 34445 489999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|+|+++..... .+...+... ++|+++|+||+|+.+. .......+.+.......++++|+++|.+..
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEK--RGIKIDLDKLSELLGVPVVPTSARKGEGID 146 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccc--ccchhhHHHHHHhhCCCeEEEEccCCCCHH
Confidence 9999999864432 333333221 7899999999999765 222222334444455679999999988753
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=3.7e-22 Score=147.55 Aligned_cols=153 Identities=14% Similarity=0.053 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccc---hhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSL---GVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~---~~~~~~~ 80 (165)
...|.|+|.|++|||||++++..........+.++.......+.+. ....+.+||+||..+ ...+ ....++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4679999999999999999999876543333444444444445442 224689999999532 1122 2234568
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
++++++|+|+++..+++.+..|..++...... ..++|+++|+||+|+.+.. .......+.+.......++.+||+++
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~~-~~~~~~~~~~~~~~~~~i~~iSAktg 313 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDEE-EEREKRAALELAALGGPVFLISAVTG 313 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCch-hHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 99999999999887888888898888765321 1268999999999997542 11112222222333457899999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.++.
T Consensus 314 ~GI~ 317 (335)
T PRK12299 314 EGLD 317 (335)
T ss_pred CCHH
Confidence 8764
No 145
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=8e-22 Score=134.58 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=93.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG 74 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 74 (165)
+....+|+|+|++|+|||||++++.+..+......+.+.+........++ .+.+||+||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46678999999999999999999998764333333333222222222232 58999999942 233333
Q ss_pred hhccc---cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc--hhchhHHhhhhc-c
Q 031126 75 VAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVCIFCDVFSSI-I 148 (165)
Q Consensus 75 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~-~ 148 (165)
..+++ .++++++|+|++++.+..+.. ++..+... +.|+++|+||+|+...... ...+..+.+... .
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~-------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER-------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc-------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 34444 358999999998765554442 22222211 7899999999999754211 122333333332 2
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
..+++.+||++|.|+.
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3479999999999863
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=4.2e-22 Score=148.26 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=100.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 77 (165)
..++|+++|.+|+|||||+|+|.+........++.+.+.....+.+.+. ..+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999988754333334445555666666322 478899999962 222222 24
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
+..+|++++|+|++++.+.+.+..|...+...... ++|+++|+||+|+.+. ....... .. ...++.+||
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~----~~piIlV~NK~Dl~~~--~~v~~~~---~~--~~~~i~iSA 334 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAE----DIPQLLVYNKIDLLDE--PRIERLE---EG--YPEAVFVSA 334 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC----CCCEEEEEEeecCCCh--HhHHHHH---hC--CCCEEEEEc
Confidence 67899999999999988877776666555443221 6799999999999753 2222111 11 124789999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+..
T Consensus 335 ktg~GI~ 341 (351)
T TIGR03156 335 KTGEGLD 341 (351)
T ss_pred cCCCCHH
Confidence 9998753
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=6.6e-22 Score=146.04 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccchhh---cccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVA---FYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~---~~~~ 80 (165)
...|+|+|.|++|||||++++..........+.++.......+.+++ ...+.+||+||.... ..+... .++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 57899999999999999999998764333233333333333344432 357899999996421 122223 3457
Q ss_pred ccEEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 81 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++++++|+|+++. .+++.+..|..++...... ..++|+++|+||+|+... ....+..+.+.+.....++.+||
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSA 311 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISA 311 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEc
Confidence 9999999999976 6777777887777654321 126899999999999765 33444555555444567899999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
+++.++.
T Consensus 312 ktg~GI~ 318 (329)
T TIGR02729 312 LTGEGLD 318 (329)
T ss_pred cCCcCHH
Confidence 9998754
No 148
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=6.1e-22 Score=155.99 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=102.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC-------CCCCCCC------ceeeeEEE--EEEEE---CCeEEEEEEEeCCCcc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKA------TIGADFLT--KEVQF---EDRLFTLQIWDTAGQE 68 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~--~~~~~---~~~~~~~~~~D~~g~~ 68 (165)
...||+|+|+.++|||||+++|+... +...+.. ..+.++.. ..+.+ ++..+.+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46899999999999999999998742 1111111 11223322 22222 4567899999999999
Q ss_pred ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc
Q 031126 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII 148 (165)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (165)
+|...+..+++.+|++|+|+|+++..+.+....|...+. . ++|+++|+||+|+........ .+.+.+..
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~-----~ipiIiViNKiDl~~~~~~~~---~~el~~~l 150 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N-----DLEIIPVINKIDLPSADPERV---KKEIEEVI 150 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c-----CCCEEEEEECcCCCccCHHHH---HHHHHHHh
Confidence 999999999999999999999998777766666554332 1 779999999999975421111 12222222
Q ss_pred ee---ceeeeccccccCCC
Q 031126 149 TL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i---~~~~~s~~~~~~~~ 164 (165)
.. .++.+||++|.|+.
T Consensus 151 g~~~~~vi~vSAktG~GI~ 169 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIE 169 (595)
T ss_pred CCCcceEEEeeccCCCCHH
Confidence 22 37899999998864
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=1.5e-22 Score=133.73 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhcc--cc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RG 80 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~ 80 (165)
++|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||....... ...++ +.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999886555556666677777777777 56778899995433322 22233 67
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
.|++++|+|++..+.-- ....++... ++|+++|.||+|+... +......+.+++...++.+..||+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~-------g~P~vvvlN~~D~a~~--~g~~id~~~Ls~~Lg~pvi~~sa~~~ 146 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL-------GIPVVVVLNKMDEAER--KGIEIDAEKLSERLGVPVIPVSARTG 146 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT-------TSSEEEEEETHHHHHH--TTEEE-HHHHHHHHTS-EEEEBTTTT
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc-------CCCEEEEEeCHHHHHH--cCCEECHHHHHHHhCCCEEEEEeCCC
Confidence 99999999999754322 233344333 8899999999999876 55555677788888899999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+.+
T Consensus 147 ~g~~ 150 (156)
T PF02421_consen 147 EGID 150 (156)
T ss_dssp BTHH
T ss_pred cCHH
Confidence 8753
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=1.6e-21 Score=135.57 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=90.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc-cEEEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY 88 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 88 (165)
+|+++|++++|||||+++|..+.+.....++ ..+.........+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776554333 2222222222223456799999999999998888889998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 89 DVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 89 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
|+.+. .++.....|+..+...... ....+|+++|+||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence 99987 6777777766665443221 1127899999999999764
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=1.4e-21 Score=141.36 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 80 (165)
+|+++|.+|+|||||+|+|.+......+. +.++.+........++ ..+.+|||||...... .....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643222 2122222222222222 4689999999654321 12345688
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhccee-ceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITL-SHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~ 159 (165)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+... .........+...... .++.+||++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~-------~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNL-------KRPVVLTRNKLDNKFK--DKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhc-------CCCEEEEEECeeCCCH--HHHHHHHHHHHhhcCCCceEEEecCC
Confidence 99999999999876554 2333333221 7899999999999643 3333233333333222 689999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|.+
T Consensus 149 g~gi~ 153 (270)
T TIGR00436 149 GDNTS 153 (270)
T ss_pred CCCHH
Confidence 98764
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.7e-21 Score=150.59 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=101.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccch-
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG- 74 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~- 74 (165)
..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++. .+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 233444555555566666664 46799999952 222221
Q ss_pred hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-h-chhHHhhhhcceece
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-V-CIFCDVFSSIITLSH 152 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~-~~~~~~~~~~~~i~~ 152 (165)
..+++.+|++++|+|++++.++..+. ++..+... ++|+|+|+||+|+.+..... . .+..+.+.......+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~-------~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA-------GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc-------CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 23568899999999999988777653 33333221 78999999999997532111 1 122233333333568
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.|+.
T Consensus 360 ~~~SAk~g~gv~ 371 (472)
T PRK03003 360 VNISAKTGRAVD 371 (472)
T ss_pred EEEECCCCCCHH
Confidence 999999999864
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.7e-21 Score=149.51 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=95.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 77 (165)
...+|+|+|.+|+|||||+|+|++.... ....+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4578999999999999999999987643 22334444555555555555 4588999999652 33344556
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++|+|+|++++.+... ..+...+... ++|+++|+||+|+....... .+.+..-.. ..+++||
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~-------~~piilV~NK~Dl~~~~~~~----~~~~~~g~~-~~~~iSA 181 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRRS-------GKPVILAANKVDDERGEADA----AALWSLGLG-EPHPVSA 181 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc-------CCCEEEEEECccCCccchhh----HHHHhcCCC-CeEEEEc
Confidence 789999999999998765542 2333333321 78999999999996532111 111111111 2368999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+++
T Consensus 182 ~~g~gi~ 188 (472)
T PRK03003 182 LHGRGVG 188 (472)
T ss_pred CCCCCcH
Confidence 9998875
No 154
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.5e-21 Score=129.30 Aligned_cols=121 Identities=21% Similarity=0.467 Sum_probs=99.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
....+|+++|..++||||++.++..++.... .||.+.+. .++.+.+ +.|.+||..|++.++..|..|++..+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4568999999999999999999999887655 66666544 4444444 89999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 134 (165)
||+|.++++.+.+..+.+..+. ......+.|+++++||.|++..-+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhccccCC
Confidence 9999999998888765444444 333344899999999999988643
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=4.3e-21 Score=146.60 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=96.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VA 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 76 (165)
...++|+++|++|+|||||+|+|.+.... ....++++.+.....+.+++ ..+.+|||||...+.... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987542 22334445666666777776 567899999986544322 34
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
+++.+|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+... . . +.+.+.....++.+|
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--~-~----~~~~~~~~~~~~~vS 342 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--S-L----EFFVSSKVLNSSNLS 342 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--c-h----hhhhhhcCCceEEEE
Confidence 67889999999999988877654 5554432 17799999999999643 1 1 122223334567888
Q ss_pred ccc
Q 031126 157 GHT 159 (165)
Q Consensus 157 ~~~ 159 (165)
+++
T Consensus 343 ak~ 345 (442)
T TIGR00450 343 AKQ 345 (442)
T ss_pred Eec
Confidence 886
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=5.6e-22 Score=137.63 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=89.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSL 73 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~ 73 (165)
+...++|+++|.+|+|||||+++|.+..+.....++.+ ......... .+.+||+|| ++.++..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34678999999999999999999998876544444333 222333322 589999999 4556555
Q ss_pred hhhccc----cccEEEEEEeCCChhhHHHHHHHH--------HHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhH
Q 031126 74 GVAFYR----GADCCVLVYDVNSMKSFDNLNNWR--------EEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFC 141 (165)
Q Consensus 74 ~~~~~~----~~~~~i~v~d~~~~~s~~~~~~~~--------~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 141 (165)
+..++. .++++++|+|.++..... ..|. ..+....... ++|+++|+||+|+.+.......+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~ 154 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLREL---GIPPIVAVNKMDKIKNRDEVLDEIA 154 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHc---CCCeEEEEECccccCcHHHHHHHHH
Confidence 555543 457888888876532210 1110 1111111111 7899999999999654211222333
Q ss_pred Hhhhh--c---ceeceeeeccccccCCC
Q 031126 142 DVFSS--I---ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 142 ~~~~~--~---~~i~~~~~s~~~~~~~~ 164 (165)
+.+.. . +...++++||++| |++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~ 181 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIE 181 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHH
Confidence 33321 0 0124789999999 764
No 157
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=5.6e-21 Score=150.03 Aligned_cols=150 Identities=22% Similarity=0.176 Sum_probs=103.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+..+|+++|++++|||||+++|....+........+.+.....+...+. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45689999999999999999999988776554444444444444444332 27899999999999999888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh---hcc--eeceeeeccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS---SII--TLSHTHTHGHTN 160 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~--~i~~~~~s~~~~ 160 (165)
+|+|+++....+....+ ..... .++|+++++||+|+...+..........+. ..+ ...++++||++|
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~~-------~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAKA-------ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHHH-------cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 99999874322222211 11111 178999999999997543222222222111 111 246899999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.|.+
T Consensus 236 eGI~ 239 (587)
T TIGR00487 236 DGID 239 (587)
T ss_pred CChH
Confidence 8864
No 158
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1e-20 Score=127.78 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LGV 75 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~ 75 (165)
.++|+++|.+|+|||||++++.+..... ...+..+.......+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999876431 1122222333334444455 3578999999643311 112
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh----cceec
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS----IITLS 151 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~i~ 151 (165)
..+..+|++++|+|+.++.+.... .+...+... +.|+++++||+|+.+..........+.+.+ .....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~-------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE-------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc-------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence 345789999999999988665443 222222211 679999999999976521222222222222 22467
Q ss_pred eeeeccccccCCC
Q 031126 152 HTHTHGHTNTHSN 164 (165)
Q Consensus 152 ~~~~s~~~~~~~~ 164 (165)
++.+|++++.+.+
T Consensus 152 ~~~~Sa~~~~~i~ 164 (174)
T cd01895 152 IVFISALTGQGVD 164 (174)
T ss_pred eEEEeccCCCCHH
Confidence 9999999998764
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=1.6e-20 Score=124.87 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYR 79 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 79 (165)
++|+++|++|+|||||++++....... ...+..+.+.........+ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 2223333344444444444 57899999997655422 223567
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.+|++++|+|++++.+......+.. .. +.|+++|+||+|+...... ........++++|+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~-----~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PA-----DKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hc-----CCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCC
Confidence 8999999999998777766544332 11 7899999999999865322 2333455799999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
+.+..
T Consensus 142 ~~~v~ 146 (157)
T cd04164 142 GEGLD 146 (157)
T ss_pred CCCHH
Confidence 98753
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=4.3e-21 Score=130.18 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=95.0
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccch---hhccccccEEE
Q 031126 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLG---VAFYRGADCCV 85 (165)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~i 85 (165)
++|++|+|||||++++.+........+..+.+.......+++ ...+.+||+||... .+... ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222222222233333441 35789999999632 12221 23467899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHHHcCCC---CCCCCcEEEEEeCCCCCCCCCchhchh-HHhhhhcceeceeee
Q 031126 86 LVYDVNSM------KSFDNLNNWREEFLIQASPS---DPDNFPFVVLGNKIDVDGGNSRVVCIF-CDVFSSIITLSHTHT 155 (165)
Q Consensus 86 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~i~~~~~ 155 (165)
+|+|+.++ .++.....|...+....... ...+.|+++|+||+|+... ...... ...........++.+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEE
Confidence 99999987 46777777777765442210 0017899999999999765 222221 222333345568999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
|++++.+.+
T Consensus 158 Sa~~~~gl~ 166 (176)
T cd01881 158 SAKTEEGLD 166 (176)
T ss_pred ehhhhcCHH
Confidence 999988753
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=6.9e-21 Score=131.35 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC----C---CCCCCCceeeeEEEEEEEE------------CCeEEEEEEEeCCCccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK----F---SNQYKATIGADFLTKEVQF------------EDRLFTLQIWDTAGQER 69 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~g~~~ 69 (165)
+||+++|++++|||||+++|.... + .....+..+.+.......+ .++...+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1 1111111222222222222 23357899999999876
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch--hchhHHhhhh-
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV--VCIFCDVFSS- 146 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~- 146 (165)
+..........+|++++|+|+.+.........+. +.... +.|+++|+||+|+....... ..+..+.+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 5444444456789999999998754443332222 11111 56999999999997532111 1122222211
Q ss_pred -----cceeceeeeccccccCCC
Q 031126 147 -----IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 147 -----~~~i~~~~~s~~~~~~~~ 164 (165)
...++++.+||++|.|..
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~ 175 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEA 175 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHH
Confidence 245679999999998763
No 162
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.5e-20 Score=151.01 Aligned_cols=150 Identities=19% Similarity=0.148 Sum_probs=102.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+...|+|+|+.++|||||+++|....+........+.+.....+..++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 35678999999999999999999988776544434443444444444444 6789999999999999988888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHh---hhhcc--eeceeeecccc
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDV---FSSII--TLSHTHTHGHT 159 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~--~i~~~~~s~~~ 159 (165)
|+|+|+++....+....| ..... .++|+|+++||+|+...+...+...... +.+.+ .+.++.+||++
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~----~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKA----AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHh----cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 999999874322222111 11111 1789999999999975432222211111 11111 25799999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 437 G~GI~ 441 (787)
T PRK05306 437 GEGID 441 (787)
T ss_pred CCCch
Confidence 99875
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=7.8e-21 Score=145.81 Aligned_cols=137 Identities=23% Similarity=0.250 Sum_probs=98.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (165)
..++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 23334444566666666666 56899999998654432 2235
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++++|+|++++.+++....|.. . .+.|+++|+||+|+.... ... ......++.+|+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-----~-----~~~piiiV~NK~DL~~~~--~~~-------~~~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-----L-----KDKPVIVVLNKADLTGEI--DLE-------EENGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-----c-----CCCCcEEEEEhhhccccc--hhh-------hccCCceEEEEe
Confidence 788999999999998877765443332 1 178999999999997542 111 222345788999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+.+
T Consensus 353 ktg~GI~ 359 (449)
T PRK05291 353 KTGEGID 359 (449)
T ss_pred eCCCCHH
Confidence 9987753
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=1.1e-20 Score=129.44 Aligned_cols=145 Identities=19% Similarity=0.113 Sum_probs=97.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCC----------------ceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (165)
+|+++|.+|+|||||++++........... ..+........... ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998766543211 11122222223333 367999999999988888
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch--hchhHHhhhh-----
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV--VCIFCDVFSS----- 146 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~----- 146 (165)
+..++..+|++++|+|+.++.+.... .++..+.. .+.|+++|+||+|+....... .....+.+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 88889999999999999876544322 23333322 178999999999997631111 1122222221
Q ss_pred --------cceeceeeeccccccCCC
Q 031126 147 --------IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 147 --------~~~i~~~~~s~~~~~~~~ 164 (165)
....+++++||++|.+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~ 176 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVE 176 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHH
Confidence 235778999999998754
No 165
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.9e-20 Score=139.08 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=91.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEEeCCCcccc-ccch-------hh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLG-------VA 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~-------~~ 76 (165)
++..+|+++|.+|+|||||+|+|.+..+..... +..+.+.....+..++ ..+.+|||||.... .... ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887642211 1122233334444455 56899999997432 2221 12
Q ss_pred ccccccEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc-eeceee
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII-TLSHTH 154 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~i~~~~ 154 (165)
.+..+|++++|+|..+. +..... |+..+... +.|.++|+||+|+.+. . ..+..+.+.... ...++.
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~--~-~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL-------NIVPIFLLNKIDIESK--Y-LNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc--c-HHHHHHHHHhcCCCcEEEE
Confidence 36789999999997653 333333 33333322 5577899999999643 2 222223332222 245899
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.|.+
T Consensus 196 iSAktg~gv~ 205 (339)
T PRK15494 196 ISALSGKNID 205 (339)
T ss_pred EeccCccCHH
Confidence 9999998753
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.7e-20 Score=141.43 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=98.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch----------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG---------- 74 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 74 (165)
...++|+++|.+++|||||+++|++.+.. ....+..+.+.....+..++ ..+.+|||||...+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34589999999999999999999987643 22223333444444555555 368899999975443321
Q ss_pred -hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchh----HHhhhhcce
Q 031126 75 -VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIF----CDVFSSIIT 149 (165)
Q Consensus 75 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~----~~~~~~~~~ 149 (165)
...++.+|++++|+|++++.+..... ++..+... +.|+++|+||+|+.+. .....+. ...+.....
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~-------~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 318 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA-------GKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDF 318 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc-------CCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCC
Confidence 23578899999999999877766542 22222221 6899999999999732 1222222 222333344
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
++++++||++|.|++
T Consensus 319 ~~vi~~SA~~g~~v~ 333 (429)
T TIGR03594 319 APIVFISALTGQGVD 333 (429)
T ss_pred CceEEEeCCCCCCHH
Confidence 689999999998864
No 167
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=2.3e-20 Score=147.25 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=100.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCC--CC-----CC------CCceeeeEE--EEEEEE---CCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--SN-----QY------KATIGADFL--TKEVQF---EDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-----~~------~~~~~~~~~--~~~~~~---~~~~~~~~~~D~~g 66 (165)
.....|++|+|+.++|||||+++|+...- .. .. ....+.+.. ...+.+ +++.+.+.+|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 34678999999999999999999986321 00 00 001112222 122222 45678999999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS 146 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (165)
+.+|...+..++..+|++|+|+|+++....+....|..... .+.|+++|+||+|+........ .+.+.+
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~~~v---~~ei~~ 152 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAADPERV---KQEIED 152 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccHHHH---HHHHHH
Confidence 99999999999999999999999998766655555543321 1779999999999965422211 122222
Q ss_pred ccee---ceeeeccccccCCC
Q 031126 147 IITL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 147 ~~~i---~~~~~s~~~~~~~~ 164 (165)
...+ .++.+||++|.++.
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~ 173 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIE 173 (600)
T ss_pred HhCCCcceEEEEecCCCCCHH
Confidence 2222 37899999998763
No 168
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=5.3e-20 Score=144.95 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC---CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+.|+++|++++|||||+++|.+.. ++....++.+.+.....+..++ ..+.+||+||++.|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999998633 3333444555666555566655 78999999999999988888889999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCc-hhchhHHhh-hhc---ceeceeeec
Q 031126 86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVCIFCDVF-SSI---ITLSHTHTH 156 (165)
Q Consensus 86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~~~~~~~-~~~---~~i~~~~~s 156 (165)
+|+|+++. .+.+.+ ..+ ... ++| +++|+||+|+.+.... ...+..+.+ ... ...+++.+|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il-~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVL-DLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHH-HHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999973 333332 111 111 667 9999999999764211 111222222 221 146799999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
|++|.|..
T Consensus 148 A~tG~GI~ 155 (581)
T TIGR00475 148 AKTGQGIG 155 (581)
T ss_pred CCCCCCch
Confidence 99998864
No 169
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.84 E-value=5.9e-21 Score=122.96 Aligned_cols=154 Identities=21% Similarity=0.420 Sum_probs=133.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.-.++|.++|++..|||||+-.+..+++.+.+..+.+.++..+++.+.+..+.+.+||..|++++....+...+++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34689999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC----CCCchhchhHHhhhhcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG----GNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
+.||.+++.++..+.+|+.+-.....- .+| |+||+|.|+.- +.++.+...+..+++....+.+.||+.-++
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 999999999999999999987655432 456 78999999743 323445577788888889999999999888
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|+|
T Consensus 173 Nv~ 175 (205)
T KOG1673|consen 173 NVQ 175 (205)
T ss_pred cHH
Confidence 875
No 170
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=2.4e-20 Score=148.81 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceee--eEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.+..+|+|+|++++|||||+++|....+........+. ..+.......+....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 46689999999999999999999987765433332322 2223333333455789999999999999999889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh---hhcc--eeceeeeccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF---SSII--TLSHTHTHGH 158 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~i~~~~~s~~ 158 (165)
+|+|+|+++....+....+ ..+.. .++|+|+|+||+|+...+...+......+ .+.+ .++++.+||+
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k~-------~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQA-------ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHHh-------cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 9999999875333222221 11111 17899999999999764322222111111 1111 2568999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.+..
T Consensus 394 tG~GId 399 (742)
T CHL00189 394 QGTNID 399 (742)
T ss_pred CCCCHH
Confidence 998763
No 171
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.84 E-value=6.4e-21 Score=145.04 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=120.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....+||+++|+.|+||||||-.++..++.+.-++-.. ..........+.+...+.|++..++-+......+++||++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 34569999999999999999999999988755433221 1122233334446688889997777666767889999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc----hhchhHHhhhhcceeceeeecccc
Q 031126 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----VVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
+++|+++++.+.+.++ .|++.+++.... -.++|||+||||+|....... .....++.+.++.. |++|||++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt--ciecSA~~ 159 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET--CIECSALT 159 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH--HHhhhhhh
Confidence 9999999999999986 488888776622 128999999999999886544 34588899999987 99999999
Q ss_pred ccCCCC
Q 031126 160 NTHSNQ 165 (165)
Q Consensus 160 ~~~~~~ 165 (165)
-.|+++
T Consensus 160 ~~n~~e 165 (625)
T KOG1707|consen 160 LANVSE 165 (625)
T ss_pred hhhhHh
Confidence 888764
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.6e-20 Score=123.30 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=88.8
Q ss_pred EEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccccc
Q 031126 12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD 82 (165)
Q Consensus 12 ~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 82 (165)
+++|.+|+|||||++++...... ....+..+.+.........+ ..+.+||+||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976521 11122223334444444444 6789999999877544 3334568899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|+|..++.+.... .+...+... +.|+++|+||+|+... .... ..+.......++++|+++|.+
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~-------~~piiiv~nK~D~~~~--~~~~---~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS-------KKPVILVVNKVDNIKE--EDEA---AEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc-------CCCEEEEEECcccCCh--HHHH---HHHHhcCCCCeEEEecccCCC
Confidence 99999999876544332 112222211 6899999999999775 2221 122222112578999999887
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
+.
T Consensus 146 v~ 147 (157)
T cd01894 146 IG 147 (157)
T ss_pred HH
Confidence 53
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=3.8e-20 Score=141.99 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=98.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccc---hhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSL---GVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~---~~~~~~~ 80 (165)
...|+|+|.|++|||||+++|..........+.++.......+.+.+ ..+.+||+||... ...+ ....++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 57899999999999999999998765433334444444445555555 5799999999421 1111 1234578
Q ss_pred ccEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCC-------CCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcc
Q 031126 81 ADCCVLVYDVNSM----KSFDNLNNWREEFLIQASP-------SDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSII 148 (165)
Q Consensus 81 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~-------~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~ 148 (165)
++++++|+|+++. ..+..+..+..++...... ....+.|+|+|+||+|+.+. +... .....+.. .
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~~~l~~-~ 313 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVRPELEA-R 313 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHHHHHHH-c
Confidence 9999999999753 3445555555555544321 01126899999999999754 2222 22222322 2
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
...++.+||+++.+.+
T Consensus 314 g~~Vf~ISA~tgeGLd 329 (500)
T PRK12296 314 GWPVFEVSAASREGLR 329 (500)
T ss_pred CCeEEEEECCCCCCHH
Confidence 4568999999988753
No 174
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=4.5e-20 Score=141.25 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=98.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC--CCCC-----------------------------CCCCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--KFSN-----------------------------QYKATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 52 (165)
.....++|+++|+.++|||||+++|+.. .... ...+..+.+.....+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~-- 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF-- 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--
Confidence 4667899999999999999999999852 1110 011233334433333
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
......+.+||+||++.|.......+..+|++++|+|++++++....+. +...+..... ..|+++|+||+|+.+
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVN 155 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccC
Confidence 3444789999999999887777777889999999999998754321111 1112222221 357999999999975
Q ss_pred CCCchh---chhHHhh-hhc----ceeceeeeccccccCCC
Q 031126 132 GNSRVV---CIFCDVF-SSI----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 132 ~~~~~~---~~~~~~~-~~~----~~i~~~~~s~~~~~~~~ 164 (165)
...... ....+.+ ... ..+.++++||++|.|+.
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~ 196 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVI 196 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccc
Confidence 321211 1122222 211 23678999999998864
No 175
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=3.9e-20 Score=140.72 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=95.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc--ccch------hhccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLG------VAFYR 79 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~------~~~~~ 79 (165)
..+|+++|.+|+|||||+|+|.+........++.+.+.....+...+. ..+.+|||+|.... ...+ ...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987755333334444555555555442 25789999996321 1112 22357
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceec-eeeeccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLS-HTHTHGH 158 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~ 158 (165)
.+|++++|+|++++.+.+.+..|...+...... ++|+++|+||+|+.+........ . . .... ++.+||+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~----~~pvIiV~NKiDL~~~~~~~~~~--~--~--~~~~~~v~ISAk 345 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAH----EIPTLLVMNKIDMLDDFEPRIDR--D--E--ENKPIRVWLSAQ 345 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC----CCCEEEEEEcccCCCchhHHHHH--H--h--cCCCceEEEeCC
Confidence 899999999999988777765554444433221 68999999999996431111110 1 0 1112 4779999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.+..
T Consensus 346 tG~GId 351 (426)
T PRK11058 346 TGAGIP 351 (426)
T ss_pred CCCCHH
Confidence 998753
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.3e-19 Score=137.25 Aligned_cols=149 Identities=18% Similarity=0.136 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhc---ccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~ 80 (165)
...|+|+|.|++|||||++++++........+.++.......+.+.+ ...+.+||+||... ...+...+ ++.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 45899999999999999999998765433333333333333333331 25789999999532 22233333 466
Q ss_pred ccEEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 81 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++++++|+|+++. ..++....|..++...... ..++|+++|+||+|+.... .....+.+.+ ...++.+||
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~~-e~l~~l~~~l----~~~i~~iSA 309 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEAE-ENLEEFKEKL----GPKVFPISA 309 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCCH-HHHHHHHHHh----CCcEEEEeC
Confidence 9999999999864 5667777777777654321 1278999999999984321 1122222222 256889999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
+++.+.+
T Consensus 310 ~tgeGI~ 316 (424)
T PRK12297 310 LTGQGLD 316 (424)
T ss_pred CCCCCHH
Confidence 9988754
No 177
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=8.6e-20 Score=139.68 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=94.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCC-------------------------------CCCCceeeeEEEEEEEEC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVQFE 53 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 53 (165)
..+.++|+++|++++|||||+++|+...... ...+..+.+..... +.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--FE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--Ee
Confidence 3456999999999999999999998432110 01122233333333 33
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
.....+.+||+||++.|.......+..+|++++|+|++++........+...+..... ..|+++|+||+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNYD 155 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEcccccccc
Confidence 3457899999999998877666677899999999999873122111111222222221 24699999999997532
Q ss_pred Cchhc---hhHHhh-hhc----ceeceeeeccccccCCC
Q 031126 134 SRVVC---IFCDVF-SSI----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 134 ~~~~~---~~~~~~-~~~----~~i~~~~~s~~~~~~~~ 164 (165)
..... +..+.+ ... ....++.+||++|.|..
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcc
Confidence 11111 111222 111 13568999999998875
No 178
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=1.1e-19 Score=126.87 Aligned_cols=146 Identities=17% Similarity=0.091 Sum_probs=89.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCC-------------------------------CCCceeeeEEEEEEEECCeEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQ-------------------------------YKATIGADFLTKEVQFEDRLFT 58 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (165)
||+|+|++|+|||||+++|+...-... ..+..+.+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999975432111 01222233333333333 357
Q ss_pred EEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-
Q 031126 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV- 137 (165)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~- 137 (165)
+.+|||||++.|.......++.+|++++|+|++.+...... ... .+..... ..++|+|+||+|+........
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~-~~~~~~~-----~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHS-YILSLLG-----IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHH-HHHHHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence 88999999988876666778899999999999875432221 111 1222211 245888999999975321111
Q ss_pred --chhHHhhhhc---ceeceeeeccccccCCC
Q 031126 138 --CIFCDVFSSI---ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 138 --~~~~~~~~~~---~~i~~~~~s~~~~~~~~ 164 (165)
....+.+... ....++.+||++|.|..
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 1122222111 12458999999998874
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=1.7e-19 Score=124.54 Aligned_cols=149 Identities=19% Similarity=0.114 Sum_probs=90.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSL 73 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~ 73 (165)
..+..++|+++|++|+|||||++++.+..+.....++.+.+........ ...+.+||+||. +.+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3456789999999999999999999987644333333333322222222 257899999994 233333
Q ss_pred hhhcccc---ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh--chhHHhhhhcc
Q 031126 74 GVAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV--CIFCDVFSSII 148 (165)
Q Consensus 74 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~ 148 (165)
...+++. .+++++++|...+.+.... .+...+... +.|+++++||+|+........ ....+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~~-------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~- 167 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKEY-------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG- 167 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHHc-------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-
Confidence 3444443 3678888998875443321 112222111 779999999999976421111 1122222222
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
...++.+||+++.+..
T Consensus 168 ~~~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 168 DDEVILFSSLKKQGID 183 (196)
T ss_pred CCceEEEEcCCCCCHH
Confidence 4678899999987753
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2e-19 Score=138.18 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR 79 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 79 (165)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.........+ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 12233344455555556666 7899999999876 2233345678
Q ss_pred cccEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 80 GADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
.+|++++|+|+.++.+... +..|+.. . +.|+++|+||+|+.+. .. ....+...-.-.++.+||
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~---~-------~~piilv~NK~D~~~~--~~---~~~~~~~lg~~~~~~iSa 144 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK---S-------NKPVILVVNKVDGPDE--EA---DAYEFYSLGLGEPYPISA 144 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH---c-------CCcEEEEEECccCccc--hh---hHHHHHhcCCCCCEEEEe
Confidence 8999999999987544432 2233322 1 7799999999997542 11 111111111113678899
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+++
T Consensus 145 ~~g~gv~ 151 (435)
T PRK00093 145 EHGRGIG 151 (435)
T ss_pred eCCCCHH
Confidence 9988764
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=2.9e-19 Score=119.66 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCc-eeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFY 78 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 78 (165)
..+|+++|.+|+|||||++++.+.......... ......... .......+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 478999999999999999999987643222111 111111111 222346788999999654332 223346
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc-eeceeeecc
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII-TLSHTHTHG 157 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~i~~~~~s~ 157 (165)
..+|++++|+|++++.+.. ...+...+... +.|+++|+||+|+.... ....+....+.... ...++.+|+
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVKDK-EDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhccccH-HHHHHHHHHHHhccCCCceEEEEe
Confidence 7899999999999862211 12222333222 67999999999997431 33344444554444 356889999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
+++.+..
T Consensus 152 ~~~~~~~ 158 (168)
T cd04163 152 LKGENVD 158 (168)
T ss_pred ccCCChH
Confidence 9887753
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=5.9e-19 Score=135.57 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=98.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------- 73 (165)
...++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999976532 22233344444444444555 45788999995432211
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhcce
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSIIT 149 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~ 149 (165)
...+++.+|++++|+|++++.+..... +...+... +.|+++|+||+|+.+. +... +....+.....
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~-------~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~~~~ 318 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA-------GRALVIVVNKWDLVDE--KTMEEFKKELRRRLPFLDY 318 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc-------CCcEEEEEECccCCCH--HHHHHHHHHHHHhcccccC
Confidence 123568899999999999876665542 22222221 6799999999999743 2222 22233334445
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
++++.+||++|.+++
T Consensus 319 ~~i~~~SA~~~~gv~ 333 (435)
T PRK00093 319 APIVFISALTGQGVD 333 (435)
T ss_pred CCEEEEeCCCCCCHH
Confidence 789999999998864
No 183
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=7.8e-20 Score=125.72 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=97.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
+.++|+++|+.++|||||+++|+........ ....+.+.....+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999854321110 0112223333333312334789999999999
Q ss_pred ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhh-hh
Q 031126 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVF-SS 146 (165)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-~~ 146 (165)
+|.......+..+|++|+|+|+.+....... +.+..+... ++|+++|.||+|+.....+. ..+....+ +.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~-------~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~ 153 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL-------GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKE 153 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT-------T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccccc-------ccceEEeeeeccchhhhHHHHHHHHHHHhccc
Confidence 9999888889999999999999976443322 222333222 78999999999998431111 11222122 11
Q ss_pred c-----ceeceeeeccccccCCC
Q 031126 147 I-----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 147 ~-----~~i~~~~~s~~~~~~~~ 164 (165)
. ..++++.+||++|.|.+
T Consensus 154 ~~~~~~~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 154 YGENGEEIVPVIPISALTGDGID 176 (188)
T ss_dssp TTSTTTSTEEEEEEBTTTTBTHH
T ss_pred cccCccccceEEEEecCCCCCHH
Confidence 1 24679999999998753
No 184
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-18 Score=112.34 Aligned_cols=149 Identities=24% Similarity=0.315 Sum_probs=114.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC--CCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccc-ccchhhccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERF-QSLGVAFYRGA 81 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-~~~~~~~~~~~ 81 (165)
-+..||+++|.-++|||+++..++.++... ...++. .+.+...++.+ +-.-.+.++||.|-... ..+-..++.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 456899999999999999999998876532 233444 55555555443 44457899999997777 55666788999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
|++++||+..+++||+.+....++|.+..... .+||++++||+|+.++. +...+.++.-.....+..|+.++++
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKK---EvpiVVLaN~rdr~~p~-~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKK---EVPIVVLANKRDRAEPR-EVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccc---cccEEEEechhhcccch-hcCHHHHHHHHhhhheeEEEEEecc
Confidence 99999999999999999888888887754433 89999999999998652 4444777777777777888888765
No 185
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=7e-19 Score=138.58 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=102.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (165)
...||+|+|+.++|||||+++|+. +.+.... ..+.+.++......+....+.+.+||+||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 468999999999999999999997 3222111 11234444455555555668999999999999999
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhh------
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFS------ 145 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~------ 145 (165)
.+..+++.+|++++|+|+.+....+.. .++...... ++|+++|+||+|+.......+ .+....+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~~-------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFAY-------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHHc-------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 999999999999999999875433322 222222221 789999999999976533322 22222221
Q ss_pred hcceeceeeeccccccC
Q 031126 146 SIITLSHTHTHGHTNTH 162 (165)
Q Consensus 146 ~~~~i~~~~~s~~~~~~ 162 (165)
.....+++.+||++|.+
T Consensus 156 ~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 156 EQLDFPIVYASALNGIA 172 (607)
T ss_pred cccCCCEEEeEhhcCcc
Confidence 22346689999999975
No 186
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.8e-19 Score=112.33 Aligned_cols=122 Identities=19% Similarity=0.374 Sum_probs=96.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.++|+++|..++||||++..+.-+.. ....++++.+.. ++.+.+ +.|.+||..|++..+..|++|+....++|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve--tVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE--EEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 368999999999999999999987653 334556655444 333444 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
|+|+.++...+++ ..++.+...+..-.+.|+++.+||.|+++..+.+
T Consensus 91 V~Dsa~~dr~eeA---r~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq 137 (180)
T KOG0071|consen 91 VVDSADRDRIEEA---RNELHRIINDREMRDAIILILANKQDLPDAMKPQ 137 (180)
T ss_pred EEeccchhhHHHH---HHHHHHHhCCHhhhcceEEEEecCcccccccCHH
Confidence 9999988666655 4566665555555589999999999999874333
No 187
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=1.9e-19 Score=141.96 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=96.8
Q ss_pred cCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhcc--ccccEEEE
Q 031126 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL 86 (165)
Q Consensus 15 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 86 (165)
|.+|+|||||+|++.+........++.+.+.....+.+++ ..+.+||+||+..+... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876544455555565555666665 45789999998877653 22233 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+|+++.+.. ..+..++... ++|+++|+||+|+.+. +......+.+.+...++++++||++|.+.+
T Consensus 79 VvDat~ler~---l~l~~ql~~~-------~~PiIIVlNK~Dl~~~--~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLEL-------GIPMILALNLVDEAEK--KGIRIDEEKLEERLGVPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchhh---HHHHHHHHhc-------CCCEEEEEehhHHHHh--CCChhhHHHHHHHcCCCEEEEECCCCCCHH
Confidence 9999874322 2223333221 7899999999999654 333334566677777889999999998865
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=4.6e-19 Score=142.97 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=99.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch----------hhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----------VAF 77 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------~~~ 77 (165)
.++|+++|++|||||||+|++.+........+..+.+..... +......+.+||+||...+.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 378999999999999999999987653322333333333333 34444678999999987764321 122
Q ss_pred c--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 78 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
+ +.+|++++|+|+++.++.. .+..++.+. ++|+++|+||+|+.+. +......+.+.+...++++.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~-------giPvIvVlNK~Dl~~~--~~i~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL-------GIPCIVALNMLDIAEK--QNIRIDIDALSARLGCPVIPL 148 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHHc-------CCCEEEEEEchhhhhc--cCcHHHHHHHHHHhCCCEEEE
Confidence 2 4789999999999854422 233444332 7899999999999754 344445566777777889999
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
|+++|.+.+
T Consensus 149 SA~~g~GId 157 (772)
T PRK09554 149 VSTRGRGIE 157 (772)
T ss_pred EeecCCCHH
Confidence 999988743
No 189
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=3.4e-19 Score=134.25 Aligned_cols=152 Identities=13% Similarity=-0.006 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 80 (165)
...|+|+|.||+|||||+|+|+.........+.++.......+...+ ...+.++|+||...-. ......++.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 45799999999999999999998765433334343344444444432 2358899999954211 112234688
Q ss_pred ccEEEEEEeCC---ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce--eceeee
Q 031126 81 ADCCVLVYDVN---SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT--LSHTHT 155 (165)
Q Consensus 81 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--i~~~~~ 155 (165)
++++++|+|++ ....++....|+.++...... ..+.|+++|+||+|+... ....+..+.+.+... ...+.+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999988 455666677777777654321 116799999999999754 333333333333222 357889
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
||+++.++.
T Consensus 314 SA~tg~GId 322 (390)
T PRK12298 314 SAASGLGVK 322 (390)
T ss_pred ECCCCcCHH
Confidence 999987753
No 190
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=1.9e-19 Score=125.13 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceeeeEEEEEEEE-------------------------C--C----
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQF-------------------------E--D---- 54 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~---- 54 (165)
++|+++|+.|+|||||+..+..... ........+.......+.. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4899999999999999999965421 1111111111111000000 0 0
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 134 (165)
....+.|||+||++.+.......+..+|++++|+|++++.........+..+.. .. ..|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~-----~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG-----LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC-----CCcEEEEEEchhccCHHH
Confidence 115789999999998888877778889999999999874211111111222211 11 347999999999975311
Q ss_pred ch--hchhHHhhhhc--ceeceeeeccccccCCC
Q 031126 135 RV--VCIFCDVFSSI--ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 135 ~~--~~~~~~~~~~~--~~i~~~~~s~~~~~~~~ 164 (165)
.. ..+..+.+... ....++.+||++|.+..
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~ 188 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNID 188 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHH
Confidence 10 11122222211 24568999999998764
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=5.4e-19 Score=129.29 Aligned_cols=147 Identities=17% Similarity=0.123 Sum_probs=89.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCc-eeeeEEEEEEEECCeEEEEEEEeCCCccccc--------cchhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 77 (165)
+--.|+++|.+|+|||||+|+|++......+... ++.......... ....+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 3467999999999999999999987764322211 111111111222 22688999999964432 122335
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc-ceeceeeec
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI-ITLSHTHTH 156 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~i~~~~~s 156 (165)
+..+|++++|+|+++..+.. .......+.. . +.|+++|+||+|+.... ....+..+.+.+. ....++.+|
T Consensus 82 ~~~~D~il~vvd~~~~~~~~-~~~i~~~l~~----~---~~pvilVlNKiDl~~~~-~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPG-DEFILEKLKK----V---KTPVILVLNKIDLVKDK-EELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HhcCCEEEEEEeCCCCCChh-HHHHHHHHhh----c---CCCEEEEEECCcCCCCH-HHHHHHHHHHHhhCCCCeEEEec
Confidence 67899999999999832211 1122222221 1 67999999999997431 2233333333332 224578999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
|+++.+.+
T Consensus 153 A~~~~gv~ 160 (292)
T PRK00089 153 ALKGDNVD 160 (292)
T ss_pred CCCCCCHH
Confidence 99987753
No 192
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=8.9e-20 Score=122.09 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=81.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc----cchhhccccccEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAFYRGADCCV 85 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~~~~~~~~~i 85 (165)
+|+++|.+|+|||||++++.+... . ...+ ....+... .+||+||..... ......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999875431 1 1111 11222222 269999963222 22223468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|+|+++..++. ..|+..+ .. +.|+++++||+|+...+.....++.+.+. ...+++++||++|.++.
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~---~~-----~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~--~~~p~~~~Sa~~g~gi~ 136 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI---GV-----SKRQIAVISKTDMPDADVAATRKLLLETG--FEEPIFELNSHDPQSVQ 136 (158)
T ss_pred EEEeCCCccccc--CHHHHhc---cC-----CCCeEEEEEccccCcccHHHHHHHHHHcC--CCCCEEEEECCCccCHH
Confidence 999999876652 2333332 11 67999999999996542222122222222 12479999999998753
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=5.1e-19 Score=139.39 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--CCCCCC------------CCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (165)
.||+|+|+.++|||||+++|+.. .+.... ....+.+.......+......+.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 68999999999999999999863 221110 0111233333333333445889999999999999999
Q ss_pred hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhh------hc
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFS------SI 147 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~------~~ 147 (165)
..+++.+|++++|+|+.+.. ......|+..+... ++|+|+|+||+|+.......+ .+....+. +.
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL-------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999998743 22333444444332 789999999999976532222 22222222 22
Q ss_pred ceeceeeeccccccC
Q 031126 148 ITLSHTHTHGHTNTH 162 (165)
Q Consensus 148 ~~i~~~~~s~~~~~~ 162 (165)
...+++.+||++|.+
T Consensus 154 l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 154 LDFPIVYASGRAGWA 168 (594)
T ss_pred ccCcEEechhhcCcc
Confidence 345689999999864
No 194
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=9.1e-19 Score=134.33 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc--------cccccchhhcccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG 80 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~ 80 (165)
+|+++|.+|+|||||+|+|.+.... ....+..+.+.........+ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 4899999999999999999987642 12233344445555555555 46999999995 3344445566789
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|+|+.++.+.... .+...+.+. ++|+++|+||+|+.... ... ..+...--..++.+||+.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~~-------~~piilVvNK~D~~~~~--~~~---~~~~~lg~~~~~~vSa~~g 145 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRKS-------GKPVILVANKIDGKKED--AVA---AEFYSLGFGEPIPISAEHG 145 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHHh-------CCCEEEEEECccCCccc--ccH---HHHHhcCCCCeEEEeCCcC
Confidence 9999999999875444331 122222221 78999999999997642 111 1122222224788899988
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+.+
T Consensus 146 ~gv~ 149 (429)
T TIGR03594 146 RGIG 149 (429)
T ss_pred CChH
Confidence 7753
No 195
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=110.72 Aligned_cols=122 Identities=26% Similarity=0.495 Sum_probs=97.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+..+.+||+++|..++|||||++.|...... .-.++.+ +..+.+.+++ .+.+.+||..|+...+..|..|+...|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 3466799999999999999999999876543 2344444 3344554443 4899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+|||+|.+++..|+++.+-+.++....+.. .+|+.+..||.|+.-.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~---~vpvlIfankQdllta 134 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLA---EVPVLIFANKQDLLTA 134 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhh---ccceeehhhhhHHHhh
Confidence 999999999999998877666655443332 8999999999998654
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=1.3e-18 Score=140.34 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=92.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 77 (165)
...+|+|+|.+++|||||+|+|++.... ....+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4578999999999999999999987542 12233444444444444444 5788999999653 22333456
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++++|+|+++...... ..|...+... ++|+++|+||+|+.... ....++ ...-.. ..+.+||
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~~-------~~pvIlV~NK~D~~~~~-~~~~~~---~~lg~~-~~~~iSA 418 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRRA-------GKPVVLAVNKIDDQASE-YDAAEF---WKLGLG-EPYPISA 418 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHhc-------CCCEEEEEECcccccch-hhHHHH---HHcCCC-CeEEEEC
Confidence 788999999999986432221 2333333321 78999999999986531 111111 111111 2467999
Q ss_pred ccccCCCC
Q 031126 158 HTNTHSNQ 165 (165)
Q Consensus 158 ~~~~~~~~ 165 (165)
++|.|+++
T Consensus 419 ~~g~GI~e 426 (712)
T PRK09518 419 MHGRGVGD 426 (712)
T ss_pred CCCCCchH
Confidence 99998753
No 197
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=8.3e-19 Score=123.30 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=90.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-------------------------------CCCCCceeeeEEEEEEEECCeEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT 58 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (165)
+|+++|++++|||||+.+|+...-. ....+..+.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 5899999999999999998642110 0001122233333334444 478
Q ss_pred EEEEeCCCccccccchhhccccccEEEEEEeCCChhh---HH---HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+.+||+||+..+.......+..+|++++|+|+++... +. .....+... .... ..|+++|+||+|+...
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG-----VKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC-----CCeEEEEEEccccccc
Confidence 9999999998887777777788999999999998421 01 111111111 1111 3689999999999742
Q ss_pred --CCchhc----hhHHhhhhc----ceeceeeeccccccCCC
Q 031126 133 --NSRVVC----IFCDVFSSI----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 133 --~~~~~~----~~~~~~~~~----~~i~~~~~s~~~~~~~~ 164 (165)
...... +....+... ..+.++.+||++|.|..
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111111 221122221 13669999999999875
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=8.9e-19 Score=116.25 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=93.7
Q ss_pred EEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch-------hhccccccEE
Q 031126 13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------VAFYRGADCC 84 (165)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~~~~ 84 (165)
++|++|+|||||++++.+.... .................... ...+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987554 22222222233333333221 3578999999977655433 3467889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhch--hHHhhhhcceeceeeeccccccC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCI--FCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++|+|..+..+..... +....... +.|+++|+||+|+.......... ............++..|+++|.+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~-------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER-------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc-------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 9999999877766554 23332221 78999999999998753222111 12233444566799999999877
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
..
T Consensus 152 v~ 153 (163)
T cd00880 152 ID 153 (163)
T ss_pred HH
Confidence 53
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=6.5e-19 Score=142.07 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=96.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G 74 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~ 74 (165)
..++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+.+++. .+.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988742 222333445555555666664 466999999532 1111 1
Q ss_pred hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hc-hhHHhhhhcceece
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VC-IFCDVFSSIITLSH 152 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~-~~~~~~~~~~~i~~ 152 (165)
...++.+|++++|+|++++.+...... +..+... ++|+++|+||+|+.+..... .. .....+......+.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~~-------~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVDA-------GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHHc-------CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence 234688999999999998877776542 3333221 78999999999997642111 11 11112222223456
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+.+||++|.+++
T Consensus 599 i~iSAktg~gv~ 610 (712)
T PRK09518 599 VNLSAKTGWHTN 610 (712)
T ss_pred EEEECCCCCCHH
Confidence 789999998764
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=3e-18 Score=121.40 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=59.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD 82 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 82 (165)
+++++|.+|+|||||+++|.+........+..+.+.....+.+.+ ..+.+||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764332233333344455555555 678999999964332 12335678999
Q ss_pred EEEEEEeCCChh
Q 031126 83 CCVLVYDVNSMK 94 (165)
Q Consensus 83 ~~i~v~d~~~~~ 94 (165)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998754
No 201
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=2.9e-18 Score=123.53 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=80.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCC----------CC----------ceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KA----------TIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
..+|+|+|++|+|||||+++|+...-.... .. ..+.++......+....+.+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 478999999999999999999853211000 00 0112223333344455588999999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
.+|.......++.+|++++|+|+++..... ...++..... . ++|+++++||+|+....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~----~---~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL----R---GIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh----c---CCCEEEEEECCccCCCC
Confidence 988877778889999999999998753322 2222222211 1 78999999999987653
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=1.6e-18 Score=123.02 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=79.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCC-------------CC---CceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQ-------------YK---ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (165)
||+++|++|+|||||+++|+....... +. ...+.........+......+.+||+||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986321100 00 01111222222333334478999999999999888
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+..+++.+|++++|+|+.+.... ....++..+... ++|+++|+||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccCC
Confidence 88999999999999999986443 233344433322 7899999999999864
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=3.5e-18 Score=117.90 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=93.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (165)
.++|+++|+.++|||||+++|+.... .....+. .+.......+......+.++||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC--ccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 48999999999999999999975310 0000122 22222233344445678899999999888
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCchhc----hhHHhhhh
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVC----IFCDVFSS 146 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~----~~~~~~~~ 146 (165)
......+..+|++++|+|+........ ...+..+... ++| +|+|.||+|+.... +... +..+.+..
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~-~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDE-ELLELVEMEVRELLSK 150 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcH-HHHHHHHHHHHHHHHH
Confidence 877888899999999999986533222 1222222222 566 78999999996431 1111 22233332
Q ss_pred c----ceeceeeeccccccCC
Q 031126 147 I----ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 147 ~----~~i~~~~~s~~~~~~~ 163 (165)
. ..++++.+||++|.|.
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 2 2477999999999875
No 204
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.6e-18 Score=123.49 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=96.1
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc-----ccc---
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-----FQS--- 72 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~--- 72 (165)
||.-++....|+|.|.||+|||||++.+..........++++.......+..++ ..++++||||--+ ...
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence 466777889999999999999999999999998888888887888777777666 6788899999321 111
Q ss_pred chhhcc-ccccEEEEEEeCC--ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 73 LGVAFY-RGADCCVLVYDVN--SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 73 ~~~~~~-~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.....+ .-.++++|+||.+ ...+.+.-..++.++...+ +.|+++|.||.|+.+.
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch
Confidence 111122 3468999999987 4567777777777777665 5799999999999865
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=2.7e-18 Score=134.86 Aligned_cols=113 Identities=29% Similarity=0.327 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC----ceeeeEEEEEEEE------------CCeEEEEEEEeCCCccccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQF------------EDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~D~~g~~~~~ 71 (165)
..-|+++|++++|||||+++|.+..+...... +.+.......... ......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998876433222 2222222111100 0001138899999999999
Q ss_pred cchhhccccccEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 72 SLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
.++..+++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~-------~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH-------cCCCEEEEEECCCccc
Confidence 988888999999999999987 444433321 111 1789999999999964
No 206
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.79 E-value=8.7e-22 Score=130.30 Aligned_cols=160 Identities=33% Similarity=0.577 Sum_probs=127.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhccccccEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
.-.++++|+|+-++|||+++.+++...+...+..+++.++..+.+.-+. ..+++.+||..|++.+..+...+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 4468999999999999999999999999888888888777666665544 345789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
.+|||+++..+|+....|..++..-........+|+++..||||+...-..... .+.+.-++---...+++|+|++.|+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 999999999999999999999987666655558899999999999653212211 2222222223345899999999998
Q ss_pred CC
Q 031126 164 NQ 165 (165)
Q Consensus 164 ~~ 165 (165)
++
T Consensus 183 ~E 184 (229)
T KOG4423|consen 183 PE 184 (229)
T ss_pred hH
Confidence 63
No 207
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.1e-18 Score=130.78 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=119.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC---------------CCCCCCceeeeEEEE-EEEECCeEEEEEEEeCCCccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---------------SNQYKATIGADFLTK-EVQFEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~ 69 (165)
++..|+.|+.+...|||||..+|+...- .-...+.++....+. .++.+++.+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 6789999999999999999999986321 011122222222222 223347789999999999999
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT 149 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (165)
|.....+.+..|+++++|+|+......+....++..+.. +..+|.|.||+|++..+.+.+....+.+-..-+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998777777777776643 778999999999999887888877777777777
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
-.++.+|||+|.|+.
T Consensus 210 ~~~i~vSAK~G~~v~ 224 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVE 224 (650)
T ss_pred cceEEEEeccCccHH
Confidence 799999999999874
No 208
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=121.54 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=91.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCce-eeeEEEEEEEECCeEEEEEEEeCCCccccc--------cchhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 77 (165)
+---|+|+|.|++|||||+|++++.+.+..+.... +.......... +...+.++||||-..-. ......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 44678999999999999999999998764443322 12222222222 34788899999933222 223344
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc--hhHHhhhhcceeceeee
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC--IFCDVFSSIITLSHTHT 155 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~i~~~~~ 155 (165)
++.+|++++|+|++..... ..+++.+..+.. +.|++++.||+|...+.....+ ++........ ..+..
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~--~ivpi 152 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFK--EIVPI 152 (298)
T ss_pred hccCcEEEEEEeccccCCc--cHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcc--eEEEe
Confidence 6789999999999975443 222222222221 7799999999998776332122 2222222222 57888
Q ss_pred ccccccCC
Q 031126 156 HGHTNTHS 163 (165)
Q Consensus 156 s~~~~~~~ 163 (165)
||+.|.|.
T Consensus 153 SA~~g~n~ 160 (298)
T COG1159 153 SALKGDNV 160 (298)
T ss_pred eccccCCH
Confidence 88888765
No 209
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=2.4e-18 Score=120.70 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCC----------------CCCceeeeEEEEEEEEC--------CeEEEEEEEeC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQ----------------YKATIGADFLTKEVQFE--------DRLFTLQIWDT 64 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~ 64 (165)
.||+++|+.++|||||+++|+....... ..+..+.......+.+. ++.+.+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999975421100 00111111111122222 34688999999
Q ss_pred CCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
||+.+|.......++.+|++++|+|+......+....+ ...... ++|+++|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~~-------~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALKE-------RVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHHc-------CCCEEEEEECCCcc
Confidence 99999999999999999999999999987655432222 222111 67999999999986
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=9.9e-18 Score=132.06 Aligned_cols=114 Identities=30% Similarity=0.364 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC----ceeeeEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQ--FEDRL-----F-----TLQIWDTAGQER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~~~D~~g~~~ 69 (165)
.+...|+++|++++|||||+++|.+......... +.+......... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4556799999999999999999986654322221 222222111110 00111 1 268999999999
Q ss_pred cccchhhccccccEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
|...+...+..+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~-------~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR-------RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH-------cCCCEEEEEECcCCc
Confidence 99888888899999999999997 454444321 111 178999999999985
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=6.4e-18 Score=118.35 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCC-----------C------CceeeeEE--EEEEEE---CCeEEEEEEEeCCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------K------ATIGADFL--TKEVQF---EDRLFTLQIWDTAG 66 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~------~~~~~~~~--~~~~~~---~~~~~~~~~~D~~g 66 (165)
.+|+++|+.++|||||+++|+........ . ...+.+.. ...+.. ++..+.+.+||+||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37999999999999999999875432210 0 00111111 111111 34568899999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.++......++..+|++++|+|+.+..+... ..++...... +.|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~-------~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE-------GLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc-------CCCEEEEEECcccC
Confidence 99998888888999999999999987665532 2333332211 67999999999986
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=1.3e-17 Score=111.90 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=85.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchhhccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR 79 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 79 (165)
.|+++|.+|+|||||++.+.+..+......+.+.+.........+ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444444433333333333333 788999999432 2333333343
Q ss_pred ---cccEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-h-chhHHhhh-hcceec
Q 031126 80 ---GADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-V-CIFCDVFS-SIITLS 151 (165)
Q Consensus 80 ---~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~-~~~~~~~~-~~~~i~ 151 (165)
..+++++++|.....+.. .+..|+... +.|+++|+||+|+....... . ......+. .....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 457888999988653222 233333321 67999999999996542111 1 12222222 234457
Q ss_pred eeeeccccccCC
Q 031126 152 HTHTHGHTNTHS 163 (165)
Q Consensus 152 ~~~~s~~~~~~~ 163 (165)
++.+|++++.+.
T Consensus 148 ~~~~Sa~~~~~~ 159 (170)
T cd01876 148 IILFSSLKGQGI 159 (170)
T ss_pred eEEEecCCCCCH
Confidence 889999998765
No 213
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=109.21 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=101.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC--------CCCC----CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------NQYK----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (165)
.....+|+|+|+.++|||||+..+...... .... .+...++..... . ....+.++++|||++|+-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHH
Confidence 445689999999999999999999877531 1111 122233332222 2 225678889999999999
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceece
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~ 152 (165)
.|..+++.+.++++++|.+.+..+ .....+..+ .... .+|+++++||.|+....+.+....+..+.. ..+..
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~~-----~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~v 155 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSRN-----PIPVVVAINKQDLFDALPPEKIREALKLEL-LSVPV 155 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhcc-----CCCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCce
Confidence 999999999999999999998888 333333333 2221 389999999999998744433333222222 46678
Q ss_pred eeeccccccC
Q 031126 153 THTHGHTNTH 162 (165)
Q Consensus 153 ~~~s~~~~~~ 162 (165)
+..++.++..
T Consensus 156 i~~~a~e~~~ 165 (187)
T COG2229 156 IEIDATEGEG 165 (187)
T ss_pred eeeecccchh
Confidence 8888876543
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=6.9e-18 Score=126.15 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhcc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY 78 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 78 (165)
..|+|+|.||+|||||.|||...... ....+.++.|..+...+..+ ..|.++||+|-+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998765 33355666777777777777 45889999995422 22333556
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
..||++|+|+|.....+.++- .+..+.+. . ++|+|+|+||+|-.......-+-+...+.+..++|..++.+
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~-~-----~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRR-S-----KKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHh-c-----CCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccC
Confidence 889999999999876554331 12222221 1 68999999999997543233334555567777777666544
No 215
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.6e-18 Score=113.62 Aligned_cols=149 Identities=20% Similarity=0.281 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC---CC----CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKK---FS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 79 (165)
.-+.++|+|..++|||||+......- +. ..-.++.+ ....+..+++ ..+.+||..|++..+++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 34789999999999999999876431 11 11223333 3334444443 57899999999999999999999
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHH-----hhhhcceeceee
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCD-----VFSSIITLSHTH 154 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~i~~~~ 154 (165)
.+|++++++|+++++.+++-......+...-. .++.|+++.+||.|+.+. ....+... .+-......+..
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~---leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEK---LEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHH---hcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCcccc
Confidence 99999999999999999877655555443322 228999999999999876 33332222 222334556788
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||.+|.+++
T Consensus 167 vSal~gegv~ 176 (197)
T KOG0076|consen 167 VSALTGEGVK 176 (197)
T ss_pred chhhhcccHH
Confidence 8888888765
No 216
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=124.42 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=99.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------h
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV--------A 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~ 76 (165)
...++++|+|.||+|||||+|.|++.+.. ....+.++.|.....+.++| +.+.+.||.|..+...... .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 45789999999999999999999998866 33456677888888899999 7788889999765544333 2
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
.++.||.+++++|.+.+.+.....- +. ... .++|+++|.||.||..+.. .... .-......+..|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~----~~~~~i~v~NK~DL~~~~~--~~~~----~~~~~~~~i~iS 357 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLAL-IE----LLP----KKKPIIVVLNKADLVSKIE--LESE----KLANGDAIISIS 357 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHH-HH----hcc----cCCCEEEEEechhcccccc--cchh----hccCCCceEEEE
Confidence 3578999999999998633332211 11 111 1789999999999987622 1111 111222477888
Q ss_pred cccccCC
Q 031126 157 GHTNTHS 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
+++|.+.
T Consensus 358 a~t~~Gl 364 (454)
T COG0486 358 AKTGEGL 364 (454)
T ss_pred ecCccCH
Confidence 8877553
No 217
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.5e-17 Score=124.53 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=119.7
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCC-----------------CCCCCCceeeeEEEEEEEE-CCeEEEEEEEeC
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------SNQYKATIGADFLTKEVQF-EDRLFTLQIWDT 64 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~ 64 (165)
.+..+..|+.|+.+-..|||||..|++.... .....-|.........+.. +++.+.+.++||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 4566788999999999999999999986321 1111222222233333333 458899999999
Q ss_pred CCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh
Q 031126 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF 144 (165)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 144 (165)
|||-+|.....+.+..|.++++++|++..-..+.+...+..+.. +.-||.|.||+||+..+...+....+..
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adpervk~eIe~~ 155 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADPERVKQEIEDI 155 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998777777777776654 7789999999999998777777666777
Q ss_pred hhcceeceeeeccccccCCC
Q 031126 145 SSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 145 ~~~~~i~~~~~s~~~~~~~~ 164 (165)
-.+.....+.+|||+|.++.
T Consensus 156 iGid~~dav~~SAKtG~gI~ 175 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIE 175 (603)
T ss_pred hCCCcchheeEecccCCCHH
Confidence 67777788999999999875
No 218
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=5.3e-17 Score=117.17 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=77.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC------------------CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (165)
||+++|++++|||||+++|+..... ....+..+.+.....+... ...+.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 5899999999999999999742110 1111222233333333444 4788999999999888
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..+...++.+|++++|+|+.+....... ..+..+... ++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~~-------~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADRY-------NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECCCCCCC
Confidence 8888899999999999999875433221 222222221 7899999999999764
No 219
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=3.1e-17 Score=126.71 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=95.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC---------------------------------CCceeeeEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY---------------------------------KATIGADFLTKEV 50 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 50 (165)
+....+||+++|++++|||||+++|+...-.... .+..+.+.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4567799999999999999999999754211000 0111223322223
Q ss_pred EECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 51 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
......+.+||+||++.|.......+..+|++++|+|+...........+ .+..... ..|+|+|+||+|+.
T Consensus 103 --~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-----~~~iIvvvNKiD~~ 173 (474)
T PRK05124 103 --STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-----IKHLVVAVNKMDLV 173 (474)
T ss_pred --ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-----CCceEEEEEeeccc
Confidence 33346788999999998877666677999999999999865322111111 1122221 24789999999997
Q ss_pred CCCCchhchhHHhhhh-------cceeceeeeccccccCCC
Q 031126 131 GGNSRVVCIFCDVFSS-------IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 131 ~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~~~~ 164 (165)
+.......+..+.+.. .....++..||++|.|+.
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 5322222222222211 224678999999998864
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.75 E-value=1.2e-17 Score=127.16 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=91.9
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceeeeEEE--EEE----------------EEC--C----
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLT--KEV----------------QFE--D---- 54 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~--~~~----------------~~~--~---- 54 (165)
=++..+.++|+++|+.++|||||+.+|...-. .....+..+.+... ... ..+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 36778889999999999999999999964311 11111111111110 000 000 0
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
....+.+||+||++.|..........+|++++|+|++++. ....... +..+. ... ..|+++|+||+|+.+..
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~-~~~-----i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALD-IIG-----IKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHH-HcC-----CCcEEEEEEeeccccch
Confidence 0257899999999988776655667789999999999643 1221111 11121 111 23689999999997642
Q ss_pred Cch--hchhHHhhhh--cceeceeeeccccccCCC
Q 031126 134 SRV--VCIFCDVFSS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 134 ~~~--~~~~~~~~~~--~~~i~~~~~s~~~~~~~~ 164 (165)
... ..+....+.. .....++.+||++|.|.+
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~ 190 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNID 190 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHH
Confidence 111 1111121211 123568999999998764
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.4e-17 Score=124.23 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=93.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC-------CC---------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK-------KF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
+..+.++|+++|++++|||||+++|+.. .+ .....+..+.+. ....+......+.++|+||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCH
Confidence 4567899999999999999999999862 10 000112222222 22333334457889999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEE-EEEeCCCCCCCCCch--hc-hhHHh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSRV--VC-IFCDV 143 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~--~~-~~~~~ 143 (165)
..|.......+..+|++++|+|+........ .+.+..+... ++|.+ +++||+|+.+..... .. +....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~-------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 9888777777889999999999987432222 1222222211 66755 689999997431111 11 22222
Q ss_pred hhhc----ceeceeeeccccccCC
Q 031126 144 FSSI----ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 144 ~~~~----~~i~~~~~s~~~~~~~ 163 (165)
+... ..++++.+||.+|.|.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEG 181 (396)
T ss_pred HHHcCCCcCceeEEecchhccccC
Confidence 2221 1367899999998763
No 222
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1.6e-17 Score=126.33 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=91.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC---CCCCCceeeeEEEEE--------------EEE----CC------eEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE--------------VQF----ED------RLFT 58 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 58 (165)
+..++|+++|++++|||||+++|...... +...+..+....... +.. +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999753211 110111111111000 000 01 1357
Q ss_pred EEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-h
Q 031126 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-V 137 (165)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~ 137 (165)
+.+||+||++.|...+......+|++++|+|++++.......+.+..+ .... ..|+++|+||+|+.+..... .
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence 899999999999888888888899999999999643111112222222 2221 34789999999997642111 1
Q ss_pred -chhHHhhhhc--ceeceeeeccccccCCC
Q 031126 138 -CIFCDVFSSI--ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 138 -~~~~~~~~~~--~~i~~~~~s~~~~~~~~ 164 (165)
.+..+.+... ....++.+||++|.|..
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~ 185 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANID 185 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChH
Confidence 1111111111 24568999999998753
No 223
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.74 E-value=4.7e-17 Score=128.89 Aligned_cols=144 Identities=18% Similarity=0.109 Sum_probs=92.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC---CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
-|.++|+.++|||||+++|.+.. +.+...+..+.+.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998633 3333333333444333332222 2358899999999998887788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCchhc----hhHHhhhhc--ceeceeeecccc
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVC----IFCDVFSSI--ITLSHTHTHGHT 159 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~----~~~~~~~~~--~~i~~~~~s~~~ 159 (165)
|+|++.....+.. +.+. +.... ++| +++|+||+|+.+. .... +..+.+... ...+++.+||++
T Consensus 81 VVda~eg~~~qT~-ehl~-il~~l------gi~~iIVVlNKiDlv~~--~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 81 VVACDDGVMAQTR-EHLA-ILQLT------GNPMLTVALTKADRVDE--ARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred EEECCCCCcHHHH-HHHH-HHHHc------CCCeEEEEEECCccCCH--HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 9999874222211 1111 22221 445 6899999999753 2222 222222221 235789999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|.+
T Consensus 151 G~gI~ 155 (614)
T PRK10512 151 GRGID 155 (614)
T ss_pred CCCCH
Confidence 98864
No 224
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=1.3e-16 Score=115.53 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=75.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----- 72 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----- 72 (165)
.++|+++|++|+|||||+|+|.+..+... ...+.........+..++..+.+.+|||||-.+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876543 233334444455556677778999999999322111
Q ss_pred ---------------------chhhccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 73 ---------------------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 73 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
.....+. .+|+++++++.+...-...-...++.+ .. ++|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l---~~-----~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL---SK-----RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH---hc-----cCCEEEEEECCCc
Confidence 1101222 468888888877521111111222222 21 6799999999999
Q ss_pred CCC
Q 031126 130 DGG 132 (165)
Q Consensus 130 ~~~ 132 (165)
...
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 653
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=5.5e-17 Score=125.05 Aligned_cols=149 Identities=15% Similarity=0.058 Sum_probs=95.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC------C----------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------F----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.....++|+++|++++|||||+++|+... . .....+..+.+.....+.. +...+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence 45678999999999999999999998521 0 1111222223332333333 3357889999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCc--hhc-hhHHh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR--VVC-IFCDV 143 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~-~~~~~ 143 (165)
++|.......+..+|++++|+|+.+...... .+++..+... ++| +|++.||+|+.+.... .+. +....
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 9998888888889999999999987543332 2222222222 667 7889999999753111 111 22222
Q ss_pred hhhc----ceeceeeeccccccC
Q 031126 144 FSSI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 144 ~~~~----~~i~~~~~s~~~~~~ 162 (165)
+... ..++++.+|+.+|.|
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 2221 256788888888754
No 226
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.74 E-value=1.1e-17 Score=112.94 Aligned_cols=121 Identities=21% Similarity=0.300 Sum_probs=75.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhc---cccccE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADC 83 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~ 83 (165)
...|+++|++|+|||+|..+|..+...+...+. ..+. ...+ ....-.+.++|+||++..+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999999654433322 1111 1112 1223467888999999988755554 788999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 84 CVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 84 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
+|||+|++. .....+..+++..+....... ...+|+++++||.|+....
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccC
Confidence 999999974 455666666655555443321 2378999999999997753
No 227
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=4.5e-17 Score=124.89 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=96.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC-------------------------------CCCCCCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 52 (165)
...+.++|+++|+.++|||||+.+|+..-- ........+.+ .....+
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~ 80 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKF 80 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEe
Confidence 456779999999999999999999874211 00011112222 223334
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHH-------HHHHHHHHHHHHcCCCCCCCC-cEEEEE
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-------NLNNWREEFLIQASPSDPDNF-PFVVLG 124 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~-piilv~ 124 (165)
......+.++|+||+++|.......+..+|++|+|+|+++.. ++ ...+.+... ... ++ ++|+++
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~-~~~------gi~~iIV~v 152 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLA-FTL------GVKQMICCC 152 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHH-HHc------CCCcEEEEE
Confidence 455578999999999999999999999999999999998731 21 122211111 111 55 578899
Q ss_pred eCCCCCCCC-C--c---hhchhHHhhhhc----ceeceeeeccccccCCC
Q 031126 125 NKIDVDGGN-S--R---VVCIFCDVFSSI----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 125 nK~Dl~~~~-~--~---~~~~~~~~~~~~----~~i~~~~~s~~~~~~~~ 164 (165)
||+|+.+.. . + ...+....+.+. ..+.++.+||.+|.|..
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 999986211 0 1 111222222221 13679999999998863
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=5.7e-17 Score=123.02 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=91.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC-----C--C---------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK-----K--F---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~-----~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
..+.++|+++|+.++|||||+++|+.. . . .....+..+.+. ....+......+.+||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 456799999999999999999999732 0 0 001112222333 333444445678999999999
Q ss_pred ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcE-EEEEeCCCCCCCCCch--hc-hhHHhh
Q 031126 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGGNSRV--VC-IFCDVF 144 (165)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~--~~-~~~~~~ 144 (165)
.|..........+|++++|+|+......... +.+..+... ++|. |+++||+|+.+..... .. +....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 9887776667888999999999874322221 222222221 5564 5789999997532111 11 222222
Q ss_pred hhc----ceeceeeeccccccC
Q 031126 145 SSI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 145 ~~~----~~i~~~~~s~~~~~~ 162 (165)
... ..++++.+||.+|.+
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~ 180 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKALE 180 (394)
T ss_pred HhcCCCccCccEEECccccccc
Confidence 222 126789999988753
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=8.5e-17 Score=122.55 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=94.6
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCC----------------CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.....++|+++|++++|||||+++|+..... ....+..+.+... ..+..+...+.++|+||+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCCh
Confidence 4566799999999999999999999864110 1111222233222 233333457788999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCch--h-chhHHh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRV--V-CIFCDV 143 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~-~~~~~~ 143 (165)
..|.......+..+|++++|+|+......+.. +.+..+... ++| +|++.||+|+.+..... . .+....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~~~-------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAKQV-------GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 98888777788899999999999865332221 222222222 667 77899999997532111 1 122222
Q ss_pred hhhc----ceeceeeeccccccC
Q 031126 144 FSSI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 144 ~~~~----~~i~~~~~s~~~~~~ 162 (165)
+... ..++++.+||.+|.|
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHhCCCCCcceEEEcchhhccc
Confidence 2221 136788999998875
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=4.7e-17 Score=123.76 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCC---------------------------------CCCceeeeEEEEEEEECCe
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------------------YKATIGADFLTKEVQFEDR 55 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 55 (165)
+||+++|+.++|||||+++|+...-... ..+..+.+.....+. ..
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~--~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS--TD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc--cC
Confidence 4899999999999999999974321100 011112222233332 33
Q ss_pred EEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc
Q 031126 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 135 (165)
...+.++|+||++.|.......+..+|++++|+|+......+....+. +..... ..++++|+||+|+.+....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~-----~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLG-----IRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcC-----CCcEEEEEEecccccchHH
Confidence 457889999999998877777889999999999998654332222111 112211 3368999999999754222
Q ss_pred hhchhHHhh----hh--cceeceeeeccccccCCC
Q 031126 136 VVCIFCDVF----SS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 136 ~~~~~~~~~----~~--~~~i~~~~~s~~~~~~~~ 164 (165)
...+..+.+ .. ...+.++.+||++|.|..
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 222111111 11 124568999999998864
No 231
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=118.91 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=103.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G 74 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~ 74 (165)
..++|+|+|.|++|||||+|++++.+.. ....+.++.+.....++.++ -.+.++||.|-.. |... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 5799999999999999999999988754 22344555677777777777 4577779999322 2211 1
Q ss_pred hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhccee
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSIITL 150 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~i 150 (165)
...+..++++++|+|++.+.+.++..- ...+... ..++++|.||.|+.+.+..... .....+....-.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~~~-------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIEEA-------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHHHc-------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 133578999999999998766654321 2222222 7799999999999775322222 333445555666
Q ss_pred ceeeeccccccCCCC
Q 031126 151 SHTHTHGHTNTHSNQ 165 (165)
Q Consensus 151 ~~~~~s~~~~~~~~~ 165 (165)
+.+..||++|.+.++
T Consensus 327 ~i~~iSA~~~~~i~~ 341 (444)
T COG1160 327 PIVFISALTGQGLDK 341 (444)
T ss_pred eEEEEEecCCCChHH
Confidence 789999999988653
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.72 E-value=1.3e-16 Score=115.34 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=77.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCC------------------CceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK------------------ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (165)
||+++|++|+|||||+++++......... ...+.......+... ...+.+||+||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 58999999999999999997532110000 011111122223333 3678999999998888
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
......+..+|++++|+|+++........-| ..+... ++|+++|+||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~-------~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA-------GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc-------CCCEEEEEECCccCCC
Confidence 7888889999999999999986554333222 222211 7899999999999765
No 233
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=2.7e-16 Score=99.99 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=67.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR 79 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 79 (165)
+|+|+|.+|+|||||+|+|.+.... ....+..+.........+++. .+.++|+||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 111222223333445556664 4568999994321 111223347
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeC
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (165)
.+|++++|+|.+++.. +.....+..+. . ++|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~-----~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK---N-----KKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH---T-----TSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh---c-----CCCEEEEEcC
Confidence 8999999999877322 22223333331 1 8899999998
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=2e-16 Score=120.00 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=92.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCC----------------CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
...+.++|+++|+.++|||||+++|++.... ....+..+.+. ....+......+.+||+||+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCH
Confidence 3456799999999999999999999852110 00112222222 33334334457889999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCch--hc-hhHHh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRV--VC-IFCDV 143 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~-~~~~~ 143 (165)
++|.......+..+|++++|+|++........ +.+..+... ++| +|+|+||+|+.+..... .. +....
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 98887777777889999999999874332221 222222222 667 67899999997432111 11 22222
Q ss_pred hhhc----ceeceeeecccccc
Q 031126 144 FSSI----ITLSHTHTHGHTNT 161 (165)
Q Consensus 144 ~~~~----~~i~~~~~s~~~~~ 161 (165)
+... ..++++.+||++|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHhCCCcCCccEEEeeccccc
Confidence 2221 13578999999874
No 235
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.71 E-value=2e-16 Score=123.41 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=81.3
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc-CCCCCCC-------------------CCceeeeEEEEEEEECCeEEEEEEEeC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN-KKFSNQY-------------------KATIGADFLTKEVQFEDRLFTLQIWDT 64 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~-~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (165)
..+..+|+|+|++++|||||+++|+. .+..... ....+.++......+....+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35678999999999999999999864 2111000 001122333333444455588999999
Q ss_pred CCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
||+.+|.......++.+|++|+|+|+.+..... ...++..... . ++|+++++||+|+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~---~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL----R---DTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh----c---CCCEEEEEECccccCC
Confidence 999988887778889999999999998742211 2223322211 1 7899999999999754
No 236
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.71 E-value=1.7e-16 Score=126.83 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=92.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC---------------------------------CCceeeeEEEEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY---------------------------------KATIGADFLTKEVQ 51 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 51 (165)
....++|+++|++++|||||+++|+...-.... .+..+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345789999999999999999999864321110 01111222222222
Q ss_pred ECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
. ....+.|+|+||++.|.......+..+|++++|+|+......+.... ...+ .... ..++++|.||+|+.+
T Consensus 101 ~--~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~-~~~~-----~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 T--PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIA-SLLG-----IRHVVLAVNKMDLVD 171 (632)
T ss_pred c--CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHH-HHhC-----CCeEEEEEEeccccc
Confidence 2 33567899999999887766667889999999999976533221111 1111 1111 357899999999975
Q ss_pred CCCchhchhHHhh----hh--cceeceeeeccccccCCC
Q 031126 132 GNSRVVCIFCDVF----SS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 132 ~~~~~~~~~~~~~----~~--~~~i~~~~~s~~~~~~~~ 164 (165)
.......+....+ .. ...+.++.+||++|.|.+
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 3222222111121 11 123458889999998865
No 237
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=113.84 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=102.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccch---hhccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLG---VAFYR 79 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~---~~~~~ 79 (165)
....+-++|.|++|||||++++..........++++......+..+++.. .+.+-|.||.- .-+.+. ...++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence 35678899999999999999999988766666665555544555555432 38888999921 111222 23457
Q ss_pred cccEEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 80 GADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 80 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
.|+..++|+|.+.+ ..++.++.+..++...... ..+.|.++|+||+|+++......+++++.+... ..+..|
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~--L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~---~V~pvs 348 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKG--LADRPALIVANKIDLPEAEKNLLSSLAKRLQNP---HVVPVS 348 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhh--hccCceEEEEeccCchhHHHHHHHHHHHHcCCC---cEEEee
Confidence 89999999999988 7788887777777654432 227899999999999754212223333333322 367778
Q ss_pred cccccCC
Q 031126 157 GHTNTHS 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
|+.+.+.
T Consensus 349 A~~~egl 355 (366)
T KOG1489|consen 349 AKSGEGL 355 (366)
T ss_pred eccccch
Confidence 8877654
No 238
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=4.2e-16 Score=119.63 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=95.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC--CC-----------------------------CCCCCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (165)
...+.++|+++|+.++|||||+.+|+..- .. +...+..+.+.... .+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~--~~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW--KF 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeE--EE
Confidence 45667999999999999999999997521 00 00112222333223 33
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhH------HHHHHHHHHHHHHcCCCCCCCCc-EEEEEe
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF------DNLNNWREEFLIQASPSDPDNFP-FVVLGN 125 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~n 125 (165)
......+.|+|+||+.+|.......+..+|++++|+|+...... ....+-+..+... ++| +|++.|
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-------gi~~iiv~vN 153 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-------GVKQMIVCIN 153 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-------CCCeEEEEEE
Confidence 44457889999999999988888889999999999999875310 1111111112111 555 789999
Q ss_pred CCCCCC--CCCch----hchhHHhhhhc----ceeceeeeccccccCC
Q 031126 126 KIDVDG--GNSRV----VCIFCDVFSSI----ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 126 K~Dl~~--~~~~~----~~~~~~~~~~~----~~i~~~~~s~~~~~~~ 163 (165)
|+|... ..... ..+....+... ..++++.+|+.+|.|.
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 999532 11111 11232323221 2477899999999876
No 239
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=3.6e-16 Score=110.06 Aligned_cols=113 Identities=22% Similarity=0.237 Sum_probs=73.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCC----------------c-------eeeeEE---------------EEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------T-------IGADFL---------------TKEVQ 51 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----------------~-------~~~~~~---------------~~~~~ 51 (165)
||+++|+.++|||||+++|..+.+...... + .+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997655321110 0 000000 01111
Q ss_pred ECCeEEEEEEEeCCCccccccchhhccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 52 FEDRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
.. ...+.++|+||++.|.......+. .+|++++|+|+........ ..++..+... ++|+++|.||+|+
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~-------~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL-------NIPVFVVVTKIDL 150 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEECccc
Confidence 12 256888999999988776655554 6899999999986543222 2223333222 7899999999998
Q ss_pred CCC
Q 031126 130 DGG 132 (165)
Q Consensus 130 ~~~ 132 (165)
.+.
T Consensus 151 ~~~ 153 (224)
T cd04165 151 APA 153 (224)
T ss_pred cCH
Confidence 654
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=1.8e-16 Score=123.59 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=81.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CC------------C-------CCceeeeEEEEEEEECCeEEEEEEEeCC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQ------------Y-------KATIGADFLTKEVQFEDRLFTLQIWDTA 65 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (165)
.+..+|+|+|++++|||||.++|+...-. .. . ....+..+......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 46789999999999999999999742110 00 0 0001122222223333445789999999
Q ss_pred CccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
|+.+|.......++.+|++|+|+|+++..... ...++..... . ++|+++++||+|+....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~---~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL----R---DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh----c---CCCEEEEEECCcccccC
Confidence 99999887888899999999999998753222 2222222211 1 88999999999997653
No 241
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=7.1e-16 Score=104.44 Aligned_cols=117 Identities=25% Similarity=0.282 Sum_probs=81.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 74 (165)
.+...-|+++|.+|+|||||||+|+++.--...+.+.|.+....-+.++++ +.++|.|| .+.+....
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345678999999999999999999997643334445555454444555553 77889999 45566666
Q ss_pred hhcccc---ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 75 VAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 75 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..|++. -.++++++|+..+....+. +.+..+... ++|+++|+||+|....
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~-------~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL-------GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCeEEEEEccccCCh
Confidence 677743 4688889999876544322 223333222 8999999999999875
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=7.1e-16 Score=124.26 Aligned_cols=118 Identities=18% Similarity=0.093 Sum_probs=82.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCC-----C-------------CCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-----Q-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..+..||+|+|++++|||||+++|+...-.. . ..+..+.+.....+...+ ..+.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 3457899999999999999999997421110 0 011222333334444444 7899999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+.++.......++.+|++++|+|+.+....+...- +..+... ++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~~-------~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETV-WRQANRY-------EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHH-HHHHHHc-------CCCEEEEEECCCCCCC
Confidence 99888888888999999999999988655443322 2222221 7899999999999865
No 243
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=5.1e-16 Score=114.76 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=102.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC-------------------------------CCCCCCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 52 (165)
...+.++++++|+.++|||||+-+|+..-- .+.+.+ +.+.......+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEe
Confidence 456789999999999999999999976311 111112 23333333444
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHH-----HHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-----NNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
.-+.+.++++|+||+.+|-.....-+.+||++++|+|+...+...-+ -+-...+.+.+. -..+|++.||.
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKM 155 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKM 155 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcc
Confidence 44557899999999999999999999999999999999986422211 112233333333 34689999999
Q ss_pred CCCCCCCchhch---hHHhhhhc-----ceeceeeeccccccCCCC
Q 031126 128 DVDGGNSRVVCI---FCDVFSSI-----ITLSHTHTHGHTNTHSNQ 165 (165)
Q Consensus 128 Dl~~~~~~~~~~---~~~~~~~~-----~~i~~~~~s~~~~~~~~~ 165 (165)
|+.+-+.....+ ....+.+. ..+.++.+||-.|.|..+
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 998743222221 11112211 247799999999998753
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=9.6e-16 Score=116.32 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=93.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.....++|+++|+.++|||||+++|+.... .....+..+.+.. ...+......+.++|+||+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCH
Confidence 346679999999999999999999986311 0011222223332 2333334457889999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEE-EEEeCCCCCCCCCchh---c-hhHH
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSRVV---C-IFCD 142 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~---~-~~~~ 142 (165)
..|.......+..+|++++|+|+........ .+.+..+... ++|++ ++.||+|+.+.. +.. . +...
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~-~~~~~~~~~i~~ 156 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDE-ELLELVEMEVRE 156 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc-------CCCEEEEEEeecCCcchH-HHHHHHHHHHHH
Confidence 8888777777899999999999987533222 1222222222 67865 689999997421 111 1 2222
Q ss_pred hhhhc----ceeceeeeccccccC
Q 031126 143 VFSSI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 143 ~~~~~----~~i~~~~~s~~~~~~ 162 (165)
.+... ..++++.+||++|.+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccC
Confidence 22221 236788899988764
No 245
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=6.8e-16 Score=106.88 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhc-----cc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR 79 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 79 (165)
+++|+++|.+|+|||||+|.+.+...........+. ......+. ......+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543322222110 00001111 1112368999999965432222222 56
Q ss_pred cccEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 80 GADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
.+|+++++.+.. +.. -..|+..+... ..|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh-------CCCEEEEEecccchh
Confidence 788888874422 222 23444444443 669999999999954
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.9e-16 Score=120.31 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--RG 80 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 80 (165)
.+++++|.||+|||||.|++++.+......+..+.+-....+.+.+. .+.+.|.||...... ....++ ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 56999999999999999999998877666777777777777777774 477889999543322 222233 46
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|+++-|+|+++.+.--.+ ..++... +.|++++.|++|+.+. +-+....+.+.+...++.+.++|++|
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLlE~-------g~p~ilaLNm~D~A~~--~Gi~ID~~~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLLEL-------GIPMILALNMIDEAKK--RGIRIDIEKLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHHHc-------CCCeEEEeccHhhHHh--cCCcccHHHHHHHhCCCEEEEEeecC
Confidence 7999999999985443222 2233333 8899999999999887 77778888999999999999999999
Q ss_pred cCC
Q 031126 161 THS 163 (165)
Q Consensus 161 ~~~ 163 (165)
.+.
T Consensus 150 ~G~ 152 (653)
T COG0370 150 EGL 152 (653)
T ss_pred CCH
Confidence 873
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=6.4e-16 Score=124.65 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=82.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-------------CCC-----CCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------NQY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
....||+|+|+.++|||||+++|+..... ... ....+.......+.. ....+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCCc
Confidence 45789999999999999999999853210 000 011111111222333 3478999999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+|...+..+++.+|++++|+|+++.........|. .+... ++|+++|+||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~-------~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY-------GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc-------CCCEEEEEECCCCCCC
Confidence 999888889999999999999999876665443332 22221 7899999999999865
No 248
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=112.08 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=100.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC---------ccccccchhh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---------QERFQSLGVA 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---------~~~~~~~~~~ 76 (165)
.....|.++|.+|+|||||+|++.+.........+.+.+.....+.+.+ ...+.+.||.| .+.|++...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4578899999999999999999998877655556666677777777664 24566779999 222333322
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
....+|.++.|+|++++...+.+.....-+...... ++|+|+|.||+|+.... .......... + ..+..|
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~----~~p~i~v~NKiD~~~~~--~~~~~~~~~~---~-~~v~iS 337 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD----EIPIILVLNKIDLLEDE--EILAELERGS---P-NPVFIS 337 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC----CCCEEEEEecccccCch--hhhhhhhhcC---C-CeEEEE
Confidence 235699999999999996666665555544444332 78999999999987652 2111111111 2 477888
Q ss_pred cccccCC
Q 031126 157 GHTNTHS 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
|++|.+.
T Consensus 338 A~~~~gl 344 (411)
T COG2262 338 AKTGEGL 344 (411)
T ss_pred eccCcCH
Confidence 8888764
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=2.2e-15 Score=115.56 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=78.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC------CC----------CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK------KF----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
..+.++|+++|+.++|||||+++|.+. .. .+...+..+.+... ..+......+.++|+||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAH--VEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeE--EEEcCCCeEEEEEECCCcc
Confidence 456799999999999999999999621 10 01111233333333 3343444678899999999
Q ss_pred ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCC
Q 031126 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG 131 (165)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 131 (165)
.|.......+..+|++++|+|+......+. .+.+..+... ++| +|++.||+|+.+
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~-------gip~iIvviNKiDlv~ 191 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV-------GVPSLVVFLNKVDVVD 191 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEeeccCC
Confidence 887777777788999999999986533222 1112222221 678 578999999975
No 250
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.66 E-value=7.3e-16 Score=124.55 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=83.4
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCC---------------CCCC---CCCceeeeEEEEEEEECCeEEEEEEEe
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKK---------------FSNQ---YKATIGADFLTKEVQFEDRLFTLQIWD 63 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (165)
+.......||+|+|+.++|||||+++|+... +... +..+...........+.+..+.+.+||
T Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 3455678999999999999999999997531 1100 111222222222233556678999999
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
|||+.+|.......++.+|++++|+|+......+....|.. .... +.|+++|+||+|....
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALKE-------NVKPVLFINKVDRLIN 153 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHHc-------CCCEEEEEEChhcccc
Confidence 99999988888888999999999999987533332222221 1111 6788999999998653
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.8e-15 Score=114.01 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+..=|+++|+...|||||+..+........-.-..+.......+..+. ..-.++|+|||||+.|..+..+-..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445689999999999999999998877654444444455555554431 2247889999999999999988889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh---hhc--ceeceeeeccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF---SSI--ITLSHTHTHGHTN 160 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~--~~i~~~~~s~~~~ 160 (165)
||+++++.--.+.+ +.+...... ++|+++..||+|.++.++..+....+.. .+. -.+.++..||++|
T Consensus 84 LVVa~dDGv~pQTi----EAI~hak~a----~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 84 LVVAADDGVMPQTI----EAINHAKAA----GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEccCCcchhHH----HHHHHHHHC----CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 99999985333222 222222211 8999999999999987654444222222 111 2267999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+.+
T Consensus 156 ~Gi~ 159 (509)
T COG0532 156 EGID 159 (509)
T ss_pred CCHH
Confidence 8864
No 252
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.65 E-value=1.4e-15 Score=98.62 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc----cccccchhhccccccEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCC 84 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~~~~ 84 (165)
-||+++|+.|||||||+++|.+.+.. +..|.. +.+.+ .++||||. ..+..........||.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 48999999999999999999887642 222221 11222 34799993 33333333445689999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++.|++++.+.- -..+...+ +.|+|=|.||+|+.... ..++...+.+...-.-..++.|+.+|.++
T Consensus 68 ~ll~dat~~~~~~-----pP~fa~~f------~~pvIGVITK~Dl~~~~-~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 68 LLLQDATEPRSVF-----PPGFASMF------NKPVIGVITKIDLPSDD-ANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEEecCCCCCccC-----Cchhhccc------CCCEEEEEECccCccch-hhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999999864322 12333332 67999999999998432 33333334443332224588999988764
No 253
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.64 E-value=1.3e-15 Score=107.08 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=73.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCC-ceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----chhhccccccE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC 83 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 83 (165)
||+++|+.+|||||+.+.+..+-.+..+.. ..+.+.....+... ..+.+.+||.||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999998888776543322221 12222223333222 226899999999875544 34567899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
+|+|+|+.+.+-.+.+..+...+....... .+..+.++..|.|+..+.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HH
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHH
Confidence 999999995554455544444333322211 178899999999997653
No 254
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=6.7e-15 Score=118.66 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=82.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC------------------CCCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..+.+||+|+|++++|||||+++|+...-. ....+..+.+.....+..++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 346789999999999999999999752110 00122233333344444444 6789999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+.++...+...++.+|++++|+|+......... ..+..+... ++|+|+++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~-------~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY-------GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECCCCCCC
Confidence 988888888889999999999999876433322 222222221 7899999999999865
No 255
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=4e-15 Score=119.94 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC--CCCC---C-------------CCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSN---Q-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..+..||+|+|++++|||||+++|+.. .... . ..+..+.+.....+...+ ..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 456789999999999999999999741 1100 0 122233333344444444 6788899999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
+.+|.......+..+|++++|+|+......+...-| ..+... ++|+|++.||+|+....
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~-------~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY-------KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc-------CCCEEEEEECCCCCCCC
Confidence 988877777788999999999999876444432222 222222 77999999999998653
No 256
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7e-16 Score=98.44 Aligned_cols=149 Identities=19% Similarity=0.324 Sum_probs=105.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+-.+++++|.-|+|||++..++.-++.. ...++.+.+. .++.+ +...+.+||..|+-..+..|+.|+.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5689999999999999999998877653 2234444333 33333 55899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchh---HHhhhhcceeceeeeccccccCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIF---CDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|.+++........ ++..++.+....+..+++++||.|......+-+... .+.+++. ....++.||.+|.+.
T Consensus 92 VVDssd~dris~a~~---el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGV---ELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGL 167 (182)
T ss_pred EEeccchhhhhhhHH---HHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh-eeEEEeeccccccCC
Confidence 999999877655443 333333333344778899999999976532222211 1222222 267899999998876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 168 d 168 (182)
T KOG0072|consen 168 D 168 (182)
T ss_pred c
Confidence 4
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=103.02 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc-------ccccchhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 80 (165)
-.+++++|.|++|||||++.|++........++++.+..+..+++++ ..+++.|+||.- ..........+.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 36899999999999999999999988777778887888888888888 788899999821 122345566799
Q ss_pred ccEEEEEEeCCChhh
Q 031126 81 ADCCVLVYDVNSMKS 95 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s 95 (165)
||.+++|+|+.....
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEecCCChh
Confidence 999999999986554
No 258
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-15 Score=98.41 Aligned_cols=124 Identities=22% Similarity=0.378 Sum_probs=94.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.-|++++|..|+|||||++.+.+.......+ |. ......+.+.+ ..++.+|..|+..-+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP-Tl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP-TL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCC-Cc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 345789999999999999999998876543322 21 11123344555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV 137 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (165)
+.+|+.+.+.+.+...-++.+....... +.|+++.+||+|.+...++..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la---~vp~lilgnKId~p~a~se~~ 141 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLA---TVPFLILGNKIDIPYAASEDE 141 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHh---cCcceeecccccCCCcccHHH
Confidence 9999999999988765555544433222 899999999999988753333
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.3e-14 Score=110.47 Aligned_cols=147 Identities=21% Similarity=0.141 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+++.=|.|+|+...|||||+..|.+......-.- |.....+...+. ++ -.++|.||||+.-|..+..+-..-+|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 4567799999999999999999998876533222 222333444443 44 567788999999999999888889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----h-cceeceeeeccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----S-IITLSHTHTHGH 158 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~-~~~i~~~~~s~~ 158 (165)
+++|+.++|.--.+. .+.|..... . ++|+|+..||||.+..+...+.+...... + --++.++..||+
T Consensus 228 vVLVVAadDGVmpQT----~EaIkhAk~-A---~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQT----LEAIKHAKS-A---NVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEEccCCccHhH----HHHHHHHHh-c---CCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 999999998533222 222222221 1 89999999999998875444442221111 1 134568999999
Q ss_pred cccCC
Q 031126 159 TNTHS 163 (165)
Q Consensus 159 ~~~~~ 163 (165)
+|.|.
T Consensus 300 ~g~nl 304 (683)
T KOG1145|consen 300 TGENL 304 (683)
T ss_pred cCCCh
Confidence 99885
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.59 E-value=4e-14 Score=104.19 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAGQ- 67 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~- 67 (165)
|.++|.|++|||||+|++++........++.+.+....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998875433223322222221111 122 3367999999996
Q ss_pred ---cccccchhh---ccccccEEEEEEeCC
Q 031126 68 ---ERFQSLGVA---FYRGADCCVLVYDVN 91 (165)
Q Consensus 68 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 91 (165)
+....+... .++.||++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 378999999999997
No 261
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.58 E-value=1.4e-14 Score=111.21 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=91.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceeeeEEEEEE---------------EEC------------
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEV---------------QFE------------ 53 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------ 53 (165)
.++..++|.++|+.++|||||+.+|..... .+...+..+.+...... .+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346779999999999999999999986432 11111111111100000 000
Q ss_pred C----eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 54 D----RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 54 ~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
+ ....+.++|+||++.|-......+..+|++++|+|+..+. ..+.. +.+. +..... -.++|+|.||+|
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~-i~~~lg-----i~~iIVvlNKiD 182 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLA-AVEIMK-----LKHIIILQNKID 182 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHH-HHHHcC-----CCcEEEEEeccc
Confidence 0 0136789999999999888888888999999999999742 22111 2121 222221 236899999999
Q ss_pred CCCCCCchhc----hhHHhhhh--cceeceeeeccccccCC
Q 031126 129 VDGGNSRVVC----IFCDVFSS--IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 129 l~~~~~~~~~----~~~~~~~~--~~~i~~~~~s~~~~~~~ 163 (165)
+.+. .... +..+.+.. ....+++..||++|.|.
T Consensus 183 lv~~--~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 183 LVKE--AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNI 221 (460)
T ss_pred ccCH--HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCH
Confidence 9753 2222 11111111 13457899999999875
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=5.6e-15 Score=111.45 Aligned_cols=156 Identities=14% Similarity=0.055 Sum_probs=114.0
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcc--
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY-- 78 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-- 78 (165)
||+..+....++++|.|++|||||++.+........+.++++..++...+.+.. ..++++||||.-+.-......+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHH
Confidence 577888999999999999999999999999988777777777777777766555 6788999999433221111111
Q ss_pred -------ccccEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC--CchhchhHHhhhhc
Q 031126 79 -------RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVCIFCDVFSSI 147 (165)
Q Consensus 79 -------~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~ 147 (165)
+--.+++|+.|.+. ..|.+.--.++..|..++. ++|.|+|+||+|+.... .+.-.+..+.+.+.
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence 22357889999874 5777777777888888776 88999999999986542 22233555666666
Q ss_pred ceeceeeeccccccCC
Q 031126 148 ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 148 ~~i~~~~~s~~~~~~~ 163 (165)
..+.+++.|..+..++
T Consensus 314 ~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGV 329 (620)
T ss_pred cCceEEEecccchhce
Confidence 6667788887776543
No 263
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.58 E-value=3e-14 Score=98.61 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCC--CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------chh----
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGV---- 75 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~---- 75 (165)
++|+++|.+|+|||||+|++++........ ...+...........+ ..+.++||||-.+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 489999999999999999999876543321 1222333333334444 5788899999443321 111
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.....+|++++|+++.+ .+.. ....+..+...+... . -.++++|.|+.|....
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~-~-~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEK-V-LDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChH-h-HhcEEEEEECccccCC
Confidence 12356899999999886 3322 233344444443311 0 2488999999998654
No 264
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.58 E-value=1.1e-14 Score=119.44 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=82.6
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC----------------CCceeeeEEEEEEEE-------------
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVQF------------- 52 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~------------- 52 (165)
+....+..||+|+|+.++|||||+++|+...-.... .+..+.......+.+
T Consensus 13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 345677899999999999999999999864321000 011111111111211
Q ss_pred -CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 53 -EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
.+....+.++||||+.+|.......++.+|++|+|+|+..........-|.. .... ++|++++.||+|..
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~-------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE-------RIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC-------CCCEEEEEECCccc
Confidence 1235778999999999999988888999999999999987644333222222 2221 78999999999997
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5e-15 Score=104.45 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=82.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEE-EEECCeEEEEEEEeCCCccc-------cccchhhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE-VQFEDRLFTLQIWDTAGQER-------FQSLGVAF 77 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~ 77 (165)
..+++++++|.+|+||||+||++..++..+...-..+.+..... ..+++ -.+.+||+||-.+ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 46799999999999999999999977665443222222221111 12233 4689999999443 66667777
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+...|.++.++++.++.---. ..++..+..... +.+++++.|.+|...+
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEP 163 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhcc
Confidence 889999999999998643332 234444444443 5799999999998654
No 266
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=2.2e-13 Score=99.02 Aligned_cols=127 Identities=16% Similarity=0.132 Sum_probs=74.8
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh---hc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV---AF 77 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---~~ 77 (165)
+..+.+.++|+++|.+|+||||++|++++....... ..+.+...........+ ..+.+|||||..+...... ..
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 445667899999999999999999999987643211 11111122222223344 6799999999554321111 11
Q ss_pred c------ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 78 Y------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 78 ~------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+ ...|++++|...+....-+.-...++.+...+.. .. -.+.|+|.|++|....
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~i-w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DI-WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hh-hccEEEEEECCccCCC
Confidence 1 2589999996655321111222334444444321 11 3478999999997643
No 267
>PTZ00416 elongation factor 2; Provisional
Probab=99.56 E-value=2.2e-14 Score=117.54 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=80.6
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCC----------------CCCceeeeEEEEEEEEC--------CeEEE
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------------YKATIGADFLTKEVQFE--------DRLFT 58 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~ 58 (165)
.......||+|+|+.++|||||+++|+...-... ..+..+.......+.+. ++...
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL 93 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence 3456678999999999999999999986321100 00111111111122222 22567
Q ss_pred EEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.++||||+.+|.......++.+|++|+|+|+..........- +..+... ++|+|++.||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~-~~~~~~~-------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV-LRQALQE-------RIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHH-HHHHHHc-------CCCEEEEEEChhhh
Confidence 8999999999998888888999999999999987644333222 2222221 77999999999997
No 268
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=4.1e-14 Score=101.14 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=81.0
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc------------cc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER------------FQ 71 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------------~~ 71 (165)
...+..+|+++|.||+|||||.|.+++......+....+.... ....+......+.|+||||.-. +-
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 3467899999999999999999999999987766554433322 2222334446889999999211 11
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+.....+..||.+++++|+++....-. ...+..+.... ++|-|+|.||.|+...
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchh
Confidence 222345678999999999996322111 12233333322 7799999999998654
No 269
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=2.8e-13 Score=96.66 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=74.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---L------ 73 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~------ 73 (165)
..+..++|+++|.+|+|||||+|++++........ ...+..........++ ..+.+|||||-.+... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 44567999999999999999999999876543321 1122222222233344 6789999999544311 0
Q ss_pred -hhhccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 74 -GVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 74 -~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
...+++ ..+++++|..++....-......++.+...+.. .. -.++++|.||+|...+.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~i-~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-SI-WRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-hh-HhCEEEEEeCCccCCCC
Confidence 111222 568888887666432111222334444443321 11 24799999999986543
No 270
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.53 E-value=1.3e-13 Score=103.55 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=103.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--------------CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (165)
....||+|+.+...|||||+..|+.+.-. ..-...-+.++..+...+....+.+.++||||+.+|.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 35689999999999999999999875321 1111223455566666666666899999999999999
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhH-Hhh------
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFC-DVF------ 144 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~------ 144 (165)
......++-.|++++++|+....-.+. ...++.-... +.+-|+|.||+|.+...+..+-... ..|
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~~-------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALAL-------GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHHc-------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999987432221 1111211111 5566899999999988655444222 222
Q ss_pred hhcceeceeeeccccccC
Q 031126 145 SSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 145 ~~~~~i~~~~~s~~~~~~ 162 (165)
.+..+.+.+..||+.|+-
T Consensus 155 deQLdFPivYAS~~~G~a 172 (603)
T COG1217 155 DEQLDFPIVYASARNGTA 172 (603)
T ss_pred hhhCCCcEEEeeccCcee
Confidence 344666788888888764
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6e-14 Score=95.41 Aligned_cols=122 Identities=18% Similarity=0.289 Sum_probs=84.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccc---ccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD 82 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~ 82 (165)
.....|+++|+.+||||+|.-.|..+.+.....+ .......+.++.. .+.++|.||++..+.....+++ .+-
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence 3446899999999999999999998854332222 2223344444443 3788899999999887777776 789
Q ss_pred EEEEEEeCC-ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 83 CCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 83 ~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
++++|+|+. ......+..+++-.+.-.... ....+|+++++||.|+.-..
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcC
Confidence 999999975 344445555555554443321 12278999999999996543
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1e-13 Score=100.49 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=93.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc----cccccchh---hcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGV---AFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~---~~~~~ 80 (165)
..-|-++|.|++|||||++.+..........++++....-..+...+ .-.|.+-|.||- ..=..+.. ..++.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 34577999999999999999999987766666655444444444322 235777799992 11112222 34578
Q ss_pred ccEEEEEEeCCChh---hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceee-ec
Q 031126 81 ADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTH-TH 156 (165)
Q Consensus 81 ~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~-~s 156 (165)
|.+++.|+|++..+ ..++......++..... ...++|.++|+||+|+.... +....+.+.+.+........ .|
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--KLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH--HhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceeee
Confidence 99999999998544 24444444555544322 12278999999999965542 33334444444332211111 77
Q ss_pred cccccCC
Q 031126 157 GHTNTHS 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
+.++.+.
T Consensus 315 a~t~~g~ 321 (369)
T COG0536 315 ALTREGL 321 (369)
T ss_pred hhcccCH
Confidence 7776553
No 273
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.52 E-value=8.7e-14 Score=112.87 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=80.7
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCC-C---------------CCceeeeEE--EEEEEECCeEEEEEEEeC
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-Y---------------KATIGADFL--TKEVQFEDRLFTLQIWDT 64 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~D~ 64 (165)
....+..||+++|+.++|||||+++|+...-... . .+..+.... .......++...+.++||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 4456788999999999999999999975321100 0 000111111 111223445678999999
Q ss_pred CCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
||+.+|.......++.+|++++|+|+..........-|.. .... +.|.|++.||+|+..
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~-------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE-------RVKPVLFINKVDRLI 153 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc-------CCCeEEEEECchhhc
Confidence 9999998888888999999999999987543332222222 1211 567899999999863
No 274
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.5e-13 Score=102.80 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=103.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC-------------------------------CCCCCCCCceeeeEEEEEEEEC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK-------------------------------KFSNQYKATIGADFLTKEVQFE 53 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 53 (165)
....++++++|+.++|||||+-+++.. +..+.+.+ +.+.......++
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v~~~~fe 251 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDVKTTWFE 251 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEeeeEEEe
Confidence 346799999999999999999998752 11122222 333444444555
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHH-----HHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-----NWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-----~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
.....++++|.||+.+|-.....-...+|++++|+|++..+...... +-+..+.+.+. -..+|++.||.|
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKmD 326 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKMD 326 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEeeccc
Confidence 66678999999999999999988899999999999998643221111 12334444443 346899999999
Q ss_pred CCCCCCchhchhHHhhhhc---------ceeceeeeccccccCCCC
Q 031126 129 VDGGNSRVVCIFCDVFSSI---------ITLSHTHTHGHTNTHSNQ 165 (165)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~~~~~ 165 (165)
+.+=......+....+... ..+.++.+|+.+|.|.++
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 9764323333222222222 245799999999998753
No 275
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.50 E-value=7e-14 Score=89.47 Aligned_cols=113 Identities=27% Similarity=0.359 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776643322 2221 222334456788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++.+++.+++.+ |...+..... .+.|+++++||.|+.+. .... +. ....+.+.++++|.|+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~--~~~~---~~----~~~~~~~~s~~~~~~~ 114 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE--RQVA---TE----EGLEFAETSAKTPEEG 114 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh--CcCC---HH----HHHHHHHHhCCCcchh
Confidence 999999988765 7666554332 27889999999998543 2111 11 1123567778887764
No 276
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.1e-13 Score=102.86 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=84.3
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------- 75 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------- 75 (165)
-++.++|+|+|.||+|||||+|.|.+.+..-. ..+.++.|.....+.++| +.+.+.||.|-.+-.....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 35678999999999999999999999886533 334555677777777788 6677789999655111111
Q ss_pred -hccccccEEEEEEeC--CChhhHHHHHHHHHHHHHHcCC--CCCCCCcEEEEEeCCCCCCC
Q 031126 76 -AFYRGADCCVLVYDV--NSMKSFDNLNNWREEFLIQASP--SDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 -~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~ 132 (165)
..++.+|++++|+|+ ++-.+...+.+.+.....-+.. ..-.+.|+|++.||.|+...
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 235789999999999 3333333333333333221111 01125799999999999765
No 277
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=5.2e-13 Score=107.68 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=75.3
Q ss_pred EcCCCCChHHHHHHHhcCCCCCC------------------CCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh
Q 031126 14 LGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75 (165)
Q Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (165)
+|++++|||||+++|+...-... ..+..+.......+...+ ..+.+||+||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999965321100 011222223333444444 7899999999998877788
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..+..+|++++|+|++..........|. .+... ++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~-------~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY-------GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc-------CCCEEEEEECCCCCCC
Confidence 8899999999999998866554433332 22221 7899999999999764
No 278
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.46 E-value=2.3e-12 Score=93.51 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=68.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCC----------CCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------- 69 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------- 69 (165)
.++|+|+|.+|+|||||||.|.+....... ..+.........+.-++..+.+.++||||-.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987543331 12222333334445567888999999999110
Q ss_pred ----------cccchh-------hcc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 70 ----------FQSLGV-------AFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 70 ----------~~~~~~-------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
|..... ..+ ...|++||+++.+...--..-...++. +.. .+++|.|..|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~---Ls~-----~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKR---LSK-----RVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHH---HTT-----TSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHH---hcc-----cccEEeEEeccccc
Confidence 000000 001 246899999998753221111123333 332 78999999999986
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 156 t~ 157 (281)
T PF00735_consen 156 TP 157 (281)
T ss_dssp -H
T ss_pred CH
Confidence 54
No 279
>PRK09866 hypothetical protein; Provisional
Probab=99.44 E-value=4.5e-12 Score=99.34 Aligned_cols=101 Identities=23% Similarity=0.212 Sum_probs=60.5
Q ss_pred EEEEEeCCCcccc-----ccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 58 TLQIWDTAGQERF-----QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 58 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+.|+||||-... .......+..+|++++|+|.....+..+. .....+..... ..|+++|+||+|+.+.
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K-----~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQ-----SVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCC-----CCCEEEEEEcccCCCc
Confidence 4678899995431 22344568899999999999875443331 22333322211 3599999999999643
Q ss_pred CCchhc---hhHH-hhh--hcceeceeeeccccccCCC
Q 031126 133 NSRVVC---IFCD-VFS--SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 133 ~~~~~~---~~~~-~~~--~~~~i~~~~~s~~~~~~~~ 164 (165)
...... ++.. .+. .......+.+||+.|.|.+
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid 342 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLAN 342 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH
Confidence 221112 2221 111 1123468889999998865
No 280
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.43 E-value=2.6e-13 Score=100.98 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=58.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhc-----
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----- 77 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----- 77 (165)
..+++|+|+|++|+|||||||.|.+-+..+.....+|. +.....+ ....--.+.+||.||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45789999999999999999999763322221111111 1111111 11221258999999965433333334
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
+...|.+|++.+..-... -......+.+. ++|+++|-||+|.
T Consensus 112 ~~~yD~fiii~s~rf~~n---dv~La~~i~~~-------gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN---DVQLAKEIQRM-------GKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESSS--HH---HHHHHHHHHHT-------T-EEEEEE--HHH
T ss_pred ccccCEEEEEeCCCCchh---hHHHHHHHHHc-------CCcEEEEEecccc
Confidence 356788888766442221 22334455544 7899999999996
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.43 E-value=9.8e-13 Score=92.07 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCC--CceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-------hh----
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GV---- 75 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~---- 75 (165)
+||+++|.+|+||||++|.+++........ ...+..........++ ..+.++||||-.+.... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887654332 2223334444446667 56888999993221111 11
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
....+.|+++||+... +.+..+ ...+..+...+... . -..++||.|..|....
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~-~-~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEE-I-WKHTIVVFTHADELED 131 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGG-G-GGGEEEEEEEGGGGTT
T ss_pred hccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHH-H-HhHhhHHhhhcccccc
Confidence 1235689999999998 333322 22333444444321 1 2468999999987665
No 282
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.41 E-value=5.2e-12 Score=85.14 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=43.5
Q ss_pred EEEEeCCCccc----cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 59 LQIWDTAGQER----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 59 ~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
+.|+|+||-.. .......+++.+|++++|.+++...+-.+...+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 78999999432 3345667779999999999999876655555544444333 44589999984
No 283
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4.8e-12 Score=92.28 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=98.4
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCC----------CCC---------------------CCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------NQY---------------------KATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~~~---------------------~~~~~~~~~~~~~~~ 52 (165)
+....+|++-+|...-||||||-||+...-. ..+ .+..+.++......+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 3456799999999999999999999874210 000 011122222222333
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.-.+-+|.+-||||++.|-..+..-...||++|+++|+...-..+. +-+..+..++. =..+++..||+||.+-
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QT--rRHs~I~sLLG-----IrhvvvAVNKmDLvdy 154 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQT--RRHSFIASLLG-----IRHVVVAVNKMDLVDY 154 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHh--HHHHHHHHHhC-----CcEEEEEEeeeccccc
Confidence 4444578889999999999998888889999999999965321111 11222323332 3368999999999886
Q ss_pred CCchhchhHH---hhh---hcceeceeeeccccccCC
Q 031126 133 NSRVVCIFCD---VFS---SIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 133 ~~~~~~~~~~---~~~---~~~~i~~~~~s~~~~~~~ 163 (165)
......+... .|. ....+.++..||..|.|+
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 5444332222 222 224457889999998885
No 284
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.1e-12 Score=102.27 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=88.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC-----CCC-------------CCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-----NQY-------------KATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..+..||.|+|+.++|||||..+++...-. +.. .+..+.......+...+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 457899999999999999999998753211 000 11222222233333332 48899999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC 138 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 138 (165)
|-+|-......++-+|++++|+|+...-..+.-.-|.+... . ++|.+++.||+|....+.....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~-~-------~vp~i~fiNKmDR~~a~~~~~~ 149 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK-Y-------GVPRILFVNKMDRLGADFYLVV 149 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh-c-------CCCeEEEEECccccccChhhhH
Confidence 99999999999999999999999997654444333443322 1 8899999999999776433333
No 285
>PTZ00258 GTP-binding protein; Provisional
Probab=99.39 E-value=8.8e-12 Score=93.75 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=59.4
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCcc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQE 68 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~ 68 (165)
+....++|.|+|.||+|||||+|+|.+........+..+.+.....+...+. ...+.++|+||-.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 4456789999999999999999999887755444454444444444443322 1348899999933
Q ss_pred c-------cccchhhccccccEEEEEEeCC
Q 031126 69 R-------FQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 69 ~-------~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
. ........++.+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1112223457899999999973
No 286
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=6.4e-12 Score=92.91 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=58.4
Q ss_pred EEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh-------hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
.+.+.+||++|+...+..|..++.+++++++|+|.++-. ....+.+-+..+...+......++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 477999999999999999999999999999999998631 1133444444444444444445899999999999
Q ss_pred CCCC
Q 031126 129 VDGG 132 (165)
Q Consensus 129 l~~~ 132 (165)
+..+
T Consensus 240 ~f~~ 243 (317)
T cd00066 240 LFEE 243 (317)
T ss_pred HHHH
Confidence 7553
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=2e-11 Score=86.22 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=79.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
..+..|+++|.+|+|||||++.+.............+. . .+ .......+.++|+||.. .......+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 44678999999999999999999864211111111111 1 11 11233567888999854 22234468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCchh--c-hhHHhhh--hcceeceeeecccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV--C-IFCDVFS--SIITLSHTHTHGHT 159 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~--~-~~~~~~~--~~~~i~~~~~s~~~ 159 (165)
+++|+......... ..+..+... +.| +++|+||.|+........ . +..+.+. -......+..||++
T Consensus 109 lviDa~~~~~~~~~-~i~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 109 LLIDASFGFEMETF-EFLNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred EEEecCcCCCHHHH-HHHHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 99999865433221 222222211 557 456999999975321111 1 1111121 12234677778776
Q ss_pred ccC
Q 031126 160 NTH 162 (165)
Q Consensus 160 ~~~ 162 (165)
..+
T Consensus 181 ~~~ 183 (225)
T cd01882 181 HGR 183 (225)
T ss_pred CCC
Confidence 643
No 288
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=1.5e-11 Score=91.73 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChh-------hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
+.+.+||.+|+...+..|..++.+++++++|+|+++-. ....+.+-+..+...+......+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 66899999999999999999999999999999998621 11223333444444444444458999999999998
Q ss_pred CC
Q 031126 130 DG 131 (165)
Q Consensus 130 ~~ 131 (165)
..
T Consensus 264 ~~ 265 (342)
T smart00275 264 FE 265 (342)
T ss_pred HH
Confidence 54
No 289
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.34 E-value=1.2e-11 Score=102.39 Aligned_cols=101 Identities=28% Similarity=0.338 Sum_probs=67.4
Q ss_pred ChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC--e--------------EEEEEEEeCCCccccccchhhccccccE
Q 031126 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED--R--------------LFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 20 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+||||+.++.+.+....-....+..+....+..+. + .-.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 49999999998876543333333222222222211 0 0138999999999998887777888999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 84 CVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 84 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
+++|+|+++ +.+++.+. .+... ++|+++|+||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~~-------~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQY-------KTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHHc-------CCCEEEEEECCCCcc
Confidence 999999986 34443332 22111 679999999999964
No 290
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.4e-12 Score=97.35 Aligned_cols=122 Identities=25% Similarity=0.285 Sum_probs=86.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCce---------------eeeEE--EEEE---EECCeEEEEE
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---------------GADFL--TKEV---QFEDRLFTLQ 60 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~~--~~~~---~~~~~~~~~~ 60 (165)
|+......++|.++|+-.+|||+|+..|..+..+....... +.... ..++ ...++.+.++
T Consensus 121 l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~n 200 (971)
T KOG0468|consen 121 LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMN 200 (971)
T ss_pred hccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeee
Confidence 35567788999999999999999999998765432211110 11111 1111 1246677899
Q ss_pred EEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
++||||+-+|.......++.+|++++++|+...-.+..-+- ++.. ... +.|+.+|.||.|..
T Consensus 201 ilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikha---iq~----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 201 ILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHA---IQN----RLPIVVVINKVDRL 262 (971)
T ss_pred eecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHH---Hhc----cCcEEEEEehhHHH
Confidence 99999999999999999999999999999998765543222 2221 111 88999999999963
No 291
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.32 E-value=3.5e-11 Score=85.22 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=44.9
Q ss_pred EEEEEEeCCCccc-------------cccchhhccc-cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEE
Q 031126 57 FTLQIWDTAGQER-------------FQSLGVAFYR-GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122 (165)
Q Consensus 57 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (165)
..+.++|+||-.. ...+...+++ ..+.+++|+|+.....-.........+... ..|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-------~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-------GERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-------CCcEEE
Confidence 3588999999531 1223345556 456888999987543333333444444332 779999
Q ss_pred EEeCCCCCCCC
Q 031126 123 LGNKIDVDGGN 133 (165)
Q Consensus 123 v~nK~Dl~~~~ 133 (165)
|+||+|..+..
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998753
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.31 E-value=2.1e-12 Score=80.84 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch----hhccccccEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----VAFYRGADCC 84 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~ 84 (165)
-|++++|..|||||||.+.+.+...- +..+.. +++... -.+|+||.......+ ......+|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 47999999999999999999876532 222221 122111 145999943322222 2334678999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++|-.++++++.- -.-+.... ..|+|=|.+|.|+++. ..++...+.+.+.-.-..++.|+.++.++
T Consensus 69 ~~v~~and~~s~f-----~p~f~~~~------~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 69 IYVHAANDPESRF-----PPGFLDIG------VKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeeecccCccccC-----Cccccccc------ccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 9999999875532 12222222 4569999999999975 67776667776666667888888877654
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.30 E-value=9.3e-11 Score=90.34 Aligned_cols=121 Identities=18% Similarity=0.352 Sum_probs=90.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
...+.+++.++|+.++|||.|++.|+++.+......+....+........++.-.+.+.|.+-. ......... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3456789999999999999999999999887755555555555566666666667777777643 222222222 67999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
++++||.+++.+++.+...+...... . ..|+++|++|+|+.+.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~-----~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL-Y-----KIPCLMVATKADLDEV 541 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc-c-----CCceEEEeeccccchh
Confidence 99999999999999887766554433 2 8899999999999765
No 294
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.7e-11 Score=86.31 Aligned_cols=151 Identities=19% Similarity=0.117 Sum_probs=93.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC-------CCCCCCceeeeEEEEEEE-------ECCeEEEEEEEeCCCccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------SNQYKATIGADFLTKEVQ-------FEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~D~~g~~~ 69 (165)
..+.++|+.++|+.++|||||.+++..-.. +....+..+.+.....+. ..++...+.++|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 456679999999999999999999975321 222223333444333322 245668899999999876
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc------hhHH
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC------IFCD 142 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~------~~~~ 142 (165)
.-........-.|..++|+|+.....-+.++.++ -++ + -...++|.||.|+..++.+... ...+
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~---~------c~klvvvinkid~lpE~qr~ski~k~~kk~~K 153 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL---L------CKKLVVVINKIDVLPENQRASKIEKSAKKVRK 153 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh---h------ccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence 6555444445669999999998654433333221 111 1 4467888899998776544433 2222
Q ss_pred hhhhc---ceeceeeeccccccCC
Q 031126 143 VFSSI---ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 143 ~~~~~---~~i~~~~~s~~~~~~~ 163 (165)
.+... -..+..+.|++.|+-.
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~ 177 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFK 177 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccc
Confidence 22221 2356788888888643
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.27 E-value=8.3e-11 Score=89.19 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG 66 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~g 66 (165)
++|.|+|.|++|||||+|+|++........++.+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765433333322222222111 1 1236789999999
Q ss_pred c----cccccchhhc---cccccEEEEEEeCC
Q 031126 67 Q----ERFQSLGVAF---YRGADCCVLVYDVN 91 (165)
Q Consensus 67 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 91 (165)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 3333444444 78999999999996
No 296
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.9e-11 Score=84.41 Aligned_cols=128 Identities=22% Similarity=0.350 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----chhhccccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGA 81 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 81 (165)
..||+++|.+|+||||+=..+..+-.. .....+.+.+.......+-| ...+.+||..|++.+-. .....++..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 468999999999999964433321111 11222333344433333332 26889999999884332 344567889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC 138 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 138 (165)
+++++|||+...+-..++..+...+...+..+. ...|.....|.|+.....+...
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP--~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP--EAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC--cceEEEEEeechhcccchHHHH
Confidence 999999999998877777776666655554321 5568899999999876544433
No 297
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.25 E-value=1.8e-10 Score=90.80 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=73.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------c----hhh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------L----GVA 76 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~----~~~ 76 (165)
..+|+++|.+|+||||++|.+++........ ...+..........++ ..+.++||||-.+... . ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4789999999999999999999876443322 1111222222223344 5788999999554321 1 111
Q ss_pred ccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 77 FYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 77 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
++. .+|++|+|..++......+-..++..+...+... . -..+|||.|+.|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-I-wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-I-WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-h-HcCEEEEEeCCccCCC
Confidence 223 4799999988764333222334566665555421 1 2468999999998753
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.7e-11 Score=87.68 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc-CCC-----------CCCCC--------CceeeeEEEEEEEECCeEEEEEEEeCC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN-KKF-----------SNQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTA 65 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~-~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (165)
.+...++|+-+|.+|||||-..|+- ++. ..... ..-+.......+.++...+.+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3457899999999999999998763 110 00000 011233334444444455888999999
Q ss_pred CccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
|+++|.....+.+..+|.+++|+|+....-.+. ..+...+... ++||+-+.||.|.....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR---~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLR---DIPIFTFINKLDREGRD 149 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhc---CCceEEEeeccccccCC
Confidence 999999998888999999999999987533332 2333444433 89999999999986643
No 299
>PRK13768 GTPase; Provisional
Probab=99.22 E-value=4.7e-11 Score=85.71 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=44.2
Q ss_pred EEEEEeCCCcccc---ccchhhcc---cc--ccEEEEEEeCCChhhHHHHH--HHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 58 TLQIWDTAGQERF---QSLGVAFY---RG--ADCCVLVYDVNSMKSFDNLN--NWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 58 ~~~~~D~~g~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
.+.+||+||+.+. +..+..++ .. ++++++++|+....+..... .|+........ ++|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~-----~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL-----GLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc-----CCCEEEEEEhH
Confidence 5789999997663 33333232 22 88999999997654433322 22222221111 78999999999
Q ss_pred CCCCC
Q 031126 128 DVDGG 132 (165)
Q Consensus 128 Dl~~~ 132 (165)
|+...
T Consensus 173 D~~~~ 177 (253)
T PRK13768 173 DLLSE 177 (253)
T ss_pred hhcCc
Confidence 99765
No 300
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.18 E-value=2.1e-10 Score=84.66 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=66.4
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC-------hhhHHHHHHHHHHHHHHcCCCCCCCCc
Q 031126 47 TKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS-------MKSFDNLNNWREEFLIQASPSDPDNFP 119 (165)
Q Consensus 47 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~p 119 (165)
...+.+.+ ..+.++|++||...+.-|...+.+++++|+|++.++ .+....+.+-+..+...+....+.+.+
T Consensus 187 e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts 264 (354)
T KOG0082|consen 187 EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS 264 (354)
T ss_pred EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence 33444444 678899999999999999999999999999999874 223344566677777777777777999
Q ss_pred EEEEEeCCCCCCC
Q 031126 120 FVVLGNKIDVDGG 132 (165)
Q Consensus 120 iilv~nK~Dl~~~ 132 (165)
+||+.||.||.++
T Consensus 265 iiLFLNK~DLFeE 277 (354)
T KOG0082|consen 265 IILFLNKKDLFEE 277 (354)
T ss_pred EEEEeecHHHHHH
Confidence 9999999999765
No 301
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.18 E-value=7.3e-10 Score=81.48 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=74.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEEeCCCcc------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------ 68 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------ 68 (165)
+.-.++|+++|++|+|||||+|.|........ ..++.........+.-++..+.++++||||--
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 34578999999999999999999987643222 12233334444444456777899999999911
Q ss_pred ------------ccccchh-------h-cc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeC
Q 031126 69 ------------RFQSLGV-------A-FY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (165)
Q Consensus 69 ------------~~~~~~~-------~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (165)
.++.... . .+ ...|+++|.+..+...--.-- +..+.+... .+.+|.|..|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D---Ie~Mk~ls~-----~vNlIPVI~K 171 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD---IEAMKRLSK-----RVNLIPVIAK 171 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH---HHHHHHHhc-----ccCeeeeeec
Confidence 1110000 0 11 246899999987753221111 223333322 7789999999
Q ss_pred CCCCCC
Q 031126 127 IDVDGG 132 (165)
Q Consensus 127 ~Dl~~~ 132 (165)
+|..-.
T Consensus 172 aD~lT~ 177 (373)
T COG5019 172 ADTLTD 177 (373)
T ss_pred cccCCH
Confidence 998654
No 302
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.17 E-value=4.7e-10 Score=81.36 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=67.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE--CCeEEEEEEEeCCCccccccchhhcccc--
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF--EDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 80 (165)
-+..-+|+++|+.++||||||.+|.+.+ ......+..+.+..++- -++-.++.+|-..|+..+..+....+..
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats 125 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS 125 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence 3456799999999999999999998776 23334445555444432 2344578899999988777766655532
Q ss_pred -c-cEEEEEEeCCChhhH-HHHHHHHH
Q 031126 81 -A-DCCVLVYDVNSMKSF-DNLNNWRE 104 (165)
Q Consensus 81 -~-~~~i~v~d~~~~~s~-~~~~~~~~ 104 (165)
+ -.+|++.|+++++.+ +.++.|..
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~ 152 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWAS 152 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHH
Confidence 2 377889999999655 55667654
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.17 E-value=8.2e-10 Score=82.98 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=71.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC----CCC------------CCCCCc---eeeeEEE---EEEE---ECCeEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK----KFS------------NQYKAT---IGADFLT---KEVQ---FEDRLFTL 59 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~ 59 (165)
-.-.+.|.|+|+.++|||||+|+|.+. +.. +.+.+. .+.+... ..++ .++-...+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 344688999999999999999999987 332 111111 1112211 1122 23445688
Q ss_pred EEEeCCCc-------------------cccccc----------hhhccc-cccEEEEEE-eCC----ChhhH-HHHHHHH
Q 031126 60 QIWDTAGQ-------------------ERFQSL----------GVAFYR-GADCCVLVY-DVN----SMKSF-DNLNNWR 103 (165)
Q Consensus 60 ~~~D~~g~-------------------~~~~~~----------~~~~~~-~~~~~i~v~-d~~----~~~s~-~~~~~~~ 103 (165)
.++|++|- ++|... ....+. .++..++|. |.+ .++.. +.-.+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999991 111111 112334 688888888 764 11222 2234566
Q ss_pred HHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 104 EEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 104 ~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
.++... ++|+++|.||+|-
T Consensus 174 ~eLk~~-------~kPfiivlN~~dp 192 (492)
T TIGR02836 174 EELKEL-------NKPFIILLNSTHP 192 (492)
T ss_pred HHHHhc-------CCCEEEEEECcCC
Confidence 666655 8899999999994
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.16 E-value=1.6e-10 Score=81.99 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+++.-|+++|..|||||||++||..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHH
Confidence 45678899999999999999999864
No 305
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.8e-10 Score=82.08 Aligned_cols=118 Identities=17% Similarity=0.284 Sum_probs=73.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCC---------CCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------- 68 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------- 68 (165)
-.++++++|++|.|||||||.|....+.. ....+.........+.-++-.+.++++||||-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 35899999999999999999987664332 112233344444445556777889999999911
Q ss_pred ---------cccc-------chhhccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 69 ---------RFQS-------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 69 ---------~~~~-------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
.++. ..+..+. ..|+++|.+..+...--..-...++.+ .. .+++|.|..|.|..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l---~~-----~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL---SK-----KVNLIPVIAKADTL 171 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH---hc-----cccccceeeccccC
Confidence 1110 0011122 579999999977542111111222322 22 78999999999986
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 54
No 306
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.3e-10 Score=82.80 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=76.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEECCeE------------------------------
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRL------------------------------ 56 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------ 56 (165)
..-|+++|+-..||||||+.|+.+.++... .+..+.+++...+.-+.+.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 456899999999999999999999886332 2333344444444322111
Q ss_pred ---------EEEEEEeCCCcc-----------ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCC
Q 031126 57 ---------FTLQIWDTAGQE-----------RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 116 (165)
Q Consensus 57 ---------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 116 (165)
-.++++|+||.- .|.....-+...+|.++++||....+--.+....+..+...
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~------- 210 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH------- 210 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-------
Confidence 127899999932 22233334468899999999987543333333334443322
Q ss_pred CCcEEEEEeCCCCCCC
Q 031126 117 NFPFVVLGNKIDVDGG 132 (165)
Q Consensus 117 ~~piilv~nK~Dl~~~ 132 (165)
.-.+-+|.||.|..+.
T Consensus 211 EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT 226 (532)
T ss_pred cceeEEEeccccccCH
Confidence 4467899999999876
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.14 E-value=6.6e-11 Score=84.06 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=36.5
Q ss_pred EEEEEeCCCccccccchhhcc--------ccccEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
.+.++|||||.++...+...- ...-++++++|+..-.+... +..++..+..+... +.|.|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 578899999988766555433 33457888999764322211 22222222221111 889999999999
Q ss_pred CCCC
Q 031126 129 VDGG 132 (165)
Q Consensus 129 l~~~ 132 (165)
+...
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9873
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.14 E-value=6.2e-10 Score=83.03 Aligned_cols=83 Identities=24% Similarity=0.152 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeE---------------EEEEEEeCCCcccc---
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQERF--- 70 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~--- 70 (165)
++|.++|.|++|||||+|++++........+..+.+.....+.+.+.. ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999887443333444334433333333321 25889999994321
Q ss_pred -cc---chhhccccccEEEEEEeCC
Q 031126 71 -QS---LGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 71 -~~---~~~~~~~~~~~~i~v~d~~ 91 (165)
.. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1223357899999999984
No 309
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.13 E-value=1.6e-10 Score=82.57 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=66.9
Q ss_pred cccccchhhccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFS 145 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~ 145 (165)
+.+..+.+.++.++|++++|+|++++. +++.+.+|+..+... ++|+++|+||+||.+. +... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~-------~i~~vIV~NK~DL~~~--~~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ-------NIEPIIVLNKIDLLDD--EDMEKEQLDIYR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEECcccCCC--HHHHHHHHHHHH
Confidence 556677777899999999999999877 899999998766431 7899999999999754 3332 4444454
Q ss_pred hcceeceeeeccccccCCC
Q 031126 146 SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 146 ~~~~i~~~~~s~~~~~~~~ 164 (165)
+ ....++++||++|.+++
T Consensus 95 ~-~g~~v~~~SAktg~gi~ 112 (245)
T TIGR00157 95 N-IGYQVLMTSSKNQDGLK 112 (245)
T ss_pred H-CCCeEEEEecCCchhHH
Confidence 4 45678999999998753
No 310
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.11 E-value=1.5e-09 Score=83.76 Aligned_cols=96 Identities=24% Similarity=0.389 Sum_probs=66.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccchhhccccc--
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGA-- 81 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~-- 81 (165)
....+|+|+|..++|||||+.+|.+.+ ....+.+.+|.+....-+ +....+.+|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 445799999999999999999997654 334455566655544322 2334789999988777777666555422
Q ss_pred --cEEEEEEeCCChhhHH-HHHHHHH
Q 031126 82 --DCCVLVYDVNSMKSFD-NLNNWRE 104 (165)
Q Consensus 82 --~~~i~v~d~~~~~s~~-~~~~~~~ 104 (165)
-.+|||+|.+.|+.+- .+..|+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~ 125 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLS 125 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHH
Confidence 4788999999987763 4555543
No 311
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.11 E-value=1.9e-10 Score=83.08 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=54.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERF----Q 71 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~----~ 71 (165)
+.|+|.|++|||||+|++++........++.+.+.....+.+.+. ...+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998765444444444444444444332 125899999993311 1
Q ss_pred cc---hhhccccccEEEEEEeCC
Q 031126 72 SL---GVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 72 ~~---~~~~~~~~~~~i~v~d~~ 91 (165)
.+ ....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 223357899999999873
No 312
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.1e-10 Score=79.13 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=81.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC----------------CCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK----------------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
+..+.+||..+|+.+.|||||...+..- ..++...+ +.++.....++.-..-.+...|+||+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCCh
Confidence 4567899999999999999998877531 11111122 34444444455444456778899999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 132 (165)
.+|-.+...-.-+.|+.|+|+.+++..-.+..... .+.+.. .+| ++++.||+|+.++
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv------Gvp~ivvflnK~Dmvdd 143 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV------GVPYIVVFLNKVDMVDD 143 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc------CCcEEEEEEecccccCc
Confidence 99999988888889999999999985433322111 111111 565 7889999999875
No 313
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=4.2e-09 Score=74.03 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=68.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc-------ccccchhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 80 (165)
-.||+++|-|.+|||||+..+..-+.......+++.+..+..+++++ -.+++.|.||.- ..........+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 47899999999999999999998776666666777777788888888 567888999932 122344455688
Q ss_pred ccEEEEEEeCCChhhHHH
Q 031126 81 ADCCVLVYDVNSMKSFDN 98 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~ 98 (165)
+|.+++++|++..+.-..
T Consensus 140 aDlilMvLDatk~e~qr~ 157 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQRE 157 (364)
T ss_pred ccEEEEEecCCcchhHHH
Confidence 999999999997665543
No 314
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.3e-09 Score=74.84 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCC---------CCCceeeeEEEEEEEECCeEEEEEEEeCCCc-----------
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------- 67 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------- 67 (165)
.+||+++|.+|.|||||+|++...+.... ...+.........+.-++-..+++++||||-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 58999999999999999999987654322 1223334444455555677778999999991
Q ss_pred -------cccccchh--------hcc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 68 -------ERFQSLGV--------AFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 68 -------~~~~~~~~--------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.|.+... ..+ ...++++|.+..+...-----.++++.+-. -+.++-|.-|.|-.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~--------vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE--------VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh--------hheeeeeEeecccc
Confidence 11111111 111 236888888888754211111223333322 45788899999965
Q ss_pred C
Q 031126 131 G 131 (165)
Q Consensus 131 ~ 131 (165)
-
T Consensus 198 T 198 (336)
T KOG1547|consen 198 T 198 (336)
T ss_pred c
Confidence 4
No 315
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.02 E-value=6.1e-10 Score=80.68 Aligned_cols=123 Identities=17% Similarity=0.173 Sum_probs=81.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC---------ccccccchhhcc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---------QERFQSLGVAFY 78 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---------~~~~~~~~~~~~ 78 (165)
-.-|.++|.+|||||||++.|......+...-+.+.+...+....... -.+.+.||.| ...|+... ...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence 356899999999999999999977665555545455555444444332 3566679999 12232222 223
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..+|.++.|.|++.|...+.....+.-+..+.-........+|=|-||.|..+.
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 568999999999999877766666666655433211112346779999998664
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.02 E-value=1.9e-09 Score=79.85 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=54.1
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-- 134 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-- 134 (165)
+.+.|+||+|...... .....+|.++++.+.........+ ...+. ...-++|+||+|+.....
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~---------E~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI---KKGIM---------ELADLIVINKADGDNKTAAR 213 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH---Hhhhh---------hhhheEEeehhcccchhHHH
Confidence 5688999999663322 246779999999764433333222 22111 223489999999976421
Q ss_pred chhchhHHhhhh------cceeceeeeccccccCCC
Q 031126 135 RVVCIFCDVFSS------IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 135 ~~~~~~~~~~~~------~~~i~~~~~s~~~~~~~~ 164 (165)
+...+....+.- .+..+.+.+|++++.+++
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GId 249 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGID 249 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHH
Confidence 112222222221 133468889999988764
No 317
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.8e-09 Score=74.44 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh---hccccccEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV---AFYRGADCCV 85 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---~~~~~~~~~i 85 (165)
.+|+++|...|||||+-+.....-.+..+ -....+.....-.+.+.-+.+.+||.||+-.+..... ..++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 56999999999999977665544322211 1110111111112233446799999999877654332 4579999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
+|+|+.+.. .+.+.++...+.+..... .++.+-++..|.|-..+..+.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvN--p~in~EVfiHKvDGLsdd~ki 154 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVN--PNINFEVFIHKVDGLSDDFKI 154 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecC--CCceEEEEEEeccCCchhhhh
Confidence 999998743 333444455544433321 267788999999987654333
No 318
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2e-09 Score=85.28 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=80.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC--------------CCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (165)
......|++++.+.+.|||||+..|+..+....+ ..+.+.+.....+.+-.+++.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 4456789999999999999999999764321100 11112222222233334668899999999999
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
|.+......+-+|++++.+|+...-..+...-.++.+.. +...++|.||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 999999999999999999999865333322222222211 567799999999
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4.8e-09 Score=78.81 Aligned_cols=142 Identities=18% Similarity=0.058 Sum_probs=96.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
.|.-.|+-..|||||+..+.+... ++...+..+.+.........+ ..+.|+|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999999987653 233344444555544444444 478899999999999888888889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhcceeceeeeccccccC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
|++.++.-..+..+. ..+..++. -...++|.||+|..++ ..+. +....+. ....+.+..|+++|.+
T Consensus 80 vV~~deGl~~qtgEh--L~iLdllg-----i~~giivltk~D~~d~--~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~G 149 (447)
T COG3276 80 VVAADEGLMAQTGEH--LLILDLLG-----IKNGIIVLTKADRVDE--ARIEQKIKQILADLS-LANAKIFKTSAKTGRG 149 (447)
T ss_pred EEeCccCcchhhHHH--HHHHHhcC-----CCceEEEEeccccccH--HHHHHHHHHHHhhcc-cccccccccccccCCC
Confidence 999976544333322 22233332 3457999999999875 2222 2223333 4455668888888764
Q ss_pred C
Q 031126 163 S 163 (165)
Q Consensus 163 ~ 163 (165)
+
T Consensus 150 I 150 (447)
T COG3276 150 I 150 (447)
T ss_pred H
Confidence 3
No 320
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.3e-09 Score=86.34 Aligned_cols=115 Identities=25% Similarity=0.312 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCc----eeeeEEEEE--------EEECC----eEEEEEEEeCCCcccccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKE--------VQFED----RLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~--------~~~~~----~~~~~~~~D~~g~~~~~~ 72 (165)
.=++|+|+..+|||-|+..+...+....-..+ ++.++++.. +.-++ ..--+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 34789999999999999999886654332222 223333222 00001 011367889999999999
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
+..+....||.+|+|+|+-..--...+.. +..+... +.|+|+..||+|...
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR~r-------ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLRMR-------KTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHH-HHHHHhc-------CCCeEEeehhhhhhc
Confidence 99999999999999999976432222222 1222221 889999999999743
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.98 E-value=7.2e-09 Score=71.84 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=51.1
Q ss_pred EEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh
Q 031126 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV 137 (165)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (165)
...++++.|..-.....+ .-++.++.|+|+.+..+... .+...+ ...=++++||+|+.+......
T Consensus 93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccccccH
Confidence 455667777422221211 12678999999987554221 111111 112289999999985321222
Q ss_pred ---chhHHhhhhcceeceeeeccccccCCC
Q 031126 138 ---CIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 138 ---~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.+..+.+.. ..+++++||++|.+++
T Consensus 158 ~~~~~~~~~~~~--~~~i~~~Sa~~g~gi~ 185 (199)
T TIGR00101 158 GVMERDAKKMRG--EKPFIFTNLKTKEGLD 185 (199)
T ss_pred HHHHHHHHHhCC--CCCEEEEECCCCCCHH
Confidence 233333332 4679999999999864
No 322
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.96 E-value=3.6e-09 Score=73.82 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=72.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC-CCCC-----------CCC----CceeeeEEEEEEEECC----------------
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK-KFSN-----------QYK----ATIGADFLTKEVQFED---------------- 54 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~-~~~~-----------~~~----~~~~~~~~~~~~~~~~---------------- 54 (165)
.+..|.++|..|+|||||+++++.. .... ... ...+.. .... .++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHALED 97 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHHHHH
Confidence 3688999999999999999998754 1100 000 000000 0000 000
Q ss_pred ---eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 55 ---RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 55 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
....+.++++.|.-... . .+.-..+..+.|+|+.+.... .... ... . ..|.++++||+|+..
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~-~--~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~--~-------~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP-A--DFDLGEHMRVVLLSVTEGDDK--PLKY-PGM--F-------KEADLIVINKADLAE 162 (207)
T ss_pred hccCCCCEEEEecCCCcCCC-c--ccccccCeEEEEEecCcccch--hhhh-HhH--H-------hhCCEEEEEHHHccc
Confidence 01345666777721111 0 111224555677777654321 1111 111 1 557899999999975
Q ss_pred CCCchhchhHHhhhhc-ceeceeeeccccccCCC
Q 031126 132 GNSRVVCIFCDVFSSI-ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~~ 164 (165)
.......+..+.+... ...+++.+|+++|.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~ 196 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLD 196 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHH
Confidence 4212222222222222 23569999999998864
No 323
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.95 E-value=2.6e-09 Score=70.11 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=37.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
+++++|.+|+|||||+|++........ ....+.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775422 22222333333444443 4789999994
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=6.5e-09 Score=76.50 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc
Q 031126 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 135 (165)
.+.+.|+||+|.... ....+..+|.++++.+.. +.+++..+...+. ++|.++|+||+|+......
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM---------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence 356788899985422 123466788888775433 3334444333331 6688999999999765321
Q ss_pred hhc--hh---HHhhhh---cceeceeeeccccccCCC
Q 031126 136 VVC--IF---CDVFSS---IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 136 ~~~--~~---~~~~~~---~~~i~~~~~s~~~~~~~~ 164 (165)
... .. ...+.+ .+...++.+|++++.+..
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~ 227 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGID 227 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHH
Confidence 111 11 011111 122357899999987753
No 325
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.9e-09 Score=77.20 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=86.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceee-------------------eEEE-EEEEEC----CeEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGA-------------------DFLT-KEVQFE----DRLFT 58 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~-------------------~~~~-~~~~~~----~~~~~ 58 (165)
+..+||-++|+...|||||..+|.+--. ++...+..+. .+.. ..+... .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5679999999999999999999975211 0000000000 0000 001111 11235
Q ss_pred EEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc
Q 031126 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC 138 (165)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 138 (165)
+.|.|.||++-.-....+-..-.|++++|+.++.+-.--...+-+..+..+. -..+|+|-||+|+.... +..+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E-~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRE-RALE 160 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHH-HHHH
Confidence 7899999998776666555566799999999986422111122223333332 34789999999997752 1122
Q ss_pred --hhHHhh-h--hcceeceeeeccccccCC
Q 031126 139 --IFCDVF-S--SIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 139 --~~~~~~-~--~~~~i~~~~~s~~~~~~~ 163 (165)
+..+.| + -..+.+.+..||..++|+
T Consensus 161 ~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NI 190 (415)
T COG5257 161 NYEQIKEFVKGTVAENAPIIPISAQHKANI 190 (415)
T ss_pred HHHHHHHHhcccccCCCceeeehhhhccCH
Confidence 111222 1 123446778888887775
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=9.1e-09 Score=68.72 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=36.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
...+++++|.||+|||||+|++........ .+..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 457899999999999999999987654322 11222222222222222 367889998
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.85 E-value=1e-08 Score=69.48 Aligned_cols=56 Identities=30% Similarity=0.426 Sum_probs=37.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..++++++|.||+|||||+|++.+....... +..+.+.....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 3479999999999999999999987653221 2222222233333332 477889998
No 328
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=1.9e-08 Score=68.19 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=39.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
+..++++++|.+|+|||||+|++....+... ....+.+.....+.++ ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998775322 2222233333333333 34789999993
No 329
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=4.2e-08 Score=71.69 Aligned_cols=90 Identities=23% Similarity=0.209 Sum_probs=63.6
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC---------------eEEEEEEEeCCC
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG 66 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g 66 (165)
+.+..+.+++.|+|.|++|||||.|.+.+........++.+.+.....+...+ .+..++++|+.|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34566788999999999999999999999887766666666555554444321 245689999888
Q ss_pred ----c---cccccchhhccccccEEEEEEeCC
Q 031126 67 ----Q---ERFQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 67 ----~---~~~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
. +.........++.+|+++-|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2 222233334467899999888753
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.7e-08 Score=73.04 Aligned_cols=83 Identities=22% Similarity=0.138 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC----------------CeEEEEEEEeCCC------
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAG------ 66 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g------ 66 (165)
+++.|+|.|++|||||.|.++.........|+.+.+.......+. -....+.++|.+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 789999999999999999999988655556655555444433321 1234688999988
Q ss_pred -ccccccchhhccccccEEEEEEeCC
Q 031126 67 -QERFQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
.+........-++.+|+++.|+|+.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2333333344568999999999975
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=2.4e-08 Score=68.77 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-------CCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
..+++++|.+|+|||||+|+|....... ......+.+........+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3689999999999999999998754311 1111112333333333332 468999998
No 332
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=4.3e-08 Score=71.35 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=38.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
...++++++|.||+|||||+|++.+....... ...+.+.....+..+. .+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999976643221 1222222233333332 4689999996
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.73 E-value=5e-08 Score=65.03 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=37.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
...+++++|.+++|||||+|++.+.... ...++.+.+........+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999965532 2233333332222222222 588999998
No 334
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=5.3e-08 Score=72.89 Aligned_cols=83 Identities=22% Similarity=0.056 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--- 69 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~--- 69 (165)
+++.|+|.|++|||||.+.++.... .....++.+.+.....+.+.+. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4443444433444444444332 13578889999322
Q ss_pred ----cccchhhccccccEEEEEEeCC
Q 031126 70 ----FQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 70 ----~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223334568999999999974
No 335
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.72 E-value=6.4e-08 Score=70.85 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=39.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
...++++++|.||+|||||+|++.+...... .+..+.+.....+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3568999999999999999999998765322 11222222223333333 47799999953
No 336
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.1e-07 Score=73.53 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=72.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCcee-------------------------------------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG------------------------------------------- 42 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~------------------------------------------- 42 (165)
+...||+|.|..++||||++|+++....-+......+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4578999999999999999999987543222111100
Q ss_pred -eeEEEEEEEECC-eE---EEEEEEeCCCc---cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCC
Q 031126 43 -ADFLTKEVQFED-RL---FTLQIWDTAGQ---ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 114 (165)
Q Consensus 43 -~~~~~~~~~~~~-~~---~~~~~~D~~g~---~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (165)
.......+..++ +. --+.++|.||- .....-...+...+|++|+|.++.+..+..+. ++.......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-----~Ff~~vs~~- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-----QFFHKVSEE- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-----HHHHHhhcc-
Confidence 000111111111 00 02567899993 34444455667889999999999886555443 222222221
Q ss_pred CCCCcEEEEEeCCCCCCC
Q 031126 115 PDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 115 ~~~~piilv~nK~Dl~~~ 132 (165)
+..|+++-||.|....
T Consensus 261 --KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 --KPNIFILNNKWDASAS 276 (749)
T ss_pred --CCcEEEEechhhhhcc
Confidence 5568888999998765
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.69 E-value=1.3e-07 Score=67.45 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=68.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC-ceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL 73 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 73 (165)
++...++++.|.+++|||||+|.+...+....... ..+.+.....+.+. -.+.+.|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 46679999999999999999999987765433222 22222222222322 2566779999 2233333
Q ss_pred hhhcc-c--cccEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 74 GVAFY-R--GADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 74 ~~~~~-~--~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
...|+ + +---+++.+|++.+..- ..+..|+.+. ++|..+|.||||....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhh
Confidence 33443 2 12244566777654222 2223344432 8999999999998653
No 338
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-08 Score=76.90 Aligned_cols=148 Identities=21% Similarity=0.321 Sum_probs=110.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
-+.+|+.|+|..++|||+|+.+++.+.+.+...+. ...+.+++..+++...+.+.|..|... ..|....|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 34689999999999999999999999886544333 334556666778888888888888322 24567799999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc--hhHHhhhhcceeceeeeccccccCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC--IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++|...+..+++.+..+...+...... ..+|.++++++.=.....++.+. +..+......+.++++..+..|.|+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r---~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNI---SDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred EEEEeccccCHHHHHHHHhhccccccc---ccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 999999999999887766666543332 27889999988655444444433 5556667888899999999988775
No 339
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.68 E-value=5.4e-08 Score=72.23 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=41.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
....++.|+|.|++|||||||+|.+...... .+..|.+-....+..+. .+.++||||--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 3458899999999999999999998876322 22224444444444444 37888999943
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.6e-07 Score=68.76 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=81.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC----C------------CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK----K------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
+..+..||--+|+...|||||--.+..- . -++...+ +.++....+++.-..-.+.-.|+||+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCch
Confidence 4567899999999999999997776531 1 1122222 34455555555544456677799999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+|-.....-..+.|++|+|+.++|..-.+.-+. ..+.+... =..++++.||.|+.++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQVG-----V~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQVG-----VKHIVVFINKVDLVDD 185 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHHcC-----CceEEEEEecccccCC
Confidence 9999998888888999999999998543332211 22223322 2358899999999854
No 341
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.65 E-value=1.7e-07 Score=80.10 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=65.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCC------CCceeeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQY------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA 76 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 76 (165)
.+|+|++|+||||++..- +-.++-.. ....+.+. .+...+.+ .-.++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999987 33332110 00111111 11222333 24578999932 12223444
Q ss_pred cc---------ccccEEEEEEeCCChhh-----H----HHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 77 FY---------RGADCCVLVYDVNSMKS-----F----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 77 ~~---------~~~~~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
++ +..|++|+++|+.+.-. . ..+..-+.++...+.. ..||+||.||||+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhc
Confidence 43 34799999999865321 1 2233345555555443 899999999999874
No 342
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.61 E-value=5.6e-07 Score=63.58 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=54.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC--CCCCCCC-CceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccc------h
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSL------G 74 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~------~ 74 (165)
..+..-|.|+|++++|||+|+|++.+. .+..... ...+...+....... +....+.++||+|-...... .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 455678999999999999999999988 5542211 111122222222211 23467889999995543321 1
Q ss_pred hhcccc--ccEEEEEEeCCCh
Q 031126 75 VAFYRG--ADCCVLVYDVNSM 93 (165)
Q Consensus 75 ~~~~~~--~~~~i~v~d~~~~ 93 (165)
...+.. ++++||..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 222333 7888887776643
No 343
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.61 E-value=1.5e-07 Score=62.71 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=37.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
....+++++|.+|+|||||+|++....... ...+..+.... ..... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 456889999999999999999999865322 22222222222 22222 2478889998
No 344
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.4e-08 Score=76.14 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=91.9
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCC--------CCCC--------CCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--------FSNQ--------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
+...+..||.|+.+-.+||||.-.|+++-. .... ..+..+.+.....+.++.+..++.++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 344567899999999999999999987521 1100 012234556666777888889999999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
+.+|+-.....++--|+++.|||.+-.-..+.+--|.+.- +.++|-+.+.||.|....+
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqad--------k~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD--------KFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc--------ccCCchhhhhhhhhhhhhh
Confidence 9999999999999999999999998765444444454421 1188999999999987653
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.4e-07 Score=70.74 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=73.3
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
|...++++=++++|+||+||||||..|...-... +...-....+ -..++.-.++++.+|. +..++. ...+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceE-EeecceeEEEEEeChH--HHHHHH-hHHHhh
Confidence 3455677888999999999999999887543211 1100011112 2356667889999993 333332 345779
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCC
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGN 133 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 133 (165)
|.+++.+|.+-.-..+.+ +++..+... ..| ++-|+|+.|+....
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~H-------GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISH-------GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhc-------CCCceEEEEeecccccCh
Confidence 999999999865433332 233333222 445 67799999998764
No 346
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.5e-07 Score=68.70 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=78.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCC-----------------------CceeeeEEEEEEEEC-------
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-----------------------ATIGADFLTKEVQFE------- 53 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~------- 53 (165)
++.-.+|++++|...+|||||+-.|..++...... ...+.+......++.
T Consensus 163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 34457899999999999999999887654422111 111222211222221
Q ss_pred ---CeEEEEEEEeCCCccccccchhhccc--cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 54 ---DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 54 ---~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
...-.++++|..|+..|.......+. ..|.+++++.++....+..- +-+-.+..+ ++|++++.+|.|
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~AL-------~iPfFvlvtK~D 314 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAAL-------NIPFFVLVTKMD 314 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHHh-------CCCeEEEEEeec
Confidence 11235789999999999887776654 36899999999876544321 112222222 899999999999
Q ss_pred CCCC
Q 031126 129 VDGG 132 (165)
Q Consensus 129 l~~~ 132 (165)
+.+.
T Consensus 315 l~~~ 318 (591)
T KOG1143|consen 315 LVDR 318 (591)
T ss_pred cccc
Confidence 9875
No 347
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=2.6e-07 Score=66.08 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCc----eeeeEEEEEEEECCeEEEEEEEeCCC-------ccccccchh-
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKEVQFEDRLFTLQIWDTAG-------QERFQSLGV- 75 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g-------~~~~~~~~~- 75 (165)
.+||+.+|.+|.|||||++.|.+..+.....+. ......+..+.-.+-.+.+++.||.| .+.|.....
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 589999999999999999999998875443332 22222222233345667889999999 112221111
Q ss_pred ------hc-------------c--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 ------AF-------------Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ------~~-------------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.| + ...++++|.+..+... +..+. +..+..+.. ++.||.|+-|.|-...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslD--Lvtmk~Lds-----kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLD--LVTMKKLDS-----KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHH--HHHHHHHhh-----hhhhHHHHHHhhhhhH
Confidence 11 1 2468999998887642 22221 112222222 7788889999997654
No 348
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.52 E-value=7.5e-07 Score=66.38 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCC--------------CceeeeEEEEEEEECC----------------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVQFED---------------- 54 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---------------- 54 (165)
.+..+.+...|+.++|||||+-.|..+....-.. +..+.+.....+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4567899999999999999999887664322111 1111222222221211
Q ss_pred -----eEEEEEEEeCCCccccccchhhcc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 55 -----RLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 55 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
..-.+.|.|+.|++.|-.....-+ .+.|..++++-+++..+.-.-+ ..-+.-. ...|+|+|.||+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi~~a------~~lPviVvvTK~ 265 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGIALA------MELPVIVVVTKI 265 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhhhhh------hcCCEEEEEEec
Confidence 113477889999998876554433 6789999999999865432211 1111111 188999999999
Q ss_pred CCCCC
Q 031126 128 DVDGG 132 (165)
Q Consensus 128 Dl~~~ 132 (165)
|+.++
T Consensus 266 D~~~d 270 (527)
T COG5258 266 DMVPD 270 (527)
T ss_pred ccCcH
Confidence 99775
No 349
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=1.1e-07 Score=63.39 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=50.4
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT 149 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (165)
|+.+....++.+|++++|+|+.++...... .+...+.. . ++|+++|+||+|+.+. ....... .+.+...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~----~---~~p~iiv~NK~Dl~~~--~~~~~~~-~~~~~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE----L---GKKLLIVLNKADLVPK--EVLEKWK-SIKESEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh----C---CCcEEEEEEhHHhCCH--HHHHHHH-HHHHhCC
Confidence 344566677889999999999876433321 11111111 1 6799999999999643 2222211 2222233
Q ss_pred eceeeeccccccCC
Q 031126 150 LSHTHTHGHTNTHS 163 (165)
Q Consensus 150 i~~~~~s~~~~~~~ 163 (165)
..++.+||+++.+.
T Consensus 71 ~~~~~iSa~~~~gi 84 (156)
T cd01859 71 IPVVYVSAKERLGT 84 (156)
T ss_pred CcEEEEEccccccH
Confidence 45788999988765
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=1.2e-07 Score=63.19 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++++|++|+|||||+|.|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999763
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.48 E-value=3e-07 Score=61.39 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=50.5
Q ss_pred hccccccEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceecee
Q 031126 76 AFYRGADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHT 153 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~ 153 (165)
..++.+|++++|+|+.++... ..+.+++. .. . .++|+++|.||+|+.+. +....+...+.+..+...+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~----~~~p~ilVlNKiDl~~~--~~~~~~~~~~~~~~~~~~~ 73 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-K----PHKHLIFVLNKCDLVPT--WVTARWVKILSKEYPTIAF 73 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-c----CCCCEEEEEEchhcCCH--HHHHHHHHHHhcCCcEEEE
Confidence 456889999999999986432 22222222 11 1 15799999999999754 3333444555554444457
Q ss_pred eeccccccCCC
Q 031126 154 HTHGHTNTHSN 164 (165)
Q Consensus 154 ~~s~~~~~~~~ 164 (165)
..|++.+.+.+
T Consensus 74 ~iSa~~~~~~~ 84 (157)
T cd01858 74 HASINNPFGKG 84 (157)
T ss_pred EeeccccccHH
Confidence 78988887653
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.48 E-value=1.9e-07 Score=64.32 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=51.7
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch--hchhHHhh--h
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV--VCIFCDVF--S 145 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~--~ 145 (165)
++..+..+++.+|++++|+|+.++.. .|...+..... ++|+++|+||+|+....... ...+.+.+ .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~-----~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGG-----NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcC-----CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence 56777788999999999999987532 12223322211 67999999999996532111 11111001 1
Q ss_pred --hcceeceeeeccccccCCC
Q 031126 146 --SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 146 --~~~~i~~~~~s~~~~~~~~ 164 (165)
......++.+||++|.+.+
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~ 114 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVE 114 (190)
T ss_pred hcCCCcccEEEEECCCCCCHH
Confidence 1111247889999988754
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.48 E-value=3.5e-07 Score=66.95 Aligned_cols=77 Identities=12% Similarity=-0.047 Sum_probs=55.2
Q ss_pred ccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 77 FYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
.+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+. .......... ......++.+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~~~~~~~~~~-~~~g~~v~~v 144 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--EEEELELVEA-LALGYPVLAV 144 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--HHHHHHHHHH-HhCCCeEEEE
Confidence 468899999999999887 778888887766542 7899999999999754 2211111111 2234567889
Q ss_pred ccccccCC
Q 031126 156 HGHTNTHS 163 (165)
Q Consensus 156 s~~~~~~~ 163 (165)
|++++.+.
T Consensus 145 SA~~g~gi 152 (287)
T cd01854 145 SAKTGEGL 152 (287)
T ss_pred ECCCCccH
Confidence 99998764
No 354
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=3.4e-07 Score=60.04 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=48.6
Q ss_pred hhccccccEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceece
Q 031126 75 VAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~ 152 (165)
...++.+|++++|+|+.++.+.. .+..|+... .. ++|+++|+||+|+.++ ....+..+.+... ...+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~-----~k~~iivlNK~DL~~~--~~~~~~~~~~~~~-~~~i 74 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DP-----RKKNILLLNKADLLTE--EQRKAWAEYFKKE-GIVV 74 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cC-----CCcEEEEEechhcCCH--HHHHHHHHHHHhc-CCeE
Confidence 34678899999999998876543 333333322 11 6799999999999654 3333333333332 2457
Q ss_pred eeecccccc
Q 031126 153 THTHGHTNT 161 (165)
Q Consensus 153 ~~~s~~~~~ 161 (165)
+..|++++.
T Consensus 75 i~iSa~~~~ 83 (141)
T cd01857 75 VFFSALKEN 83 (141)
T ss_pred EEEEecCCC
Confidence 788888764
No 355
>PRK12289 GTPase RsgA; Reviewed
Probab=98.46 E-value=5e-07 Score=67.73 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=54.0
Q ss_pred hccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceee
Q 031126 76 AFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTH 154 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (165)
..+.++|.+++|+|+.++. ....+..|+...... ++|+++|+||+||... .....+...+. ......+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~-------~ip~ILVlNK~DLv~~--~~~~~~~~~~~-~~g~~v~~ 154 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAEST-------GLEIVLCLNKADLVSP--TEQQQWQDRLQ-QWGYQPLF 154 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEEchhcCCh--HHHHHHHHHHH-hcCCeEEE
Confidence 3468899999999998765 444566666655322 7899999999999754 32333333332 23446788
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+|++++.+.+
T Consensus 155 iSA~tg~GI~ 164 (352)
T PRK12289 155 ISVETGIGLE 164 (352)
T ss_pred EEcCCCCCHH
Confidence 9999987753
No 356
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=6.3e-07 Score=68.92 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=78.7
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCC------------CCCC----CCceeeeEEEEEEE--------------
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKF------------SNQY----KATIGADFLTKEVQ-------------- 51 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~~~~----~~~~~~~~~~~~~~-------------- 51 (165)
+.++.+..|+.++.+...|||||-..|....- .... .+..+.......+.
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45677889999999999999999999864311 1000 01111111111111
Q ss_pred ECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
-++..+.+.++|.||+-+|.+.....++-.|++++|+|..+.--.+.---+.+.+.. ++.=++|.||.|..
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHH
Confidence 134568899999999999999999999999999999998875333221112222221 33337889999964
No 357
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.43 E-value=7.6e-07 Score=60.55 Aligned_cols=67 Identities=13% Similarity=-0.029 Sum_probs=39.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc---hhHHhhhhcceeceeeecccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC---IFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.-++|+|++..+..= ....+-+. . .=++|.||.|+.+.-....+ +..+.+..- .+++..++++
T Consensus 120 ~~v~VidvteGe~~P--~K~gP~i~---------~-aDllVInK~DLa~~v~~dlevm~~da~~~np~--~~ii~~n~kt 185 (202)
T COG0378 120 LRVVVIDVTEGEDIP--RKGGPGIF---------K-ADLLVINKTDLAPYVGADLEVMARDAKEVNPE--APIIFTNLKT 185 (202)
T ss_pred eEEEEEECCCCCCCc--ccCCCcee---------E-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCC--CCEEEEeCCC
Confidence 788899988643110 00011110 1 33899999999875434333 444444444 4589999999
Q ss_pred ccCC
Q 031126 160 NTHS 163 (165)
Q Consensus 160 ~~~~ 163 (165)
|.+.
T Consensus 186 g~G~ 189 (202)
T COG0378 186 GEGL 189 (202)
T ss_pred CcCH
Confidence 8753
No 358
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=6.2e-07 Score=67.19 Aligned_cols=22 Identities=45% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (165)
++|+|.+|+|||||||+|+...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999764
No 359
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.41 E-value=7e-07 Score=67.38 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC----CCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
.+++++|.+|+|||||+|+++...... ......+.+.....+..++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 589999999999999999999754211 1111122223333333322 24688999943
No 360
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=6.1e-07 Score=67.80 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC----CCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.++.++|.+|+|||||+|+|+...... ...+..+.+.....+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 579999999999999999998643111 01112222333333334332 368899995
No 361
>PRK00098 GTPase RsgA; Reviewed
Probab=98.38 E-value=6.9e-07 Score=65.75 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=52.5
Q ss_pred ccccccEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 77 FYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
...++|.+++|+|+.++.+... +..|+..+... ++|+++|+||+|+.+.. ....+..+.+. .....++.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~-------~ip~iIVlNK~DL~~~~-~~~~~~~~~~~-~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN-------GIKPIIVLNKIDLLDDL-EEARELLALYR-AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEEhHHcCCCH-HHHHHHHHHHH-HCCCeEEEE
Confidence 3588999999999988765444 46666655432 78999999999996331 11222222222 234568899
Q ss_pred ccccccCCC
Q 031126 156 HGHTNTHSN 164 (165)
Q Consensus 156 s~~~~~~~~ 164 (165)
|++++.+.+
T Consensus 148 SA~~g~gi~ 156 (298)
T PRK00098 148 SAKEGEGLD 156 (298)
T ss_pred eCCCCccHH
Confidence 999987753
No 362
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=4.6e-07 Score=68.38 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=57.9
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc--hhchhHHhh
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVCIFCDVF 144 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~ 144 (165)
++.|......+.+.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+...... ...++.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 5678877778888999999999987643 335555555443 6799999999999754211 112222222
Q ss_pred hhccee---ceeeeccccccCCC
Q 031126 145 SSIITL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 145 ~~~~~i---~~~~~s~~~~~~~~ 164 (165)
.....+ .++.+||++|.+++
T Consensus 120 ~k~~g~~~~~i~~vSAk~g~gv~ 142 (360)
T TIGR03597 120 AKELGLKPVDIILVSAKKGNGID 142 (360)
T ss_pred HHHcCCCcCcEEEecCCCCCCHH
Confidence 222222 47889999998864
No 363
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.37 E-value=6.9e-07 Score=64.94 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCCCCCCCchhchhHHhhhhc-ceeceeeeccccccCC
Q 031126 117 NFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI-ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 117 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~ 163 (165)
..+-++|.||+|+.+.....+....+.+... .....+..|+++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGl 277 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGM 277 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCH
Confidence 4566999999999763222333333444333 2456889999998774
No 364
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.36 E-value=9.6e-07 Score=63.23 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..++++|++|+|||||+|++....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 367999999999999999998753
No 365
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=2.6e-06 Score=60.59 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=52.7
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeC
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (165)
++|.++|..|+.+-+..|...+.+.-++|+|+..++ ...+.+...+.+.+....... .+.+|++.||
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~---tisvIlFLNK 278 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR---TISVILFLNK 278 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh---hhheeEEecH
Confidence 668999999999999999999999999999988764 122222223333333332222 6789999999
Q ss_pred CCCCCC
Q 031126 127 IDVDGG 132 (165)
Q Consensus 127 ~Dl~~~ 132 (165)
.|+..+
T Consensus 279 qDllae 284 (379)
T KOG0099|consen 279 QDLLAE 284 (379)
T ss_pred HHHHHH
Confidence 998654
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.34 E-value=4.3e-08 Score=69.56 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=73.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC----CC-------CCCCCCce---------------eeeEEEEEEEECC------
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK----KF-------SNQYKATI---------------GADFLTKEVQFED------ 54 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~----~~-------~~~~~~~~---------------~~~~~~~~~~~~~------ 54 (165)
+...|.|.|+||+|||||++.|... .. .+.++.+- ....+...+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4578999999999999999988642 10 01111010 1222333322110
Q ss_pred ------------eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEE
Q 031126 55 ------------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122 (165)
Q Consensus 55 ------------~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (165)
..+-+.|+.|.|.-..+. ....-+|.+++|.-.......+.+..-+.++ .=|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi~ 172 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADIF 172 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccEE
Confidence 114466777777322221 2346689999998877655555444444444 2289
Q ss_pred EEeCCCCCCCCCchhchhHHhh------hhcceeceeeeccccccCC
Q 031126 123 LGNKIDVDGGNSRVVCIFCDVF------SSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~------~~~~~i~~~~~s~~~~~~~ 163 (165)
|.||+|++... +...++...+ ...|..+.+.+||.++.++
T Consensus 173 vVNKaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 173 VVNKADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp EEE--SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred EEeCCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 99999965431 1111211111 2334558999999988765
No 367
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.33 E-value=1.7e-06 Score=62.93 Aligned_cols=108 Identities=14% Similarity=0.238 Sum_probs=65.9
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC----------------
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---------------- 66 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---------------- 66 (165)
+++.+..+++|+|++|.|||+++++|...+..... ... ..+.+.....|.
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDA-------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCC-------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 46677889999999999999999999987743221 110 012233334433
Q ss_pred --------ccccccchhhccccccEEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 67 --------QERFQSLGVAFYRGADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 67 --------~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
...........++...+-++|+|--.. .+...-..++..+......- ++|++.||++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccHH
Confidence 112222333566788999999996542 22333334444444443332 89999999863
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.7e-06 Score=64.90 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-hhchhHHhhhhcceeceeeecc
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-VVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
.++|.+++|++.....++..+..|+...... ++|+++|+||+|+.+.... ...+..+.+.. ....++.+|+
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~-------~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~~v~~vSA 190 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETL-------GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGYRVLMVSS 190 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 4589999999999888999999987754322 7899999999999764211 12222333322 3456889999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
+++.+.+
T Consensus 191 ~tg~Gid 197 (347)
T PRK12288 191 HTGEGLE 197 (347)
T ss_pred CCCcCHH
Confidence 9987653
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.3e-06 Score=65.48 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (165)
++|+|.+|+|||||||+|....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999654
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=5.7e-06 Score=55.33 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998765
No 371
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1e-06 Score=68.99 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=82.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC-----CCCCCC-----------CceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKK-----FSNQYK-----------ATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (165)
.+..+|-+.-+-.+||||+-++++.-. .-+... +..+.+....-....+..+.+.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456789999999999999999876421 101111 1112222333333445578999999999999
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
|.-...+.++--|++++|+|+...-.-+..--| .++.+. ++|.|.+.||.|....+
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-------~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-------NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-------CCCeEEEEehhhhcCCC
Confidence 999999999999999999998765333322222 333333 89999999999986654
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.27 E-value=2e-06 Score=57.28 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=45.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
|++++|+|+.++.+.... ++.. ...... ++|+++|.||+|+.+. ....++...+........+..|+++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~---~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEK---GKKLILVLNKADLVPK--EVLRKWLAYLRHSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcC---CCCEEEEEechhcCCH--HHHHHHHHHHHhhCCceEEEEeccCCc
Confidence 689999999887554421 2221 111111 7899999999999654 323333333333334457888999987
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+..
T Consensus 72 gi~ 74 (155)
T cd01849 72 GIE 74 (155)
T ss_pred Chh
Confidence 754
No 373
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=1.8e-05 Score=52.39 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (165)
..+||.|.|+||+||||++.++.+.=-.. .-.. ..+.+.++.-++..+-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kv-gGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK--GYKV-GGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc--Ccee-eeEEeeeeecCCeEeeeEEEEcc
Confidence 45899999999999999999886431100 0111 34556666677788888888887
No 374
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.25 E-value=7.3e-05 Score=56.89 Aligned_cols=138 Identities=14% Similarity=0.187 Sum_probs=74.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC-----------------CCCCCC-CCce---eeeEE---EEEEEE-CCeEEEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK-----------------KFSNQY-KATI---GADFL---TKEVQF-EDRLFTLQIW 62 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~-----------------~~~~~~-~~~~---~~~~~---~~~~~~-~~~~~~~~~~ 62 (165)
-+=+.++|+..+||||||+||... +.+++. ..+. ...+. ...+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 355889999999999999999862 111111 0110 01111 111222 4667889999
Q ss_pred eCCC-------------------ccccccchh----------hcccccc--EEEEEEeCC----ChhhHHHH-HHHHHHH
Q 031126 63 DTAG-------------------QERFQSLGV----------AFYRGAD--CCVLVYDVN----SMKSFDNL-NNWREEF 106 (165)
Q Consensus 63 D~~g-------------------~~~~~~~~~----------~~~~~~~--~~i~v~d~~----~~~s~~~~-~~~~~~~ 106 (165)
|+.| -++|....+ ..+.... ++++.-|.+ .++...++ ++...++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998 122222221 0112222 444444433 13333333 3456666
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 107 LIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 107 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
... ++|++++.|-.+=.. ....+.+..+.+...++....
T Consensus 177 k~i-------gKPFvillNs~~P~s---~et~~L~~eL~ekY~vpVlpv 215 (492)
T PF09547_consen 177 KEI-------GKPFVILLNSTKPYS---EETQELAEELEEKYDVPVLPV 215 (492)
T ss_pred HHh-------CCCEEEEEeCCCCCC---HHHHHHHHHHHHHhCCcEEEe
Confidence 655 889999999775422 444456666666655555443
No 375
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.24 E-value=6.6e-06 Score=58.49 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc-------ccccchhhccccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYRGA 81 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~~ 81 (165)
.++-++|-|.+||||++..+.+...+.................+.+ -++.+.|.||.- ..........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999987655444444444444444444555 567888999932 2233444556889
Q ss_pred cEEEEEEeCCChhhHHHH
Q 031126 82 DCCVLVYDVNSMKSFDNL 99 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~ 99 (165)
+.+++|+|+..+-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999999887666554
No 376
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.23 E-value=3.7e-06 Score=60.89 Aligned_cols=143 Identities=14% Similarity=0.077 Sum_probs=78.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC----CC-------CCCCCCcee---------------eeEEEEEEEE------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK----KF-------SNQYKATIG---------------ADFLTKEVQF------ 52 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~----~~-------~~~~~~~~~---------------~~~~~~~~~~------ 52 (165)
..+...|-|.|.||+|||||+..|... .. .+.++.+-+ .+.+......
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 344568999999999999999988642 11 111111111 1112221111
Q ss_pred ------------CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcE
Q 031126 53 ------------EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120 (165)
Q Consensus 53 ------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi 120 (165)
+.-.+-+.++.|.|.-.... ...+-+|.++++.-.--....+-+..-+.++ -=
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------------aD 192 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI------------AD 192 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh------------hh
Confidence 11123466777877433322 2345688888876655555555444444443 23
Q ss_pred EEEEeCCCCCCCCCchhc---hhHH------hhhhcceeceeeeccccccCCC
Q 031126 121 VVLGNKIDVDGGNSRVVC---IFCD------VFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 121 ilv~nK~Dl~~~~~~~~~---~~~~------~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+|.||.|.... +... ..+. ...+-|.-+.+.++|.+|.+++
T Consensus 193 i~vINKaD~~~A--~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~ 243 (323)
T COG1703 193 IIVINKADRKGA--EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGID 243 (323)
T ss_pred eeeEeccChhhH--HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHH
Confidence 889999996544 2111 1111 1234456678889998887654
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=3.1e-06 Score=61.58 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=35.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC------CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (165)
-.+++|++|+|||||+|+|.... ........--.+.....+.+.+.. .++||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 46899999999999999998632 222221211122334444553211 467999955443
No 378
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.21 E-value=1.8e-05 Score=61.80 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=42.7
Q ss_pred EEEEEeCCC-------------ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEE
Q 031126 58 TLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (165)
Q Consensus 58 ~~~~~D~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (165)
...+.|.|| .+....+...+..+.+++|+|+---+-... ....-.+...+... ....|+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE---RSnVTDLVsq~DP~---GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE---RSIVTDLVSQMDPH---GRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh---hhhHHHHHHhcCCC---CCeeEEEE
Confidence 577889999 223334455667889999999754332211 11122232222222 66789999
Q ss_pred eCCCCCCCC
Q 031126 125 NKIDVDGGN 133 (165)
Q Consensus 125 nK~Dl~~~~ 133 (165)
||.|+.+.+
T Consensus 487 TKVDlAEkn 495 (980)
T KOG0447|consen 487 TKVDLAEKN 495 (980)
T ss_pred eecchhhhc
Confidence 999998764
No 379
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.21 E-value=4.4e-06 Score=62.38 Aligned_cols=118 Identities=20% Similarity=0.261 Sum_probs=69.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC------------------CCCCCceeeeEEEEEE------------------
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEV------------------ 50 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~------------------ 50 (165)
-.++|+++|...+|||||+-.|..++.. ....++.+.++.-...
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 3589999999999999999877764331 1112222222211000
Q ss_pred EE-CCeEEEEEEEeCCCccccccchhhcc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 51 QF-EDRLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 51 ~~-~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
.+ .+..-.++|+|..|++.|-.....-. ...|..++.+-++-..--- ..+-+ -+ .....+|+++|.+|+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGm-TKEHL-gL------ALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGM-TKEHL-GL------ALALHVPVFVVVTKI 283 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceec-cHHhh-hh------hhhhcCcEEEEEEee
Confidence 00 11223578999999999987765433 3457777777765421100 00000 11 111188999999999
Q ss_pred CCCCC
Q 031126 128 DVDGG 132 (165)
Q Consensus 128 Dl~~~ 132 (165)
|+...
T Consensus 284 DMCPA 288 (641)
T KOG0463|consen 284 DMCPA 288 (641)
T ss_pred ccCcH
Confidence 99877
No 380
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.18 E-value=5.1e-06 Score=63.46 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=59.1
Q ss_pred EEEEEE-CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC-------hhhHHHHHHHHHHHHHHcCCCCCCCC
Q 031126 47 TKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS-------MKSFDNLNNWREEFLIQASPSDPDNF 118 (165)
Q Consensus 47 ~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~ 118 (165)
...+.+ .+ ..+.++|++|+...+..|..++.+++++|+|+++++ ......+.+-+..+...+......+.
T Consensus 227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~ 304 (389)
T PF00503_consen 227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNT 304 (389)
T ss_dssp EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTS
T ss_pred EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccC
Confidence 334444 44 778999999999999999999999999999999753 11223344444555554544444489
Q ss_pred cEEEEEeCCCCCC
Q 031126 119 PFVVLGNKIDVDG 131 (165)
Q Consensus 119 piilv~nK~Dl~~ 131 (165)
|+||+.||.|+..
T Consensus 305 ~iil~lnK~D~f~ 317 (389)
T PF00503_consen 305 PIILFLNKIDLFE 317 (389)
T ss_dssp EEEEEEE-HHHHH
T ss_pred ceEEeeecHHHHH
Confidence 9999999999854
No 381
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.17 E-value=1.1e-05 Score=43.87 Aligned_cols=45 Identities=27% Similarity=0.238 Sum_probs=31.5
Q ss_pred ccccEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 79 RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 79 ~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
.-.++++|++|.+. ..+.++-...++++...+. ++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 44689999999974 5677777778888888876 789999999998
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.16 E-value=2e-05 Score=60.50 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=39.1
Q ss_pred EEEEEEEeCCCccccccchhhc------cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 56 LFTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
.+.+.|+||+|........... ...++.+++|+|+....... .....+... -.+--+|.||.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~-------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS-------VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc-------cCCcEEEEECccC
Confidence 3578899999954333222111 12467899999987543322 223333322 1255789999998
Q ss_pred CCC
Q 031126 130 DGG 132 (165)
Q Consensus 130 ~~~ 132 (165)
...
T Consensus 252 ~ar 254 (429)
T TIGR01425 252 HAK 254 (429)
T ss_pred CCC
Confidence 543
No 383
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=6.6e-06 Score=60.30 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~ 33 (165)
..++++|++|+|||||+|.|.....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4689999999999999999987543
No 384
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=5.5e-06 Score=62.17 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=90.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCC--------------CCCCCCce---------------eeeEEEEEEEECCe
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATI---------------GADFLTKEVQFEDR 55 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~---------------~~~~~~~~~~~~~~ 55 (165)
+...+|++++|+..+||||+-..++..-. .+....+. +.+.......+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 45679999999999999998776543100 00000000 01111111112222
Q ss_pred EEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHH-----HHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-----WREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-----~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
.-.+++.|.||+..|-.....-..+||..++|+++...+....... -...+.+... -...|++.||.|-+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMddP 230 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDDP 230 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEeccCC
Confidence 2468899999999999888878889999999999865432221111 1222223332 45789999999987
Q ss_pred CCCCchhc---------hhHH--hhhhcceeceeeeccccccCC
Q 031126 131 GGNSRVVC---------IFCD--VFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 131 ~~~~~~~~---------~~~~--~~~~~~~i~~~~~s~~~~~~~ 163 (165)
..+-.... .+.. .+...-++.++.+|+.+|.+.
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANV 274 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccch
Confidence 64311111 1111 113345677889999888775
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=8.8e-06 Score=59.95 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..++++|.+|+|||||+|+|....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998754
No 386
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.09 E-value=5.2e-06 Score=63.93 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=39.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (165)
.+.|.+||.||+||||+||.|.+++.-.. ++|.|-+-...++.+.. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCC
Confidence 68999999999999999999999875322 33333333344444444 467779999
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.09 E-value=1e-05 Score=54.68 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=54.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ--------------------- 67 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~--------------------- 67 (165)
||+|.|++|+||||++++++..-... ..+ -..+.+....-++...-|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~--v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLP--VGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGG--EEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCc--cceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 78999999999999999987432100 011 13344444445566666666676 331
Q ss_pred -cccccchhhcccc--ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 68 -ERFQSLGVAFYRG--ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 68 -~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
+.+.......++. .+.-++|+|--.+-- .....|...+...+.. ++|++.+.-+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mE-l~~~~F~~~v~~~l~s----~~~vi~vv~~~ 135 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKME-LKSPGFREAVEKLLDS----NKPVIGVVHKR 135 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STTC-CC-CHHHHHHHHHHCT----TSEEEEE--SS
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchhh-hcCHHHHHHHHHHHcC----CCcEEEEEecC
Confidence 1111111112222 133378888654311 0123355555555542 77888887776
No 388
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=1.3e-05 Score=67.92 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=60.8
Q ss_pred EEEEcCCCCChHHHHHHHhcC-CCCCCCCCce--eeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhc--
Q 031126 11 VIILGDSGVGKTSLMNQYVNK-KFSNQYKATI--GADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAF-- 77 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~-- 77 (165)
.+|+|++|+||||++..--.. .+........ +.....+..-+.+ +-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 489999999999987643211 1111111100 0000111122222 34577988822 122233333
Q ss_pred -------cccccEEEEEEeCCChhh----H--HH---HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 78 -------YRGADCCVLVYDVNSMKS----F--DN---LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 78 -------~~~~~~~i~v~d~~~~~s----~--~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
.+..|++|+.+|+.+.-+ . .. +..=+.++...+.- ..|+++++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEecccccc
Confidence 245799999999864211 1 11 11224445444443 889999999999975
No 389
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.96 E-value=8.7e-05 Score=50.21 Aligned_cols=67 Identities=24% Similarity=0.178 Sum_probs=39.0
Q ss_pred EEEEEEeCCCccccccchh----hc--cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGV----AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
..+.++|++|......... .+ ....+.+++|+|...... ...+...+.+.. + ...+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence 4577899999643322111 11 134899999999875432 223344443322 2 246777999987
Q ss_pred CCC
Q 031126 131 GGN 133 (165)
Q Consensus 131 ~~~ 133 (165)
...
T Consensus 153 ~~~ 155 (173)
T cd03115 153 ARG 155 (173)
T ss_pred CCc
Confidence 653
No 390
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.96 E-value=1.5e-06 Score=60.73 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=46.9
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCCh-------hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM-------KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
+.+.+.+.|..|+..-+..|...+++.-.+++.+..+.- ...+.+.+-...+.-.....-+.+.++|++.||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 445678889999988888888888876666554433210 0011122222222222222333488999999999
Q ss_pred CCCCC
Q 031126 128 DVDGG 132 (165)
Q Consensus 128 Dl~~~ 132 (165)
|+.++
T Consensus 277 DlLEe 281 (359)
T KOG0085|consen 277 DLLEE 281 (359)
T ss_pred hhhhh
Confidence 99765
No 391
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=0.00011 Score=48.58 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=22.6
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCC
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 91 (165)
+-+.++|++|... ....++..+|-++++....
T Consensus 92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 5678889988542 2234778899888887765
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00016 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-.++++|++|+||||++..|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 393
>PRK13695 putative NTPase; Provisional
Probab=97.87 E-value=0.00014 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
++++++|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 394
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.86 E-value=1.9e-05 Score=57.54 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=47.6
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceece
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~ 152 (165)
.....++.+|++++|+|+..+.+.... ++..+ .. +.|+++|.||+|+.+. .....+.+.+.. ....+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~-----~kp~IiVlNK~DL~~~--~~~~~~~~~~~~-~~~~v 80 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RG-----NKPRLIVLNKADLADP--AVTKQWLKYFEE-KGIKA 80 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HC-----CCCEEEEEEccccCCH--HHHHHHHHHHHH-cCCeE
Confidence 344567889999999999876543321 11111 11 6799999999999643 222333333322 22346
Q ss_pred eeeccccccCC
Q 031126 153 THTHGHTNTHS 163 (165)
Q Consensus 153 ~~~s~~~~~~~ 163 (165)
+..|++++.+.
T Consensus 81 i~iSa~~~~gi 91 (276)
T TIGR03596 81 LAINAKKGKGV 91 (276)
T ss_pred EEEECCCcccH
Confidence 77888877654
No 395
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=59.79 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=41.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.+.+++.|+|.|++||||+||+|..+..-.. ....|.+.....++.+. .+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 4568999999999999999999998765222 22333444444555444 5788899993
No 396
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.84 E-value=1.4e-05 Score=56.06 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=38.5
Q ss_pred EEEEEeCCCccccccchh------hccccccEEEEEEeC------CChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEe
Q 031126 58 TLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDV------NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125 (165)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (165)
.+.++|.|||-++..... ..+++.+.-+.++.. +++..+ +..++..+.-++.- ..|-+=|..
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~m----elphVNvlS 171 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHM----ELPHVNVLS 171 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhh----cccchhhhh
Confidence 467889999876554332 223445544444333 344333 23333333333322 668888999
Q ss_pred CCCCCCC
Q 031126 126 KIDVDGG 132 (165)
Q Consensus 126 K~Dl~~~ 132 (165)
|+|+...
T Consensus 172 K~Dl~~~ 178 (290)
T KOG1533|consen 172 KADLLKK 178 (290)
T ss_pred HhHHHHh
Confidence 9998664
No 397
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.82 E-value=0.00017 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998654
No 398
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.80 E-value=2.5e-05 Score=52.81 Aligned_cols=78 Identities=15% Similarity=0.012 Sum_probs=46.4
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceece
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~ 152 (165)
.....++.+|.+++|+|+..+...... . +..... ++|+++|.||+|+.+. .......+.+... ...+
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~-----~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~-~~~v 78 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILG-----NKPRIIVLNKADLADP--KKTKKWLKYFESK-GEKV 78 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhc-----CCCEEEEEehhhcCCh--HHHHHHHHHHHhc-CCeE
Confidence 334567889999999999876443221 1 111111 5689999999999643 2222222222221 1246
Q ss_pred eeeccccccCC
Q 031126 153 THTHGHTNTHS 163 (165)
Q Consensus 153 ~~~s~~~~~~~ 163 (165)
+..|++++.+.
T Consensus 79 i~iSa~~~~gi 89 (171)
T cd01856 79 LFVNAKSGKGV 89 (171)
T ss_pred EEEECCCcccH
Confidence 77888887664
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.79 E-value=0.0002 Score=52.17 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=39.3
Q ss_pred EEEEEEeCCCccccccchhh-------cc-----ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEE
Q 031126 57 FTLQIWDTAGQERFQSLGVA-------FY-----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (165)
+.+.++||||.......... .. ..+|..++|+|+.... +.+ .....+.+.. + +--+|.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~------~-~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV------G-LTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC------C-CCEEEE
Confidence 57889999996543322211 11 2378999999997532 222 2233333222 1 347899
Q ss_pred eCCCCCCC
Q 031126 125 NKIDVDGG 132 (165)
Q Consensus 125 nK~Dl~~~ 132 (165)
||.|....
T Consensus 225 TKlDe~~~ 232 (272)
T TIGR00064 225 TKLDGTAK 232 (272)
T ss_pred EccCCCCC
Confidence 99999665
No 400
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=1.1e-05 Score=58.79 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=81.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCC---CCCCCCceeeeEEEE-----------------------------EEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTK-----------------------------EVQF 52 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------------------~~~~ 52 (165)
++-.+||.-+|+...||||+++++.+-+. ...-.+..+....+. .+..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45679999999999999999998865321 111111110000000 0000
Q ss_pred CCe------EEEEEEEeCCCccccccchhhccccccEEEEEEeCCC----hhhHHHHHHHHHHHHHHcCCCCCCCCcEEE
Q 031126 53 EDR------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----MKSFDNLNNWREEFLIQASPSDPDNFPFVV 122 (165)
Q Consensus 53 ~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (165)
.+. .-.+.+.|+||++-.-.....-..-.|++++.+..+. +.+-+.+. .-++.+ =+.+++
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM~--------Lkhiii 184 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIMK--------LKHIII 184 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHhh--------hceEEE
Confidence 110 1246788999988665544333344578888777653 33333221 112222 237899
Q ss_pred EEeCCCCCCCCCchhc-hhHHhh---hhcceeceeeeccccccCCC
Q 031126 123 LGNKIDVDGGNSRVVC-IFCDVF---SSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 123 v~nK~Dl~~~~~~~~~-~~~~~~---~~~~~i~~~~~s~~~~~~~~ 164 (165)
+-||+|+..++...+. +..+.| ......+.+..||...||++
T Consensus 185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId 230 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNID 230 (466)
T ss_pred EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChH
Confidence 9999999876322222 111222 12244467888888888763
No 401
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.9e-05 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00029 Score=55.49 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-.++|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988754
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.73 E-value=0.00015 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...-++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356789999999999999887753
No 404
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.72 E-value=2.9e-05 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.795 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.||+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 405
>PRK13796 GTPase YqeH; Provisional
Probab=97.72 E-value=5.9e-05 Score=57.17 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=49.9
Q ss_pred ccccchhhcccccc-EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chhchhHHhhh
Q 031126 69 RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVVCIFCDVFS 145 (165)
Q Consensus 69 ~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~ 145 (165)
+|..... .+...+ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+..... ....++.+.+.
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 4444333 334445 888999987732 334555555433 679999999999965321 11222323222
Q ss_pred hccee---ceeeeccccccCCC
Q 031126 146 SIITL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 146 ~~~~i---~~~~~s~~~~~~~~ 164 (165)
....+ ..+.+||+++.+++
T Consensus 127 k~~g~~~~~v~~vSAk~g~gI~ 148 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGHGID 148 (365)
T ss_pred HhcCCCcCcEEEEECCCCCCHH
Confidence 22222 47889999988754
No 406
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=3.3e-05 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
No 407
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.70 E-value=4.3e-05 Score=42.57 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+|.|+.|+||||+++.+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998764
No 408
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.69 E-value=3.3e-05 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 409
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.68 E-value=7e-05 Score=54.60 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=37.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC----CCceeeeEEEEE-EEECCeEEEEEEEeCCCc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKE-VQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~ 67 (165)
.+...++.|+|-||+|||||+|.+......... ....|.+..... +.+...+ .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 346789999999999999999988764432221 111122222222 3333333 3667799993
No 410
>PRK07261 topology modulation protein; Provisional
Probab=97.67 E-value=4.2e-05 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+|+|+|.+|||||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 411
>PRK14974 cell division protein FtsY; Provisional
Probab=97.67 E-value=0.00079 Score=50.41 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=38.1
Q ss_pred EEEEEEeCCCccccccch----hhcc--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 57 FTLQIWDTAGQERFQSLG----VAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
..+.++||+|........ .... -..|..++|+|+.... +.......+.... + .--++.||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~------~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV------G-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC------C-CCEEEEeeecCC
Confidence 458899999965322211 1111 2478889999997643 2222233333221 2 346899999996
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 64
No 412
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00026 Score=50.38 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=68.4
Q ss_pred eEEEEEcCCCC--ChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 9 LKVIILGDSGV--GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 9 ~~i~i~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..++++|-+|+ ||.+++.+|....+...........+...++... ...+.+-+...- .+ +........+..-++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de-~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DE-KFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-ch-hccCCcccccceeeE
Confidence 46799999998 9999999999887764443333222222222111 111222221111 12 221111223445688
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+++||.+....+..++.|+..-..... + ..+.++||.|....
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsf-----d-illcignkvdrvph 124 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSF-----D-ILLCIGNKVDRVPH 124 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccc-----h-hheecccccccccc
Confidence 999999999999999999874432211 1 23568999998654
No 413
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=5.3e-05 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (165)
|+|+|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999997643
No 414
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.59 E-value=8.2e-05 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFS 34 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~ 34 (165)
.++|+|++|||||||++++-.-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 5799999999999999999766543
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=7.1e-05 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++|+|++|||||||++-+-.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999987554
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.54 E-value=0.0011 Score=43.34 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=59.4
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC
Q 031126 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS 92 (165)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 92 (165)
.-|.+|+|||++.-.+...-. ....+..-.+.. .....-.+.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence 456889999998665542210 000000000000 00001115688999998543 333467888999999988874
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 93 MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
.+.......+..+..... ..++.+|.|+++-.
T Consensus 79 -~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQLR-----VLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCH
Confidence 444444444555543322 45788999999743
No 417
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.54 E-value=9.3e-05 Score=42.33 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+++|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.53 E-value=0.00091 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++++|+.|+|||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 468999999999999999988654
No 419
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.53 E-value=0.00011 Score=53.93 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=46.6
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceece
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~ 152 (165)
.....++.+|++++|+|+..+.+.+. .++.. ... +.|+++|.||+|+.+. .....+.+.+.+. ...+
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~---~~~-----~kp~iiVlNK~DL~~~--~~~~~~~~~~~~~-~~~v 83 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDK---IIG-----NKPRLLILNKSDLADP--EVTKKWIEYFEEQ-GIKA 83 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHH---HhC-----CCCEEEEEEchhcCCH--HHHHHHHHHHHHc-CCeE
Confidence 34456788999999999987654332 11222 111 5699999999999643 2222232223221 2345
Q ss_pred eeeccccccCC
Q 031126 153 THTHGHTNTHS 163 (165)
Q Consensus 153 ~~~s~~~~~~~ 163 (165)
+..|++++.+.
T Consensus 84 i~vSa~~~~gi 94 (287)
T PRK09563 84 LAINAKKGQGV 94 (287)
T ss_pred EEEECCCcccH
Confidence 77788877653
No 420
>PF05729 NACHT: NACHT domain
Probab=97.52 E-value=0.00025 Score=47.14 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++|.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988754
No 421
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.0001 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHh
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~ 29 (165)
.+..++++|.+|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999987764
No 422
>PRK01889 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.0004 Score=52.52 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=49.1
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
..++|.+++|+++..+.....+..++...... +++.++|+||+||.+...... +....+ ......+..|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~~~~~~-~~~~~~--~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCEDAEEKI-AEVEAL--APGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCCHHHHH-HHHHHh--CCCCcEEEEEC
Confidence 46789999999997655555666666555443 678899999999975411111 222222 23446788888
Q ss_pred ccccCC
Q 031126 158 HTNTHS 163 (165)
Q Consensus 158 ~~~~~~ 163 (165)
+++.+.
T Consensus 180 ~~g~gl 185 (356)
T PRK01889 180 LDGEGL 185 (356)
T ss_pred CCCccH
Confidence 887654
No 423
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.50 E-value=0.00071 Score=41.69 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=48.4
Q ss_pred EEEEc-CCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 11 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
|++.| ..|+||||+...+...-.. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 6699999987766432110 00111 11111111 567889999865332 3366788999999888
Q ss_pred CCChhhHHHHHHHHH
Q 031126 90 VNSMKSFDNLNNWRE 104 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~ 104 (165)
.+ ..+.....+++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 345555555555
No 424
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.48 E-value=6.6e-05 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.47 E-value=0.00015 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+...|+|.|++|||||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999988753
No 426
>PRK14530 adenylate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 427
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.45 E-value=0.00012 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 468999999999999999887653
No 428
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.0001 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.....||+|.|-||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35678999999999999999999974
No 429
>PRK06217 hypothetical protein; Validated
Probab=97.44 E-value=0.00013 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+|+|+|.+||||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 430
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.44 E-value=0.00017 Score=50.36 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.3
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+++..-|+|+|++|||||||++.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34557799999999999999999875
No 431
>PRK04195 replication factor C large subunit; Provisional
Probab=97.43 E-value=0.00053 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...++|.|++|+||||+++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 432
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00011 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+++|++|||||||++.|-..
T Consensus 36 TAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhh
Confidence 489999999999999888554
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00013 Score=46.72 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999765
No 434
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00019 Score=50.11 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=23.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
++.+..-|+|+|++|||||||++.|....
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 34566778899999999999999997543
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.41 E-value=0.0019 Score=38.70 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=43.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-hhhccccccEEEEEEe
Q 031126 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD 89 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 89 (165)
+++.|.+|+||||+...+...-.... . ....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-K---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 57889999999999887764321000 0 111111 5778899986544321 1345667899988888
Q ss_pred CCCh
Q 031126 90 VNSM 93 (165)
Q Consensus 90 ~~~~ 93 (165)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7753
No 436
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00018 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~ 33 (165)
.+++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999986654
No 437
>PRK03839 putative kinase; Provisional
Probab=97.39 E-value=0.00015 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+|+|+|.|||||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 438
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.37 E-value=0.00017 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.|+++|++|+|||+|+..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 439
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.37 E-value=0.0017 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.=.+|.|--|||||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34578899999999999999854
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.37 E-value=0.00018 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 441
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.37 E-value=0.00018 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+|+|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 442
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.35 E-value=0.00019 Score=44.64 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 031126 9 LKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (165)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.35 E-value=0.00017 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998664
No 444
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.34 E-value=6.9e-05 Score=56.42 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~ 34 (165)
+.+.+-|.++|.|++||||+||+|.....-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 456789999999999999999999887653
No 445
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.00019 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+|++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999988754
No 446
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.00018 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 031126 11 VIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (165)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999997644
No 447
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00019 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 448
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.33 E-value=0.00021 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.|.|+|..|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 449
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.32 E-value=0.00029 Score=54.66 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=54.8
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS 145 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 145 (165)
+.|+++| ..++.+|+++.++|+.++-.|. .+..+.++... .+..+|++||.||... .+...+++.|.
T Consensus 163 E~WRQLW-RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~--------~K~~~LLvNKaDLl~~--~qr~aWa~YF~ 231 (562)
T KOG1424|consen 163 EIWRQLW-RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP--------SKANVLLVNKADLLPP--EQRVAWAEYFR 231 (562)
T ss_pred HHHHHHH-HHHhhcceEEEEeecCCccccCChhHHHHHhcccc--------ccceEEEEehhhcCCH--HHHHHHHHHHH
Confidence 3455555 4678999999999999986663 34455555432 4677999999999987 77777766664
Q ss_pred hcceeceeeecccc
Q 031126 146 SIITLSHTHTHGHT 159 (165)
Q Consensus 146 ~~~~i~~~~~s~~~ 159 (165)
.-. |+++--||..
T Consensus 232 ~~n-i~~vf~SA~~ 244 (562)
T KOG1424|consen 232 QNN-IPVVFFSALA 244 (562)
T ss_pred hcC-ceEEEEeccc
Confidence 332 5555555543
No 450
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.0041 Score=43.95 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=30.8
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCC-CcEEEEEeCCCCC
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGNKIDVD 130 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~ 130 (165)
...+++|.+|+|+|.+.+ ++....+.. ++.... . .++.+|.||.|..
T Consensus 151 g~~~~vD~vivVvDpS~~-sl~taeri~-~L~~el------g~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSYK-SLRTAERIK-ELAEEL------GIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcHH-HHHHHHHHH-HHHHHh------CCceEEEEEeeccch
Confidence 345789999999998853 343333322 222221 4 6899999999965
No 451
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.31 E-value=0.00031 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-+.|+|.+|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999854
No 452
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.28 E-value=0.0042 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
--|+|.|.+||||||+++.+-.
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999953
No 453
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.28 E-value=0.0011 Score=42.96 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 454
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00017 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..=+++.|++|+||||+++.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999998775
No 455
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+|+++|+|||||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999753
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.27 E-value=0.00027 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-.++|+|++|||||||++.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999998764
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.27 E-value=0.00023 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|.|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 458
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.27 E-value=0.0049 Score=38.29 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeC
Q 031126 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (165)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (165)
.+.++|+|+.... .....+..+|.++++.+.+. .+...+..++..+...... ....+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence 5788899986543 33356788999998887664 5566666666666554321 02356677775
No 459
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.26 E-value=0.00049 Score=46.66 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=35.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII 148 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (165)
|++++|+|+..+.+... ..+...+ . .... +.|+|+|.||+|+.+. .....+.+.+.+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~-~-l~~~---~kp~IlVlNK~DL~~~--~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAV-L-QAGG---NKKLVLVLNKIDLVPK--ENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHH-H-hccC---CCCEEEEEehhhcCCH--HHHHHHHHHHHhhC
Confidence 78999999987643321 1112221 1 1111 6799999999999764 44545555554443
No 460
>PRK10867 signal recognition particle protein; Provisional
Probab=97.26 E-value=0.0023 Score=49.54 Aligned_cols=66 Identities=24% Similarity=0.179 Sum_probs=36.8
Q ss_pred EEEEEEeCCCccccccchh----hc--cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGV----AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.+.++||+|........- .+ .-..+.+++|+|+... ++.......+.... + ..-+|.||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 4588999999543221111 11 1246788999998753 23333344444321 1 235677999975
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 254 ~r 255 (433)
T PRK10867 254 AR 255 (433)
T ss_pred cc
Confidence 43
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00055 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...++++|++|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988753
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.00025 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..=|+|+|++|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998753
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.26 E-value=0.00027 Score=48.06 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-++|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.25 E-value=0.00031 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~ 29 (165)
.-.++++|+.|||||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999886
No 465
>PRK13949 shikimate kinase; Provisional
Probab=97.25 E-value=0.00029 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+|+|+|++||||||+...+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998764
No 466
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.24 E-value=0.0024 Score=49.41 Aligned_cols=66 Identities=24% Similarity=0.166 Sum_probs=38.1
Q ss_pred EEEEEEeCCCccccccchhhc------cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.+.++||+|........... .-..+.+++|+|+... ++...+...+.... + ..-+|.||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v------~-i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL------G-LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 458899999954332211111 1247888999998754 33444444544322 1 235679999975
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 253 ~~ 254 (428)
T TIGR00959 253 AR 254 (428)
T ss_pred cc
Confidence 43
No 467
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.24 E-value=0.0003 Score=47.88 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|+|||||+|-+.+=
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 36899999999999999988753
No 468
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0041 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
--++|+|+.|+||||.+..|..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999988764
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00028 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-|+|+|.+||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00039 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-|+|+|++|||||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999999765
No 471
>PRK14531 adenylate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988643
No 472
>PRK00625 shikimate kinase; Provisional
Probab=97.22 E-value=0.00031 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.00029 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++|+|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987754
No 474
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.00037 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+...-|+++|.+||||||+.+.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3557899999999999999998864
No 475
>PRK07429 phosphoribulokinase; Provisional
Probab=97.22 E-value=0.00041 Score=51.80 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
|.....+.+-|.|.|.+|||||||.+.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 555667789999999999999999998874
No 476
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.19 E-value=0.00031 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=17.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.....++|.|++|+|||+|++++...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999987643
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.19 E-value=0.00033 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..+|+|+|++|||||||++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4789999999999999999998653
No 478
>PRK02496 adk adenylate kinase; Provisional
Probab=97.19 E-value=0.00038 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+++|+|+|||||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 479
>PLN03025 replication factor C subunit; Provisional
Probab=97.18 E-value=0.0024 Score=47.59 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..++++.|++|+||||++..+...
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 480
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.00043 Score=47.03 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-|+|.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 66888999999999999999753
No 481
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.16 E-value=0.0027 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++|.|++|+||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 58999999999999999987553
No 482
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.00035 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.--++|.|++|+|||++++++...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999865
No 483
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.15 E-value=0.00045 Score=49.04 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+++|+|+|+|||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998653
No 484
>PRK06547 hypothetical protein; Provisional
Probab=97.15 E-value=0.00048 Score=46.74 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.....|+|.|.+|||||||.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678889999999999999999754
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.15 E-value=0.00038 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999976
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.15 E-value=0.00033 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+|+|+|.|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 487
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00039 Score=47.88 Aligned_cols=21 Identities=48% Similarity=0.775 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 478999999999999998865
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.14 E-value=0.00036 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..+|+|+|.+|||||||++.++..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998543
No 489
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.14 E-value=0.00039 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..+++|.|.+|||||||++.++..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 490
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.13 E-value=0.00046 Score=48.44 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998653
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0004 Score=48.98 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|+|++|+|||||++.+-.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999876
No 492
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.12 E-value=0.00038 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 031126 11 VIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~ 30 (165)
|.|.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67999999999999998864
No 493
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.11 E-value=0.00049 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367999999999999999998653
No 494
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.11 E-value=0.00043 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+|+|+|||||||+..++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 495
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.10 E-value=0.0005 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|+.|||||||++.+.+-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 496
>PLN02200 adenylate kinase family protein
Probab=97.10 E-value=0.0006 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+..|+|+|.|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 497
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.10 E-value=0.00052 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999998653
No 498
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00045 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 499
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.10 E-value=0.00053 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 500
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.09 E-value=0.00053 Score=47.65 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=.++|+|+.|+|||||++.+.+--
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998653
Done!