Query 031126
Match_columns 165
No_of_seqs 128 out of 1521
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.2E-37 3.1E-41 212.8 14.1 153 6-164 11-164 (216)
2 3tw8_B RAS-related protein RAB 100.0 2.2E-32 7.5E-37 185.0 16.9 158 1-164 2-159 (181)
3 2fu5_C RAS-related protein RAB 100.0 7.1E-33 2.4E-37 188.1 13.4 158 1-164 1-159 (183)
4 3tkl_A RAS-related protein RAB 100.0 5.5E-32 1.9E-36 185.5 17.9 157 2-164 10-167 (196)
5 1ky3_A GTP-binding protein YPT 100.0 1.8E-32 6E-37 185.6 14.3 164 1-164 1-166 (182)
6 2bcg_Y Protein YP2, GTP-bindin 100.0 9.1E-32 3.1E-36 186.1 18.0 159 1-164 1-159 (206)
7 2bme_A RAB4A, RAS-related prot 100.0 4.9E-32 1.7E-36 184.3 16.2 159 1-164 3-161 (186)
8 3kkq_A RAS-related protein M-R 100.0 9.3E-32 3.2E-36 182.6 17.5 158 2-164 12-170 (183)
9 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-31 5.3E-36 180.4 18.4 159 4-164 3-162 (177)
10 2ew1_A RAS-related protein RAB 100.0 4.7E-32 1.6E-36 187.2 16.0 156 3-164 21-177 (201)
11 1vg8_A RAS-related protein RAB 100.0 6.8E-32 2.3E-36 186.6 16.6 162 1-164 1-163 (207)
12 2fg5_A RAB-22B, RAS-related pr 100.0 1.2E-31 4E-36 183.7 15.9 158 2-164 17-174 (192)
13 1x3s_A RAS-related protein RAB 100.0 1.7E-31 5.8E-36 182.8 16.6 159 1-164 8-166 (195)
14 1z0f_A RAB14, member RAS oncog 100.0 1.5E-31 5.2E-36 180.5 16.2 158 2-164 9-166 (179)
15 2efe_B Small GTP-binding prote 100.0 3.9E-31 1.3E-35 179.0 17.9 157 3-164 7-163 (181)
16 2fn4_A P23, RAS-related protei 100.0 1.8E-31 6E-36 180.5 16.1 158 1-164 2-160 (181)
17 3t5g_A GTP-binding protein RHE 100.0 2.4E-31 8.3E-36 180.3 16.8 155 5-164 3-157 (181)
18 1ek0_A Protein (GTP-binding pr 100.0 2.9E-31 9.9E-36 177.7 16.7 154 7-164 2-157 (170)
19 2hup_A RAS-related protein RAB 100.0 1.1E-31 3.7E-36 185.3 14.9 155 4-164 25-181 (201)
20 2a5j_A RAS-related protein RAB 100.0 2.2E-31 7.6E-36 182.2 15.9 157 3-164 16-172 (191)
21 1g16_A RAS-related protein SEC 100.0 1.9E-31 6.6E-36 178.7 15.2 152 7-164 2-153 (170)
22 1zbd_A Rabphilin-3A; G protein 100.0 8.2E-31 2.8E-35 180.8 18.7 156 4-164 4-159 (203)
23 2gf9_A RAS-related protein RAB 100.0 5.2E-31 1.8E-35 180.0 17.5 155 4-164 18-173 (189)
24 1r2q_A RAS-related protein RAB 100.0 3.7E-31 1.3E-35 177.2 16.5 155 5-164 3-157 (170)
25 2il1_A RAB12; G-protein, GDP, 100.0 1.4E-31 4.7E-36 183.5 14.4 157 2-164 20-178 (192)
26 1z08_A RAS-related protein RAB 100.0 1.8E-31 6.2E-36 178.9 14.6 155 5-164 3-157 (170)
27 1z0j_A RAB-22, RAS-related pro 100.0 7.1E-31 2.4E-35 175.9 17.4 155 5-164 3-157 (170)
28 2g6b_A RAS-related protein RAB 100.0 9.9E-31 3.4E-35 176.9 17.6 156 4-164 6-162 (180)
29 3reg_A RHO-like small GTPase; 100.0 8.6E-31 2.9E-35 179.6 17.2 155 4-164 19-176 (194)
30 3cbq_A GTP-binding protein REM 100.0 2.6E-31 9E-36 182.6 14.4 157 3-164 18-176 (195)
31 1z2a_A RAS-related protein RAB 100.0 5.9E-31 2E-35 176.0 15.6 153 6-164 3-155 (168)
32 1z06_A RAS-related protein RAB 100.0 7E-31 2.4E-35 179.3 15.8 155 5-163 17-175 (189)
33 3dz8_A RAS-related protein RAB 100.0 3.1E-32 1.1E-36 186.4 9.0 158 2-164 17-174 (191)
34 2y8e_A RAB-protein 6, GH09086P 100.0 1.6E-30 5.6E-35 175.5 17.0 154 6-164 12-165 (179)
35 2oil_A CATX-8, RAS-related pro 100.0 8.5E-31 2.9E-35 179.4 15.6 157 3-164 20-176 (193)
36 3q3j_B RHO-related GTP-binding 100.0 4.5E-31 1.5E-35 183.9 14.3 153 4-162 23-188 (214)
37 2o52_A RAS-related protein RAB 100.0 4.3E-31 1.5E-35 182.1 14.0 155 4-164 21-176 (200)
38 3q85_A GTP-binding protein REM 100.0 8E-31 2.7E-35 175.7 14.6 153 8-164 2-155 (169)
39 3bc1_A RAS-related protein RAB 100.0 1.4E-30 4.7E-35 177.9 15.9 157 4-164 7-173 (195)
40 2p5s_A RAS and EF-hand domain 100.0 3.4E-31 1.2E-35 182.4 12.7 156 5-164 25-185 (199)
41 4dsu_A GTPase KRAS, isoform 2B 100.0 3.3E-30 1.1E-34 175.5 17.4 153 6-164 2-154 (189)
42 3cph_A RAS-related protein SEC 100.0 5.1E-30 1.7E-34 177.9 18.4 154 5-164 17-170 (213)
43 3c5c_A RAS-like protein 12; GD 100.0 1.3E-30 4.5E-35 178.0 15.0 155 4-163 17-173 (187)
44 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-30 7.5E-35 176.5 15.8 151 4-164 16-168 (184)
45 1gwn_A RHO-related GTP-binding 100.0 1E-30 3.6E-35 181.0 14.2 157 1-163 21-191 (205)
46 1c1y_A RAS-related protein RAP 100.0 2.5E-30 8.5E-35 172.7 15.5 151 8-164 3-155 (167)
47 3cpj_B GTP-binding protein YPT 100.0 2.4E-30 8.3E-35 181.1 15.9 154 5-164 10-164 (223)
48 3oes_A GTPase rhebl1; small GT 100.0 8.4E-31 2.9E-35 180.7 12.8 154 6-164 22-175 (201)
49 2atx_A Small GTP binding prote 100.0 4.4E-30 1.5E-34 176.0 16.3 154 5-164 15-181 (194)
50 2iwr_A Centaurin gamma 1; ANK 100.0 6.3E-30 2.1E-34 172.8 16.5 152 5-164 4-157 (178)
51 2hxs_A RAB-26, RAS-related pro 100.0 6.4E-31 2.2E-35 177.5 11.6 157 5-164 3-161 (178)
52 2nzj_A GTP-binding protein REM 100.0 4.3E-30 1.5E-34 172.9 15.3 152 7-164 3-157 (175)
53 3l0i_B RAS-related protein RAB 100.0 3.4E-32 1.2E-36 187.4 5.0 157 2-164 27-184 (199)
54 1kao_A RAP2A; GTP-binding prot 100.0 3.4E-30 1.2E-34 171.9 14.3 151 8-163 3-153 (167)
55 3gj0_A GTP-binding nuclear pro 100.0 1.5E-30 5.1E-35 181.9 13.0 154 3-164 10-163 (221)
56 3clv_A RAB5 protein, putative; 100.0 9.7E-30 3.3E-34 174.9 16.5 152 5-164 4-192 (208)
57 3q72_A GTP-binding protein RAD 100.0 5.1E-30 1.8E-34 171.3 14.7 151 8-164 2-152 (166)
58 1u8z_A RAS-related protein RAL 100.0 6.3E-30 2.1E-34 170.7 15.0 153 7-164 3-155 (168)
59 2a9k_A RAS-related protein RAL 100.0 6.5E-30 2.2E-34 173.6 15.3 156 4-164 14-169 (187)
60 2q3h_A RAS homolog gene family 100.0 6.5E-30 2.2E-34 176.0 15.3 155 4-164 16-183 (201)
61 2bov_A RAla, RAS-related prote 100.0 1.1E-29 3.8E-34 175.2 16.1 155 5-164 11-165 (206)
62 1m7b_A RND3/RHOE small GTP-bin 100.0 5.8E-30 2E-34 174.2 14.5 153 5-163 4-170 (184)
63 4djt_A GTP-binding nuclear pro 100.0 4.3E-30 1.5E-34 179.0 14.1 156 4-164 7-163 (218)
64 2f7s_A C25KG, RAS-related prot 100.0 1.8E-30 6.3E-35 180.8 11.7 156 4-164 21-187 (217)
65 2g3y_A GTP-binding protein GEM 100.0 6.4E-30 2.2E-34 177.7 14.1 155 4-164 33-191 (211)
66 3con_A GTPase NRAS; structural 100.0 4.2E-29 1.4E-33 170.5 17.4 155 4-164 17-171 (190)
67 2ce2_X GTPase HRAS; signaling 100.0 4.4E-29 1.5E-33 166.2 16.8 151 8-164 3-153 (166)
68 2yc2_C IFT27, small RAB-relate 100.0 2.1E-30 7.2E-35 179.0 10.6 156 6-164 18-180 (208)
69 2gco_A H9, RHO-related GTP-bin 100.0 2.5E-29 8.4E-34 173.4 15.9 154 5-164 22-188 (201)
70 2j0v_A RAC-like GTP-binding pr 100.0 9E-30 3.1E-34 176.7 13.8 152 5-164 6-168 (212)
71 2atv_A RERG, RAS-like estrogen 100.0 1.8E-29 6.1E-34 173.3 14.7 153 6-164 26-179 (196)
72 2j1l_A RHO-related GTP-binding 100.0 1.4E-29 4.6E-34 176.3 14.1 153 6-164 32-197 (214)
73 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.2E-29 7.5E-34 171.0 14.7 153 6-164 3-168 (186)
74 4bas_A ADP-ribosylation factor 100.0 4.3E-29 1.5E-33 171.4 16.1 156 3-164 12-177 (199)
75 2gf0_A GTP-binding protein DI- 100.0 2.5E-29 8.7E-34 172.6 14.7 156 4-164 4-159 (199)
76 2erx_A GTP-binding protein DI- 100.0 5.5E-29 1.9E-33 166.8 14.2 154 7-164 2-155 (172)
77 2fv8_A H6, RHO-related GTP-bin 100.0 8E-29 2.8E-33 171.5 15.2 153 6-164 23-188 (207)
78 4gzl_A RAS-related C3 botulinu 100.0 4.7E-29 1.6E-33 172.5 13.7 154 5-164 27-193 (204)
79 1zd9_A ADP-ribosylation factor 100.0 1.2E-28 4.3E-33 168.2 15.1 151 5-164 19-173 (188)
80 3t1o_A Gliding protein MGLA; G 100.0 1E-29 3.4E-34 174.1 9.6 153 3-164 9-180 (198)
81 2cjw_A GTP-binding protein GEM 100.0 1.6E-28 5.3E-33 168.4 15.3 153 6-164 4-160 (192)
82 3bwd_D RAC-like GTP-binding pr 100.0 5E-30 1.7E-34 173.7 7.8 153 6-164 6-169 (182)
83 1ksh_A ARF-like protein 2; sma 100.0 1.9E-28 6.5E-33 166.7 15.6 149 6-164 16-168 (186)
84 2h57_A ADP-ribosylation factor 100.0 2.7E-28 9.3E-33 166.6 15.8 154 4-164 17-175 (190)
85 1m2o_B GTP-binding protein SAR 100.0 3.4E-28 1.2E-32 166.4 16.2 149 6-164 21-180 (190)
86 1f6b_A SAR1; gtpases, N-termin 100.0 2.1E-28 7E-33 168.5 14.0 149 6-164 23-187 (198)
87 1r8s_A ADP-ribosylation factor 100.0 1.6E-28 5.3E-33 163.7 13.0 146 9-164 1-150 (164)
88 2h17_A ADP-ribosylation factor 100.0 1.5E-28 5.2E-33 166.7 13.0 151 4-164 17-171 (181)
89 1fzq_A ADP-ribosylation factor 100.0 2.6E-28 8.8E-33 165.7 13.5 149 6-164 14-166 (181)
90 1upt_A ARL1, ADP-ribosylation 100.0 8.9E-28 3E-32 161.0 15.4 151 6-164 5-157 (171)
91 1zj6_A ADP-ribosylation factor 100.0 2.2E-28 7.4E-33 166.7 12.5 149 6-164 14-166 (187)
92 2b6h_A ADP-ribosylation factor 100.0 3.7E-28 1.3E-32 166.5 13.6 149 6-164 27-179 (192)
93 2zej_A Dardarin, leucine-rich 100.0 4.2E-28 1.4E-32 165.0 10.5 147 8-161 2-162 (184)
94 2x77_A ADP-ribosylation factor 100.0 7.9E-28 2.7E-32 164.1 11.9 151 6-164 20-172 (189)
95 1moz_A ARL1, ADP-ribosylation 100.0 8.3E-28 2.8E-32 163.0 11.1 149 6-164 16-168 (183)
96 2f9l_A RAB11B, member RAS onco 99.9 2.7E-26 9.2E-31 157.9 17.3 153 6-163 3-155 (199)
97 3llu_A RAS-related GTP-binding 99.9 6E-28 2.1E-32 165.8 8.8 154 3-163 15-184 (196)
98 2fh5_B SR-beta, signal recogni 99.9 9E-27 3.1E-31 161.8 13.8 125 4-132 3-130 (214)
99 3th5_A RAS-related C3 botulinu 99.9 2.1E-29 7.2E-34 174.0 0.0 154 6-165 28-194 (204)
100 1oix_A RAS-related protein RAB 99.9 3.2E-26 1.1E-30 156.7 15.9 156 4-164 25-180 (191)
101 2wkq_A NPH1-1, RAS-related C3 99.9 1.5E-26 5E-31 170.2 14.8 153 6-164 153-318 (332)
102 2lkc_A Translation initiation 99.9 3.2E-27 1.1E-31 159.3 9.7 151 4-164 4-159 (178)
103 2wji_A Ferrous iron transport 99.9 1.1E-26 3.9E-31 155.4 10.2 143 8-164 3-153 (165)
104 3o47_A ADP-ribosylation factor 99.9 2.6E-26 9E-31 169.2 11.7 148 7-164 164-315 (329)
105 2qu8_A Putative nucleolar GTP- 99.9 5.8E-26 2E-30 159.4 12.1 154 2-164 23-193 (228)
106 3c5h_A Glucocorticoid receptor 99.9 1.6E-27 5.5E-32 170.1 3.8 156 3-164 14-243 (255)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 1.6E-25 5.4E-30 163.7 13.2 148 7-159 2-165 (307)
108 3lvq_E ARF-GAP with SH3 domain 99.9 7E-25 2.4E-29 169.6 16.6 149 6-164 320-472 (497)
109 1nrj_B SR-beta, signal recogni 99.9 6.4E-26 2.2E-30 157.9 8.1 150 5-163 9-171 (218)
110 2wjg_A FEOB, ferrous iron tran 99.9 1.2E-25 4E-30 153.0 8.6 145 6-164 5-157 (188)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-25 4.4E-30 163.8 9.2 141 10-160 1-159 (331)
112 2dyk_A GTP-binding protein; GT 99.9 1.5E-24 5E-29 143.9 12.3 140 9-164 2-150 (161)
113 2gj8_A MNME, tRNA modification 99.9 4.6E-25 1.6E-29 148.6 9.7 143 7-164 3-154 (172)
114 1svi_A GTP-binding protein YSX 99.9 3.8E-25 1.3E-29 151.3 8.7 146 6-164 21-183 (195)
115 3iby_A Ferrous iron transport 99.9 1.5E-25 5E-30 159.9 6.8 142 9-164 2-155 (256)
116 3a1s_A Iron(II) transport prot 99.9 4.2E-25 1.4E-29 157.8 9.1 145 6-164 3-155 (258)
117 3iev_A GTP-binding protein ERA 99.9 7.3E-24 2.5E-28 154.9 15.1 153 3-164 5-170 (308)
118 3i8s_A Ferrous iron transport 99.9 3.7E-25 1.3E-29 159.4 6.5 142 8-163 3-156 (274)
119 3dpu_A RAB family protein; roc 99.9 7.2E-25 2.5E-29 170.9 8.2 151 5-165 38-197 (535)
120 2cxx_A Probable GTP-binding pr 99.9 1.5E-25 5.2E-30 152.5 3.8 147 9-164 2-172 (190)
121 3pqc_A Probable GTP-binding pr 99.9 7.2E-24 2.5E-28 144.7 10.1 145 6-164 21-182 (195)
122 3b1v_A Ferrous iron uptake tra 99.9 1.3E-24 4.4E-29 156.2 5.5 143 7-164 2-152 (272)
123 3k53_A Ferrous iron transport 99.9 6.1E-24 2.1E-28 152.8 8.5 143 8-163 3-153 (271)
124 1wf3_A GTP-binding protein; GT 99.9 4.2E-23 1.4E-27 150.4 12.9 149 1-163 1-160 (301)
125 2ged_A SR-beta, signal recogni 99.9 6.2E-24 2.1E-28 145.1 7.7 118 6-132 46-171 (193)
126 4dhe_A Probable GTP-binding pr 99.9 7.9E-24 2.7E-28 147.7 7.0 149 6-164 27-199 (223)
127 2hjg_A GTP-binding protein ENG 99.9 1.7E-23 5.9E-28 159.5 8.7 149 6-164 173-337 (436)
128 3gee_A MNME, tRNA modification 99.9 1.1E-22 3.8E-27 156.0 10.1 146 7-164 232-386 (476)
129 3qq5_A Small GTP-binding prote 99.9 6.9E-23 2.3E-27 155.0 8.5 147 5-165 31-185 (423)
130 3j2k_7 ERF3, eukaryotic polype 99.9 8.9E-22 3E-26 150.1 13.8 151 5-164 14-213 (439)
131 3p26_A Elongation factor 1 alp 99.9 3.5E-22 1.2E-26 154.0 11.0 152 6-164 31-226 (483)
132 4dcu_A GTP-binding protein ENG 99.9 2.2E-22 7.4E-27 154.2 8.8 149 6-164 193-357 (456)
133 3def_A T7I23.11 protein; chlor 99.9 5.9E-21 2E-25 136.6 15.5 123 6-132 34-166 (262)
134 3sjy_A Translation initiation 99.9 3E-21 1E-25 145.8 14.3 152 4-164 4-180 (403)
135 3cb4_D GTP-binding protein LEP 99.9 1.2E-21 4.2E-26 153.6 11.7 147 7-164 3-170 (599)
136 2ywe_A GTP-binding protein LEP 99.9 3.4E-21 1.2E-25 151.0 13.8 149 5-164 3-172 (600)
137 2e87_A Hypothetical protein PH 99.9 1.1E-20 3.7E-25 140.7 14.7 149 6-164 165-324 (357)
138 1wb1_A Translation elongation 99.9 2.2E-21 7.6E-26 149.3 10.9 147 4-163 15-176 (482)
139 1zun_B Sulfate adenylate trans 99.9 1.6E-20 5.6E-25 143.0 15.0 151 5-164 21-212 (434)
140 1zo1_I IF2, translation initia 99.9 1.7E-22 5.9E-27 155.3 3.5 150 6-165 2-156 (501)
141 3izy_P Translation initiation 99.8 4.4E-23 1.5E-27 159.7 -0.5 149 7-164 3-156 (537)
142 1xzp_A Probable tRNA modificat 99.8 1.3E-21 4.3E-26 150.3 7.5 142 7-164 242-393 (482)
143 1jny_A EF-1-alpha, elongation 99.8 2.8E-22 9.4E-27 152.8 3.6 156 6-164 4-201 (435)
144 1lnz_A SPO0B-associated GTP-bi 99.8 9.1E-22 3.1E-26 145.3 6.2 150 9-164 159-318 (342)
145 3izq_1 HBS1P, elongation facto 99.8 3.3E-21 1.1E-25 151.9 9.6 154 5-164 164-360 (611)
146 2xtp_A GTPase IMAP family memb 99.8 8E-21 2.7E-25 135.6 10.7 121 5-132 19-154 (260)
147 1r5b_A Eukaryotic peptide chai 99.8 2E-21 6.7E-26 149.2 7.9 153 6-164 41-240 (467)
148 1s0u_A EIF-2-gamma, translatio 99.8 4.5E-20 1.5E-24 139.6 15.1 150 4-163 4-185 (408)
149 3lxx_A GTPase IMAP family memb 99.8 5.6E-20 1.9E-24 129.8 14.5 122 5-132 26-160 (239)
150 3t5d_A Septin-7; GTP-binding p 99.8 5.9E-21 2E-25 137.4 9.6 151 4-164 4-192 (274)
151 1mky_A Probable GTP-binding pr 99.8 1.2E-20 4E-25 144.0 11.6 142 9-164 2-154 (439)
152 3geh_A MNME, tRNA modification 99.8 1.5E-21 5.1E-26 149.3 6.0 141 7-164 223-372 (462)
153 1f60_A Elongation factor EEF1A 99.8 1.5E-20 5.2E-25 143.9 11.3 152 4-164 3-200 (458)
154 1kk1_A EIF2gamma; initiation o 99.8 5.1E-20 1.7E-24 139.4 12.9 149 5-163 7-187 (410)
155 2qtf_A Protein HFLX, GTP-bindi 99.8 9.2E-20 3.2E-24 135.8 14.0 147 10-163 181-341 (364)
156 3mca_A HBS1, elongation factor 99.8 2.3E-21 8E-26 152.3 5.3 151 5-164 174-371 (592)
157 2hjg_A GTP-binding protein ENG 99.8 8.6E-21 2.9E-25 144.6 7.0 140 9-163 4-152 (436)
158 1ega_A Protein (GTP-binding pr 99.8 1.5E-19 5.3E-24 131.6 13.2 146 6-163 6-162 (301)
159 1mky_A Probable GTP-binding pr 99.8 4.7E-20 1.6E-24 140.7 10.8 149 6-164 178-343 (439)
160 1d2e_A Elongation factor TU (E 99.8 5.5E-20 1.9E-24 138.7 10.3 147 7-162 2-171 (397)
161 4dcu_A GTP-binding protein ENG 99.8 7E-21 2.4E-25 145.9 5.0 146 4-163 19-172 (456)
162 2c78_A Elongation factor TU-A; 99.8 3.4E-20 1.2E-24 140.1 8.5 147 5-162 8-180 (405)
163 3tr5_A RF-3, peptide chain rel 99.8 2.7E-20 9.1E-25 144.5 8.1 117 6-132 11-149 (528)
164 2qag_A Septin-2, protein NEDD5 99.8 1.8E-20 6.3E-25 139.6 6.8 146 6-162 35-220 (361)
165 3lxw_A GTPase IMAP family memb 99.8 3.2E-20 1.1E-24 131.7 7.7 123 5-132 18-154 (247)
166 1h65_A Chloroplast outer envel 99.8 3.6E-19 1.2E-23 127.8 13.3 122 6-132 37-169 (270)
167 1g7s_A Translation initiation 99.8 8.3E-20 2.8E-24 143.3 9.2 115 6-131 3-136 (594)
168 2aka_B Dynamin-1; fusion prote 99.8 2E-19 6.9E-24 130.6 10.5 151 6-164 24-241 (299)
169 3ohm_A Guanine nucleotide-bind 99.8 5.6E-19 1.9E-23 129.4 11.0 111 48-163 160-305 (327)
170 1cip_A Protein (guanine nucleo 99.8 3.2E-19 1.1E-23 132.2 9.4 112 48-164 186-332 (353)
171 2elf_A Protein translation elo 99.8 1.4E-19 4.7E-24 135.1 6.5 132 10-163 23-167 (370)
172 2h5e_A Peptide chain release f 99.8 1.5E-18 5E-23 134.8 11.9 118 6-133 11-150 (529)
173 2xtz_A Guanine nucleotide-bind 99.8 3.9E-19 1.3E-23 131.7 8.0 74 55-131 181-264 (354)
174 3avx_A Elongation factor TS, e 99.8 6.9E-19 2.3E-23 144.8 8.4 151 4-162 292-464 (1289)
175 4fid_A G protein alpha subunit 99.8 1.5E-18 5E-23 127.6 9.1 73 56-131 160-242 (340)
176 1dar_A EF-G, elongation factor 99.8 7.2E-18 2.5E-22 134.7 13.4 121 2-132 6-144 (691)
177 1n0u_A EF-2, elongation factor 99.7 3.3E-18 1.1E-22 139.1 8.8 119 4-130 15-163 (842)
178 1pui_A ENGB, probable GTP-bind 99.7 5.8E-18 2E-22 116.8 8.4 145 6-163 24-186 (210)
179 2xex_A Elongation factor G; GT 99.7 3.3E-17 1.1E-21 131.0 13.6 117 6-132 8-142 (693)
180 3t34_A Dynamin-related protein 99.7 5.4E-18 1.9E-22 126.3 8.2 149 7-162 33-247 (360)
181 2j69_A Bacterial dynamin-like 99.7 3E-17 1E-21 131.2 12.8 120 6-132 67-245 (695)
182 1jwy_B Dynamin A GTPase domain 99.7 5.1E-18 1.7E-22 124.1 7.5 69 57-132 131-213 (315)
183 2dy1_A Elongation factor G; tr 99.7 1.9E-17 6.6E-22 131.8 10.8 115 6-130 7-139 (665)
184 1wxq_A GTP-binding protein; st 99.7 2E-17 6.8E-22 124.5 9.3 85 9-93 1-114 (397)
185 2rdo_7 EF-G, elongation factor 99.7 9.8E-17 3.3E-21 128.4 13.6 121 5-133 7-150 (704)
186 2qpt_A EH domain-containing pr 99.7 2.3E-17 8E-22 128.7 5.9 120 6-132 63-233 (550)
187 3vqt_A RF-3, peptide chain rel 99.7 5.6E-16 1.9E-20 120.9 12.7 119 6-134 29-169 (548)
188 2x2e_A Dynamin-1; nitration, h 99.7 6.7E-17 2.3E-21 120.1 5.9 151 6-164 29-246 (353)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.5E-17 5.1E-22 121.1 1.7 125 23-164 32-161 (301)
190 2qnr_A Septin-2, protein NEDD5 99.7 9.3E-17 3.2E-21 116.9 5.9 148 6-164 16-202 (301)
191 2qag_C Septin-7; cell cycle, c 99.7 4.4E-16 1.5E-20 117.6 9.5 149 6-164 29-215 (418)
192 1udx_A The GTP-binding protein 99.6 9.7E-16 3.3E-20 115.7 9.0 148 9-163 158-312 (416)
193 1jal_A YCHF protein; nucleotid 99.6 3.1E-15 1.1E-19 110.9 11.2 84 9-92 3-108 (363)
194 4fn5_A EF-G 1, elongation fact 99.6 4.8E-15 1.6E-19 118.9 12.8 120 6-133 11-153 (709)
195 1azs_C GS-alpha; complex (lyas 99.6 3.8E-15 1.3E-19 111.8 9.6 79 48-131 210-298 (402)
196 1zcb_A G alpha I/13; GTP-bindi 99.6 4E-15 1.4E-19 110.6 7.8 78 48-130 194-281 (362)
197 4a9a_A Ribosome-interacting GT 99.6 7.8E-15 2.7E-19 109.3 9.2 117 8-130 72-195 (376)
198 2dby_A GTP-binding protein; GD 99.5 2E-14 7E-19 107.0 7.6 82 9-92 2-111 (368)
199 3j25_A Tetracycline resistance 99.5 1E-15 3.6E-20 121.4 0.8 119 7-133 1-135 (638)
200 3p32_A Probable GTPase RV1496/ 99.5 2.2E-15 7.4E-20 112.1 1.9 91 57-164 172-272 (355)
201 3zvr_A Dynamin-1; hydrolase, D 99.5 1.5E-13 5.1E-18 110.1 10.7 151 6-164 49-266 (772)
202 2wsm_A Hydrogenase expression/ 99.4 1.1E-14 3.9E-19 101.1 0.9 143 7-164 29-202 (221)
203 2www_A Methylmalonic aciduria 99.4 6.9E-13 2.4E-17 98.3 7.7 92 57-163 167-266 (349)
204 2ohf_A Protein OLA1, GTP-bindi 99.4 3.9E-13 1.3E-17 100.6 5.4 88 7-94 21-130 (396)
205 2hf9_A Probable hydrogenase ni 99.4 8.1E-16 2.8E-20 107.3 -9.7 29 7-35 37-65 (226)
206 1yrb_A ATP(GTP)binding protein 99.3 3.9E-12 1.3E-16 90.4 7.3 69 57-132 109-186 (262)
207 2p67_A LAO/AO transport system 99.3 4.4E-13 1.5E-17 99.1 1.6 90 57-163 149-248 (341)
208 2yv5_A YJEQ protein; hydrolase 99.2 5.2E-11 1.8E-15 86.6 6.4 88 67-164 66-157 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.4E-10 1.2E-14 84.8 7.4 86 7-92 19-127 (392)
210 2qm8_A GTPase/ATPase; G protei 99.0 5.3E-10 1.8E-14 82.5 7.7 91 57-163 148-248 (337)
211 3l82_B F-box only protein 4; T 99.0 7.2E-10 2.4E-14 75.8 7.0 97 66-163 111-210 (227)
212 3ec1_A YQEH GTPase; atnos1, at 99.0 4.6E-11 1.6E-15 89.2 1.2 111 9-132 163-289 (369)
213 3sop_A Neuronal-specific septi 99.0 7.6E-10 2.6E-14 79.2 7.4 25 8-32 2-26 (270)
214 2qag_B Septin-6, protein NEDD5 99.0 5.7E-09 1.9E-13 78.9 10.7 116 8-132 42-191 (427)
215 3h2y_A GTPase family protein; 98.9 6.9E-11 2.4E-15 88.2 -0.2 113 9-132 161-288 (368)
216 2j37_W Signal recognition part 98.8 2.7E-09 9.3E-14 82.3 2.7 116 6-132 99-255 (504)
217 3l2o_B F-box only protein 4; s 98.8 4.1E-09 1.4E-13 75.4 3.3 99 64-163 194-295 (312)
218 1puj_A YLQF, conserved hypothe 98.7 2.2E-08 7.6E-13 72.1 5.1 59 6-68 118-176 (282)
219 3h2y_A GTPase family protein; 98.6 1.6E-08 5.4E-13 75.4 3.1 89 66-164 55-148 (368)
220 3cnl_A YLQF, putative uncharac 98.6 1.5E-08 5.1E-13 72.2 2.6 58 9-70 100-157 (262)
221 3ec1_A YQEH GTPase; atnos1, at 98.5 4.4E-08 1.5E-12 73.1 1.7 89 66-164 57-150 (369)
222 1tq4_A IIGP1, interferon-induc 98.4 1.2E-06 4.2E-11 66.1 9.0 110 8-130 69-188 (413)
223 1f5n_A Interferon-induced guan 98.4 2.1E-07 7.1E-12 73.2 4.0 65 5-69 35-103 (592)
224 1puj_A YLQF, conserved hypothe 98.4 3.6E-07 1.2E-11 65.7 4.4 91 61-164 3-94 (282)
225 3szr_A Interferon-induced GTP- 98.3 2.1E-06 7.1E-11 68.0 7.4 24 9-32 46-69 (608)
226 2v3c_C SRP54, signal recogniti 98.2 1.6E-06 5.5E-11 65.9 6.1 65 57-132 181-253 (432)
227 3dm5_A SRP54, signal recogniti 98.1 2.3E-06 7.8E-11 65.0 4.9 66 57-132 183-254 (443)
228 1bif_A 6-phosphofructo-2-kinas 98.1 1.4E-07 4.7E-12 72.6 -2.9 102 6-109 37-148 (469)
229 3kl4_A SRP54, signal recogniti 97.8 7.4E-06 2.5E-10 62.2 2.8 66 57-132 180-253 (433)
230 3q5d_A Atlastin-1; G protein, 97.8 2.2E-05 7.6E-10 59.8 5.1 26 5-30 64-89 (447)
231 1j8m_F SRP54, signal recogniti 97.8 3.8E-05 1.3E-09 55.6 6.0 64 57-131 181-253 (297)
232 1ye8_A Protein THEP1, hypothet 97.7 2.1E-05 7.1E-10 52.7 3.1 23 9-31 1-23 (178)
233 1knq_A Gluconate kinase; ALFA/ 97.7 2.5E-05 8.6E-10 51.7 3.4 30 1-30 1-30 (175)
234 1t9h_A YLOQ, probable GTPase E 97.6 0.00014 4.9E-09 52.8 6.9 81 76-164 82-165 (307)
235 1kgd_A CASK, peripheral plasma 97.6 3E-05 1E-09 51.8 2.9 23 9-31 6-28 (180)
236 1zp6_A Hypothetical protein AT 97.6 4.6E-05 1.6E-09 51.1 3.2 25 7-31 8-32 (191)
237 1lvg_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 52.0 2.9 22 9-30 5-26 (198)
238 3cnl_A YLQF, putative uncharac 97.6 2.1E-05 7.2E-10 55.9 1.5 84 64-163 4-88 (262)
239 2wwf_A Thymidilate kinase, put 97.5 7.3E-05 2.5E-09 50.9 3.5 30 1-30 3-32 (212)
240 4gp7_A Metallophosphoesterase; 97.5 5.5E-05 1.9E-09 50.1 2.7 21 9-29 10-30 (171)
241 3tr0_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 50.9 3.0 23 9-31 8-30 (205)
242 2xxa_A Signal recognition part 97.5 0.00073 2.5E-08 51.4 9.0 65 57-132 184-255 (433)
243 3a00_A Guanylate kinase, GMP k 97.5 6.6E-05 2.2E-09 50.4 2.8 21 11-31 4-24 (186)
244 1znw_A Guanylate kinase, GMP k 97.4 6.9E-05 2.4E-09 51.1 2.8 22 10-31 22-43 (207)
245 1cke_A CK, MSSA, protein (cyti 97.4 8.1E-05 2.8E-09 51.3 3.2 22 9-30 6-27 (227)
246 3c8u_A Fructokinase; YP_612366 97.4 8.8E-05 3E-09 50.6 3.2 25 6-30 20-44 (208)
247 1z6g_A Guanylate kinase; struc 97.4 7.7E-05 2.6E-09 51.4 2.8 23 9-31 24-46 (218)
248 1s96_A Guanylate kinase, GMP k 97.4 8.3E-05 2.9E-09 51.4 3.0 24 9-32 17-40 (219)
249 3ney_A 55 kDa erythrocyte memb 97.4 8.4E-05 2.9E-09 50.5 2.9 24 8-31 19-42 (197)
250 3tau_A Guanylate kinase, GMP k 97.4 0.00011 3.6E-09 50.3 3.0 25 8-32 8-32 (208)
251 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.7E-09 50.0 3.0 24 8-31 12-35 (204)
252 1ex7_A Guanylate kinase; subst 97.3 0.00012 4.1E-09 49.3 3.0 21 11-31 4-24 (186)
253 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.7E-09 48.1 3.3 22 9-30 3-24 (181)
254 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.4E-09 49.7 3.2 25 6-30 4-28 (211)
255 3co5_A Putative two-component 97.3 0.00035 1.2E-08 44.8 5.1 24 8-31 27-50 (143)
256 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.5E-09 48.8 3.1 25 7-31 9-33 (184)
257 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.3E-09 48.1 3.0 23 9-31 5-27 (173)
258 3tif_A Uncharacterized ABC tra 97.3 0.00012 4E-09 51.2 2.9 23 10-32 33-55 (235)
259 3lw7_A Adenylate kinase relate 97.3 0.00014 4.8E-09 47.7 3.1 20 9-28 2-21 (179)
260 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.8E-09 49.2 3.1 25 8-32 6-30 (207)
261 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.8E-09 47.7 3.0 23 9-31 2-24 (173)
262 2bdt_A BH3686; alpha-beta prot 97.3 0.00014 4.9E-09 48.7 2.8 21 10-30 4-24 (189)
263 1htw_A HI0065; nucleotide-bind 97.3 0.00015 5.1E-09 47.5 2.8 24 9-32 34-57 (158)
264 1uf9_A TT1252 protein; P-loop, 97.3 0.00018 6.1E-09 48.6 3.3 28 4-31 4-31 (203)
265 2bbw_A Adenylate kinase 4, AK4 97.3 0.00016 5.6E-09 50.6 3.2 22 8-29 27-48 (246)
266 1qhx_A CPT, protein (chloramph 97.3 0.0002 6.9E-09 47.3 3.5 23 9-31 4-26 (178)
267 3cm0_A Adenylate kinase; ATP-b 97.3 0.00022 7.5E-09 47.5 3.7 23 8-30 4-26 (186)
268 3fb4_A Adenylate kinase; psych 97.3 0.00016 5.5E-09 49.5 3.0 22 9-30 1-22 (216)
269 2pcj_A ABC transporter, lipopr 97.3 0.00015 5.1E-09 50.2 2.9 23 10-32 32-54 (224)
270 2rcn_A Probable GTPase ENGC; Y 97.3 0.00015 5.3E-09 53.7 3.1 24 10-33 217-240 (358)
271 4eun_A Thermoresistant glucoki 97.3 0.00017 5.9E-09 48.8 3.1 24 7-30 28-51 (200)
272 3dl0_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 49.4 3.0 22 9-30 1-22 (216)
273 3vaa_A Shikimate kinase, SK; s 97.2 0.00019 6.5E-09 48.6 3.1 23 8-30 25-47 (199)
274 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.4E-09 47.7 3.2 23 8-30 5-27 (193)
275 3n70_A Transport activator; si 97.2 0.00071 2.4E-08 43.4 5.5 26 7-32 23-48 (145)
276 3t61_A Gluconokinase; PSI-biol 97.2 0.00019 6.5E-09 48.6 2.9 22 9-30 19-40 (202)
277 2onk_A Molybdate/tungstate ABC 97.2 0.0002 6.8E-09 50.2 3.1 23 10-32 26-48 (240)
278 2cbz_A Multidrug resistance-as 97.2 0.00019 6.5E-09 50.2 2.9 22 10-31 33-54 (237)
279 2cdn_A Adenylate kinase; phosp 97.2 0.00023 7.9E-09 48.1 3.3 25 6-30 18-42 (201)
280 2eyu_A Twitching motility prot 97.2 0.00019 6.5E-09 50.9 2.9 22 9-30 26-47 (261)
281 2if2_A Dephospho-COA kinase; a 97.2 0.00021 7.1E-09 48.4 3.0 22 9-30 2-23 (204)
282 3gfo_A Cobalt import ATP-bindi 97.2 0.00019 6.7E-09 51.3 2.9 23 10-32 36-58 (275)
283 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.7E-09 48.1 3.1 21 10-30 2-22 (205)
284 1nks_A Adenylate kinase; therm 97.2 0.00024 8.4E-09 47.4 3.3 22 9-30 2-23 (194)
285 1kht_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 47.5 3.1 22 9-30 4-25 (192)
286 1b0u_A Histidine permease; ABC 97.2 0.0002 6.8E-09 50.8 2.9 23 10-32 34-56 (262)
287 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.6E-09 49.2 3.1 24 7-30 6-29 (227)
288 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.6E-09 49.7 3.4 25 6-30 27-51 (243)
289 3ec2_A DNA replication protein 97.2 0.00019 6.4E-09 47.7 2.6 24 8-31 38-61 (180)
290 1sgw_A Putative ABC transporte 97.2 0.00022 7.4E-09 49.1 2.9 23 10-32 37-59 (214)
291 2c95_A Adenylate kinase 1; tra 97.2 8.2E-05 2.8E-09 50.0 0.8 24 7-30 8-31 (196)
292 4g1u_C Hemin import ATP-bindin 97.2 0.00021 7.3E-09 50.8 3.0 23 10-32 39-61 (266)
293 2qt1_A Nicotinamide riboside k 97.2 0.00032 1.1E-08 47.7 3.7 26 6-31 19-44 (207)
294 2v9p_A Replication protein E1; 97.2 0.00023 7.8E-09 51.6 3.0 22 9-30 127-148 (305)
295 1g6h_A High-affinity branched- 97.2 0.00022 7.5E-09 50.5 2.9 23 10-32 35-57 (257)
296 1np6_A Molybdopterin-guanine d 97.2 0.00024 8.4E-09 47.3 3.0 23 9-31 7-29 (174)
297 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.6E-09 47.8 3.3 24 7-30 24-47 (200)
298 2pze_A Cystic fibrosis transme 97.2 0.00023 7.9E-09 49.5 2.9 23 10-32 36-58 (229)
299 1mv5_A LMRA, multidrug resista 97.2 0.00026 8.8E-09 49.7 3.2 22 10-31 30-51 (243)
300 2ff7_A Alpha-hemolysin translo 97.2 0.00025 8.7E-09 49.9 3.1 23 10-32 37-59 (247)
301 3sr0_A Adenylate kinase; phosp 97.2 0.00025 8.6E-09 48.5 3.0 22 9-30 1-22 (206)
302 1tev_A UMP-CMP kinase; ploop, 97.1 0.00029 1E-08 47.1 3.3 23 8-30 3-25 (196)
303 1aky_A Adenylate kinase; ATP:A 97.1 0.00026 8.8E-09 48.7 3.1 23 8-30 4-26 (220)
304 2i3b_A HCR-ntpase, human cance 97.1 0.00022 7.4E-09 48.2 2.6 21 10-30 3-23 (189)
305 1u0l_A Probable GTPase ENGC; p 97.1 0.00029 1E-08 50.9 3.5 24 10-33 171-194 (301)
306 3iij_A Coilin-interacting nucl 97.1 0.00024 8.1E-09 47.2 2.8 24 7-30 10-33 (180)
307 2v54_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 47.3 3.5 24 8-31 4-27 (204)
308 1nn5_A Similar to deoxythymidy 97.1 0.00027 9.1E-09 48.1 3.1 23 8-30 9-31 (215)
309 2olj_A Amino acid ABC transpor 97.1 0.00025 8.5E-09 50.4 2.9 23 10-32 52-74 (263)
310 1e4v_A Adenylate kinase; trans 97.1 0.00026 8.8E-09 48.5 2.9 22 9-30 1-22 (214)
311 2ehv_A Hypothetical protein PH 97.1 0.00026 9E-09 49.3 3.0 21 9-29 31-51 (251)
312 2rcn_A Probable GTPase ENGC; Y 97.1 0.0011 3.8E-08 49.1 6.4 78 78-163 128-206 (358)
313 2plr_A DTMP kinase, probable t 97.1 0.00032 1.1E-08 47.6 3.4 23 8-30 4-26 (213)
314 1jjv_A Dephospho-COA kinase; P 97.1 0.00034 1.2E-08 47.5 3.5 23 9-31 3-25 (206)
315 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00027 9.2E-09 49.8 3.0 22 10-31 31-52 (250)
316 1gvn_B Zeta; postsegregational 97.1 0.00035 1.2E-08 50.2 3.6 24 7-30 32-55 (287)
317 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 46.8 3.1 23 8-30 5-27 (185)
318 1ji0_A ABC transporter; ATP bi 97.1 0.00026 8.9E-09 49.6 2.9 23 10-32 34-56 (240)
319 1qf9_A UMP/CMP kinase, protein 97.1 0.00042 1.4E-08 46.2 3.8 22 9-30 7-28 (194)
320 3b85_A Phosphate starvation-in 97.1 0.00022 7.4E-09 48.9 2.4 22 10-31 24-45 (208)
321 2yvu_A Probable adenylyl-sulfa 97.1 0.0004 1.4E-08 46.4 3.7 25 6-30 11-35 (186)
322 2yv5_A YJEQ protein; hydrolase 97.1 0.00026 9E-09 51.2 3.0 23 9-32 166-188 (302)
323 1vpl_A ABC transporter, ATP-bi 97.1 0.00027 9.3E-09 50.0 2.9 23 10-32 43-65 (256)
324 2qi9_C Vitamin B12 import ATP- 97.1 0.00027 9.4E-09 49.8 2.9 23 10-32 28-50 (249)
325 2ghi_A Transport protein; mult 97.1 0.0003 1E-08 49.9 3.1 22 10-31 48-69 (260)
326 2zu0_C Probable ATP-dependent 97.1 0.00029 9.9E-09 50.1 3.1 22 10-31 48-69 (267)
327 2ixe_A Antigen peptide transpo 97.1 0.00027 9.3E-09 50.4 2.9 23 10-32 47-69 (271)
328 4a74_A DNA repair and recombin 97.1 0.00028 9.5E-09 48.5 2.8 23 9-31 26-48 (231)
329 2pt5_A Shikimate kinase, SK; a 97.1 0.00036 1.2E-08 45.6 3.2 21 10-30 2-22 (168)
330 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0016 5.5E-08 49.6 7.0 66 5-70 64-153 (457)
331 3be4_A Adenylate kinase; malar 97.1 0.00033 1.1E-08 48.1 3.0 24 7-30 4-27 (217)
332 2ihy_A ABC transporter, ATP-bi 97.1 0.00035 1.2E-08 50.1 3.2 23 10-32 49-71 (279)
333 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8.3E-09 48.8 2.3 23 8-30 5-27 (222)
334 1ak2_A Adenylate kinase isoenz 97.1 0.00035 1.2E-08 48.5 3.1 24 7-30 15-38 (233)
335 3lnc_A Guanylate kinase, GMP k 97.1 0.00019 6.6E-09 49.7 1.8 21 9-29 28-48 (231)
336 1t9h_A YLOQ, probable GTPase E 97.1 9.3E-05 3.2E-09 53.8 0.1 24 9-32 174-197 (307)
337 1jbk_A CLPB protein; beta barr 97.1 0.00039 1.3E-08 46.0 3.2 24 8-31 43-66 (195)
338 1ukz_A Uridylate kinase; trans 97.1 0.00048 1.6E-08 46.6 3.7 24 7-30 14-37 (203)
339 2yz2_A Putative ABC transporte 97.0 0.00032 1.1E-08 49.8 2.9 23 10-32 35-57 (266)
340 2nq2_C Hypothetical ABC transp 97.0 0.00033 1.1E-08 49.5 2.9 23 10-32 33-55 (253)
341 3pfi_A Holliday junction ATP-d 97.0 0.0017 5.7E-08 47.4 6.7 25 7-31 54-78 (338)
342 1via_A Shikimate kinase; struc 97.0 0.00033 1.1E-08 46.3 2.6 21 10-30 6-26 (175)
343 2f1r_A Molybdopterin-guanine d 97.0 0.00015 5.2E-09 48.1 1.0 23 9-31 3-25 (171)
344 3aez_A Pantothenate kinase; tr 97.0 0.00043 1.5E-08 50.4 3.4 25 6-30 88-112 (312)
345 1odf_A YGR205W, hypothetical 3 97.0 0.00053 1.8E-08 49.4 3.7 25 5-29 28-52 (290)
346 3jvv_A Twitching mobility prot 97.0 0.00036 1.2E-08 51.7 2.9 21 10-30 125-145 (356)
347 1lw7_A Transcriptional regulat 97.0 0.0003 1E-08 52.2 2.5 24 8-31 170-193 (365)
348 2vli_A Antibiotic resistance p 97.0 0.00029 9.8E-09 46.8 2.1 23 8-30 5-27 (183)
349 2p5t_B PEZT; postsegregational 97.0 0.00033 1.1E-08 49.3 2.6 25 6-30 30-54 (253)
350 2pjz_A Hypothetical protein ST 97.0 0.00044 1.5E-08 49.1 3.2 23 10-32 32-54 (263)
351 2xb4_A Adenylate kinase; ATP-b 97.0 0.00046 1.6E-08 47.6 3.1 21 10-30 2-22 (223)
352 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00039 1.3E-08 51.5 2.9 23 10-32 32-54 (359)
353 2jeo_A Uridine-cytidine kinase 97.0 0.00048 1.7E-08 48.2 3.2 23 8-30 25-47 (245)
354 2x8a_A Nuclear valosin-contain 97.0 0.00042 1.4E-08 49.5 2.9 21 11-31 47-67 (274)
355 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00051 1.8E-08 48.5 3.3 23 8-30 4-26 (260)
356 2kjq_A DNAA-related protein; s 97.0 0.00039 1.3E-08 45.0 2.4 23 9-31 37-59 (149)
357 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00053 1.8E-08 51.0 3.3 24 6-29 31-54 (362)
358 3tqc_A Pantothenate kinase; bi 96.9 0.00061 2.1E-08 49.8 3.6 25 6-30 90-114 (321)
359 3nh6_A ATP-binding cassette SU 96.9 0.00028 9.7E-09 51.2 1.8 23 9-31 81-103 (306)
360 1ixz_A ATP-dependent metallopr 96.9 0.00049 1.7E-08 48.3 2.9 22 10-31 51-72 (254)
361 3rlf_A Maltose/maltodextrin im 96.9 0.0005 1.7E-08 51.4 3.1 23 10-32 31-53 (381)
362 2bwj_A Adenylate kinase 5; pho 96.9 0.00051 1.7E-08 46.1 2.9 23 8-30 12-34 (199)
363 4e22_A Cytidylate kinase; P-lo 96.9 0.00057 2E-08 48.1 3.2 22 8-29 27-48 (252)
364 1z47_A CYSA, putative ABC-tran 96.9 0.0005 1.7E-08 50.9 3.0 23 10-32 43-65 (355)
365 3tui_C Methionine import ATP-b 96.9 0.00051 1.7E-08 51.0 3.1 23 10-32 56-78 (366)
366 2pbr_A DTMP kinase, thymidylat 96.9 0.00057 1.9E-08 45.6 3.1 21 10-30 2-22 (195)
367 2bbs_A Cystic fibrosis transme 96.9 0.00052 1.8E-08 49.4 3.0 22 10-31 66-87 (290)
368 1rz3_A Hypothetical protein rb 96.9 0.00058 2E-08 46.3 3.1 24 7-30 21-44 (201)
369 2ze6_A Isopentenyl transferase 96.9 0.00051 1.7E-08 48.4 2.9 21 10-30 3-23 (253)
370 2gza_A Type IV secretion syste 96.9 0.00049 1.7E-08 51.1 2.9 23 9-31 176-198 (361)
371 1xjc_A MOBB protein homolog; s 96.9 0.00066 2.2E-08 45.0 3.2 23 8-30 4-26 (169)
372 2yyz_A Sugar ABC transporter, 96.9 0.00053 1.8E-08 50.9 3.0 23 10-32 31-53 (359)
373 3umf_A Adenylate kinase; rossm 96.9 0.0008 2.7E-08 46.4 3.7 22 9-30 30-51 (217)
374 2it1_A 362AA long hypothetical 96.9 0.00054 1.9E-08 50.9 3.1 23 10-32 31-53 (362)
375 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00051 1.8E-08 50.4 2.9 24 9-32 172-195 (330)
376 2f6r_A COA synthase, bifunctio 96.9 0.00074 2.5E-08 48.3 3.6 25 6-30 73-97 (281)
377 1uj2_A Uridine-cytidine kinase 96.9 0.00067 2.3E-08 47.6 3.3 25 6-30 20-44 (252)
378 2pez_A Bifunctional 3'-phospho 96.9 0.00073 2.5E-08 44.8 3.3 24 7-30 4-27 (179)
379 1vht_A Dephospho-COA kinase; s 96.9 0.00075 2.6E-08 46.2 3.4 23 8-30 4-26 (218)
380 1zuh_A Shikimate kinase; alpha 96.9 0.00071 2.4E-08 44.3 3.2 22 9-30 8-29 (168)
381 2z0h_A DTMP kinase, thymidylat 96.9 0.0006 2E-08 45.7 2.8 22 10-31 2-23 (197)
382 2ewv_A Twitching motility prot 96.9 0.00059 2E-08 50.9 3.0 22 9-30 137-158 (372)
383 1v43_A Sugar-binding transport 96.9 0.0006 2.1E-08 50.8 3.1 23 10-32 39-61 (372)
384 1g29_1 MALK, maltose transport 96.9 0.00059 2E-08 50.9 3.0 23 10-32 31-53 (372)
385 1sq5_A Pantothenate kinase; P- 96.9 0.00075 2.6E-08 48.9 3.5 25 6-30 78-102 (308)
386 1e6c_A Shikimate kinase; phosp 96.9 0.00066 2.2E-08 44.5 2.9 22 9-30 3-24 (173)
387 2p65_A Hypothetical protein PF 96.8 0.00052 1.8E-08 45.3 2.3 24 8-31 43-66 (187)
388 3r20_A Cytidylate kinase; stru 96.8 0.00074 2.5E-08 47.1 3.1 24 7-30 8-31 (233)
389 1gtv_A TMK, thymidylate kinase 96.8 0.00022 7.5E-09 48.6 0.4 21 10-30 2-22 (214)
390 1rj9_A FTSY, signal recognitio 96.8 0.00079 2.7E-08 48.8 3.3 24 7-30 101-124 (304)
391 2iyv_A Shikimate kinase, SK; t 96.8 0.00071 2.4E-08 45.0 2.9 21 10-30 4-24 (184)
392 1p9r_A General secretion pathw 96.8 0.00065 2.2E-08 51.4 2.9 23 9-31 168-190 (418)
393 3kta_A Chromosome segregation 96.8 0.00075 2.6E-08 44.8 2.9 21 10-30 28-48 (182)
394 3bos_A Putative DNA replicatio 96.8 0.00082 2.8E-08 46.3 3.1 25 7-31 51-75 (242)
395 1iy2_A ATP-dependent metallopr 96.8 0.00073 2.5E-08 48.1 2.9 22 10-31 75-96 (278)
396 3gd7_A Fusion complex of cysti 96.8 0.00071 2.4E-08 50.7 2.9 22 10-31 49-70 (390)
397 1lv7_A FTSH; alpha/beta domain 96.8 0.00085 2.9E-08 47.1 3.2 24 8-31 45-68 (257)
398 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00079 2.7E-08 46.2 3.0 22 9-30 24-45 (235)
399 2oap_1 GSPE-2, type II secreti 96.8 0.00072 2.5E-08 52.5 3.0 24 9-32 261-284 (511)
400 1in4_A RUVB, holliday junction 96.7 0.00077 2.6E-08 49.4 2.9 23 9-31 52-74 (334)
401 3d31_A Sulfate/molybdate ABC t 96.7 0.0005 1.7E-08 50.8 1.7 23 10-32 28-50 (348)
402 3b9q_A Chloroplast SRP recepto 96.7 0.00088 3E-08 48.5 3.0 23 8-30 100-122 (302)
403 2w58_A DNAI, primosome compone 96.7 0.001 3.5E-08 44.8 3.1 23 9-31 55-77 (202)
404 2vp4_A Deoxynucleoside kinase; 96.7 0.001 3.4E-08 46.1 3.0 26 6-31 18-43 (230)
405 4eaq_A DTMP kinase, thymidylat 96.7 0.0013 4.5E-08 45.6 3.6 25 7-31 25-49 (229)
406 1m7g_A Adenylylsulfate kinase; 96.7 0.0012 4E-08 45.1 3.3 23 8-30 25-47 (211)
407 3e70_C DPA, signal recognition 96.7 0.0013 4.3E-08 48.2 3.4 25 6-30 127-151 (328)
408 3nwj_A ATSK2; P loop, shikimat 96.6 0.00097 3.3E-08 47.0 2.6 22 9-30 49-70 (250)
409 2cvh_A DNA repair and recombin 96.6 0.0012 4.1E-08 45.0 3.0 22 9-30 21-42 (220)
410 1cr0_A DNA primase/helicase; R 96.6 0.0011 3.6E-08 47.7 2.8 21 10-30 37-57 (296)
411 2grj_A Dephospho-COA kinase; T 96.6 0.0016 5.4E-08 44.0 3.5 24 8-31 12-35 (192)
412 1ltq_A Polynucleotide kinase; 96.6 0.0014 4.9E-08 47.0 3.4 22 9-30 3-24 (301)
413 4fcw_A Chaperone protein CLPB; 96.6 0.0016 5.6E-08 46.8 3.8 23 9-31 48-70 (311)
414 1oxx_K GLCV, glucose, ABC tran 96.6 0.0005 1.7E-08 50.9 1.0 23 10-32 33-55 (353)
415 1d2n_A N-ethylmaleimide-sensit 96.6 0.0017 5.6E-08 46.0 3.7 27 5-31 61-87 (272)
416 3syl_A Protein CBBX; photosynt 96.6 0.0014 4.9E-08 47.1 3.3 25 6-30 65-89 (309)
417 1tue_A Replication protein E1; 96.6 0.00098 3.4E-08 45.5 2.3 22 9-30 59-80 (212)
418 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0014 4.7E-08 45.9 3.1 24 8-31 39-62 (262)
419 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.6E-08 45.4 3.0 23 9-31 25-47 (243)
420 3h4m_A Proteasome-activating n 96.6 0.0013 4.3E-08 46.8 2.9 25 7-31 50-74 (285)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.2E-08 42.2 3.0 19 11-29 26-44 (149)
422 3t15_A Ribulose bisphosphate c 96.6 0.0015 5.2E-08 46.9 3.3 25 7-31 35-59 (293)
423 3b9p_A CG5977-PA, isoform A; A 96.5 0.0015 5E-08 46.8 3.1 24 8-31 54-77 (297)
424 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0012 4.2E-08 50.5 2.8 23 9-31 139-161 (460)
425 3u61_B DNA polymerase accessor 96.5 0.0089 3.1E-07 43.3 7.3 21 11-31 51-71 (324)
426 1njg_A DNA polymerase III subu 96.5 0.0014 4.9E-08 44.8 2.9 21 10-30 47-67 (250)
427 2chg_A Replication factor C sm 96.5 0.0014 4.9E-08 44.3 2.8 22 10-31 40-61 (226)
428 1nij_A Hypothetical protein YJ 96.5 0.0015 5E-08 47.6 3.0 24 8-31 4-27 (318)
429 2obl_A ESCN; ATPase, hydrolase 96.5 0.0016 5.4E-08 48.1 3.0 24 9-32 72-95 (347)
430 2og2_A Putative signal recogni 96.5 0.0015 5.2E-08 48.4 3.0 23 8-30 157-179 (359)
431 2yhs_A FTSY, cell division pro 96.5 0.0015 5.1E-08 50.4 2.9 23 8-30 293-315 (503)
432 3crm_A TRNA delta(2)-isopenten 96.5 0.0021 7.1E-08 46.9 3.5 22 9-30 6-27 (323)
433 2qmh_A HPR kinase/phosphorylas 96.5 0.002 6.8E-08 43.8 3.1 24 9-32 35-58 (205)
434 3v9p_A DTMP kinase, thymidylat 96.5 0.0015 5E-08 45.4 2.5 25 6-30 23-47 (227)
435 1q3t_A Cytidylate kinase; nucl 96.4 0.0019 6.6E-08 44.8 3.1 25 6-30 14-38 (236)
436 3cf0_A Transitional endoplasmi 96.4 0.0018 6.1E-08 46.7 2.9 24 8-31 49-72 (301)
437 1svm_A Large T antigen; AAA+ f 96.4 0.0017 5.8E-08 48.5 2.8 23 8-30 169-191 (377)
438 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.7E-08 44.5 3.1 25 6-30 6-30 (230)
439 3b60_A Lipid A export ATP-bind 96.4 0.0019 6.6E-08 50.9 3.1 23 9-31 370-392 (582)
440 2dpy_A FLII, flagellum-specifi 96.4 0.002 6.9E-08 49.0 3.0 24 9-32 158-181 (438)
441 3euj_A Chromosome partition pr 96.4 0.0019 6.6E-08 49.7 2.9 21 10-30 31-51 (483)
442 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0022 7.7E-08 50.1 3.3 24 9-32 48-71 (538)
443 1p5z_B DCK, deoxycytidine kina 96.4 0.0015 5.1E-08 46.1 2.1 26 6-31 22-47 (263)
444 1l8q_A Chromosomal replication 96.4 0.0019 6.6E-08 46.9 2.8 24 8-31 37-60 (324)
445 1nlf_A Regulatory protein REPA 96.3 0.0021 7E-08 45.8 2.9 22 9-30 31-52 (279)
446 3b5x_A Lipid A export ATP-bind 96.3 0.0022 7.5E-08 50.6 3.2 23 9-31 370-392 (582)
447 3tqf_A HPR(Ser) kinase; transf 96.3 0.0027 9.1E-08 42.2 3.1 24 9-32 17-40 (181)
448 1sxj_E Activator 1 40 kDa subu 96.3 0.0015 5.2E-08 47.9 2.1 21 10-30 38-58 (354)
449 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0023 7.8E-08 47.6 3.0 19 11-29 26-44 (365)
450 1ofh_A ATP-dependent HSL prote 96.3 0.0019 6.5E-08 46.3 2.5 24 8-31 50-73 (310)
451 3zvl_A Bifunctional polynucleo 96.3 0.0029 1E-07 47.8 3.6 24 8-31 258-281 (416)
452 1c9k_A COBU, adenosylcobinamid 96.3 0.0027 9.4E-08 42.4 3.1 21 11-31 2-22 (180)
453 3ake_A Cytidylate kinase; CMP 96.3 0.0027 9.2E-08 42.8 3.1 21 10-30 4-24 (208)
454 2dr3_A UPF0273 protein PH0284; 96.3 0.0025 8.6E-08 44.1 2.9 21 10-30 25-45 (247)
455 2qby_A CDC6 homolog 1, cell di 96.3 0.0023 7.9E-08 47.1 2.8 24 8-31 45-68 (386)
456 3eie_A Vacuolar protein sortin 96.3 0.0028 9.5E-08 46.1 3.2 24 8-31 51-74 (322)
457 4b4t_M 26S protease regulatory 96.2 0.0027 9.2E-08 48.3 3.1 25 7-31 214-238 (434)
458 2yl4_A ATP-binding cassette SU 96.2 0.002 6.9E-08 50.9 2.6 22 10-31 372-393 (595)
459 1fnn_A CDC6P, cell division co 96.2 0.0027 9.3E-08 46.9 3.1 22 10-31 46-67 (389)
460 3ozx_A RNAse L inhibitor; ATP 96.2 0.0024 8.4E-08 49.8 2.9 24 9-32 26-49 (538)
461 3qf4_B Uncharacterized ABC tra 96.2 0.0022 7.6E-08 50.7 2.7 23 9-31 382-404 (598)
462 1sxj_C Activator 1 40 kDa subu 96.2 0.0022 7.4E-08 47.0 2.5 23 9-31 47-69 (340)
463 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.003 1E-07 46.1 3.1 24 8-31 45-68 (322)
464 1a7j_A Phosphoribulokinase; tr 96.2 0.0018 6.3E-08 46.5 1.8 22 9-30 6-27 (290)
465 3j16_B RLI1P; ribosome recycli 96.2 0.0028 9.7E-08 50.2 3.1 23 10-32 105-127 (608)
466 3foz_A TRNA delta(2)-isopenten 96.2 0.0039 1.3E-07 45.2 3.5 24 8-31 10-33 (316)
467 2ocp_A DGK, deoxyguanosine kin 96.2 0.0035 1.2E-07 43.6 3.2 24 8-31 2-25 (241)
468 3d3q_A TRNA delta(2)-isopenten 96.2 0.0038 1.3E-07 45.9 3.4 22 9-30 8-29 (340)
469 4b4t_K 26S protease regulatory 96.1 0.0033 1.1E-07 47.7 3.2 24 8-31 206-229 (428)
470 2ga8_A Hypothetical 39.9 kDa p 96.1 0.004 1.4E-07 46.0 3.5 24 7-30 23-46 (359)
471 4a82_A Cystic fibrosis transme 96.1 0.0019 6.3E-08 50.9 1.8 23 9-31 368-390 (578)
472 1azs_C GS-alpha; complex (lyas 96.1 0.0039 1.3E-07 46.9 3.4 25 5-29 37-61 (402)
473 4b4t_L 26S protease subunit RP 96.1 0.0035 1.2E-07 47.7 3.1 25 7-31 214-238 (437)
474 3pxg_A Negative regulator of g 96.1 0.0033 1.1E-07 48.2 3.0 25 7-31 200-224 (468)
475 3uk6_A RUVB-like 2; hexameric 96.1 0.0034 1.2E-07 46.2 3.0 23 9-31 71-93 (368)
476 3ozx_A RNAse L inhibitor; ATP 96.1 0.0033 1.1E-07 49.1 2.9 23 10-32 296-318 (538)
477 3qf4_A ABC transporter, ATP-bi 96.1 0.0025 8.5E-08 50.3 2.2 23 9-31 370-392 (587)
478 2v1u_A Cell division control p 96.1 0.0027 9.4E-08 46.8 2.4 25 7-31 43-67 (387)
479 3cr8_A Sulfate adenylyltranfer 96.1 0.0026 9E-08 49.8 2.3 26 6-31 367-392 (552)
480 3a8t_A Adenylate isopentenyltr 96.1 0.0049 1.7E-07 45.2 3.6 23 9-31 41-63 (339)
481 3bk7_A ABC transporter ATP-bin 96.1 0.0037 1.3E-07 49.5 3.2 24 9-32 118-141 (607)
482 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0035 1.2E-07 46.8 2.9 25 7-31 34-58 (392)
483 2r62_A Cell division protease 96.0 0.0015 5E-08 46.1 0.8 23 9-31 45-67 (268)
484 1pzn_A RAD51, DNA repair and r 96.0 0.0036 1.2E-07 46.2 2.9 23 9-31 132-154 (349)
485 2qgz_A Helicase loader, putati 96.0 0.004 1.4E-07 45.1 3.1 23 8-30 152-174 (308)
486 3ld9_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 42.7 3.3 26 5-30 18-43 (223)
487 3hws_A ATP-dependent CLP prote 96.0 0.0037 1.3E-07 46.2 2.9 25 7-31 50-74 (363)
488 1sxj_D Activator 1 41 kDa subu 96.0 0.0037 1.3E-07 45.6 2.8 22 10-31 60-81 (353)
489 3qks_A DNA double-strand break 96.0 0.0044 1.5E-07 42.1 3.0 19 11-29 26-44 (203)
490 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0043 1.5E-07 48.5 3.3 23 10-32 314-336 (538)
491 2bjv_A PSP operon transcriptio 96.0 0.0042 1.4E-07 43.7 3.0 25 8-32 29-53 (265)
492 2h92_A Cytidylate kinase; ross 96.0 0.0036 1.2E-07 42.7 2.5 22 9-30 4-25 (219)
493 3exa_A TRNA delta(2)-isopenten 96.0 0.0045 1.5E-07 45.0 3.1 23 9-31 4-26 (322)
494 1g8f_A Sulfate adenylyltransfe 96.0 0.005 1.7E-07 47.7 3.5 29 3-31 390-418 (511)
495 3te6_A Regulatory protein SIR3 96.0 0.0024 8.1E-08 46.6 1.6 26 6-31 43-68 (318)
496 3d8b_A Fidgetin-like protein 1 96.0 0.0042 1.4E-07 45.9 3.0 25 7-31 116-140 (357)
497 1um8_A ATP-dependent CLP prote 96.0 0.0037 1.3E-07 46.4 2.6 24 8-31 72-95 (376)
498 2px0_A Flagellar biosynthesis 96.0 0.004 1.4E-07 44.9 2.8 22 8-29 105-126 (296)
499 2qp9_X Vacuolar protein sortin 96.0 0.0042 1.4E-07 45.9 2.9 24 8-31 84-107 (355)
500 1m8p_A Sulfate adenylyltransfe 96.0 0.0058 2E-07 48.1 3.8 27 4-30 392-418 (573)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.2e-37 Score=212.82 Aligned_cols=153 Identities=33% Similarity=0.589 Sum_probs=128.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+|+|++|+|||||+++|..+.|...+.++.+.++.......++..+.+.+|||+|++.|+.++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+|+.+..|+..+...... ++|++|||||+|+.+. +.+. +.++.+.....+.++++||++|.|++
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence 999999999999999999999877653 7899999999999765 4444 56667777777889999999999875
No 2
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=185.00 Aligned_cols=158 Identities=35% Similarity=0.585 Sum_probs=131.1
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+...+..+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 66677889999999999999999999999998887778888888888888899998999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.. .........+.....+.++++||++|
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPERK-VVETEDAYKFAGQMGIQLFETSAKEN 155 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchhc-ccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 9999999999999999999999999987654 78999999999987642 12224445555555678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.|++
T Consensus 156 ~gi~ 159 (181)
T 3tw8_B 156 VNVE 159 (181)
T ss_dssp BSHH
T ss_pred CCHH
Confidence 8764
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=7.1e-33 Score=188.12 Aligned_cols=158 Identities=36% Similarity=0.628 Sum_probs=104.2
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|++..+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 66667789999999999999999999999888777777777778877788888888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
+|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+ .+..+.+.....+.++++||++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~ 154 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYGIKFMETSAKA 154 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc--CcCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999998876432 7899999999999764 222 2344445555567899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 155 ~~~i~ 159 (183)
T 2fu5_C 155 NINVE 159 (183)
T ss_dssp -CCHH
T ss_pred CCCHH
Confidence 98753
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=185.47 Aligned_cols=157 Identities=34% Similarity=0.644 Sum_probs=135.9
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
++..+..+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34556789999999999999999999999998888888888888888888999989999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+... +.+. ...+.+.....+.++++||++|
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLGIPFLETSAKNA 163 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999999999999999998877653 7899999999999765 3332 4455566666678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+++
T Consensus 164 ~gv~ 167 (196)
T 3tkl_A 164 TNVE 167 (196)
T ss_dssp TTHH
T ss_pred CCHH
Confidence 8864
No 5
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.8e-32 Score=185.62 Aligned_cols=164 Identities=57% Similarity=0.976 Sum_probs=118.4
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR 79 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~ 79 (165)
|+.+....++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.++ +....+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 66677889999999999999999999999998887777777777777777766 55688999999999999999999999
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh-cceeceeeeccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS-IITLSHTHTHGH 158 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~ 158 (165)
.+|++++|||++++.+++.+..|+..+..........+.|+++|+||+|+.........+..+.+.. .....++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 9999999999999999999999999988776533334889999999999965422222333444444 556789999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.|++
T Consensus 161 ~~~gi~ 166 (182)
T 1ky3_A 161 NAINVD 166 (182)
T ss_dssp TTBSHH
T ss_pred CCCCHH
Confidence 998763
No 6
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9.1e-32 Score=186.06 Aligned_cols=159 Identities=33% Similarity=0.602 Sum_probs=133.9
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 66567788999999999999999999999999887778888888888888889988999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+....+.....+.++++||++|
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDKR-VVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999988776532 78999999999997652 12223444455555678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+++
T Consensus 156 ~gi~ 159 (206)
T 2bcg_Y 156 TNVE 159 (206)
T ss_dssp TTHH
T ss_pred CCHH
Confidence 8763
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.9e-32 Score=184.33 Aligned_cols=159 Identities=35% Similarity=0.619 Sum_probs=133.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+...+..+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 66677888999999999999999999999999887778888888888888888888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.... .......+.+.....+.++++||++|
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDADR-EVTFLEASRFAQENELMFLETSALTG 157 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccccccc-ccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 99999999999999999999999888776542 78999999999996531 11123344445555678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.++.
T Consensus 158 ~gi~ 161 (186)
T 2bme_A 158 ENVE 161 (186)
T ss_dssp TTHH
T ss_pred CCHH
Confidence 8753
No 8
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=9.3e-32 Score=182.60 Aligned_cols=158 Identities=25% Similarity=0.471 Sum_probs=131.0
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
++...+.+||+|+|++|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 45567789999999999999999999999988777777776665 66777888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccc-cc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGH-TN 160 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~ 160 (165)
|++++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||+ +|
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHLR-KVTRDQGKEMATKYNIPYIETSAKDPP 166 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTTC-CSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhcc-CcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence 99999999999999999999999987765433 78999999999997642 222244555555556789999999 88
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.|++
T Consensus 167 ~~v~ 170 (183)
T 3kkq_A 167 LNVD 170 (183)
T ss_dssp BSHH
T ss_pred CCHH
Confidence 7753
No 9
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-31 Score=180.43 Aligned_cols=159 Identities=45% Similarity=0.837 Sum_probs=130.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+....++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 56778999999999999999999999998887777888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh-cceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS-IITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~ 162 (165)
+++|||++++.++..+..|+..+..........+.|+++|+||+|+... ....+..+.+.. ...+.++++||++|.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 9999999999999999999999887765333338899999999999732 222233333333 5567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 161 i~ 162 (177)
T 1wms_A 161 VA 162 (177)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-32 Score=187.25 Aligned_cols=156 Identities=35% Similarity=0.574 Sum_probs=132.6
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
...+..+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999988777888888888888888998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeecccccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+ .+..+.+.....+.++++||++|.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999998876532 7899999999999754 222 234444555556789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 175 gv~ 177 (201)
T 2ew1_A 175 NVE 177 (201)
T ss_dssp THH
T ss_pred CHH
Confidence 763
No 11
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.8e-32 Score=186.56 Aligned_cols=162 Identities=67% Similarity=1.063 Sum_probs=131.1
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+.+....++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 67778889999999999999999999999999887778888888888888888888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh-cceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS-IITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~ 159 (165)
+|++++|||++++.++..+..|+..+..........+.|+++|+||+|+... ....+..+.+.. ...+.++++||++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 9999999999999999999999998887664322237899999999999743 222233333333 5567899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 159 g~gi~ 163 (207)
T 1vg8_A 159 AINVE 163 (207)
T ss_dssp TBSHH
T ss_pred CCCHH
Confidence 98764
No 12
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=183.74 Aligned_cols=158 Identities=34% Similarity=0.566 Sum_probs=130.7
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
++..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++........+..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 45567789999999999999999999999988777778888888778888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLSDIR-EVPLKDAKEYAESIGAIVVETSAKNAI 171 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGGC-CSCHHHHHHHHHTTTCEEEECBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECccccccc-ccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 9999999999999999999999998876532 78999999999996531 222234455555556789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+++
T Consensus 172 gi~ 174 (192)
T 2fg5_A 172 NIE 174 (192)
T ss_dssp SHH
T ss_pred CHH
Confidence 764
No 13
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-31 Score=182.79 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=132.1
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+....+.++|+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 44555678999999999999999999999999887778888888888888888989999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
+|++++|||++++.++..+..|+..+...... .+.|+++|+||+|+.+. ....+....+.....+.++++||++|
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKENR--EVDRNEGLKFARKHSMLFIEASAKTC 162 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC---SCCEEEEEEECTTSSSC--CSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc---CCCcEEEEEECCcCccc--ccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 99999999999999999999998888665432 27899999999999543 22223344444445677999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+++
T Consensus 163 ~gi~ 166 (195)
T 1x3s_A 163 DGVQ 166 (195)
T ss_dssp TTHH
T ss_pred CCHH
Confidence 8753
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.5e-31 Score=180.55 Aligned_cols=158 Identities=32% Similarity=0.587 Sum_probs=131.5
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
+...+..+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34566789999999999999999999999988777777777788788888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
|++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQR-DVTYEEAKQFAEENGLLFLEASAKTGE 163 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccccccc-ccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988876543 78999999999996542 111233444444456789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 164 gi~ 166 (179)
T 1z0f_A 164 NVE 166 (179)
T ss_dssp THH
T ss_pred CHH
Confidence 763
No 15
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.9e-31 Score=179.04 Aligned_cols=157 Identities=32% Similarity=0.594 Sum_probs=130.7
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
..+...+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 44567899999999999999999999999888777777777787888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLLDAR-KVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCcccccc-cCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 999999999999999999999998876532 78999999999997642 2222344445545567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 162 i~ 163 (181)
T 2efe_B 162 VK 163 (181)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 16
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=1.8e-31 Score=180.53 Aligned_cols=158 Identities=25% Similarity=0.433 Sum_probs=129.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+......++|+++|++|+|||||+++|.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 6667778899999999999999999999999887777777765554 666788888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
+|++++|||++++.++..+..|+..+....... +.|+++|+||+|+.+. +.+ .+..+.+.....+.++++||++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~ 155 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ--RQVPRSEASAFGASHHVAYFEASAKL 155 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--cccCHHHHHHHHHHcCCeEEEecCCC
Confidence 999999999999999999999999886654322 7899999999999764 222 2344455555567899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.+++
T Consensus 156 ~~gv~ 160 (181)
T 2fn4_A 156 RLNVD 160 (181)
T ss_dssp TBSHH
T ss_pred CCCHH
Confidence 98763
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=2.4e-31 Score=180.26 Aligned_cols=155 Identities=26% Similarity=0.394 Sum_probs=128.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34679999999999999999999999888777777776666 67778889889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHMER-VISYEEGKALAESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTC-CSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhcc-eecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence 99999999999999999999887765433 78999999999997642 222345555666667789999999987753
No 18
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=2.9e-31 Score=177.67 Aligned_cols=154 Identities=35% Similarity=0.576 Sum_probs=130.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.+||+++|++|+|||||+++|.++.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998887777888888877888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC--CchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+|++++.++..+..|+..+...... +.|+++|+||+|+.... .....+..+.+.....+.++++||++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999988876532 78999999999996542 1222244455555556789999999998753
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.98 E-value=1.1e-31 Score=185.34 Aligned_cols=155 Identities=30% Similarity=0.550 Sum_probs=122.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34567999999999999999999999998877777777777877888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhccee-ceeeecccccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITL-SHTHTHGHTNT 161 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i-~~~~~s~~~~~ 161 (165)
+|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+ .+..+.+.....+ .++++||++|.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 99999999999999999999998876532 7899999999999764 222 2334445555566 79999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|+.
T Consensus 179 gi~ 181 (201)
T 2hup_A 179 NVE 181 (201)
T ss_dssp SHH
T ss_pred CHH
Confidence 753
No 20
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=2.2e-31 Score=182.17 Aligned_cols=157 Identities=35% Similarity=0.603 Sum_probs=128.1
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
......+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 44567899999999999999999999999888777777777787788888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESRR-DVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCcc-ccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999999998876443 78999999999996531 1122344445555567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 171 i~ 172 (191)
T 2a5j_A 171 VE 172 (191)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 21
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=1.9e-31 Score=178.66 Aligned_cols=152 Identities=33% Similarity=0.646 Sum_probs=123.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998877777777777777788888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+|++++.+++.+..|+..+...... +.|+++|+||+|+... ....+..+.+.....+.++++||++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMETR--VVTADQGEALAKELGIPFIESSAKNDDNVN 153 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTC--CSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCcC--ccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999988876543 7899999999999433 222344444555556789999999998754
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=8.2e-31 Score=180.80 Aligned_cols=156 Identities=29% Similarity=0.549 Sum_probs=131.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34568999999999999999999999998877777777778877888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.++
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDER-VVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS----SCEEEEEEECTTCTTSC-CSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCccc-ccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 99999999999999999999988776532 78999999999997642 12224444555555678999999999886
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 159 ~ 159 (203)
T 1zbd_A 159 K 159 (203)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=5.2e-31 Score=179.98 Aligned_cols=155 Identities=31% Similarity=0.575 Sum_probs=131.0
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34567999999999999999999999998877777777777777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+ .+..+.+.....+.++++||++|.+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLEDE--RVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999999999999988776532 7899999999999754 222 2344555555567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 172 i~ 173 (189)
T 2gf9_A 172 VK 173 (189)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.98 E-value=3.7e-31 Score=177.16 Aligned_cols=155 Identities=37% Similarity=0.618 Sum_probs=130.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
+.+.+||+++|++|+|||||+++|..+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999988877777777778778888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+....+.....+.++++||++|.+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANKR-AVDFQEAQSYADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCcccc-ccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999988876432 78999999999996542 111233344444456789999999998753
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=183.45 Aligned_cols=157 Identities=36% Similarity=0.625 Sum_probs=123.9
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
|...+..+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 45567789999999999999999999999988777777777888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhc-ceeceeeecccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSI-ITLSHTHTHGHT 159 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~-~~i~~~~~s~~~ 159 (165)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+ .+..+.+... ....++++||++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 9999999999999999999998888776543 7899999999999654 222 2233344333 366899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 174 g~gi~ 178 (192)
T 2il1_A 174 NFNVD 178 (192)
T ss_dssp TBSHH
T ss_pred CCCHH
Confidence 98864
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.98 E-value=1.8e-31 Score=178.88 Aligned_cols=155 Identities=35% Similarity=0.637 Sum_probs=123.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
.+..+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988777778888888778888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKER-HVSIQEAESYAESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECccccccc-ccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 9999999999999999999888765532 78999999999997642 111233444444555789999999998764
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=7.1e-31 Score=175.88 Aligned_cols=155 Identities=35% Similarity=0.624 Sum_probs=131.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+++|++|+|||||+++|.++.+...+.++.+.+.......+.+....+.+||+||.+.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998777778888888788888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|+|++++.+++.+..|+..+...... ..|+++|+||+|+.+.. ....+..+.+.......++++||++|.|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~iilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDVR-EVMERDAKDYADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECCcccccc-ccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999999988876432 78999999999997642 222344455555556789999999998764
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=9.9e-31 Score=176.89 Aligned_cols=156 Identities=34% Similarity=0.549 Sum_probs=122.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
..+..+||+++|++|+|||||+++|.+..+. ..+.++.+.++.......++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999998875 355667777777777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.... ....+..+.+.....+.++++||++|.+
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHER-VVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSCC-CSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccCccc-ccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999999999999988876542 78999999999997652 1222334445455567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 161 i~ 162 (180)
T 2g6b_A 161 VD 162 (180)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 29
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=8.6e-31 Score=179.58 Aligned_cols=155 Identities=26% Similarity=0.445 Sum_probs=127.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....+||+++|++|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 4456799999999999999999999999987777777765554 456788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceec-eeeeccccc
Q 031126 84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLS-HTHTHGHTN 160 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~-~~~~s~~~~ 160 (165)
+++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+...+.+ .+..+.+....... ++++||++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 9999999999999997 678888876543 789999999999986432332 34555555555666 999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.|+.
T Consensus 173 ~gi~ 176 (194)
T 3reg_A 173 IGLN 176 (194)
T ss_dssp BSHH
T ss_pred CCHH
Confidence 8864
No 30
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=182.64 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=121.9
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGA 81 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~ 81 (165)
.+....++|+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 4456789999999999999999999975544323334455666677778889999999999999988765 667778999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
|++++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+. +.+. +..+.+.....+.++++||++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARS--REVSLEEGRHLAGTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEeechhcccc--CCcCHHHHHHHHHHhCCEEEEEcCCCC
Confidence 99999999999999999999999887764322 7899999999999764 3322 3444455555678999999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+++
T Consensus 173 ~~v~ 176 (195)
T 3cbq_A 173 HNTR 176 (195)
T ss_dssp BSHH
T ss_pred CCHH
Confidence 8864
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=5.9e-31 Score=175.96 Aligned_cols=153 Identities=31% Similarity=0.641 Sum_probs=129.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888777888878888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDDS-CIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCccc-ccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 99999999999999999998887663 78999999999997542 111233444555556689999999998864
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=7e-31 Score=179.35 Aligned_cols=155 Identities=34% Similarity=0.620 Sum_probs=129.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhccccccE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADC 83 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~ 83 (165)
..+.+||+|+|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3456999999999999999999999998887777888788888888888888999999999999988 788888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccc---
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTN--- 160 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--- 160 (165)
+++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSAI-QVPTDLAQKFADTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccccccc-eeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence 999999999999999999999998875332 78999999999996541 12224445555556678999999998
Q ss_pred cCC
Q 031126 161 THS 163 (165)
Q Consensus 161 ~~~ 163 (165)
.++
T Consensus 173 ~~i 175 (189)
T 1z06_A 173 DHV 175 (189)
T ss_dssp SCH
T ss_pred cCH
Confidence 654
No 33
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-32 Score=186.43 Aligned_cols=158 Identities=29% Similarity=0.550 Sum_probs=133.4
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
+...+..+||+|+|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34567789999999999999999999999988777777777778788888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEER-VVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999999999998876533 78999999999996541 222244555556666789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 172 gi~ 174 (191)
T 3dz8_A 172 SVR 174 (191)
T ss_dssp SHH
T ss_pred CHH
Confidence 864
No 34
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.6e-30 Score=175.45 Aligned_cols=154 Identities=32% Similarity=0.582 Sum_probs=129.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+|+|++|+|||||+++|....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999999888777888888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.++.
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGGC-CSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCcccccC-cCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999999988776542 78999999999997542 111233344444455689999999998753
No 35
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.5e-31 Score=179.40 Aligned_cols=157 Identities=30% Similarity=0.550 Sum_probs=130.9
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++......+.+..+.+.+||+||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34566899999999999999999999999988777778778887788888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|||++++.++..+..|+..+...... +.|+++|+||+|+.... ....+..+.+.....+.++++||++|.+
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKSDLSQAR-EVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCT----TCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECCCccccc-ccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999999888765422 78999999999997542 1222344445445567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 175 i~ 176 (193)
T 2oil_A 175 VE 176 (193)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=4.5e-31 Score=183.93 Aligned_cols=153 Identities=19% Similarity=0.366 Sum_probs=124.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....+||+|+|++|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999998877777776655 4566677888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC-----------CchhchhHHhhhhccee-
Q 031126 84 CVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----------SRVVCIFCDVFSSIITL- 150 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~i- 150 (165)
+|+|||++++.++.. +..|+..+..... +.|+++|+||+|+.++. .....+..+.+.....+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 999999999999998 6889999888753 78999999999997531 12223455555566666
Q ss_pred ceeeeccccccC
Q 031126 151 SHTHTHGHTNTH 162 (165)
Q Consensus 151 ~~~~~s~~~~~~ 162 (165)
.++++||++|.|
T Consensus 177 ~~~e~SA~~g~g 188 (214)
T 3q3j_B 177 IYLEGSAFTSEK 188 (214)
T ss_dssp EEEECCTTTCHH
T ss_pred EEEEeccCCCcc
Confidence 899999999986
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=182.12 Aligned_cols=155 Identities=35% Similarity=0.610 Sum_probs=120.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 34678999999999999999999999998877777777777777888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+... +.+. .....+.....+.++++||++|.|
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999999999999988776542 7899999999999654 2222 333444455567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 175 i~ 176 (200)
T 2o52_A 175 VE 176 (200)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=8e-31 Score=175.69 Aligned_cols=153 Identities=18% Similarity=0.294 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhccccccEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL 86 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 86 (165)
.+||+++|++|+|||||+++|.+..+......+.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776655556666777778888899999999999999998876 66677889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.+++.+..|+..+....... ++|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARSR-EVSLEEGRHLAGTLSCKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCC---CCCEEEEeeCcchhhcc-cCCHHHHHHHHHHcCCcEEEecCccCCCHH
Confidence 999999999999999999988775533 78999999999997541 222344555666667789999999998864
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.4e-30 Score=177.94 Aligned_cols=157 Identities=34% Similarity=0.532 Sum_probs=128.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSL 73 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~ 73 (165)
..+..+||+|+|++|+|||||+++|..+.+...+.++.+.++. ......++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 5567899999999999999999999999887777777777776 556666655 789999999999999999
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceecee
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHT 153 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~ 153 (165)
+..+++.+|++++|+|++++.++..+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPDIVLCGNKSDLEDQR-AVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS---SCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccccccc-ccCHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999888765422 78999999999997541 1122344445555567899
Q ss_pred eeccccccCCC
Q 031126 154 HTHGHTNTHSN 164 (165)
Q Consensus 154 ~~s~~~~~~~~ 164 (165)
++||++|.+++
T Consensus 163 ~~Sa~~~~~v~ 173 (195)
T 3bc1_A 163 ETSAANGTNIS 173 (195)
T ss_dssp ECCTTTCTTHH
T ss_pred EEECCCCCCHH
Confidence 99999998753
No 40
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.4e-31 Score=182.39 Aligned_cols=156 Identities=30% Similarity=0.526 Sum_probs=119.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45579999999999999999999999988777777777777778888889889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC-----CCchhchhHHhhhhcceeceeeecccc
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----NSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. ......+..+.+.....+.++++||++
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 9999999999999999999888776432 7899999999999631 112223444555555567899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|+.
T Consensus 181 g~gv~ 185 (199)
T 2p5s_A 181 GSNIV 185 (199)
T ss_dssp CTTHH
T ss_pred CCCHH
Confidence 98763
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=3.3e-30 Score=175.49 Aligned_cols=153 Identities=27% Similarity=0.471 Sum_probs=125.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
++.+||+++|++|+|||||+++|.++.+...+.++. .+........++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999988876666665 4455566778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+... ....+..+.+.....++++++||++|.+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCDLPSR--TVDTKQAQDLARSYGIPFIETSAKTRQGVD 154 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTSSSC--SSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccCccc--ccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999988765433 7899999999999754 333445555555666789999999998764
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=177.88 Aligned_cols=154 Identities=32% Similarity=0.632 Sum_probs=128.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....++|+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999988777778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|||++++.+++.+..|+..+...... +.|+++|+||+|+... ....+..+.+.....+.++++||++|.+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMETR--VVTADQGEALAKELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCSSC--CSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--ccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999988876543 7899999999999432 222334444544455689999999998864
No 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=177.95 Aligned_cols=155 Identities=22% Similarity=0.355 Sum_probs=120.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+....+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 445679999999999999999999999988777777776555 455677888899999999999988875 568899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeecc-cccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHG-HTNT 161 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~ 161 (165)
+++|||++++.+++.+..|+..+....... ..+.|+++|+||+|+... +.+ .+..+.+.....+.++++|| ++|.
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKET-QRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 999999999999999999999888764210 017899999999999654 222 24445555555678999999 8887
Q ss_pred CC
Q 031126 162 HS 163 (165)
Q Consensus 162 ~~ 163 (165)
++
T Consensus 172 gv 173 (187)
T 3c5c_A 172 HV 173 (187)
T ss_dssp HH
T ss_pred cH
Confidence 65
No 44
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=2.2e-30 Score=176.50 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=120.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
...+.+||+|+|++|+|||||+++|..+.+...+.++. . .+...+.+++..+.+.+||++|++.++ +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 34567999999999999999999999999877666653 3 335777889999999999999998876 7788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcc-eeceeeecccccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSII-TLSHTHTHGHTNT 161 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~-~i~~~~~s~~~~~ 161 (165)
+++|||++++.+++.+..|+..+...... .+.|+++|+||+|+.....+.+. +..+.+.... .+.++++||++|.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNA---SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCG---GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 99999999999999999999998765321 17899999999999643323333 4444454444 3789999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
++.
T Consensus 166 gv~ 168 (184)
T 3ihw_A 166 NVE 168 (184)
T ss_dssp THH
T ss_pred CHH
Confidence 764
No 45
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=180.99 Aligned_cols=157 Identities=19% Similarity=0.398 Sum_probs=121.5
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (165)
|+......+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 555667789999999999999999999999988777677765554 4556677888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC----------Cchhc-hhHHhhhhcc
Q 031126 81 ADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVC-IFCDVFSSII 148 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~-~~~~~~~~~~ 148 (165)
+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.. .+.+. +..+.+....
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 9999999999999999998 789888877643 78999999999997431 12222 3344444433
Q ss_pred e-eceeeeccc-cccCC
Q 031126 149 T-LSHTHTHGH-TNTHS 163 (165)
Q Consensus 149 ~-i~~~~~s~~-~~~~~ 163 (165)
. ..++++||+ +|.|+
T Consensus 175 ~~~~~~e~SAk~~~~gv 191 (205)
T 1gwn_A 175 GAATYIECSALQSENSV 191 (205)
T ss_dssp TCSEEEECCTTTCHHHH
T ss_pred CCCEEEEeeeccCCcCH
Confidence 3 579999998 56554
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.5e-30 Score=172.75 Aligned_cols=151 Identities=27% Similarity=0.501 Sum_probs=123.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||+++|.++.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988777777665444 45566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcc-eeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSII-TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+....... +.|+++|+||+|+.+. +.+ .+..+.+.... ...++++||++|.|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTE---DVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcC---CCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999999998888765432 7899999999999764 222 23333444333 6789999999998764
No 47
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-30 Score=181.13 Aligned_cols=154 Identities=34% Similarity=0.615 Sum_probs=123.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999998877778887788788888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
|+|||++++.+++.+..|+..+...... +.|+++|+||+|+... +.+ .+....+.....+.++++||++|.++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999998776532 7899999999999754 222 23344455555678999999999875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 164 ~ 164 (223)
T 3cpj_B 164 D 164 (223)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.4e-31 Score=180.69 Aligned_cols=154 Identities=29% Similarity=0.443 Sum_probs=121.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999998877777776555 555566677789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|||++++.+++.+..|+..+....... ++|+++|+||+|+.... .......+.+.....+.++++||++|.++.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKT---RVPVVLVGNKADLSPER-EVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccCcccc-ccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 9999999999999999999887654332 78999999999997542 222244455556666789999999987753
No 49
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.4e-30 Score=175.97 Aligned_cols=154 Identities=26% Similarity=0.456 Sum_probs=124.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35779999999999999999999999988777666665444 45667778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------chh-chhHHhhhhccee-c
Q 031126 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVV-CIFCDVFSSIITL-S 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~~i-~ 151 (165)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+... +.+ .+....+...... .
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 9999999999999987 78888887643 789999999999976420 112 2333444443444 7
Q ss_pred eeeeccccccCCC
Q 031126 152 HTHTHGHTNTHSN 164 (165)
Q Consensus 152 ~~~~s~~~~~~~~ 164 (165)
++++||++|.+++
T Consensus 169 ~~~~Sa~~g~gi~ 181 (194)
T 2atx_A 169 YVECSALTQKGLK 181 (194)
T ss_dssp EEECCTTTCTTHH
T ss_pred EEEeeCCCCCCHH
Confidence 9999999998764
No 50
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=6.3e-30 Score=172.83 Aligned_cols=152 Identities=17% Similarity=0.269 Sum_probs=117.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+++|++|+|||||+++|.++.+.. +.++.+. .+...+.+++..+.+.+||++|++. ..+++.+|++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 3467999999999999999999999998876 5566653 3466677888889999999999876 4577889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhc-ceeceeeeccccccC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSI-ITLSHTHTHGHTNTH 162 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~i~~~~~s~~~~~~ 162 (165)
++|||++++.+++.+..|+..+....... ..+.|+++|+||+|+.....+.+. +..+.+... ..+.++++||++|.|
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 99999999999999999887776654421 127899999999999543223332 333444333 357899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 156 i~ 157 (178)
T 2iwr_A 156 VD 157 (178)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=6.4e-31 Score=177.54 Aligned_cols=157 Identities=31% Similarity=0.458 Sum_probs=125.5
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhccccccE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999887666666776777777777776 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeeeccccccC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
+++|||++++.+++.+..|+..+........ ...|+++|+||+|+.+. +.+ .+..+.+.....+.++++||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENGFSSHFVSAKTGDS 159 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccc--cccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999999999999988876532100 03348999999999754 222 2344445455567899999999987
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 160 i~ 161 (178)
T 2hxs_A 160 VF 161 (178)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=172.90 Aligned_cols=152 Identities=23% Similarity=0.347 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc--cccchhhccccccEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC 84 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 84 (165)
+.+||+++|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4689999999999999999999988775443 3455666677778888889999999999887 556667788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+. +.+. +..+.+.....+.++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~---~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQAD---HVPIILVGNKADLARC--REVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccC---CCCEEEEEEChhhccc--cccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 99999999999999999988887653222 7899999999999765 3222 3334444445568999999999876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 157 ~ 157 (175)
T 2nzj_A 157 A 157 (175)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.4e-32 Score=187.41 Aligned_cols=157 Identities=34% Similarity=0.644 Sum_probs=122.9
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
++..+..+||+|+|.+|+|||||+++|....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 34456789999999999999999999999888777777777888888888899889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeeccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTN 160 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~ 160 (165)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +.+. +..+.+.....+.++++||++|
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-C----CSEEEEC-CCSSCC----CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccC----CCCEEEEEECccCCcc--ccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 9999999999999999999999988665432 7899999999999765 2222 3344455555678999999998
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.+++
T Consensus 181 ~gv~ 184 (199)
T 3l0i_B 181 TNVE 184 (199)
T ss_dssp HHHH
T ss_pred CCHH
Confidence 8753
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=3.4e-30 Score=171.88 Aligned_cols=151 Identities=28% Similarity=0.485 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||++++..+.+...+.++.+ +.......+++....+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988766666654 33466677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....++++++||++|.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYE---KVPVILVGNKVDLESER-EVSSSEGRALAEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECCcccccc-cCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence 99999999999999999888765432 78999999999996542 22223344455555668999999998765
No 55
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.5e-30 Score=181.87 Aligned_cols=154 Identities=27% Similarity=0.548 Sum_probs=130.3
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
......+||+++|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34566799999999999999999998877776666777777888888888899999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|||++++.++..+..|+..+..... +.|+++|+||+|+.+.. . ......+.....+.++++||++|.|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999999999999999988754 78999999999997642 2 2223333444556899999999998
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 162 i~ 163 (221)
T 3gj0_A 162 FE 163 (221)
T ss_dssp TT
T ss_pred HH
Confidence 75
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=9.7e-30 Score=174.95 Aligned_cols=152 Identities=31% Similarity=0.577 Sum_probs=123.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeE----------------------------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------------------- 56 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (165)
.+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998887777887777777777766655
Q ss_pred ---------EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 57 ---------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 57 ---------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
..+.+||+||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~ 157 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI 157 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence 889999999999999999999999999999999999999999999998887653 47999999999
Q ss_pred CCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 128 DVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+... ....+..+.+.....+.++++||++|.+++
T Consensus 158 D~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 192 (208)
T 3clv_A 158 DKNKF--QVDILEVQKYAQDNNLLFIQTSAKTGTNIK 192 (208)
T ss_dssp TCC-C--CSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred Ccccc--cCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 93221 222233444444456789999999998753
No 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=5.1e-30 Score=171.27 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||+++|.+...... .++.+.+. .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665432 23333333 45667888999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTD---DVPIILVGNKSDLVRSR-EVSVDEGRACAVVFDCKFIETSAALHHNVQ 152 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSSC-CSCHHHHHHHHHHTTCEEEECBGGGTBSHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEecccccccc-ccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Confidence 99999999999999999887654322 78999999999997652 222344455555566789999999998763
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=6.3e-30 Score=170.72 Aligned_cols=153 Identities=27% Similarity=0.494 Sum_probs=121.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.+||+++|++|+|||||++++.++.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999888766666664443 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|||++++.++..+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDKR-QVSVEEAKNRADQWNVNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccccccC-ccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 999999999999999999988876533 78999999999997542 122233444444455679999999998753
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=6.5e-30 Score=173.61 Aligned_cols=156 Identities=26% Similarity=0.480 Sum_probs=125.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
...+.+||+|+|++|+|||||+++|....+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888776666664443 4556778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|.++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccccccC-ccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 999999999999999999999988876533 78999999999997642 11223334444445668999999999876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 169 ~ 169 (187)
T 2a9k_A 169 D 169 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=6.5e-30 Score=176.02 Aligned_cols=155 Identities=26% Similarity=0.404 Sum_probs=116.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....++|+++|++|+|||||+++|.++.+...+.++.+. .....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 3556899999999999999999999998877666666643 335566778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC----------Cc-hhchhHHhhhhccee-
Q 031126 84 CVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SR-VVCIFCDVFSSIITL- 150 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~-~~~~~~~~~~~~~~i- 150 (165)
+++|||++++.++..+. .|+..+..... +.|+++|+||+|+.... .+ ...+....+......
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 99999999999999986 78888877654 78999999999997531 11 122334444444444
Q ss_pred ceeeeccccccCCC
Q 031126 151 SHTHTHGHTNTHSN 164 (165)
Q Consensus 151 ~~~~~s~~~~~~~~ 164 (165)
.++++||++|.|++
T Consensus 170 ~~~~~Sa~~g~gi~ 183 (201)
T 2q3h_A 170 SYIECSALTQKNLK 183 (201)
T ss_dssp EEEECCTTTCTTHH
T ss_pred EEEEEecCCCCCHH
Confidence 79999999998763
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=175.20 Aligned_cols=155 Identities=26% Similarity=0.482 Sum_probs=126.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.++|+|+|++|+|||||+++|..+.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34578999999999999999999999988776666665444 45667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.. ....+....+.....+.++++||++|.+++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCccccc-cccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 99999999999999999999988775433 78999999999997642 111233344444455679999999998764
No 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=5.8e-30 Score=174.16 Aligned_cols=153 Identities=19% Similarity=0.399 Sum_probs=120.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988776667765554 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC----------Cchhc-hhHHhhhhcce-ec
Q 031126 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVC-IFCDVFSSIIT-LS 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~-~~~~~~~~~~~-i~ 151 (165)
++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.. .+.+. +..+.+..... ..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999998 688888876643 78999999999997431 11222 33444444333 57
Q ss_pred eeeeccc-cccCC
Q 031126 152 HTHTHGH-TNTHS 163 (165)
Q Consensus 152 ~~~~s~~-~~~~~ 163 (165)
++++||+ ++.++
T Consensus 158 ~~e~Sa~~~~~gi 170 (184)
T 1m7b_A 158 YIECSALQSENSV 170 (184)
T ss_dssp EEECBTTTBHHHH
T ss_pred EEEeeecCCCcCH
Confidence 9999998 56554
No 63
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=4.3e-30 Score=179.03 Aligned_cols=156 Identities=29% Similarity=0.464 Sum_probs=125.4
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
.....+||+|+|.+|+|||||+++|.++.+...+.++.+........... +..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45567999999999999999999999888876666666666655555444 34488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.. ....+....+.....+.++++||++|.|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNRQ-KISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999999999999999999999887653 68999999999997641 2223445556666777899999999998
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 162 v~ 163 (218)
T 4djt_A 162 FG 163 (218)
T ss_dssp TT
T ss_pred HH
Confidence 75
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=1.8e-30 Score=180.82 Aligned_cols=156 Identities=36% Similarity=0.583 Sum_probs=125.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSL 73 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~ 73 (165)
..+..+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++. .+.+.+||+||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3467899999999999999999999998887666677777776666666665 789999999999999999
Q ss_pred hhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceece
Q 031126 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSH 152 (165)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~ 152 (165)
+..+++.+|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+. +.+ .+..+.+.....+.+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ--REVNERQARELADKYGIPY 175 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCCE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc--cccCHHHHHHHHHHCCCcE
Confidence 99999999999999999999999999888876654332 127899999999999654 222 244455555556789
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.+++
T Consensus 176 ~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 176 FETSAATGQNVE 187 (217)
T ss_dssp EEEBTTTTBTHH
T ss_pred EEEECCCCCCHH
Confidence 999999998753
No 65
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.4e-30 Score=177.72 Aligned_cols=155 Identities=18% Similarity=0.300 Sum_probs=117.6
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCC--CCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRG 80 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~ 80 (165)
.....+||+|+|++|+|||||+++|.+... ... .++.+.+.....+.+++..+.+.+||++|++. +......+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999996433 222 23455666677778899889999999999876 45566677888
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~ 159 (165)
++++++|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +.+. +..+.+.....+.++++||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~---~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRC--REVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG---TTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999998877653221 17899999999999753 3332 333444445556799999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 187 g~~v~ 191 (211)
T 2g3y_A 187 QHNVK 191 (211)
T ss_dssp TBSHH
T ss_pred CCCHH
Confidence 98864
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=4.2e-29 Score=170.48 Aligned_cols=155 Identities=26% Similarity=0.435 Sum_probs=114.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
+..+.++|+++|.+|+|||||+++|..+.+...+.++.+. .....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3446799999999999999999999998877665555543 334566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|||++++.++..+..|+..+....... +.|+++|+||+|+... ....+..+.+.....+.++++||++|.+.
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPTR--TVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSCC--CSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCcc--cCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999999888765432 7899999999999763 33334444455555668999999999875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 171 ~ 171 (190)
T 3con_A 171 E 171 (190)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=4.4e-29 Score=166.18 Aligned_cols=151 Identities=25% Similarity=0.435 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEE
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 87 (165)
.+||+++|++|+|||||++++....+...+.++.+. ........++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 489999999999999999999998877666665543 3355667788888999999999999999998899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+|++++.++..+..|+..+....... +.|+++|+||+|+... ....+..+.+.....++++++|+++|.+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAAR--TVESRQAQDLARSYGIPYIETSAKTRQGVE 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSCC--CSCHHHHHHHHHHHTCCEEEECTTTCTTHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhhc--ccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 99999999999999999888765432 7899999999999763 333344445555556789999999998753
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2.1e-30 Score=179.00 Aligned_cols=156 Identities=24% Similarity=0.410 Sum_probs=92.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCCCCCCceeeeEEEEEEEECCe--EEEEEEEeCCCccccccchhhccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
...++|+|+|++|+|||||+++|... .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 666666677766777777778876 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-CCCchh-chhHHhhhhcceeceeeecccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG-GNSRVV-CIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
|++++|||++++.+++.+..|+..+....... ..+.|+++|+||+|+.+ . +.+ .+..+.+.....+.++++||++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDR-ERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNTLDFFDVSANP 174 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCT-TSCCEEEEEEECC---------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhccc-ccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcCCEEEEeccCC
Confidence 99999999999999999999999998765410 11789999999999976 3 222 2444445555557899999999
Q ss_pred -ccCCC
Q 031126 160 -NTHSN 164 (165)
Q Consensus 160 -~~~~~ 164 (165)
|.+++
T Consensus 175 ~~~gi~ 180 (208)
T 2yc2_C 175 PGKDAD 180 (208)
T ss_dssp -----C
T ss_pred CCcCHH
Confidence 98865
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.5e-29 Score=173.38 Aligned_cols=154 Identities=23% Similarity=0.449 Sum_probs=122.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....+||+++|.+|+|||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 356799999999999999999999999887776676655553 3466788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------c-hhchhHHhhhhccee-c
Q 031126 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------R-VVCIFCDVFSSIITL-S 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~-~~~~~~~~~~~~~~i-~ 151 (165)
++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+... + ...+....+...... .
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 999999999999998 678887776543 789999999999976421 1 111233334333343 6
Q ss_pred eeeeccccccCCC
Q 031126 152 HTHTHGHTNTHSN 164 (165)
Q Consensus 152 ~~~~s~~~~~~~~ 164 (165)
++++||++|.+++
T Consensus 176 ~~~~SA~~g~gi~ 188 (201)
T 2gco_A 176 YLECSAKTKEGVR 188 (201)
T ss_dssp EEECCTTTCTTHH
T ss_pred EEEeeCCCCCCHH
Confidence 8999999998764
No 70
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=9e-30 Score=176.72 Aligned_cols=152 Identities=29% Similarity=0.517 Sum_probs=122.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
....++|+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34679999999999999999999999988776667765444 45566788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch---------hchhHHhhhhcce-ecee
Q 031126 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV---------VCIFCDVFSSIIT-LSHT 153 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~-i~~~ 153 (165)
++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +. ..+..+.+..... ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHHHHHcCCceEE
Confidence 9999999999999986 79888877643 7899999999999765 22 1233344444444 3799
Q ss_pred eeccccccCCC
Q 031126 154 HTHGHTNTHSN 164 (165)
Q Consensus 154 ~~s~~~~~~~~ 164 (165)
++||++|.|++
T Consensus 158 ~~Sa~~g~gi~ 168 (212)
T 2j0v_A 158 ECSSKTQQNVK 168 (212)
T ss_dssp ECCTTTCTTHH
T ss_pred EccCCCCCCHH
Confidence 99999998763
No 71
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-29 Score=173.35 Aligned_cols=153 Identities=24% Similarity=0.420 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|++|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999988777777765444 55567788889999999999888 677788889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc-CCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT-HSN 164 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-~~~ 164 (165)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ....+..+.+.....+.++++||++|. ++.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~ 179 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPK---NVTLILVGNKADLDHSR-QVSTEEGEKLATELACAFYECSACTGEGNIT 179 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTS---CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTSEEEECCTTTCTTCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCC---CCcEEEEEECccccccc-ccCHHHHHHHHHHhCCeEEEECCCcCCcCHH
Confidence 9999999999999999998888765432 78999999999997641 122234444544556789999999998 653
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=176.35 Aligned_cols=153 Identities=28% Similarity=0.457 Sum_probs=103.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|++|+|||||+++|.++.+...+.++.+. .......+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999998877666666543 33556678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc----------hhc-hhHHhhhhccee-ce
Q 031126 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VVC-IFCDVFSSIITL-SH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~-~~~~~~~~~~~i-~~ 152 (165)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+...... .+. +....+...... .+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999986 68888877653 7899999999999765210 111 233444444444 79
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.|++
T Consensus 186 ~~~SA~~g~gi~ 197 (214)
T 2j1l_A 186 LECSARLHDNVH 197 (214)
T ss_dssp EECBTTTTBSHH
T ss_pred EEecCCCCCCHH
Confidence 999999998864
No 73
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2.2e-29 Score=170.97 Aligned_cols=153 Identities=24% Similarity=0.443 Sum_probs=121.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999888766666664433 556677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------ch-hchhHHhhhhccee-ce
Q 031126 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RV-VCIFCDVFSSIITL-SH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~~i-~~ 152 (165)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+... +. ..+....+...... .+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999987 68888877644 789999999999976421 11 11233334433343 79
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.+++
T Consensus 157 ~~~Sa~~g~gi~ 168 (186)
T 1mh1_A 157 LECSALTQRGLK 168 (186)
T ss_dssp EECCTTTCTTHH
T ss_pred EEecCCCccCHH
Confidence 999999998764
No 74
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.3e-29 Score=171.41 Aligned_cols=156 Identities=19% Similarity=0.342 Sum_probs=115.5
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (165)
+......+|+|+|.+|+|||||+++|.++.+.. .+.++.+... ..+... .+.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 456678999999999999999999999998877 5666665333 333333 47899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCC----CCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh-----hcceece
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASP----SDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS-----SIITLSH 152 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~i~~ 152 (165)
|++|+|||++++.++..+..|+..+...... ....++|+++|+||+|+.... ...+..+.+. ....+.+
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEE
Confidence 9999999999999999998888887654210 001167999999999998762 2222222221 3356789
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.+++
T Consensus 166 ~~~Sa~~g~gv~ 177 (199)
T 4bas_A 166 FASNGLKGTGVH 177 (199)
T ss_dssp EECBTTTTBTHH
T ss_pred EEeeCCCccCHH
Confidence 999999998864
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=172.56 Aligned_cols=156 Identities=22% Similarity=0.366 Sum_probs=124.0
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
.....++|+++|++|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 345679999999999999999999999888766666665433 3455678888899999999999999999899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|||++++.+++.+..|+..+...... ..+.|+++|+||+|+.+. ....+....+.....+.++++||++|.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQR--EVDTREAQAVAQEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSSC--SSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCcc--ccCHHHHHHHHHHhCCeEEEEecCCCCCH
Confidence 99999999999999998888877765432 116799999999999763 22233444444455567999999999875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 159 ~ 159 (199)
T 2gf0_A 159 K 159 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.5e-29 Score=166.84 Aligned_cols=154 Identities=23% Similarity=0.387 Sum_probs=121.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.+||+++|++|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 458999999999999999999999887766666654443 3455677888899999999999999998899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCCC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
|+|++++.+++.+..|+..+...... ..+.|+++|+||+|+.+.. .......+.+.....+.++++||++|.+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPSR-EVQSSEAEALARTWKCAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEcccccccc-ccCHHHHHHHHHHhCCeEEEecCCCCcCHH
Confidence 99999999999999998888775431 1178999999999996542 122233444445556689999999998753
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8e-29 Score=171.53 Aligned_cols=153 Identities=23% Similarity=0.427 Sum_probs=115.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...+||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999999887766666655443 34677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC----------c-hhchhHHhhhhccee-ce
Q 031126 86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------R-VVCIFCDVFSSIITL-SH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~-~~~~~~~~~~~~~~i-~~ 152 (165)
+|||++++.++..+ ..|+..+..... +.|+++|+||+|+..... + ...+....+...... .+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999988 678888776543 789999999999975411 0 111223333333333 68
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.++.
T Consensus 177 ~~~SA~~g~gi~ 188 (207)
T 2fv8_A 177 LECSAKTKEGVR 188 (207)
T ss_dssp EECCTTTCTTHH
T ss_pred EEeeCCCCCCHH
Confidence 999999998753
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=4.7e-29 Score=172.46 Aligned_cols=154 Identities=24% Similarity=0.437 Sum_probs=120.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+ +.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999888766666663 44566667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-----------hhchhHHhhhhcce-ec
Q 031126 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-----------VVCIFCDVFSSIIT-LS 151 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----------~~~~~~~~~~~~~~-i~ 151 (165)
++|||++++.+++.+. .|+..+..... +.|+++|+||+|+...... ...+....+..... ..
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999986 78888877653 7899999999999765210 11122333333333 35
Q ss_pred eeeeccccccCCC
Q 031126 152 HTHTHGHTNTHSN 164 (165)
Q Consensus 152 ~~~~s~~~~~~~~ 164 (165)
++++||++|.|++
T Consensus 181 ~~~~SA~~g~gi~ 193 (204)
T 4gzl_A 181 YLECSALTQRGLK 193 (204)
T ss_dssp EEECCTTTCTTHH
T ss_pred EEEeeCCCCCCHH
Confidence 9999999998864
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.2e-28 Score=168.15 Aligned_cols=151 Identities=20% Similarity=0.340 Sum_probs=117.4
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 84 (165)
..+.+||+|+|++|+|||||+++|.++.+...+.++.+.++.. +...+ +.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3567999999999999999999999998876667776655542 33344 7899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeeccccc
Q 031126 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTN 160 (165)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~ 160 (165)
++|+|++++.++..+..|+..+...... .+.|+++|+||+|+..... ..+..+.+ .....+.++++||++|
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQL---QGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGG---TTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCccc---CCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 9999999999999998888877653211 1789999999999976521 11122221 1224567899999999
Q ss_pred cCCC
Q 031126 161 THSN 164 (165)
Q Consensus 161 ~~~~ 164 (165)
.|++
T Consensus 170 ~gv~ 173 (188)
T 1zd9_A 170 DNID 173 (188)
T ss_dssp TTHH
T ss_pred CCHH
Confidence 8764
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=1e-29 Score=174.14 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=113.3
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-----------CCceeeeEEEEEE-EECCeEEEEEEEeCCCcccc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERF 70 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~ 70 (165)
......+||+++|++|+|||||++++.+ .+...+ .++.+.++..... ..++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3456789999999999999999976654 443332 2344444433333 45677889999999999999
Q ss_pred ccchhhccccccEEEEEEeCC------ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh
Q 031126 71 QSLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF 144 (165)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 144 (165)
...+..+++.+|++++|||++ +..+++.+..|+..+... ..+.|+++|+||+|+.+. ...+..+.+
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-----~~~~piilv~NK~Dl~~~---~~~~~~~~~ 159 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-----LDDVPIVIQVNKRDLPDA---LPVEMVRAV 159 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-----TTSSCEEEEEECTTSTTC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-----cCCCCEEEEEEchhcccc---cCHHHHHHH
Confidence 999999999999999999999 556667777777766321 228899999999999764 222333444
Q ss_pred hhccee-ceeeeccccccCCC
Q 031126 145 SSIITL-SHTHTHGHTNTHSN 164 (165)
Q Consensus 145 ~~~~~i-~~~~~s~~~~~~~~ 164 (165)
...... .++++||++|.|++
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~ 180 (198)
T 3t1o_A 160 VDPEGKFPVLEAVATEGKGVF 180 (198)
T ss_dssp HCTTCCSCEEECBGGGTBTHH
T ss_pred HHhcCCceEEEEecCCCcCHH
Confidence 445556 89999999998864
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=1.6e-28 Score=168.41 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=115.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC--CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD 82 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 82 (165)
...+||+++|++|+|||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|.+. ++.....+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999998643 2322 23455666677778899889999999999876 4556667788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhHHhhhhcceeceeeecccccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
++++|||++++.+++.+..|+..+....... +.|+++|+||+|+... +.+. +..+.+.......++++||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~---~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTE---DIPIILVGNKSDLVRX--REVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCeEEEEEechhhhcc--ccccHHHHHHHHHHhCCceEEeccccCC
Confidence 9999999999999999999988877653322 7899999999999653 3322 33344444455679999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 158 ~v~ 160 (192)
T 2cjw_A 158 NVK 160 (192)
T ss_dssp SHH
T ss_pred CHH
Confidence 864
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=5e-30 Score=173.72 Aligned_cols=153 Identities=27% Similarity=0.523 Sum_probs=108.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...+||+++|++|+|||||++++..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4569999999999999999999999887666555554332 223344566678899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc---------hhchhHHhhhhccee-ceee
Q 031126 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR---------VVCIFCDVFSSIITL-SHTH 154 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~i-~~~~ 154 (165)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... ...+..+.+...... .+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999987 68888877643 7899999999999765211 012333444444443 7999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.|++
T Consensus 160 ~Sa~~~~gi~ 169 (182)
T 3bwd_D 160 CSSKSQENVK 169 (182)
T ss_dssp CCTTTCTTHH
T ss_pred EECCCCCCHH
Confidence 9999998764
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.9e-28 Score=166.70 Aligned_cols=149 Identities=17% Similarity=0.332 Sum_probs=115.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||++++.++. ...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887 55555555533 34445554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~ 161 (165)
+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+.. ...+..+.+. ....+.++++||++|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhc---CCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 999999999999998888877654221 178999999999997652 2222222221 2245679999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+++
T Consensus 166 gi~ 168 (186)
T 1ksh_A 166 DLL 168 (186)
T ss_dssp THH
T ss_pred CHH
Confidence 764
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=166.59 Aligned_cols=154 Identities=17% Similarity=0.280 Sum_probs=115.5
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC-CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
...+.+||+++|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999887 4444555554 3445555555 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh--hh--cceeceeeeccc
Q 031126 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF--SS--IITLSHTHTHGH 158 (165)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~--~~~i~~~~~s~~ 158 (165)
++++|+|++++.+++.+..|+..+....... ..+.|+++|+||+|+.+.. ...+..+.+ .. ...+.++++||+
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIK-HRRIPILFFANKMDLRDAV--TSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTT-TSCCCEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhc-cCCCeEEEEEeCcCcccCC--CHHHHHHHhChhhccCCceEEEEccCC
Confidence 9999999999999999989888887653220 0278999999999997642 222222222 12 135679999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.+++
T Consensus 170 ~~~gi~ 175 (190)
T 2h57_A 170 KGEGLQ 175 (190)
T ss_dssp TTBTHH
T ss_pred CCcCHH
Confidence 998764
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=3.4e-28 Score=166.39 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=114.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||++++.++.+.. +.++.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 456799999999999999999999887653 34444443 45556666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh-----------hcceeceee
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS-----------SIITLSHTH 154 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------~~~~i~~~~ 154 (165)
+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+.... ...+..+.+. ....+.+++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAEL---KDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGG---TTCCEEEEEECTTSTTCC--CHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhh---cCCCEEEEEECCCCcCCC--CHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999999999998888654221 178999999999997632 1222222222 234567999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.|++
T Consensus 171 ~Sa~~g~gi~ 180 (190)
T 1m2o_B 171 CSVVMRNGYL 180 (190)
T ss_dssp CBTTTTBSHH
T ss_pred eECCcCCCHH
Confidence 9999998864
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=2.1e-28 Score=168.52 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=107.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.++..+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999988764 334444433 34455666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh----------------cce
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS----------------IIT 149 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~ 149 (165)
+|+|++++.++..+..|+..+...... .+.|+++|+||+|+..... ..+..+.+.. ...
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETI---ANVPILILGNKIDRPEAIS--EERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGG---TTSCEEEEEECTTSTTCCC--HHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCccc---CCCcEEEEEECCCccccCC--HHHHHHHhCcccccccccccccccccCce
Confidence 999999999999999998888654221 1789999999999976321 1122222111 245
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
..++++||++|.|++
T Consensus 173 ~~~~~~SA~~g~gv~ 187 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYG 187 (198)
T ss_dssp EEEEECBTTTTBSHH
T ss_pred EEEEEEECCCCCCHH
Confidence 679999999998864
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.6e-28 Score=163.74 Aligned_cols=146 Identities=16% Similarity=0.285 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEE
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (165)
+||+++|++|+|||||++++..+.+.. +.++.+. ....+...+ +.+.+||+||++.++..+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887654 3445442 233344443 78999999999999999888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeeccccccCCC
Q 031126 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~~~~ 164 (165)
|++++.++..+..|+..+...... .+.|+++|+||+|+.+.. ...+..+.+ .......++++||++|.|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhh---cCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHH
Confidence 999999999998888877653221 278999999999997652 112222222 12234569999999998764
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.5e-28 Score=166.74 Aligned_cols=151 Identities=20% Similarity=0.276 Sum_probs=112.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
...+.+||+++|.+|+|||||+++|.++.+ ..+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445679999999999999999999999887 33344444333 3444555 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeecccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHT 159 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~ 159 (165)
+++|+|++++.+++.+..|+..+...... .+.|+++|+||+|+..... ..+..+.+ .....+.++++||++
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDL---RKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh---CCCeEEEEEECCCcccCCC--HHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999999998888887654211 1789999999999976421 11111211 122445799999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 167 g~gi~ 171 (181)
T 2h17_A 167 GEGLC 171 (181)
T ss_dssp TBTHH
T ss_pred CcCHH
Confidence 98864
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.6e-28 Score=165.75 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=112.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...++|+++|++|+|||||+++|.+..+. .+.++.+ .....+.+++ +.+.+||+||++.++..+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987542 2333443 2334445554 78999999999999998899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~ 161 (165)
+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+.. ...+..+.+ .......++++||++|.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKL---SCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGG---TTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhh---cCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 999999999999998888776543211 278999999999997652 222222222 12234579999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|++
T Consensus 164 gi~ 166 (181)
T 1fzq_A 164 GVQ 166 (181)
T ss_dssp THH
T ss_pred CHH
Confidence 864
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=8.9e-28 Score=160.98 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=114.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||+++|..+.+.. +.++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999888753 344444 3334455554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-hhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-VVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+|+|++++.++..+..|+..+...... .+.|+++|+||+|+.+.... .+. ...........+.++++||++|.++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEEL---RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhh---CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 999999999999988888777654221 17899999999999775211 111 1111122234557999999999876
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 157 ~ 157 (171)
T 1upt_A 157 D 157 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-28 Score=166.71 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=110.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988775 444444432 33444555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~ 161 (165)
+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+..... ..+..+.+. ....+.++++||++|.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDL---RKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGG---TTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhh---CCCeEEEEEECCCCcCCCC--HHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 999999999999999998888764211 1789999999999976422 111112211 2235679999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+++
T Consensus 164 gi~ 166 (187)
T 1zj6_A 164 GLC 166 (187)
T ss_dssp THH
T ss_pred CHH
Confidence 764
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=3.7e-28 Score=166.47 Aligned_cols=149 Identities=18% Similarity=0.320 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|++|+|||||+++|..+.+.. +.++.+ .....+...+ +.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887642 233333 3334444544 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~ 161 (165)
+|+|++++.++..+..|+..+...... .+.|+++|+||+|+.+.. ...+..+.+ .......++++||++|.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~---~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDEL---RDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHhccccc---CCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 999999999999998888887653221 178999999999997652 222222222 22234568999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+++
T Consensus 177 gi~ 179 (192)
T 2b6h_A 177 GLY 179 (192)
T ss_dssp THH
T ss_pred CHH
Confidence 764
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=4.2e-28 Score=165.04 Aligned_cols=147 Identities=24% Similarity=0.401 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC--CCCCCCCCceeeeEEEEEEEE---CCeEEEEEEEeCCCccccccchhhcccccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 82 (165)
.+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+||++|++.+......+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344445566666665555433 235678999999999999988888999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh----chhHHhhhhcceec----ee
Q 031126 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV----CIFCDVFSSIITLS----HT 153 (165)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~i~----~~ 153 (165)
++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+. +.. .+..+.+.....+. ++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 99999999987 578889999998876543 7899999999999764 332 23334444444444 89
Q ss_pred eecccccc
Q 031126 154 HTHGHTNT 161 (165)
Q Consensus 154 ~~s~~~~~ 161 (165)
++||++|.
T Consensus 155 ~~Sa~~~~ 162 (184)
T 2zej_A 155 FVNATEES 162 (184)
T ss_dssp ECCTTSCC
T ss_pred EEecccCc
Confidence 99999985
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=7.9e-28 Score=164.10 Aligned_cols=151 Identities=16% Similarity=0.247 Sum_probs=112.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
++.+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 33444322 33444554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-hhc-hhHHhhhhcceeceeeeccccccCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-VVC-IFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~-~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+|+|++++.++..+..|+..+...... .+.|+++|+||+|+...... .+. ...........+.++++||++|.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDEL---RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTT---TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhc---CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 999999999999988888777653221 27899999999999765211 111 1111122223457999999999875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
+
T Consensus 172 ~ 172 (189)
T 2x77_A 172 V 172 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=8.3e-28 Score=162.97 Aligned_cols=149 Identities=18% Similarity=0.304 Sum_probs=109.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+++|++|+|||||++++..+.+ ..+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 3334444432 33444555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh----hcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS----SIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~ 161 (165)
+|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ...+..+.+. ......++++||++|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999999999888887765432 1278999999999997642 1222222221 1234579999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
+++
T Consensus 166 gi~ 168 (183)
T 1moz_A 166 GIT 168 (183)
T ss_dssp THH
T ss_pred CHH
Confidence 764
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=2.7e-26 Score=157.90 Aligned_cols=153 Identities=35% Similarity=0.613 Sum_probs=123.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
+..++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45699999999999999999999999887777777777777788888998899999999999999988888889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+|+|+++..+++.+..|+..+...... +.|+++|+||+|+.+.. ......+..+.....+.++++||+++.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNNLSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECccccccc-CcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999988888877654322 67999999999997542 11123344454445567899999998775
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=6e-28 Score=165.81 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=106.2
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccch---hhcc
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLG---VAFY 78 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~ 78 (165)
....+.+||+++|++|+|||||++++.+. +..................+ ++..+.+.+||++|++.|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 44566899999999999999999988764 32222211111111222223 2556789999999999988776 7889
Q ss_pred ccccEEEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----chhc-hhHHhhhh----
Q 031126 79 RGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----RVVC-IFCDVFSS---- 146 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~-~~~~~~~~---- 146 (165)
+.+|++++|||++++ +++..+..|+..+..... +.|+++|+||+|+..... +.+. ...+.+..
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 999999999999997 666667777776654433 889999999999876321 1221 33444444
Q ss_pred cceeceeeeccccccCC
Q 031126 147 IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 147 ~~~i~~~~~s~~~~~~~ 163 (165)
...+.++++||++ .|+
T Consensus 169 ~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp TSCEEEEEECTTS-THH
T ss_pred cCCcceEEEEech-hhH
Confidence 5677899999998 765
No 98
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=9e-27 Score=161.80 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=89.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe-EEEEEEEeCCCcccccc-chhhccccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA 81 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~ 81 (165)
++.+.++|+++|++|+|||||+++|..+.+...+.+ .+.+... +.+++. .+.+.+||+||++.+.. .+..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 456779999999999999999999999887766543 3334333 455543 57899999999999987 777889999
Q ss_pred cEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 82 ~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
|++++|||+++.. ++.....|+..+...... ...+.|+++|+||+|+...
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh-cccCCCEEEEEECCCCCCc
Confidence 9999999999853 455555544443322110 0116899999999999765
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.1e-29 Score=173.98 Aligned_cols=154 Identities=24% Similarity=0.436 Sum_probs=118.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 457999999999999999999999888766555555333 3445556677788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----------chhchhHHhhhhccee-ce
Q 031126 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------RVVCIFCDVFSSIITL-SH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~i-~~ 152 (165)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+... ....+....+...... .+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 999999999999886 77777765433 789999999999976421 1111233333444444 78
Q ss_pred eeeccccccCCCC
Q 031126 153 THTHGHTNTHSNQ 165 (165)
Q Consensus 153 ~~~s~~~~~~~~~ 165 (165)
+++||++|.|+++
T Consensus 182 ~~vSA~~g~gi~~ 194 (204)
T 3th5_A 182 LECSALTQRGLKT 194 (204)
Confidence 9999999998763
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=3.2e-26 Score=156.68 Aligned_cols=156 Identities=33% Similarity=0.590 Sum_probs=127.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
..+..++|+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 34567999999999999999999999998887888888888888888899988899999999999998888888899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccCC
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 163 (165)
+++|+|.++..+++.+..|+..+...... +.|+++|+||+|+.+.. ......++.+.....+.++++||+++.+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccccccc-ccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999998888888877654322 67999999999997532 11123444555555567889999998875
Q ss_pred C
Q 031126 164 N 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 180 ~ 180 (191)
T 1oix_A 180 E 180 (191)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=1.5e-26 Score=170.23 Aligned_cols=153 Identities=24% Similarity=0.426 Sum_probs=122.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
...++|+++|.+|+|||||++++..+.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 34589999999999999999999998887776666643 34566678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----------chhchhHHhhhhccee-ce
Q 031126 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------RVVCIFCDVFSSIITL-SH 152 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~i-~~ 152 (165)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+... .......+.+...... .+
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999999886 68888876644 789999999999965410 1112333444444444 79
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+++||++|.+++
T Consensus 307 ~~~Sa~~~~gi~ 318 (332)
T 2wkq_A 307 LECSALTQRGLK 318 (332)
T ss_dssp EECCTTTCTTHH
T ss_pred EEecCCCCcCHH
Confidence 999999998764
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=3.2e-27 Score=159.33 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=106.9
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 83 (165)
...+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345679999999999999999999999888766555555555555566666 467899999999999999889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh---hhcc--eeceeeeccc
Q 031126 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF---SSII--TLSHTHTHGH 158 (165)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~i~~~~~s~~ 158 (165)
+++|+|++++....... ++..+.. . +.|+++|+||+|+.+..........+.. .... .+.++++||+
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l~~~~~---~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AINHAKA---A----NVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HHHHHGG---G----SCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEEEECCCCCcHHHHH-HHHHHHh---C----CCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999998843322221 1222221 1 7899999999999764222222211111 1111 2579999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.+++
T Consensus 154 ~~~gv~ 159 (178)
T 2lkc_A 154 TKEGLD 159 (178)
T ss_dssp SSHHHH
T ss_pred CCCCHH
Confidence 998753
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=1.1e-26 Score=155.37 Aligned_cols=143 Identities=12% Similarity=0.172 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFYR-- 79 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~-- 79 (165)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+||+||++.+.. ....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998766544444444444444555555 6799999999887752 2344554
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.++++++|+|+++.++ ...|+..+... +.|+++|+||+|+... +.+....+.+.+.....++++||++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKS--LGIEIDVDKLEKILGVKVVPLSAAK 148 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHH--TTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhccc--cChhhHHHHHHHHhCCCEEEEEcCC
Confidence 7999999999998543 34566665542 7899999999998643 2222223444444456899999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 149 ~~~v~ 153 (165)
T 2wji_A 149 KMGIE 153 (165)
T ss_dssp TBSHH
T ss_pred CCCHH
Confidence 98864
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=169.22 Aligned_cols=148 Identities=16% Similarity=0.291 Sum_probs=107.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.++|+|+|.+|+|||||+++|..+.+... .++.+.. ...+...+ +.+.+||+||++.+...+..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998876432 2333333 33344444 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeeccccccC
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~~ 162 (165)
|||++++.++..+..|+..+...... .++|+++|+||+|+.+.. ...+....+ .......++++||++|.+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEECCchHHHHHHHHHHHHHHhhhcc---CCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 99999999999988887777554322 278999999999998752 222222222 223456799999999988
Q ss_pred CC
Q 031126 163 SN 164 (165)
Q Consensus 163 ~~ 164 (165)
++
T Consensus 314 i~ 315 (329)
T 3o47_A 314 LY 315 (329)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=5.8e-26 Score=159.39 Aligned_cols=154 Identities=18% Similarity=0.108 Sum_probs=101.5
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------cc
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QS 72 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~ 72 (165)
|......++|+|+|.+|+|||||+++|.+..+.....+..+.+.........+ ..+.+||+||+... ..
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 44456679999999999999999999998876432223333334444444444 67999999998321 11
Q ss_pred chhhccccccEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhh
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSS 146 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~ 146 (165)
....++..+|++++|+|++++.++. ....|+..+..... +.|+++|+||+|+.+. +.+. ...+.+..
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS-----NKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILD 173 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHH
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc-----CCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHH
Confidence 1223467789999999999987764 23345555543321 7899999999999765 2222 23334444
Q ss_pred cce--eceeeeccccccCCC
Q 031126 147 IIT--LSHTHTHGHTNTHSN 164 (165)
Q Consensus 147 ~~~--i~~~~~s~~~~~~~~ 164 (165)
... +.++++||++|.|++
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~ 193 (228)
T 2qu8_A 174 NVKNPIKFSSFSTLTGVGVE 193 (228)
T ss_dssp HCCSCEEEEECCTTTCTTHH
T ss_pred hcCCCceEEEEecccCCCHH
Confidence 333 679999999998864
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-27 Score=170.10 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=107.7
Q ss_pred cccceeeEEEEEcCC---------CCChHHHHHHHhc---CCCCCCCCCce-eeeEEEEE--------------EEECCe
Q 031126 3 SRRRTLLKVIILGDS---------GVGKTSLMNQYVN---KKFSNQYKATI-GADFLTKE--------------VQFEDR 55 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 55 (165)
+.....+||+|+|.+ |+|||||+++|.. ..+...+.++. +.++.... ...++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345667999999999 9999999999998 44544444443 22211111 123566
Q ss_pred EEEEEEEe-----------------------CCCccccccchhhccc---------------------cccEEEEEEeCC
Q 031126 56 LFTLQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVN 91 (165)
Q Consensus 56 ~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 91 (165)
.+.+.+|| ++|++.+...+..+++ .+|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6677777777777776 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh-cceeceeeeccccccCCC
Q 031126 92 SM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS-IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 92 ~~--~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~~ 164 (165)
++ .+++.+..|+..+....... ++|+++|+||+|+... +.+. ..+.+.. ...+.++++||++|.|++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~---~~piilV~NK~Dl~~~--~~v~-~~~~~~~~~~~~~~~e~SAk~g~gv~ 243 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKT---KKPIVVVLTKCDEGVE--RYIR-DAHTFALSKKNLQVVETSARSNVNVD 243 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHT---TCCEEEEEECGGGBCH--HHHH-HHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccC---CCCEEEEEEccccccc--HHHH-HHHHHHHhcCCCeEEEEECCCCCCHH
Confidence 98 99999999999887652111 7899999999999654 3343 3333333 246689999999998864
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=1.6e-25 Score=163.70 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=108.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC---CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhcc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFY 78 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 78 (165)
..+||+++|.+|+|||||++++.++... ..+.+|.+.... ...+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4589999999999999999999887432 123344444433 344433 478999999999988 67888888
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-----hchhHHhhhhcce---e
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-----VCIFCDVFSSIIT---L 150 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~---i 150 (165)
+.+|++++|||++++.+++.+..|...+...... ..++|+++|+||+|+.....+. ..+..+.+..... +
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 9999999999999999999987776555443211 1178999999999998732232 2244455555543 7
Q ss_pred ceeeecccc
Q 031126 151 SHTHTHGHT 159 (165)
Q Consensus 151 ~~~~~s~~~ 159 (165)
.++++||++
T Consensus 157 ~~~~tSa~~ 165 (307)
T 3r7w_A 157 IGFPTSIWD 165 (307)
T ss_dssp EEEECCTTS
T ss_pred EEEEeeecC
Confidence 899999998
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=7e-25 Score=169.64 Aligned_cols=149 Identities=14% Similarity=0.256 Sum_probs=114.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
.+.++|+|+|.+|+|||||+++|..+.+.. ..++.+.+. ..+...+ +.+.+|||+|++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999988543 344544333 3344444 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcceeceeeecccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIITLSHTHTHGHTNT 161 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~ 161 (165)
+|||++++.++..+..|+..+....... ++|+++|+||+|+.+.. ...+..+.+ .......++++||++|.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMR---DAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGT---TCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcC---CCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 9999999999999998888886543222 78999999999997652 222222222 22244569999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
++.
T Consensus 470 gi~ 472 (497)
T 3lvq_E 470 GLY 472 (497)
T ss_dssp THH
T ss_pred CHH
Confidence 763
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=6.4e-26 Score=157.90 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=103.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCC---CCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc-
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG- 80 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 80 (165)
....++|+++|++|+|||||+++|....+... ..++.+.++ ....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999999876542 222222211 33578999999999998888888876
Q ss_pred ---ccEEEEEEeCC-ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-----hchhHHhhhhcceec
Q 031126 81 ---ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-----VCIFCDVFSSIITLS 151 (165)
Q Consensus 81 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~i~ 151 (165)
+|++++|+|++ ++.++.....|+..+..........++|+++|+||+|+....... ..+..+.+.......
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888898888888887764311001178999999999998763211 023344444555567
Q ss_pred eeeeccccccCC
Q 031126 152 HTHTHGHTNTHS 163 (165)
Q Consensus 152 ~~~~s~~~~~~~ 163 (165)
++++|+++|.+.
T Consensus 160 ~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 160 LNEVERKINEED 171 (218)
T ss_dssp HHC---------
T ss_pred cccccccccccc
Confidence 899999988764
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=1.2e-25 Score=153.03 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=105.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR 79 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 79 (165)
.+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998765444444555555566666666 789999999988775 23445554
Q ss_pred --cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 80 --GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 80 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
.++++++|+|.++ ++....|+..+... +.|+++|+||+|+... +.+....+.+.+...+.++++||
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~-------~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa 150 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM-------GANLLLALNKMDLAKS--LGIEIDVDKLEKILGVKVVPLSA 150 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT-------TCCEEEEEECHHHHHH--TTCCCCHHHHHHHHTSCEEECBG
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc-------CCCEEEEEEhhhcccc--ccchHHHHHHHHHhCCCeEEEEe
Confidence 5899999999886 44555666666542 7899999999999653 22223444555555578999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+++
T Consensus 151 ~~~~~v~ 157 (188)
T 2wjg_A 151 AKKMGIE 157 (188)
T ss_dssp GGTBSHH
T ss_pred cCCCCHH
Confidence 9998753
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=1.3e-25 Score=163.81 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=100.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC---CCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---chhhccccccE
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC 83 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 83 (165)
||+++|++|+|||||++++.++-++. ...+|.+.+... ++ ..+.+.+|||+|++.|+. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654322 134555555432 22 347899999999999974 35788999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-----chhc-hhHHhhhhc----ceec
Q 031126 84 CVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----RVVC-IFCDVFSSI----ITLS 151 (165)
Q Consensus 84 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~-~~~~~~~~~----~~i~ 151 (165)
+|+|||++++ .....+..|+..+....+ ++|+++|+||+|+..+.. +.+. +.++.+.+. ..+.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999997 223333333444433332 789999999999986532 2222 455566664 6789
Q ss_pred eeeeccccc
Q 031126 152 HTHTHGHTN 160 (165)
Q Consensus 152 ~~~~s~~~~ 160 (165)
++++||+++
T Consensus 151 f~eTSAkd~ 159 (331)
T 3r7w_B 151 FYLTSIFDH 159 (331)
T ss_dssp EECCCSSSS
T ss_pred EEEeccCCC
Confidence 999999973
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.5e-24 Score=143.89 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 80 (165)
.||+++|++|+|||||++++.+..+. ....++.+.+........++ ..+.+||+||...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 22233333445555666666 47889999998763 3445567789
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhccee-ceeeecccc
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITL-SHTHTHGHT 159 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~ 159 (165)
+|++++|+|++++.+... .++..+.... +.|+++|+||+|+.+. +. ..+.+.+ ... .++++||++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~------~~p~ilv~nK~Dl~~~--~~---~~~~~~~-~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK------GKPVILVATKVDDPKH--EL---YLGPLYG-LGFGDPIPTSSEH 145 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH------TCCEEEEEECCCSGGG--GG---GCGGGGG-GSSCSCEECBTTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc------CCCEEEEEECcccccc--hH---hHHHHHh-CCCCCeEEEeccc
Confidence 999999999998644322 2222222221 7899999999999765 21 1122222 233 689999999
Q ss_pred ccCCC
Q 031126 160 NTHSN 164 (165)
Q Consensus 160 ~~~~~ 164 (165)
|.|++
T Consensus 146 ~~gv~ 150 (161)
T 2dyk_A 146 ARGLE 150 (161)
T ss_dssp TBSHH
T ss_pred CCChH
Confidence 98864
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=4.6e-25 Score=148.62 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=101.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (165)
...+|+|+|++|+|||||+++|.+..+. ....++.+.+.....+.+++ ..+.+||+||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 22233444555666677777 45889999998653221 1135
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++++|+|++++.+++ ...|+..+...... ++|+++|+||+|+.+.... +.......++++||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~----~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA 147 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA----KLPITVVRNKADITGETLG--------MSEVNGHALIRLSA 147 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT----TCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc----CCCEEEEEECccCCcchhh--------hhhccCCceEEEeC
Confidence 78999999999999888765 34677766655432 7899999999999643111 11123457899999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.|++
T Consensus 148 ~~g~gv~ 154 (172)
T 2gj8_A 148 RTGEGVD 154 (172)
T ss_dssp TTCTTHH
T ss_pred CCCCCHH
Confidence 9998764
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.92 E-value=3.8e-25 Score=151.32 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=96.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (165)
...++|+++|.+|+|||||+++|.+..+.....++.+.+........++ .+.+||+|| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998875444444433333333333343 589999999 677777777
Q ss_pred hccccc---cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhcc
Q 031126 76 AFYRGA---DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSII 148 (165)
Q Consensus 76 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~ 148 (165)
.+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+... +... +..+.+....
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCT
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCh--HHHHHHHHHHHHHHcccC
Confidence 777766 9999999999877766532 2222222 17899999999999775 3332 2222244334
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
...++++||++|.|++
T Consensus 168 ~~~~~~~Sa~~~~gv~ 183 (195)
T 1svi_A 168 EDELILFSSETKKGKD 183 (195)
T ss_dssp TSEEEECCTTTCTTHH
T ss_pred CCceEEEEccCCCCHH
Confidence 5679999999998764
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.5e-25 Score=159.91 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----------chhhcc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY 78 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 78 (165)
.+|+++|.+|||||||+|+|.+........++.+.+.....+..++ ..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999998865444455556666677777777 4789999999877764 344455
Q ss_pred --ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 79 --RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 79 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
+.+|++++|+|+++.++...+..+ +... +.|+++|+||+|+... +........+.+...++++++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~~-------~~pvilv~NK~Dl~~~--~~~~~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFEL-------GKPVVVALNMMDIAEH--RGISIDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTTS-------CSCEEEEEECHHHHHH--TTCEECHHHHHHHHCSCEEECB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHHc-------CCCEEEEEEChhcCCc--CCcHHHHHHHHHHcCCCEEEEE
Confidence 789999999999986555443332 2221 7899999999999764 3333344556666778999999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
|++|.+.+
T Consensus 148 A~~g~gi~ 155 (256)
T 3iby_A 148 AHKNIGIP 155 (256)
T ss_dssp GGGTBSHH
T ss_pred CCCCCCHH
Confidence 99998754
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=4.2e-25 Score=157.78 Aligned_cols=145 Identities=18% Similarity=0.124 Sum_probs=106.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch------hhcc-
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG------VAFY- 78 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~- 78 (165)
.+.++|+++|++|+|||||+++|.+..+.....+..+.+.....+...+ ..+.+||+||...+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999998775433344444555555555555 789999999988776532 3444
Q ss_pred -ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 79 -RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 79 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+... +.+....+.+.....++++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~--~~i~~~~~~l~~~lg~~vi~~SA 148 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKK--TGMKIDRYELQKHLGIPVVFTSS 148 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHH--TTCCBCHHHHHHHHCSCEEECCT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCc--cchHHHHHHHHHHcCCCEEEEEe
Confidence 5899999999999865433 355555432 7899999999999654 33333355566666788999999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+++
T Consensus 149 ~~g~gi~ 155 (258)
T 3a1s_A 149 VTGEGLE 155 (258)
T ss_dssp TTCTTHH
T ss_pred eCCcCHH
Confidence 9998753
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=7.3e-24 Score=154.90 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=109.3
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------- 71 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------- 71 (165)
+..++.-.|+++|.+|+|||||+|+|++..+.... .+..+........... ....+.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45667789999999999999999999998875322 2222233333333444 13789999999986544
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcce--
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIIT-- 149 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 149 (165)
.....+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+.... ....+..+.+.+...
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~~-~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGPA-KNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSSG-GGGHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCCH-HHHHHHHHHHHHhccCC
Confidence 45556788999999999999988888777667766552 78999999999997321 333344444444432
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
..++.+||++|.|++
T Consensus 156 ~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 156 TEIVPISALKGANLD 170 (308)
T ss_dssp CCEEECBTTTTBSHH
T ss_pred CeEEEEeCCCCCCHH
Confidence 679999999998753
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=3.7e-25 Score=159.36 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF 77 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 77 (165)
.++|+++|.+|+|||||+|+|.+..+.....++.+.+.....+...+ ..+.+||+||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999998875444455555666666666665 46788999998876631 1222
Q ss_pred c--ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 78 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
+ +.+|++++|+|+++.++...+ ...+... ++|+++|+||+|+.+. +......+.+.+...++++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~-------~~p~ivv~NK~Dl~~~--~~~~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYL---TLQLLEL-------GIPCIVALNMLDIAEK--QNIRIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH-------TCCEEEEEECHHHHHH--TTEEECHHHHHHHHTSCEEEC
T ss_pred HhhcCCCEEEEEecCCChHHHHHH---HHHHHhc-------CCCEEEEEECccchhh--hhHHHHHHHHHHhcCCCEEEE
Confidence 2 689999999999986555444 3333333 7899999999999654 333334455666666789999
Q ss_pred ccccccCC
Q 031126 156 HGHTNTHS 163 (165)
Q Consensus 156 s~~~~~~~ 163 (165)
||++|.++
T Consensus 149 SA~~g~gi 156 (274)
T 3i8s_A 149 VSTRGRGI 156 (274)
T ss_dssp CCGGGHHH
T ss_pred EcCCCCCH
Confidence 99998775
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=7.2e-25 Score=170.87 Aligned_cols=151 Identities=22% Similarity=0.283 Sum_probs=104.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEE------E--EECCeEEEEEEEeCCCccccccchhh
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------V--QFEDRLFTLQIWDTAGQERFQSLGVA 76 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~D~~g~~~~~~~~~~ 76 (165)
....+||+++|.+|+|||||++++.+..+.....++.+.+..... + ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999887777777766665442 1 12233578999999999999999999
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh-chhHHhhhhcceeceeee
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-CIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~i~~~~~ 155 (165)
+++.+|++++|+|+++. +....|+..+..... +.|+++|+||+|+... +.+ .+..+.+.......++++
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcCCceEEE
Confidence 99999999999999865 456678888877654 6899999999999765 222 233344444455679999
Q ss_pred ccccccCCCC
Q 031126 156 HGHTNTHSNQ 165 (165)
Q Consensus 156 s~~~~~~~~~ 165 (165)
||++|.|+.+
T Consensus 188 SA~~g~gi~e 197 (535)
T 3dpu_A 188 SCKNGDGVES 197 (535)
T ss_dssp CC-----CTT
T ss_pred ecCcccCHHH
Confidence 9999998763
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=1.5e-25 Score=152.53 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF 77 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 77 (165)
+||+++|++|+|||||+++|.+..+...+.++.+..... .... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988766555544333322 2223 588999999 66677777777
Q ss_pred ccc-ccEEEEEEeCCChhhHHHH-HHHHHH--------HHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc
Q 031126 78 YRG-ADCCVLVYDVNSMKSFDNL-NNWREE--------FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI 147 (165)
Q Consensus 78 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (165)
++. ++++++|+++.+..++..+ ..|... +....... +.|+++|+||+|+.........++++.+...
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---DIPTIVAVNKLDKIKNVQEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TCCEEEEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc---CCceEEEeehHhccCcHHHHHHHHHHHhhhh
Confidence 776 7777777777777777665 455432 22221111 7899999999999876311222333333221
Q ss_pred c---eeceeeeccccccCCC
Q 031126 148 I---TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 148 ~---~i~~~~~s~~~~~~~~ 164 (165)
. ...++++||++|.|++
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~ 172 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIE 172 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHH
T ss_pred hhccCCcEEEEecCCCCCHH
Confidence 1 2357999999998864
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=7.2e-24 Score=144.67 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=96.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (165)
...++|+++|++|+|||||+++|.+..... ..++.+.+........+. .+.+||+|| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 456899999999999999999999887432 222322222222222332 477999999 666777777
Q ss_pred hccccc---cEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc--hhHHhhhhcc
Q 031126 76 AFYRGA---DCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC--IFCDVFSSII 148 (165)
Q Consensus 76 ~~~~~~---~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~ 148 (165)
.+++.+ +++++|+|+++..+.. .+..|+... +.|+++|+||+|+......... +..+.+....
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 777655 9999999998754433 233333322 7899999999999765222221 2222233334
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
...++++||++|.|++
T Consensus 167 ~~~~~~~Sa~~~~gv~ 182 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGIS 182 (195)
T ss_dssp CSCEEECCTTTCTTHH
T ss_pred CCceEEEecCCCCCHH
Confidence 4689999999998764
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.90 E-value=1.3e-24 Score=156.18 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=100.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc-
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 79 (165)
..++|+++|++|||||||+|+|.+........+..+.+. ....+.. ...+.+||+||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998764433333333332 2233343 4679999999998775 23445554
Q ss_pred -cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccc
Q 031126 80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGH 158 (165)
Q Consensus 80 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 158 (165)
.+|++++|+|+++.++. ..|..++... +.|+++|+||+|+... +.+....+.+.....++++++||+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~-------~~p~ilv~NK~Dl~~~--~~~~~~~~~l~~~lg~~vi~~SA~ 146 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET-------GIPVTIALNMIDVLDG--QGKKINVDKLSYHLGVPVVATSAL 146 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT-------CSCEEEEEECHHHHHH--TTCCCCHHHHHHHHTSCEEECBTT
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc-------CCCEEEEEEChhhCCc--CCcHHHHHHHHHHcCCCEEEEEcc
Confidence 69999999999986543 3455555442 7899999999999653 222334455555566789999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
+|.+++
T Consensus 147 ~g~gi~ 152 (272)
T 3b1v_A 147 KQTGVD 152 (272)
T ss_dssp TTBSHH
T ss_pred CCCCHH
Confidence 998764
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=6.1e-24 Score=152.77 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--c
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--R 79 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 79 (165)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+...+ ..+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999998876444455556666666677666 4589999999887766 344444 6
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.+|++++|+|+++.. ....|...+.... ..|+++|+||+|+.+. +......+.+.....++++++||++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~--~~~~~~~~~l~~~lg~~~~~~Sa~~ 149 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKK--KGAKIDIKKMRKELGVPVIPTNAKK 149 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHH--HTCCCCHHHHHHHHSSCEEECBGGG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCcc--cccHHHHHHHHHHcCCcEEEEEeCC
Confidence 799999999999853 2333444444331 3899999999998654 3333335666667778899999999
Q ss_pred ccCC
Q 031126 160 NTHS 163 (165)
Q Consensus 160 ~~~~ 163 (165)
|.++
T Consensus 150 g~gi 153 (271)
T 3k53_A 150 GEGV 153 (271)
T ss_dssp TBTH
T ss_pred CCCH
Confidence 9875
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=4.2e-23 Score=150.36 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=97.6
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ 71 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~ 71 (165)
|++. .+..+|+++|.+|+|||||+|+|++..+.... .+.++.+.........+ ..+.+|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence 5654 45678999999999999999999998775322 22222222222233333 6899999999776 34
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch-hchhHHhhhhcce
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VCIFCDVFSSIIT 149 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (165)
.....+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+... +. ..+..+.+. ..
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~--~~ 146 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKY--PEEAMKAYHELL--PE 146 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSS--HHHHHHHHHHTS--TT
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCc--hHHHHHHHHHhc--Cc
Confidence 45556788999999999998865543 3344 3443332 16899999999999765 33 333333331 12
Q ss_pred eceeeeccccccCC
Q 031126 150 LSHTHTHGHTNTHS 163 (165)
Q Consensus 150 i~~~~~s~~~~~~~ 163 (165)
..++++||++|.|.
T Consensus 147 ~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 147 AEPRMLSALDERQV 160 (301)
T ss_dssp SEEEECCTTCHHHH
T ss_pred CcEEEEeCCCCCCH
Confidence 34788999988664
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.2e-24 Score=145.09 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=88.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCC---CCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhcccc--
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 80 (165)
...++|+++|++|+|||||+++|.+..+... ..++.+ .......+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999998876431 111111 11133578999999999998888877765
Q ss_pred --ccEEEEEEeCC-ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 81 --ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 81 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
+|++++|+|++ ++.++..+..|+..+..........+.|+++|+||+|+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 89999998888887765432101117899999999999876
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=7.9e-24 Score=147.69 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=96.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CCCCCceeeeEEEEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS 72 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~ 72 (165)
...++|+|+|.+|+|||||+++|.+.... ....+..+.... ..... .....+.+|||||. +.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 45689999999999999999999988631 111222222222 22232 33367899999993 34455
Q ss_pred chhhcccc---ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc--hhchhHHhhhhc
Q 031126 73 LGVAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVCIFCDVFSSI 147 (165)
Q Consensus 73 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~ 147 (165)
....+++. +|++++|+|++++.+.. ...++..+... ++|+++|+||+|+...... ......+.+...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAPT-------GKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGGG-------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHhc-------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 55556555 78899999998754422 23344444331 7899999999999764211 122333344442
Q ss_pred ------ceeceeeeccccccCCC
Q 031126 148 ------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 148 ------~~i~~~~~s~~~~~~~~ 164 (165)
....++++||++|.|++
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~ 199 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLD 199 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHH
T ss_pred hhcccCCCCeEEEeecCCCcCHH
Confidence 55679999999998864
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.7e-23 Score=159.50 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=102.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLG 74 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 74 (165)
...++|+++|.+|+|||||+|+|++..+. ....++++.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999988753 222334445555556666763 5899999997 3333332
Q ss_pred h-hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhcce
Q 031126 75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSIIT 149 (165)
Q Consensus 75 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~ 149 (165)
. .+++.+|++++|+|++++.+++.. .|...+... ++|+++|+||+|+.+....... ...+.+.....
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~ 322 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA-------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY 322 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc-------CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCC
Confidence 2 467889999999999998887765 455555432 7899999999999865322111 22334444445
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
++++++||++|.|++
T Consensus 323 ~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 323 APILFMSALTKKRIH 337 (436)
T ss_dssp SCEEECCTTTCTTGG
T ss_pred CCEEEEecccCCCHH
Confidence 679999999999875
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=1.1e-22 Score=155.99 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=86.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 77 (165)
..++|+|+|.+|+|||||+|+|.+.... ....++++.+.....+.+++ ..+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4689999999999999999999987643 23344455666666677777 679999999987765433 336
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++++|+|++++.++..+..+...+ .... ++|+++|+||+|+.... .... +.+.+.....++++||
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l~-----~~piIvV~NK~Dl~~~~--~~~~--~~l~~~~~~~~i~vSA 379 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELK-AAHP-----AAKFLTVANKLDRAANA--DALI--RAIADGTGTEVIGISA 379 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHH-HHCT-----TSEEEEEEECTTSCTTT--HHHH--HHHHHHHTSCEEECBT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHH-HhcC-----CCCEEEEEECcCCCCcc--chhH--HHHHhcCCCceEEEEE
Confidence 78899999999999988776443333322 2222 67999999999998763 2221 2222221146899999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+++
T Consensus 380 ktg~GI~ 386 (476)
T 3gee_A 380 LNGDGID 386 (476)
T ss_dssp TTTBSHH
T ss_pred CCCCCHH
Confidence 9998764
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=6.9e-23 Score=154.95 Aligned_cols=147 Identities=24% Similarity=0.281 Sum_probs=102.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch-------hh
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------VA 76 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~ 76 (165)
....++|+|+|++|+|||||+++|++..+. ....+..+.+.....+.+.+. ..+.+|||||++.+.... ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 456789999999999999999999988763 222334445555566666553 278999999998776542 34
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
++..+|++++|+|+.... ....|+..+... ++|+++|+||+|+...... +..+.+.+...+.++++|
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEE
Confidence 678899999999994333 234556655544 7899999999999876322 445556666677899999
Q ss_pred cccccCCCC
Q 031126 157 GHTNTHSNQ 165 (165)
Q Consensus 157 ~~~~~~~~~ 165 (165)
|++|.++.+
T Consensus 177 Aktg~gI~e 185 (423)
T 3qq5_A 177 ALQKKGFDD 185 (423)
T ss_dssp SCCTTSTTT
T ss_pred CCCCCCHHH
Confidence 999988763
No 130
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=8.9e-22 Score=150.06 Aligned_cols=151 Identities=16% Similarity=0.116 Sum_probs=98.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCC-------------------------------CCCCCCceeeeEEEEEEEEC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (165)
....+||+++|++++|||||+++|+.... .....+..+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999965321 01111233344444444444
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhH---H---HHHHHHHHHHHHcCCCCCCCCc-EEEEEeC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF---D---NLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (165)
+ ..+.+||+||++.|...+...+..+|++|+|+|+++.... + ...+.+..+... ++| +|+|+||
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-------~v~~iIvviNK 164 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-------GVKHLIVLINK 164 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-------CCCeEEEEeec
Confidence 4 6899999999999999999999999999999999986431 1 111111111111 566 9999999
Q ss_pred CCCCCCC--Cchhc---hhHHhhh-hc-----ceeceeeeccccccCCC
Q 031126 127 IDVDGGN--SRVVC---IFCDVFS-SI-----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 127 ~Dl~~~~--~~~~~---~~~~~~~-~~-----~~i~~~~~s~~~~~~~~ 164 (165)
+|+.... ..... +....+. .. ..+.++.+||++|.|+.
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLK 213 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccc
Confidence 9996431 01111 1111111 11 14579999999999875
No 131
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=3.5e-22 Score=154.01 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=95.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-------------------------------CCCCCceeeeEEEEEEEECC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQFED 54 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (165)
...+||+++|++++|||||+++|+..... ....+..+.+.....+. .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--T 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--c
Confidence 45799999999999999999999755110 00011112222222233 3
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHH-----HHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-----NNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
....+.+||+||++.|......++..+|++|+|+|++++.++..+ ..+...+..... ..|+|+|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence 346899999999999999999999999999999999987543221 111222222221 3479999999999
Q ss_pred CCCCCchhchhHHhhhhc--------ceeceeeeccccccCCC
Q 031126 130 DGGNSRVVCIFCDVFSSI--------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~~~~ 164 (165)
.+.......+..+.+... ..+.++.+||++|.|+.
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 764212222222222211 14678999999999875
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=2.2e-22 Score=154.21 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=100.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 74 (165)
...++|+++|.+|+|||||+++|.+.... ....++++.+.....+..++ ..+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45789999999999999999999976532 22233334444445556666 4789999999 56666554
Q ss_pred h-hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh----hhcce
Q 031126 75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF----SSIIT 149 (165)
Q Consensus 75 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~ 149 (165)
. .+++.+|++++|+|+++..+.. ...|...+... ++|+++|+||+|+.+.......+..+.+ .....
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~~-------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHEA-------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY 342 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT-------TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHHc-------CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC
Confidence 4 3678999999999999854433 23444444332 7899999999999865322222222222 22234
Q ss_pred eceeeeccccccCCC
Q 031126 150 LSHTHTHGHTNTHSN 164 (165)
Q Consensus 150 i~~~~~s~~~~~~~~ 164 (165)
.+++++||++|.|++
T Consensus 343 ~~~~~~SA~~g~gv~ 357 (456)
T 4dcu_A 343 APILFMSALTKKRIH 357 (456)
T ss_dssp SCEEECCTTTCTTGG
T ss_pred CCEEEEcCCCCcCHH
Confidence 679999999999875
No 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=5.9e-21 Score=136.58 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=85.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccc-----
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR----- 79 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 79 (165)
.+.++|+++|++|+|||||+++|++..... ...+..+..........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 467999999999999999999999887532 2222223334444455565 58999999999887766554443
Q ss_pred ----cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 80 ----GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 80 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+|++++|++++..........|+..+....... ...|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence 7899999999886542223346666666654321 02499999999999643
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=3e-21 Score=145.82 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=103.3
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEE-------E---------EE---CCeEEEEEEEeC
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE-------V---------QF---EDRLFTLQIWDT 64 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~~---~~~~~~~~~~D~ 64 (165)
.....++|+++|++++|||||+++|.+......... ......... . .. ......+.+||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGY-AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEE-EEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCc-cccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 456679999999999999999999987543221100 000000000 0 00 112368999999
Q ss_pred CCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhh
Q 031126 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVF 144 (165)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 144 (165)
||++.|.......+..+|++++|+|++++.+.....+++..+.... ..|+++|+||+|+.+. ....+..+.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~--~~~~~~~~~i 154 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSK--EEALSQYRQI 154 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCH--HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccch--HHHHHHHHHH
Confidence 9999999999999999999999999998766666666666554442 3489999999999865 2222222222
Q ss_pred hhc------ceeceeeeccccccCCC
Q 031126 145 SSI------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 145 ~~~------~~i~~~~~s~~~~~~~~ 164 (165)
.+. ..+.++.+||++|.|+.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~ 180 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINID 180 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHH
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChH
Confidence 221 25679999999998753
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=1.2e-21 Score=153.60 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=97.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC--CCC-----CCC------CceeeeEE--EEEEEE---CCeEEEEEEEeCCCcc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----QYK------ATIGADFL--TKEVQF---EDRLFTLQIWDTAGQE 68 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~---~~~~~~~~~~D~~g~~ 68 (165)
+..||+|+|+.++|||||+++|+... ... ... ...+.+.. ...+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998632 110 000 01111221 122222 4557899999999999
Q ss_pred ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcc
Q 031126 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSII 148 (165)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (165)
+|...+...++.+|++|+|+|+++..+.+....|+..... ++|+++|+||+|+.......+ .+.+.+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--------~ipiIvViNKiDl~~a~~~~v---~~ei~~~l 151 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--------DLEVVPVLNKIDLPAADPERV---AEEIEDIV 151 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--------TCEEEEEEECTTSTTCCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--------CCCEEEeeeccCcccccHHHH---HHHHHHHh
Confidence 9999999999999999999999988777777666655421 789999999999987532221 22222222
Q ss_pred ee---ceeeeccccccCCC
Q 031126 149 TL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i---~~~~~s~~~~~~~~ 164 (165)
.. .++.+||++|.++.
T Consensus 152 g~~~~~vi~vSAktg~GI~ 170 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQ 170 (599)
T ss_dssp CCCCTTCEEECTTTCTTHH
T ss_pred CCCcceEEEeecccCCCch
Confidence 32 48999999998753
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=3.4e-21 Score=150.96 Aligned_cols=149 Identities=14% Similarity=0.208 Sum_probs=101.1
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCC--CCC-----CC--------CC--ceeeeEEEEEEEE-CCeEEEEEEEeCCC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----QY--------KA--TIGADFLTKEVQF-EDRLFTLQIWDTAG 66 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-----~~--------~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~g 66 (165)
..+..||+|+|+.++|||||+++|+... ... .. .+ +.........+.. ++..+.+.+|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999997631 110 00 00 1101111111221 45568999999999
Q ss_pred ccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS 146 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (165)
+.+|...+...+..+|++|+|+|+++..+.+....|..... . ++|+++|+||+|+...... +..+.+.+
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~-------~ipiIvviNKiDl~~a~~~---~v~~el~~ 151 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q-------DLVIIPVINKIDLPSADVD---RVKKQIEE 151 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T-------TCEEEEEEECTTSTTCCHH---HHHHHHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C-------CCCEEEEEeccCccccCHH---HHHHHHHH
Confidence 99999988899999999999999999887777777765442 1 7899999999999875322 22222333
Q ss_pred ccee---ceeeeccccccCCC
Q 031126 147 IITL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 147 ~~~i---~~~~~s~~~~~~~~ 164 (165)
...+ .++.+||++|.|+.
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~ 172 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIE 172 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHH
T ss_pred hhCCCcccEEEEEeecCCCch
Confidence 3232 48999999998753
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.1e-20 Score=140.74 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=102.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVA 76 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 76 (165)
...++++++|.+|+|||||+++|.+........+..+...........+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998764322222222333334444444 6789999999754321 1112
Q ss_pred ccccccEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceee
Q 031126 77 FYRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTH 154 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (165)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+... ..+.+... +.....+.+++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~~~~~~~~-~~~~~~~~~~~ 314 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--ENIKRLEK-FVKEKGLNPIK 314 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--HHHHHHHH-HHHHTTCCCEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--HHHHHHHH-HHHhcCCCeEE
Confidence 335689999999998876 67777788888877643 6799999999999764 33322222 22233467999
Q ss_pred eccccccCCC
Q 031126 155 THGHTNTHSN 164 (165)
Q Consensus 155 ~s~~~~~~~~ 164 (165)
+||++|.+++
T Consensus 315 iSA~~g~gi~ 324 (357)
T 2e87_A 315 ISALKGTGID 324 (357)
T ss_dssp CBTTTTBTHH
T ss_pred EeCCCCcCHH
Confidence 9999998753
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=2.2e-21 Score=149.31 Aligned_cols=147 Identities=17% Similarity=0.188 Sum_probs=96.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC-------CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhh
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA 76 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 76 (165)
...+.++|+++|++++|||||+++|.+.. ......+..+.+.....+.+++ ..+.+||+||++.|......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34567999999999999999999999766 2222222233333333344455 68999999999999888888
Q ss_pred ccccccEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC-chh-chhHHhhh---hcc
Q 031126 77 FYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVV-CIFCDVFS---SII 148 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~-~~~~~~~~---~~~ 148 (165)
.+..+|++++|+|+++ +.+.+.+. .+... ++|+++|+||+|+.+... ... .+..+.+. ...
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~-------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDHF-------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT-------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc-------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 9999999999999987 34433322 22211 678899999999986311 111 12222222 122
Q ss_pred eeceeeeccccccCC
Q 031126 149 TLSHTHTHGHTNTHS 163 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~ 163 (165)
...++.+||++|.|.
T Consensus 162 ~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 162 NSSIIPISAKTGFGV 176 (482)
T ss_dssp GCCEEECCTTTCTTH
T ss_pred cceEEEEECcCCCCH
Confidence 567999999999875
No 139
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=1.6e-20 Score=142.99 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=97.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC--CCC----------CCc---------------------eeeeEEEEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQY----------KAT---------------------IGADFLTKEVQ 51 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~----------~~~---------------------~~~~~~~~~~~ 51 (165)
....+||+++|++++|||||+++|+..... ... ..+ .+.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 345799999999999999999999865411 000 001 11111122222
Q ss_pred ECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
.....+.+||+||++.|......++..+|++|+|+|++++...+. .+++..+... . -.|+++|+||+|+.+
T Consensus 101 --~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~-~-----~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 101 --TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL-G-----IKHIVVAINKMDLNG 171 (434)
T ss_dssp --CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT-T-----CCEEEEEEECTTTTT
T ss_pred --cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-C-----CCeEEEEEEcCcCCc
Confidence 233679999999999999888888999999999999998653332 2333333222 1 236999999999976
Q ss_pred CCCchh---chhHHhhhhc-----ceeceeeeccccccCCC
Q 031126 132 GNSRVV---CIFCDVFSSI-----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 132 ~~~~~~---~~~~~~~~~~-----~~i~~~~~s~~~~~~~~ 164 (165)
...... .+..+.+... ....++.+||++|.|+.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~ 212 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 212 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcc
Confidence 421211 1222222222 23679999999999875
No 140
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=1.7e-22 Score=155.29 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 85 (165)
++..+|+++|++++|||||+++|....+.....+..+.+.....+..++ ..+.||||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999987654332222222222222222333 46889999999999999988999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc-hhH--Hhhhhcc--eeceeeeccccc
Q 031126 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC-IFC--DVFSSII--TLSHTHTHGHTN 160 (165)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~--~~~~~~~--~i~~~~~s~~~~ 160 (165)
+|+|+++....+....| ...... ++|+++++||+|+...+.+.+. ... ..+.+.+ .++++++||++|
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~~-------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKAA-------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHHT-------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEeecccCccHHHHHHH-HHHHhc-------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 99999874322222111 112111 7899999999999764322222 111 1111211 257999999999
Q ss_pred cCCCC
Q 031126 161 THSNQ 165 (165)
Q Consensus 161 ~~~~~ 165 (165)
.|+++
T Consensus 152 ~gI~e 156 (501)
T 1zo1_I 152 TGIDE 156 (501)
T ss_dssp TTCTT
T ss_pred cCcch
Confidence 98753
No 141
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=4.4e-23 Score=159.75 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=102.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 86 (165)
+.++|+++|++++|||||+++|.+..+.....++.+.++....+... ....+.||||||++.|...+..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999998766543333443333333333331 11368899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhh---hc--ceeceeeecccccc
Q 031126 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFS---SI--ITLSHTHTHGHTNT 161 (165)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~--~~i~~~~~s~~~~~ 161 (165)
|+|+++....+....| ..+ ... ++|+++|+||+|+..............+. +. ..+.++++||++|.
T Consensus 82 VVDa~dg~~~qt~e~l-~~~---~~~----~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHA---KDA----HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHH---HTT----TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred EEECCCCccHHHHHHH-HHH---HHc----CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 9999986555443322 222 221 78999999999997654333332222221 11 23579999999998
Q ss_pred CCC
Q 031126 162 HSN 164 (165)
Q Consensus 162 ~~~ 164 (165)
|+.
T Consensus 154 GI~ 156 (537)
T 3izy_P 154 NMM 156 (537)
T ss_dssp SSH
T ss_pred Cch
Confidence 864
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=1.3e-21 Score=150.32 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=99.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhh
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVA 76 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~ 76 (165)
..++|+|+|.+|+|||||+|+|.+.+.. ....++++.+.....+.+++ ..+.+|||||.. .+.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987643 33344455666666677776 568999999987 5542 2235
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeec
Q 031126 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s 156 (165)
+++.+|++|+|+|++++.+++... ++.. .. ++|+++|+||+|+.... ...+..+ +.. ....++++|
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~-----~~piivV~NK~DL~~~~--~~~~~~~-~~~-~~~~~i~iS 385 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILER----IK-----NKRYLVVINKVDVVEKI--NEEEIKN-KLG-TDRHMVKIS 385 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHH----HT-----TSSEEEEEEECSSCCCC--CHHHHHH-HHT-CSTTEEEEE
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHH----hc-----CCCEEEEEECccccccc--CHHHHHH-Hhc-CCCcEEEEE
Confidence 678999999999999887765532 2222 22 77999999999997541 1112111 111 224689999
Q ss_pred cccccCCC
Q 031126 157 GHTNTHSN 164 (165)
Q Consensus 157 ~~~~~~~~ 164 (165)
|++|.+++
T Consensus 386 Aktg~Gi~ 393 (482)
T 1xzp_A 386 ALKGEGLE 393 (482)
T ss_dssp GGGTCCHH
T ss_pred CCCCCCHH
Confidence 99998754
No 143
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.8e-22 Score=152.78 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=97.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCCCC-----------------------------CCceeeeEEEEEEEECC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQY-----------------------------KATIGADFLTKEVQFED 54 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (165)
...+||+++|++++|||||+++|+.. .+.... .+..+.+.....+ ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 45799999999999999999999864 222110 1112222222223 33
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCC-CcEEEEEeCCCCCCCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGNKIDVDGGN 133 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~~ 133 (165)
....+.+||+||+++|...+..++..+|++|+|+|+++ .+++....|..+...........+ .|+++|+||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34679999999999999999999999999999999998 666654433222222111000003 3699999999997631
Q ss_pred --Cch---hchhHHhh-hhcc----eeceeeeccccccCCC
Q 031126 134 --SRV---VCIFCDVF-SSII----TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 134 --~~~---~~~~~~~~-~~~~----~i~~~~~s~~~~~~~~ 164 (165)
... ..+..+.+ ...- .+.++++||++|.|+.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 111 11222222 2211 2679999999998864
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=9.1e-22 Score=145.34 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhcc---ccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFY---RGA 81 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~---~~~ 81 (165)
.+|+|+|.+++|||||+++|..........+..+.......+.+++. ..+.+||+||.. .+..+...++ +.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 47899999999999999999987643222222222222333444431 468999999953 3333444444 459
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccc
Q 031126 82 DCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGH 158 (165)
Q Consensus 82 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 158 (165)
+++|+|+|+++ +.+++.+..|+.++...... ..++|+++|+||+|+.... ....++.+.+... ..++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~~-e~~~~l~~~l~~~--~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEAA-ENLEAFKEKLTDD--YPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTHH-HHHHHHHHHCCSC--CCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCCH-HHHHHHHHHhhcC--CCEEEEECC
Confidence 99999999998 78888888888888765321 1278999999999997541 1122222322221 568999999
Q ss_pred cccCCC
Q 031126 159 TNTHSN 164 (165)
Q Consensus 159 ~~~~~~ 164 (165)
++.++.
T Consensus 313 tg~gi~ 318 (342)
T 1lnz_A 313 TREGLR 318 (342)
T ss_dssp CSSTTH
T ss_pred CCcCHH
Confidence 998763
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.3e-21 Score=151.86 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=97.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-------------------------------CCceeeeEEEEEEEEC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------------------------------KATIGADFLTKEVQFE 53 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 53 (165)
....+||+++|++++|||||+++|+........ .+..+.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345789999999999999999999866322111 0112222222333333
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHH---HHHHHHHHHHHHcCCCCCCC-CcEEEEEeCCCC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD---NLNNWREEFLIQASPSDPDN-FPFVVLGNKIDV 129 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl 129 (165)
+ ..+.||||||++.|.......++.+|++|+|+|++++.... ....+...+...... + .|+|+|+||+|+
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l----gi~~iIVVvNKiDl 317 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDN 317 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT----TCCEEEEEEECTTT
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc----CCCeEEEEEecccc
Confidence 3 67999999999999999999999999999999998743110 011111111111111 3 459999999999
Q ss_pred CCCCCchhchhHHhhhhc--------ceeceeeeccccccCCC
Q 031126 130 DGGNSRVVCIFCDVFSSI--------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~~~~ 164 (165)
.+.......+....+... ..+.++.+||++|.|+.
T Consensus 318 ~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 318 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 360 (611)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTS
T ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcc
Confidence 863212111111112111 14678999999999875
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=8e-21 Score=135.62 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=76.3
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCc-eeeeEEEEEEEECCeEEEEEEEeCCCccccccchh-------
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV------- 75 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------- 75 (165)
....++|+|+|++|+|||||+++|++.... ....++ .+.+.........+ ..+.+|||||...+.....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345689999999999999999999987733 222232 33444444555555 5789999999776543222
Q ss_pred ----hccccccEEEEEEeCCChhhH-HHHHHHHHHHHHHcCCCCCCCCcEEEEEe-CCCCCCC
Q 031126 76 ----AFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGN-KIDVDGG 132 (165)
Q Consensus 76 ----~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~ 132 (165)
.+++.+|++++|+|+++.... ..+..++..+..... ..|+++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-----~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-----MGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-----GGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-----hccEEEEEEcccccCCc
Confidence 256789999999999862211 122233333221110 346666665 9999754
No 147
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=2e-21 Score=149.18 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=84.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC-----------------------------CCCCceeeeEEEEEEEECC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSN-----------------------------QYKATIGADFLTKEVQFED 54 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (165)
...++|+++|++++|||||+++|+.. .+.. ......+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 46799999999999999999999752 1110 0001111122122233333
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh---hHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCC
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVD 130 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (165)
..+.+||+||++.|.......+..+|++|+|+|+++.. +|+...++...+...... ++| +|+|+||+|+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~----~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMDEP 194 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTTST
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc----CCCEEEEEEECccCC
Confidence 67899999999999999888999999999999999863 222112222222221111 667 99999999996
Q ss_pred CCC-Cc-h---hc-hhHHhhhhc------ceeceeeeccccccCCC
Q 031126 131 GGN-SR-V---VC-IFCDVFSSI------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 131 ~~~-~~-~---~~-~~~~~~~~~------~~i~~~~~s~~~~~~~~ 164 (165)
... .+ . .. +....+... ..+.++.+||++|.|+.
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~ 240 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVK 240 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTS
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccc
Confidence 532 11 1 11 222222221 15679999999999875
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=4.5e-20 Score=139.58 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=90.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKA--TIGADFLTKEVQF-------------E--D----RLFTL 59 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 59 (165)
.+...++|+++|+.++|||||+++|.+.. +.....+ |....+....+.. . + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998542 2222222 3323333222211 1 1 13689
Q ss_pred EEEeCCCccccccchhhccccccEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc
Q 031126 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (165)
Q Consensus 60 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 135 (165)
.+||+||++.|.......+..+|++|+|+|++++ .+.+.+. .+. ... ..|+++|+||+|+.+....
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~-~l~-----~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALE-ILG-----IDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHH-HTT-----CCCEEEEEECTTSSCTTTT
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHH-HcC-----CCeEEEEEEccCCCCHHHH
Confidence 9999999999988887888889999999999954 3443332 222 211 3489999999999765311
Q ss_pred --hhchhHHhhhh--cceeceeeeccccccCC
Q 031126 136 --VVCIFCDVFSS--IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 136 --~~~~~~~~~~~--~~~i~~~~~s~~~~~~~ 163 (165)
...+..+.+.. ....+++.+||++|.|+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANI 185 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CH
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCH
Confidence 11122222222 13567999999999875
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=5.6e-20 Score=129.76 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=77.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQE-----------RFQ 71 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~ 71 (165)
....++|+|+|.+|+|||||+|+|++..+.....+ +.+...........+ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 45679999999999999999999999887554433 344444455555666 578999999932 333
Q ss_pred cchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
......++.+|++|+|+|+++.... ...|+..+....... ...|+++|+||+|+...
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc
Confidence 4444455778999999998753331 122333332211100 04599999999999764
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=5.9e-21 Score=137.41 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC--------CCceeeeEEEEEEEECCeEEEEEEEeCCCccc------
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER------ 69 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------ 69 (165)
++...++|+++|.+|+|||||+|+|......... .++.+.+.....+..++..+.+.+|||||...
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 4455799999999999999999998776654332 34445555555555556667999999999632
Q ss_pred -cccch-------hhccc-------------cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 70 -FQSLG-------VAFYR-------------GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 70 -~~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
+.... ..++. .+|+++++++.........-..++..+.. ++|+|+|+||+|
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--------~~pvi~V~nK~D 155 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKAD 155 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--------TSCEEEEESSGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--------cCCEEEEEeccC
Confidence 22222 22222 37799999877653222222233333321 679999999999
Q ss_pred CCCCCCchhchhHHhh---hhcceeceeeeccccccCCC
Q 031126 129 VDGGNSRVVCIFCDVF---SSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 129 l~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~~ 164 (165)
+... .......+.+ .....+.++..|++++.+..
T Consensus 156 ~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~ 192 (274)
T 3t5d_A 156 TLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 192 (274)
T ss_dssp GSCH--HHHHHHHHHHHHHHHHTTCCCCCC---------
T ss_pred CCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHH
Confidence 9754 3332222212 22235567888888776653
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=1.2e-20 Score=144.03 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 78 (165)
.+|+|+|.+|+|||||+|+|.+.... ....+..+.+.....+...+ ..+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 23344445555566666777 4578999999654 234455678
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhccee-ceeeecc
Q 031126 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITL-SHTHTHG 157 (165)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i-~~~~~s~ 157 (165)
+.+|++++|+|+.++.+... .++..+.+.. ++|+++|+||+|+.+. . .......+.. ... .++++||
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~------~~p~ilv~NK~D~~~~--~-~~~~~~~~~~-lg~~~~~~iSA 147 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRKS------TVDTILVANKAENLRE--F-EREVKPELYS-LGFGEPIPVSA 147 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH------TCCEEEEEESCCSHHH--H-HHHTHHHHGG-GSSCSCEECBT
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc------CCCEEEEEeCCCCccc--c-HHHHHHHHHh-cCCCCEEEEec
Confidence 99999999999987655432 2222222211 7899999999998532 1 1111022222 222 5788999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.|+.
T Consensus 148 ~~g~gv~ 154 (439)
T 1mky_A 148 EHNINLD 154 (439)
T ss_dssp TTTBSHH
T ss_pred cCCCCHH
Confidence 9998753
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=1.5e-21 Score=149.28 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=90.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------hc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV--------AF 77 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~ 77 (165)
..++|+++|.+|+|||||+|+|.+..+. ....++.+.+.....+.+++ ..+.+|||||...+..... .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999987543 22334444455445556677 5689999999766543322 35
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecc
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHG 157 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 157 (165)
++.+|++++|+|.+++.+... ..|+..+ . +.|+++|+||+|+... .... ..+.+. ....++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~--~~~~-~~~~~~--~~~~~i~iSA 365 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEK--QLIT-SLEYPE--NITQIVHTAA 365 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCG--GGST-TCCCCT--TCCCEEEEBT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcc--hhhH-HHHHhc--cCCcEEEEEC
Confidence 688999999999998766554 3344433 2 4699999999999765 2221 111111 2346899999
Q ss_pred ccccCCC
Q 031126 158 HTNTHSN 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
++|.+.+
T Consensus 366 ktg~Gi~ 372 (462)
T 3geh_A 366 AQKQGID 372 (462)
T ss_dssp TTTBSHH
T ss_pred CCCCCHH
Confidence 9998753
No 153
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1.5e-20 Score=143.93 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=97.0
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC--CCCCC-----------------------------CCCceeeeEEEEEEEE
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQF 52 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~ 52 (165)
+....++|+++|++++|||||+++|+.. .+... ..+..+.+.....+..
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 4557799999999999999999999864 11100 0011122222223333
Q ss_pred CCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhH---H---HHHHHHHHHHHHcCCCCCCCCc-EEEEEe
Q 031126 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF---D---NLNNWREEFLIQASPSDPDNFP-FVVLGN 125 (165)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~n 125 (165)
. ...+.+||+||++.|.......+..+|++|+|+|+++.... + ...+.+... ... ++| +|+|+|
T Consensus 83 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~------~v~~iivviN 153 (458)
T 1f60_A 83 P--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTL------GVRQLIVAVN 153 (458)
T ss_dssp S--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHT------TCCEEEEEEE
T ss_pred C--CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHc------CCCeEEEEEE
Confidence 3 36899999999999999999999999999999999976322 1 111222222 111 555 999999
Q ss_pred CCCCCCCCCch---hchhHHhh-hhc----ceeceeeeccccccCCC
Q 031126 126 KIDVDGGNSRV---VCIFCDVF-SSI----ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 126 K~Dl~~~~~~~---~~~~~~~~-~~~----~~i~~~~~s~~~~~~~~ 164 (165)
|+|+.+..... ..+..+.+ ... ..+.++.+||++|.|+.
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 99997422121 11222222 221 13679999999999874
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=5.1e-20 Score=139.37 Aligned_cols=149 Identities=16% Similarity=0.163 Sum_probs=97.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKA--TIGADFLTKEVQF-------------E--D----RLFTLQ 60 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 60 (165)
+...++|+++|++++|||||+++|.+.. +.....+ |....+....... . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4667999999999999999999998432 2222223 3323333222211 0 1 136899
Q ss_pred EEeCCCccccccchhhccccccEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-
Q 031126 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR- 135 (165)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~- 135 (165)
+||+||++.|.......+..+|++|+|+|+++. .+.+.+. .+... . ..|+++|+||+|+.+....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~-~-----~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII-G-----QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH-T-----CCCEEEEEECGGGSCHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-----CCcEEEEEECccCCCHHHHH
Confidence 999999999988888888899999999999954 3333332 22222 1 3589999999999864210
Q ss_pred -hhchhHHhhhh--cceeceeeeccccccCC
Q 031126 136 -VVCIFCDVFSS--IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 136 -~~~~~~~~~~~--~~~i~~~~~s~~~~~~~ 163 (165)
...+..+.+.. ...++++.+||++|.|+
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANI 187 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCH
Confidence 11122222222 13567999999999875
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=9.2e-20 Score=135.76 Aligned_cols=147 Identities=19% Similarity=0.106 Sum_probs=92.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhcccc
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAFYRG 80 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~ 80 (165)
.|+++|.+|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|.- .+.... ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998876433333344445566677777 467899999962 122222 34678
Q ss_pred ccEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc---ceeceeee
Q 031126 81 ADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI---ITLSHTHT 155 (165)
Q Consensus 81 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~i~~~~~ 155 (165)
+|++++|+|++++. ..+.+..|...+...... +.|+++|+||+|+..............+... ....++.+
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999998876 555555555555444322 7899999999999764211111122111111 13357899
Q ss_pred ccccccCC
Q 031126 156 HGHTNTHS 163 (165)
Q Consensus 156 s~~~~~~~ 163 (165)
||+++.+.
T Consensus 334 SA~~g~gi 341 (364)
T 2qtf_A 334 SALKRTNL 341 (364)
T ss_dssp BTTTTBSH
T ss_pred ECCCCcCH
Confidence 99998875
No 156
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=2.3e-21 Score=152.31 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=80.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCC-------------------------------CCCCCCceeeeEEEEEEEEC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (165)
....+||+++|++++|||||+++|+.... .....+..+.+.....+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-- 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-- 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE--
Confidence 45678999999999999999999964210 000011222222222222
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh---hH---HHHHHHHHHHHHHcCCCCCCCCc-EEEEEeC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SF---DNLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (165)
.....+.||||||++.|.......+..+|++|+|+|++++. .+ ......+..+ ... ++| +|+|+||
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~l------gip~iIvviNK 324 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RAL------GISEIVVSVNK 324 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HHS------SCCCEEEEEEC
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HHc------CCCeEEEEEec
Confidence 23467899999999999999999999999999999998532 11 0111111111 221 555 9999999
Q ss_pred CCCCCCCCchhchhHHhhhhc---------ceeceeeeccccccCCC
Q 031126 127 IDVDGGNSRVVCIFCDVFSSI---------ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~~~~ 164 (165)
+|+.+..........+.+... ..+.++.+||++|.|+.
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 999763222222222222221 13568999999999875
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=8.6e-21 Score=144.62 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYR 79 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 79 (165)
.+|+++|.+|+|||||+|+|.+...... ..+..+.+.........+ ..+.+|||||.+ .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 6899999999999999999998765421 122222333333333333 579999999975 55666677889
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccc
Q 031126 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHT 159 (165)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 159 (165)
.+|++++|+|+.++.+... .++..+.+ . .++|+++|+||+|+..... ...++. +.-...++.+||++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~---~---~~~pvilv~NK~D~~~~~~-~~~~~~----~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY---R---TKKPVVLAVNKLDNTEMRA-NIYDFY----SLGFGEPYPISGTH 148 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT---T---CCSCEEEEEECCCC------CCCSSG----GGSSCCCEECBTTT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH---H---cCCCEEEEEECccCccchh-hHHHHH----HcCCCCeEEEeCcC
Confidence 9999999999998766543 23333222 1 1789999999999976421 111221 11111578899999
Q ss_pred ccCC
Q 031126 160 NTHS 163 (165)
Q Consensus 160 ~~~~ 163 (165)
|.+.
T Consensus 149 g~gv 152 (436)
T 2hjg_A 149 GLGL 152 (436)
T ss_dssp TBTH
T ss_pred CCCh
Confidence 8775
No 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=1.5e-19 Score=131.61 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=93.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccchh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV 75 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~ 75 (165)
.+..+|+|+|++|+|||||+|+|++..+... ..+..+.......+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3456899999999999999999998865321 112111222222233333 678999999987 3344455
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhccee-ceee
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITL-SHTH 154 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i-~~~~ 154 (165)
.+++.+|++++|+|+++ .+ ....|+..... . . +.|+++|+||+|+... .....+..+.+.+.... .++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~-~---~~P~ilvlNK~D~~~~-~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--E-G---KAPVILAVNKVDNVQE-KADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--S-S---SSCEEEEEESTTTCCC-HHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--h-c---CCCEEEEEECcccCcc-HHHHHHHHHHHHHhcCcCceEE
Confidence 67889999999999976 33 22233333222 1 1 7899999999999762 12233444444443333 5889
Q ss_pred eccccccCC
Q 031126 155 THGHTNTHS 163 (165)
Q Consensus 155 ~s~~~~~~~ 163 (165)
+||++|.+.
T Consensus 154 iSA~~g~~v 162 (301)
T 1ega_A 154 ISAETGLNV 162 (301)
T ss_dssp CCTTTTTTH
T ss_pred EECCCCCCH
Confidence 999888764
No 159
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=4.7e-20 Score=140.70 Aligned_cols=149 Identities=23% Similarity=0.185 Sum_probs=94.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch----------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG---------- 74 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 74 (165)
...++|+|+|++|+|||||+|+|.+.... ....++.+.+.....+.+++. .+.+||++|...+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987642 122233334444455667774 57899999974332211
Q ss_pred --hhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhc----hhHHhhhhcc
Q 031126 75 --VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC----IFCDVFSSII 148 (165)
Q Consensus 75 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~ 148 (165)
..+++.+|++++++|++++.+.... .+...+... +.|+++|+||+|+.+....... ...+.+....
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~~-------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERR-------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC
Confidence 2356789999999999876665442 222222221 7899999999999765211111 2233444444
Q ss_pred eeceeeeccccccCCC
Q 031126 149 TLSHTHTHGHTNTHSN 164 (165)
Q Consensus 149 ~i~~~~~s~~~~~~~~ 164 (165)
..+++++||++|.+++
T Consensus 328 ~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 328 YSPLIFTSADKGWNID 343 (439)
T ss_dssp TSCEEECBTTTTBSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 5678999999998864
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=5.5e-20 Score=138.66 Aligned_cols=147 Identities=15% Similarity=0.092 Sum_probs=94.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC-------CCCC--CC-----CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQ--YK-----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (165)
..+||+++|++++|||||+++|.... +... .. ...+.+.......+......+.+||+||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998631 1100 00 0111122222223333346789999999999988
Q ss_pred chhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCchh---c-hhHHhhhhc
Q 031126 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV---C-IFCDVFSSI 147 (165)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~-~~~~~~~~~ 147 (165)
.....+..+|++|+|+|+++....+....| ..+... ++| +++|+||+|+.+.. ... . +..+.+...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~-------~vp~iivviNK~Dl~~~~-~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI-------GVEHVVVYVNKADAVQDS-EMVELVELEIRELLTEF 152 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT-------TCCCEEEEEECGGGCSCH-HHHHHHHHHHHHHHHHT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc-------CCCeEEEEEECcccCCCH-HHHHHHHHHHHHHHHHc
Confidence 888889999999999999986544333332 222221 678 78999999997531 111 1 122222221
Q ss_pred ----ceeceeeeccccccC
Q 031126 148 ----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 148 ----~~i~~~~~s~~~~~~ 162 (165)
..++++.+||++|.|
T Consensus 153 ~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALE 171 (397)
T ss_dssp TSCTTTSCEEECCHHHHHT
T ss_pred CCCcccCcEEEeehhhccc
Confidence 135789999999765
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=7e-21 Score=145.87 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=86.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCC--------ccccccchh
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGV 75 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~ 75 (165)
......+|+|+|.+|+|||||+|+|.+..+... ..+.+.+..............+.+||||| ++.+.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 445568999999999999999999998765421 12222333333333444446899999999 677777788
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeee
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHT 155 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (165)
.+++.+|++|+|+|..+..+... .++..+.+. .++|+++|+||+|+.+........+...+. ..+.+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~------~~~pvilV~NK~D~~~~~~~~~e~~~lg~~-----~~~~i 164 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAAD--EEVAKILYR------TKKPVVLAVNKLDNTEMRANIYDFYSLGFG-----EPYPI 164 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHH--HHHHHHHTT------CCSCEEEEEECC---------CCSGGGSSS-----SEEEC
T ss_pred hhHhhCCEEEEEEeCCCCCChHH--HHHHHHHHH------cCCCEEEEEECccchhhhhhHHHHHHcCCC-----ceEEe
Confidence 88899999999999886443332 333333222 178999999999997542111111111111 34678
Q ss_pred ccccccCC
Q 031126 156 HGHTNTHS 163 (165)
Q Consensus 156 s~~~~~~~ 163 (165)
||++|.++
T Consensus 165 SA~~g~gv 172 (456)
T 4dcu_A 165 SGTHGLGL 172 (456)
T ss_dssp CTTTCTTH
T ss_pred ecccccch
Confidence 88888764
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=3.4e-20 Score=140.15 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=96.9
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC--------CCCCC---------CCCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--------KFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
....++|+++|++++|||||+++|... .+... .....+.+... ..+......+.+||+||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eEeccCCeEEEEEECCCh
Confidence 456799999999999999999999873 11110 01111222222 233333367899999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCchhc----hhHH
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVC----IFCD 142 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~----~~~~ 142 (165)
++|.......+..+|++|+|+|+++....+ ..+++..+... ++| +++|+||+|+.... .... +..+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~-------~ip~iivviNK~Dl~~~~-~~~~~~~~~~~~ 156 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFMNKVDMVDDP-ELLDLVEMEVRD 156 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT-------TCCCEEEEEECGGGCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEEECccccCcH-HHHHHHHHHHHH
Confidence 999888888899999999999998865433 33444444332 677 89999999997531 1111 1222
Q ss_pred hhhhc----ceeceeeeccccccC
Q 031126 143 VFSSI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 143 ~~~~~----~~i~~~~~s~~~~~~ 162 (165)
.+... ..++++.+||++|.|
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhh
Confidence 22221 135799999999875
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.81 E-value=2.7e-20 Score=144.46 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=84.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC---------------CC-------CCceeeeEEEEEEEECCeEEEEEEEe
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---------------QY-------KATIGADFLTKEVQFEDRLFTLQIWD 63 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (165)
.+..+|+|+|++|+|||||+++|+...... .. .+..+.......+...+ ..+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 457899999999999999999996211000 00 01111222233344444 7899999
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
|||+.+|......+++.+|++|+|+|+++..+.....-|. .+... ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~-------~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR-------HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT-------TCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc-------CCCEEEEEeCCCCccc
Confidence 9999999999999999999999999999876666654443 22221 7899999999999754
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=139.56 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=77.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCC-C--------CCceeeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-Y--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 69 (165)
...++|+|+|++|+|||||+++|........ + .++.+.......+...+....+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4468999999999999999999876543221 1 123333333333444566678999999998 56
Q ss_pred cccchh-------hccccc-------------cEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 70 FQSLGV-------AFYRGA-------------DCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 70 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
+..... .+++.+ |+++|+++.. ..++..+. .|+..+ . .++|+|+|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence 666654 444433 3455555542 23333332 333332 2 1789999999999
Q ss_pred CCCCCCchhch---hHHhhhhcceeceeeeccccccC
Q 031126 129 VDGGNSRVVCI---FCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 129 l~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
+... +.+.. ....+.....+.++++||++|.+
T Consensus 186 l~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 186 TLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp SSCH--HHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred CCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 9765 44332 33344445577899999999876
No 165
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=3.2e-20 Score=131.71 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=76.8
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCc--eeeeEEEEEEEECCeEEEEEEEeCCCc--------cccccch
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLG 74 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~ 74 (165)
....+||+++|.+|+|||||+|+|++.........+ .+..........++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 456799999999999999999999988765443322 22333334445555 67899999995 3333333
Q ss_pred hhcc----ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 75 VAFY----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 75 ~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
...+ +.+|++|+|+|+++. +.. ...++..+...+. ....+.|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~-~~~-~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRF-TAQ-DQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBC-CHH-HHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCCEEEEEEeCCCC-CHH-HHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC
Confidence 3333 889999999999852 211 1222333333221 11116799999999999764
No 166
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=3.6e-19 Score=127.81 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=80.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhh-------c
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-------F 77 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~ 77 (165)
...++|+++|.+|+|||||+|+|.+..+... .....+...........+ ..+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 3579999999999999999999998775321 112222222233334444 67999999998766533221 1
Q ss_pred --cccccEEEEEEeCCChhhHH-HHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 78 --YRGADCCVLVYDVNSMKSFD-NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 78 --~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+.+|++++|+|++... +. ....|+..+...+... ...|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 24689999999987532 32 2346666666554310 02699999999999754
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.81 E-value=8.3e-20 Score=143.33 Aligned_cols=115 Identities=30% Similarity=0.348 Sum_probs=80.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC----CCceeeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEV------------QFEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~ 69 (165)
.+.++|+|+|++++|||||+++|.+..+.... ..+.+..+..... ........+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45689999999999999999999876443211 1122222211100 0000112589999999999
Q ss_pred cccchhhccccccEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (165)
|...+...++.+|++|+|+|+++ +.+++.+.. +... ++|+++|+||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~-------~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY-------RTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT-------TCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc-------CCeEEEEeccccccc
Confidence 99999888999999999999998 566554432 2211 789999999999965
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2e-19 Score=130.59 Aligned_cols=151 Identities=13% Similarity=0.183 Sum_probs=91.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC------CCce----------------------eee-------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATI----------------------GAD------------- 44 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~~~------------- 44 (165)
...++|+|+|.+|+|||||+|+|++..+.+.. .++. +.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988764211 1110 000
Q ss_pred ----------EEEEEEEECCeEEEEEEEeCCCcc-------------ccccchhhccccccEEE-EEEeCCChhhHHHHH
Q 031126 45 ----------FLTKEVQFEDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNSMKSFDNLN 100 (165)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 100 (165)
.....+.. .....+.+|||||.. .+......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~-~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEE-TTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeC-CCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000000 112578999999964 33445556777888666 699998765544433
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhc--ceeceeeeccccccCCC
Q 031126 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSI--ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~~ 164 (165)
.++..+.. . +.|+++|+||+|+.+............+... ....++.+||++|.+++
T Consensus 183 ~~~~~~~~----~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 183 KIAKEVDP----Q---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp HHHHHHCT----T---CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCB
T ss_pred HHHHHhCC----C---CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccc
Confidence 34444322 1 7899999999999765321111111111111 12468899999998865
No 169
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.79 E-value=5.6e-19 Score=129.35 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=78.4
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHHHcCCCCCCC
Q 031126 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDN 117 (165)
Q Consensus 48 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
..+..++ +.+.+||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+..... ..+
T Consensus 160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~---~~~ 234 (327)
T 3ohm_A 160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW---FQN 234 (327)
T ss_dssp EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG---GTT
T ss_pred EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc---cCC
Confidence 3344444 88999999999999999999999999999999654 66667776666666654322 228
Q ss_pred CcEEEEEeCCCCCCCCC---------------chhchhHHhh----------hhcceeceeeeccccccCC
Q 031126 118 FPFVVLGNKIDVDGGNS---------------RVVCIFCDVF----------SSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 118 ~piilv~nK~Dl~~~~~---------------~~~~~~~~~~----------~~~~~i~~~~~s~~~~~~~ 163 (165)
+|++|++||+|+.++.- ....+.+..+ .....+.+.++||+++.|+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 89999999999864310 0011222222 2335677889999998775
No 170
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.79 E-value=3.2e-19 Score=132.21 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=80.5
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHHHcCCCCCCC
Q 031126 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (165)
Q Consensus 48 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+..... ..+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~---~~~ 260 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW---FTD 260 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG---GTT
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc---ccC
Confidence 3344444 789999999999999999999999999999999998 5668877777777765322 127
Q ss_pred CcEEEEEeCCCCCCCCC--------------chhchhHHhhh-----------hcceeceeeeccccccCCC
Q 031126 118 FPFVVLGNKIDVDGGNS--------------RVVCIFCDVFS-----------SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 118 ~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~~~~ 164 (165)
+|+|||+||+|+..... ....+.+..+. ....+.+.++||++|.|+.
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 89999999999953210 00011111111 1356789999999988753
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=1.4e-19 Score=135.14 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=89.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEe
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (165)
+|+++|++++|||||+++|+.. ..+.+.....+...+ ..+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~--------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK--------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE--------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhC--------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 9999999999999999999821 111222222333333 579999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCCCCCcE-EEEEe-CCCCCCCCCchhc----hhHHhhhhc--ceeceee--ecccc
Q 031126 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGN-KIDVDGGNSRVVC----IFCDVFSSI--ITLSHTH--THGHT 159 (165)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~~~----~~~~~~~~~--~~i~~~~--~s~~~ 159 (165)
+.. ......+++..+... ++|. ++++| |+|+ +. +... +..+.+... ..++++. +||++
T Consensus 93 -~~g-~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~--~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL-------GFKHGIIALTRSDST-HM--HAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CH--HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred -CCC-CcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CH--HHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 543 333344444444332 6676 89999 9999 43 2222 222222221 2356889 99999
Q ss_pred ---ccCC
Q 031126 160 ---NTHS 163 (165)
Q Consensus 160 ---~~~~ 163 (165)
+.++
T Consensus 161 ~~~g~gi 167 (370)
T 2elf_A 161 KNPFEGV 167 (370)
T ss_dssp SSTTTTH
T ss_pred CcCCCCH
Confidence 7764
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=1.5e-18 Score=134.84 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=80.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-----------C---------Cceeee--EEEEEEEECCeEEEEEEEe
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------K---------ATIGAD--FLTKEVQFEDRLFTLQIWD 63 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~---------~~~~~~--~~~~~~~~~~~~~~~~~~D 63 (165)
.+.++|+|+|++|+|||||+++|+........ . ...+.+ .....+...+ ..+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 45799999999999999999999863211000 0 000111 1112233334 7899999
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
|||+.+|......+++.+|++|+|+|+++..... ...+...+... ++|+++|+||+|+....
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-----t~~~~~~~~~~---~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-----TRKLMEVTRLR---DTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-----HHHHHHHHTTT---TCCEEEEEECTTSCCSC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-----HHHHHHHHHHc---CCCEEEEEcCcCCcccc
Confidence 9999999988888999999999999998764322 22222222222 78999999999997753
No 173
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=3.9e-19 Score=131.72 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=61.9
Q ss_pred eEEEEEEEeCCCccccccchhhccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEE
Q 031126 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (165)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (165)
..+.+.+||++|++.++..+..++++++++|+|||++ +..++++...|+..+...... .++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~---~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF---EKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG---SSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc---CCCeEEEEE
Confidence 5689999999999999999999999999999999998 778888888888877653221 278999999
Q ss_pred eCCCCCC
Q 031126 125 NKIDVDG 131 (165)
Q Consensus 125 nK~Dl~~ 131 (165)
||+|+.+
T Consensus 258 NK~DL~~ 264 (354)
T 2xtz_A 258 NKFDIFE 264 (354)
T ss_dssp ECHHHHH
T ss_pred ECcchhh
Confidence 9999854
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=6.9e-19 Score=144.84 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=95.1
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCC-------CCC--CC-----CCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSN--QY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (165)
+....++|+++|++++|||||+++|.... +.. .. ..+.+.+.......+......+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998631 000 00 01111111111223333446889999999999
Q ss_pred cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCCCCch--hc-hhHHhhh
Q 031126 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRV--VC-IFCDVFS 145 (165)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~-~~~~~~~ 145 (165)
|.......+..+|++|+|+|+++....+ ..+++..+... ++| +|+|+||+|+.+..... +. +..+.+.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 9988888899999999999999864333 23334333332 678 89999999998631111 11 1212222
Q ss_pred hc----ceeceeeeccccccC
Q 031126 146 SI----ITLSHTHTHGHTNTH 162 (165)
Q Consensus 146 ~~----~~i~~~~~s~~~~~~ 162 (165)
.. ..++++.+||++|.+
T Consensus 444 ~~G~~~~~vp~IpvSAktG~n 464 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALE 464 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTT
T ss_pred hccccccceeEEEEEeccCCC
Confidence 21 136799999999853
No 175
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=1.5e-18 Score=127.58 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=62.7
Q ss_pred EEEEEEEeCCCccccccchhhccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEe
Q 031126 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125 (165)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (165)
.+.+.+||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+...... .++|++|++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~---~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL---KGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG---TTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc---CCCeEEEEEE
Confidence 478999999999999999999999999999999998 678888888887777654322 2889999999
Q ss_pred CCCCCC
Q 031126 126 KIDVDG 131 (165)
Q Consensus 126 K~Dl~~ 131 (165)
|+|+..
T Consensus 237 K~DL~~ 242 (340)
T 4fid_A 237 KMDLFE 242 (340)
T ss_dssp CHHHHH
T ss_pred Cchhhh
Confidence 999864
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=7.2e-18 Score=134.71 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=86.1
Q ss_pred CcccceeeEEEEEcCCCCChHHHHHHHhcCC--CC------CC--C--------CCceeeeEEEEEEEECCeEEEEEEEe
Q 031126 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS------NQ--Y--------KATIGADFLTKEVQFEDRLFTLQIWD 63 (165)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~------~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (165)
+....+..+|+|+|++|+|||||+++|+... +. .. . ....+.......+...+ ..+.+||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 3455678999999999999999999998421 10 00 0 01111111122333344 7899999
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
|||+.+|...+..+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+...
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence 99999999999999999999999999998877776655543 2222 7899999999999865
No 177
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.74 E-value=3.3e-18 Score=139.15 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=86.8
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCC------------------CCCCceeeeEEEEEEE------------EC
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------QYKATIGADFLTKEVQ------------FE 53 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~------------~~ 53 (165)
.....+||+|+|++++|||||+++|+...... ....+.........+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 45567899999999999999999998641100 0011211122222222 13
Q ss_pred CeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+..+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.... .. ++|+++|+||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~-------~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE-------RIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc-------CCCeEEEEECCCcc
Confidence 44689999999999999999999999999999999999987777765554432 11 78999999999986
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=5.8e-18 Score=116.82 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=84.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGV 75 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 75 (165)
....+|+++|++|+|||||++++.+..+.....++.+.......+.+++ .+.+||+||... ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457999999999999999999997764333333333333223333333 477999999742 222222
Q ss_pred hcc---ccccEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh--chhHHhhhhc-
Q 031126 76 AFY---RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV--CIFCDVFSSI- 147 (165)
Q Consensus 76 ~~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~- 147 (165)
.++ ..++++++++|+..+.+... +..|+. .. +.|+++|+||+|+.....+.. ......+.+.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~-------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---DS-------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT-------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---Hc-------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 333 46899999999987655432 222222 11 789999999999876421222 2222222222
Q ss_pred ceeceeeeccccccCC
Q 031126 148 ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 148 ~~i~~~~~s~~~~~~~ 163 (165)
..+....+||+++.+.
T Consensus 171 ~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 171 GDVQVETFSSLKKQGV 186 (210)
T ss_dssp SCEEEEECBTTTTBSH
T ss_pred CCCceEEEeecCCCCH
Confidence 2356788999998764
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=3.3e-17 Score=130.95 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=83.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc--CCCCCC---C-------------CCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN--KKFSNQ---Y-------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.+..+|+|+|++|+|||||+++|+. +.+... . .+..+.......+...+ ..+.+|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4578999999999999999999985 221100 0 00111111122233444 68999999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+|......+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~-------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY-------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc-------CCCEEEEEECCCcccc
Confidence 9999999999999999999999998777766555443 3322 7899999999999875
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=5.4e-18 Score=126.29 Aligned_cols=149 Identities=12% Similarity=0.152 Sum_probs=90.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEE--------------------------------------
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-------------------------------------- 48 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 48 (165)
...+|+|+|++|||||||+|+|.+..+.+......+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999876333222111000000
Q ss_pred --------------EEE-ECCeEEEEEEEeCCCcccc-------------ccchhhccccccEEEEEEeCCChhhHHHHH
Q 031126 49 --------------EVQ-FEDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNSMKSFDNLN 100 (165)
Q Consensus 49 --------------~~~-~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 100 (165)
... .......+.+||+||...+ ......+++.+|++|+++|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 000 0011235889999997765 455667789999999999875433221 2
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeeccccccC
Q 031126 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNTH 162 (165)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 162 (165)
.|+..+...... +.|+++|+||+|+.+.... .....+.........++..+++.+.+
T Consensus 191 ~~~~l~~~~~~~----~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 191 DAIKISREVDPS----GDRTFGVLTKIDLMDKGTD-AVEILEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp HHHHHHHHSCTT----CTTEEEEEECGGGCCTTCC-SHHHHTTSSSCCSSCCEEECCCCHHH
T ss_pred HHHHHHHHhccc----CCCEEEEEeCCccCCCccc-HHHHHcCccccccCCeEEEEECChHH
Confidence 233333222221 6799999999999765322 12223333444556678888877654
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=3e-17 Score=131.23 Aligned_cols=120 Identities=14% Similarity=0.238 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCcee-eeEE------EEEEEE-------------------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIG-ADFL------TKEVQF------------------------- 52 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~------~~~~~~------------------------- 52 (165)
...++|+|+|.+|+|||||+|+|++....+.. .+++. .... ..+..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 45789999999999999999999987754322 22210 0000 001111
Q ss_pred ---------------------CCeE--EEEEEEeCCCccc---cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHH
Q 031126 53 ---------------------EDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF 106 (165)
Q Consensus 53 ---------------------~~~~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 106 (165)
.... ..+.+|||||... .......+++.+|++++|+|++++.+..+...|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0000 2488999999654 3345556788999999999999887777665554333
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 107 LIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 107 ~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
... +.|+++|+||+|+...
T Consensus 227 ~~~-------~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KGR-------GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTS-------CCCEEEEEECGGGGGG
T ss_pred Hhh-------CCCEEEEEECcccccc
Confidence 211 6689999999999643
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=5.1e-18 Score=124.10 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=45.3
Q ss_pred EEEEEEeCCCccc-------------cccchhhccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEE
Q 031126 57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVV 122 (165)
Q Consensus 57 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (165)
..+.+|||||... +......+++.+|++++|+|..+.. .......+...+. .. +.|+++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~---~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PE---GKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SS---CSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CC---CCcEEE
Confidence 4689999999643 4445556778999999999974322 1111112222221 11 789999
Q ss_pred EEeCCCCCCC
Q 031126 123 LGNKIDVDGG 132 (165)
Q Consensus 123 v~nK~Dl~~~ 132 (165)
|+||+|+...
T Consensus 204 v~NK~Dl~~~ 213 (315)
T 1jwy_B 204 VITKLDLMDK 213 (315)
T ss_dssp EEECTTSSCS
T ss_pred EEcCcccCCc
Confidence 9999999765
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=1.9e-17 Score=131.79 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=81.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (165)
.+..+|+|+|++|+|||||+++|+........ ....+.......+... .+.+.+||+||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 45789999999999999999999843221000 0111122222233333 478999999999
Q ss_pred cccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
.+|......+++.+|++++|+|+++....... .++..+... ++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~-------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL-------GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc-------cCCEEEEecCCchh
Confidence 99998888999999999999998876444333 333333322 78999999999997
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=2e-17 Score=124.46 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCcee--eeEEEEEE-------------------EECC-eEEEEEEEeCCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--ADFLTKEV-------------------QFED-RLFTLQIWDTAG 66 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~-------------------~~~~-~~~~~~~~D~~g 66 (165)
++|+|+|.+|+|||||+|+|.+........+..+ ........ .+++ ....+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998763222222111 11111111 1122 246799999999
Q ss_pred ccc----cccchh---hccccccEEEEEEeCCCh
Q 031126 67 QER----FQSLGV---AFYRGADCCVLVYDVNSM 93 (165)
Q Consensus 67 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 93 (165)
... .+.... ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 446899999999999875
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=9.8e-17 Score=128.39 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=84.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCC--CCCC-----------C-----CCceeeeEEEEEEEE-----CCeEEEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------Y-----KATIGADFLTKEVQF-----EDRLFTLQI 61 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~-----~~~~~~~~~ 61 (165)
..+.+||+|+|+.|+|||||+++|+... +... . ....+.......+.+ .+..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567999999999999999999997531 1100 0 011111111122222 223478999
Q ss_pred EeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
|||||+.+|...+..+++.+|++|+|+|+++.........|.. .... ++|+++|+||+|+....
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~-------~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY-------KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc-------CCCEEEEEeCCCccccc
Confidence 9999999999899999999999999999998765554433332 2211 78999999999997653
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=2.3e-17 Score=128.69 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=78.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC---CCCCCceeeeEEEEE----------------------EE-E-----CC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE----------------------VQ-F-----ED 54 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~-~-----~~ 54 (165)
....+|+|+|.+|+|||||+|+|++..+. ....+++........ +. + .+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999988763 111222111000000 00 0 00
Q ss_pred eE---------EEEEEEeCCCccc-----------cccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCC
Q 031126 55 RL---------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 114 (165)
Q Consensus 55 ~~---------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (165)
.. ..+.+|||||... +......++..+|++++|+|+++.........|+..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH----- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----
Confidence 00 2488999999764 3445556778999999999998754444445555544321
Q ss_pred CCCCcEEEEEeCCCCCCC
Q 031126 115 PDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 115 ~~~~piilv~nK~Dl~~~ 132 (165)
+.|+++|+||+|+...
T Consensus 218 --~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVET 233 (550)
T ss_dssp --GGGEEEEEECGGGSCH
T ss_pred --CCCEEEEEECCCccCH
Confidence 6799999999999764
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=5.6e-16 Score=120.87 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=85.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC----------------------CCCCCCceeeeEEEEEEEECCeEEEEEEEe
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF----------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (165)
.+..||+|+|+.++|||||..+|+...- .....+..+.......+.+.+ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 4579999999999999999999963210 011111122222233444555 7889999
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 134 (165)
|||+.+|.......++-+|++|+|+|+...-..+...-|.... .. ++|++++.||+|....+.
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~-------~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR-------ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCCEEEEEECTTSCCCCH
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh-------CCceEEEEecccchhcch
Confidence 9999999999999999999999999999876665554454333 22 889999999999987643
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=6.7e-17 Score=120.12 Aligned_cols=151 Identities=11% Similarity=0.135 Sum_probs=83.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCC------Ccee----------------------ee-------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIG----------------------AD------------- 44 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------~~~~----------------------~~------------- 44 (165)
....+|+|+|.+|+|||||+|+|++..+.+... ++.. .+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999887642211 1100 00
Q ss_pred --------EEEEEEEE-CCeEEEEEEEeCCCcc-------------ccccchhhcccccc-EEEEEEeCCChhhHHHHHH
Q 031126 45 --------FLTKEVQF-EDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNN 101 (165)
Q Consensus 45 --------~~~~~~~~-~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 101 (165)
.....+.+ ......+.+|||||.. .+......++..++ ++++++|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00000000 1112468999999953 23344555665554 5555667665332222222
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHh--hh-hcceeceeeeccccccCCC
Q 031126 102 WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDV--FS-SIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~-~~~~i~~~~~s~~~~~~~~ 164 (165)
++..+. . . +.|+++|+||+|+.+....... ..+. +. ..-...++.+||+++.++.
T Consensus 189 i~~~~~---~-~---~~~~i~V~NK~Dl~~~~~~~~~-~~~~~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 189 VAKEVD---P-Q---GQRTIGVITKLDLMDEGTDARD-VLENKLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp HHHHHC---T-T---CTTEEEEEECGGGSCTTCCCHH-HHTTCSSCCTTCEEECCCCCHHHHHTTC
T ss_pred HHHHhC---c-C---CCceEEEeccccccCcchhHHH-HHhCCcccccCCceEEEeCCcccccccc
Confidence 333322 1 1 7899999999999765321111 1110 00 0112357789999887764
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.66 E-value=1.5e-17 Score=121.12 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=96.1
Q ss_pred HHHHHHhcCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCChh-hHHHHH
Q 031126 23 SLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLN 100 (165)
Q Consensus 23 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 100 (165)
+|+.++..+.|. ..+.++.+..+ ......++ .+.+||+ ++.++.++..+++.+|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 77788887443 33332222 6899999 8999999999999999999999999987 788889
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchh---chhHHhhhhcceeceeeeccccccCCC
Q 031126 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV---CIFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.|+..+... ++|+++|+||+|+.+. +.+ .++++.+... ..++++||++|.|++
T Consensus 106 ~~l~~~~~~-------~~piilv~NK~DL~~~--~~v~~~~~~~~~~~~~--~~~~~~SAktg~gv~ 161 (301)
T 1u0l_A 106 KFLVLAEKN-------ELETVMVINKMDLYDE--DDLRKVRELEEIYSGL--YPIVKTSAKTGMGIE 161 (301)
T ss_dssp HHHHHHHHT-------TCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTT--SCEEECCTTTCTTHH
T ss_pred HHHHHHHHC-------CCCEEEEEeHHHcCCc--hhHHHHHHHHHHHhhh--CcEEEEECCCCcCHH
Confidence 998877542 7899999999999764 332 2333333332 679999999998864
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=9.3e-17 Score=116.90 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=70.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC-CCCCCC--------CCceeeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK-KFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 69 (165)
.-.++|+++|++|+|||||+++|... .++... .++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44689999999999999999998765 332221 011111111111222334468999999997 44
Q ss_pred cccchh-------hcccc-------------ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCC
Q 031126 70 FQSLGV-------AFYRG-------------ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (165)
Q Consensus 70 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (165)
+..... .+++. +++++|+.+.+. .+++.+. ...+..... +.|+++|+||+|+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~-----~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHN-----KVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTT-----TSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHh-----cCCEEEEEEeCCC
Confidence 554443 33322 233444444332 1222222 122222221 6799999999999
Q ss_pred CCCCCchhc---hhHHhhhhcceeceeeeccccccCCC
Q 031126 130 DGGNSRVVC---IFCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 130 ~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
... +... +....+.....+.++++||++| +++
T Consensus 168 ~~~--~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 168 LTL--KERERLKKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp SCH--HHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred CCH--HHHHHHHHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 764 2222 2333344445678999999999 765
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=117.60 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=72.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC--------CCceeeeEEEEEEEECCeEEEEEEEeCCCccccc------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------ 71 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 71 (165)
.-.++|+|+|++|+|||||+++|.+..+.... ..+.............+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999987653221 1111111111111222333478999999965431
Q ss_pred -c------------------chhhccccccEEEEEEeCCCh-hhHHHHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 72 -S------------------LGVAFYRGADCCVLVYDVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 72 -~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
. ....++.++++.+++|+.... .++.... .|+..+. . ++|+|+|+||+|+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-----~v~iIlVinK~Dll 180 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-----KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-----TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-----cCcEEEEEEcccCc
Confidence 1 112234445443333333321 2232322 4555442 1 78999999999997
Q ss_pred CCCCchhch---hHHhhhhcceeceeeeccccccCCC
Q 031126 131 GGNSRVVCI---FCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 131 ~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.. +.+.. ..........+.+++.|++++.+++
T Consensus 181 ~~--~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~ 215 (418)
T 2qag_C 181 TP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 215 (418)
T ss_dssp CH--HHHHHHHHHHHHHHHHHTCCCCCCC--------
T ss_pred cH--HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHH
Confidence 64 33332 2222223346778999998887754
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.63 E-value=9.7e-16 Score=115.68 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhc---cccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGA 81 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 81 (165)
..|+|+|++|||||||++++..........+..+.......+..++ ...+.+||+||... +......+ ++.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3578999999999999999987743211111111222222333332 24688999999632 22222222 3569
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhhcceeceeeecccccc
Q 031126 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSSIITLSHTHTHGHTNT 161 (165)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 161 (165)
+.+++++|++ +..+..+..|..++...... ....|.++|+||+|+... .......+.+. .....++.+||+++.
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~a--L~~~P~ILVlNKlDl~~~--~~~~~l~~~l~-~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVDLLEE--EAVKALADALA-REGLAVLPVSALTGA 310 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCTTSCH--HHHHHHHHHHH-TTTSCEEECCTTTCT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHH--hhcCCEEEEEECCChhhH--HHHHHHHHHHH-hcCCeEEEEECCCcc
Confidence 9999999998 55677777777666654210 005699999999999754 22223323332 224568999999987
Q ss_pred CC
Q 031126 162 HS 163 (165)
Q Consensus 162 ~~ 163 (165)
++
T Consensus 311 gi 312 (416)
T 1udx_A 311 GL 312 (416)
T ss_dssp TH
T ss_pred CH
Confidence 75
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=3.1e-15 Score=110.85 Aligned_cols=84 Identities=24% Similarity=0.149 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ-- 71 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~-- 71 (165)
++|+|+|.+|+|||||+|+|.+........+..+.+.....+.+.+. +..+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643222222111111122333332 1479999999976542
Q ss_pred --cc---hhhccccccEEEEEEeCCC
Q 031126 72 --SL---GVAFYRGADCCVLVYDVNS 92 (165)
Q Consensus 72 --~~---~~~~~~~~~~~i~v~d~~~ 92 (165)
.+ ....++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2234689999999999986
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.62 E-value=4.8e-15 Score=118.94 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=84.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC--------CC----------CCCCCceeeeEEEEEEEEC-----CeEEEEEEE
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--------FS----------NQYKATIGADFLTKEVQFE-----DRLFTLQIW 62 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 62 (165)
.+..||+|+|+.++|||||..+|+... .. ....+..+.......+.+. ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 578999999999999999999997321 10 0111111122222233332 235889999
Q ss_pred eCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
||||+.+|.......++-+|++|+|+|+...-..+...-|..... . ++|.++|.||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~-------~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y-------GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H-------TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c-------CCCeEEEEccccccCcc
Confidence 999999999999999999999999999997655554444444433 2 88999999999997764
No 195
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.60 E-value=3.8e-15 Score=111.79 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=67.5
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHHHcCCCCCCC
Q 031126 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (165)
Q Consensus 48 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++++...|+..+..... ..+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~---~~~ 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW---LRT 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT---CSS
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc---CCC
Confidence 4455555 899999999999999999999999999999999998 8899999999888765422 227
Q ss_pred CcEEEEEeCCCCCC
Q 031126 118 FPFVVLGNKIDVDG 131 (165)
Q Consensus 118 ~piilv~nK~Dl~~ 131 (165)
+|++||+||+|+..
T Consensus 285 ~piiLvgNK~DL~~ 298 (402)
T 1azs_C 285 ISVILFLNKQDLLA 298 (402)
T ss_dssp CCEEEEEECHHHHH
T ss_pred CeEEEEEEChhhhh
Confidence 89999999999854
No 196
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.58 E-value=4e-15 Score=110.61 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=58.9
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHHHcCCCCCCC
Q 031126 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (165)
Q Consensus 48 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+...... .+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~---~~ 268 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF---SN 268 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG---TT
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh---CC
Confidence 4445554 889999999999999999999999999999999998 77888888888877654221 27
Q ss_pred CcEEEEEeCCCCC
Q 031126 118 FPFVVLGNKIDVD 130 (165)
Q Consensus 118 ~piilv~nK~Dl~ 130 (165)
+|+|||+||+|+.
T Consensus 269 ~piILv~NK~DL~ 281 (362)
T 1zcb_A 269 VSIILFLNKTDLL 281 (362)
T ss_dssp SEEEEEEECHHHH
T ss_pred CCEEEEEEChhhh
Confidence 8999999999986
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.8e-15 Score=109.25 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG 80 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 80 (165)
..+|.|+|.||+|||||+|+|++........++.+.+.....+.+.+ ..+.++|+||-..-. ......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998876655566677777777888888 567888999942211 122234578
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
||++++|+|+.++... ......++..... ...+.|.+++.||.|..
T Consensus 150 ad~il~vvD~~~p~~~--~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHH--KQIIEKELEGVGI--RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHH--HHHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHH--HHHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence 9999999999987432 2222233332211 11156888999999974
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=2e-14 Score=106.97 Aligned_cols=82 Identities=24% Similarity=0.199 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEEECC-------------------eEEEEEEEeCCCc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFED-------------------RLFTLQIWDTAGQ 67 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~ 67 (165)
++|+|+|.+|+|||||+|++.+........+ |...+.... .+.+ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999987653211111 222222221 2221 2357999999997
Q ss_pred cccc----cc---hhhccccccEEEEEEeCCC
Q 031126 68 ERFQ----SL---GVAFYRGADCCVLVYDVNS 92 (165)
Q Consensus 68 ~~~~----~~---~~~~~~~~~~~i~v~d~~~ 92 (165)
.... .+ ....++.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6542 12 2234689999999999975
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.52 E-value=1e-15 Score=121.37 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=81.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCC--CC----CCCCc----------eeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKF--SN----QYKAT----------IGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~--~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (165)
++.||+|+|+.++|||||..+|+...- .. ....+ -+.+.......+..+...++|+||||+.+|
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 357999999999999999999974210 00 00000 011111112222333467899999999999
Q ss_pred ccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCC
Q 031126 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (165)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (165)
.......++.+|++|+|+|+...-..+...-|... ... ++|.|++.||+|....+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~-------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM-------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH-------TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc-------CCCeEEEEeccccccCC
Confidence 99999999999999999999976544443333333 233 88999999999987654
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=2.2e-15 Score=112.07 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=57.3
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
+.+.||||||.. ......++.+|++++|+|.........+. . ...+.|+++|+||+|+... ..
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-----~~~~~p~ivVlNK~Dl~~~--~~ 234 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIK-------K-----GVLELADIVVVNKADGEHH--KE 234 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-----TSGGGCSEEEEECCCGGGH--HH
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHH-------H-----hHhhcCCEEEEECCCCcCh--hH
Confidence 568899999943 23334458899999999987643332111 0 0115689999999999653 22
Q ss_pred hchhHHhhhh----------cceeceeeeccccccCCC
Q 031126 137 VCIFCDVFSS----------IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 137 ~~~~~~~~~~----------~~~i~~~~~s~~~~~~~~ 164 (165)
.......+.. .+..+++.+||++|.+++
T Consensus 235 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~ 272 (355)
T 3p32_A 235 ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLA 272 (355)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHH
T ss_pred HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHH
Confidence 2222222222 124578999999998753
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=1.5e-13 Score=110.10 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=85.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCC-CCceeee----------------------------------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGAD---------------------------------------- 44 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~---------------------------------------- 44 (165)
....+|+|+|.+++|||||+|+|++..+.+.. ...+...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45679999999999999999999998762211 1111000
Q ss_pred ----------EEEEEEEECCeEEEEEEEeCCCccc-------------cccchhhcc-ccccEEEEEEeCCChhhHHHHH
Q 031126 45 ----------FLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNSMKSFDNLN 100 (165)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~ 100 (165)
.....+... ....+.|+||||-.. +......++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 001111111 112478999999433 122223333 5789999999998754333332
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHHhhhh--cceeceeeeccccccCCC
Q 031126 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCDVFSS--IITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~~ 164 (165)
.++..+... +.|+|+|+||+|+.+............+.. .-....+..||++|.+..
T Consensus 208 ~ll~~L~~~-------g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 208 KIAKEVDPQ-------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp HHHHHHCTT-------CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred HHHHHHHhc-------CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccch
Confidence 333333221 789999999999976532211111110100 112346778888887753
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=1.1e-14 Score=101.07 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=77.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeee--------------EEEEEEEE----------------CCeE
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--------------FLTKEVQF----------------EDRL 56 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 56 (165)
...+|+++|.+|+|||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 46799999999999999999998652111000000000 00011111 0112
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
..+.+||++|...... .+....+.+++|+|+...... ...+... . +.|+++|+||+|+.......
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~-------~~~~iiv~NK~Dl~~~~~~~ 173 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI---F-------RVADLIVINKVALAEAVGAD 173 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H-------HTCSEEEEECGGGHHHHTCC
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh---h-------hcCCEEEEecccCCcchhhH
Confidence 4578899988511110 111246789999998764321 1111111 1 56889999999996421011
Q ss_pred hchhHHhhhhc-ceeceeeeccccccCCC
Q 031126 137 VCIFCDVFSSI-ITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 137 ~~~~~~~~~~~-~~i~~~~~s~~~~~~~~ 164 (165)
..+..+.+... ....++.+||++|.+..
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 22222222222 13468999999998753
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=98.33 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=50.2
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-- 134 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-- 134 (165)
+.+.++||+|... ......+.+|++++|+|...+.....+. ..+ . ..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i---l------~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIK---RGI---I------EMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC------------------C------CSCSEEEECCCSGGGHHHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhH---HHH---H------hcCCEEEEeeecCCCchhHH
Confidence 4678999999432 1234467899999999998653222111 111 1 558899999999964210
Q ss_pred chhchhHHhhhh------cceeceeeeccccccCC
Q 031126 135 RVVCIFCDVFSS------IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 135 ~~~~~~~~~~~~------~~~i~~~~~s~~~~~~~ 163 (165)
+....+...+.. .+....+.+||++|.+.
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 011122222211 11335788999998775
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=100.61 Aligned_cols=88 Identities=22% Similarity=0.140 Sum_probs=50.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ 71 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 71 (165)
...+|+|+|.+|+|||||+|+|.+........++.+.+.....+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999988654333333333333333333331 2358999999976544
Q ss_pred c-------chhhccccccEEEEEEeCCChh
Q 031126 72 S-------LGVAFYRGADCCVLVYDVNSMK 94 (165)
Q Consensus 72 ~-------~~~~~~~~~~~~i~v~d~~~~~ 94 (165)
. ....+++.+|++++|+|+.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3446678999999999987543
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.36 E-value=8.1e-16 Score=107.27 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN 35 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~ 35 (165)
..++|+|+|.+|+|||||+++|....+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46899999999999999999999775543
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.31 E-value=3.9e-12 Score=90.42 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=41.1
Q ss_pred EEEEEEeCCCccccccchh------hccccccEEEEEEeCCChhhHHHHH---HHHHHHHHHcCCCCCCCCcEEEEEeCC
Q 031126 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLN---NWREEFLIQASPSDPDNFPFVVLGNKI 127 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (165)
+.+.+|||||......... ..+.. +++++++|.....+..... .+........ +.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 4689999999876543221 23455 7888888875432222221 1111111111 67999999999
Q ss_pred CCCCC
Q 031126 128 DVDGG 132 (165)
Q Consensus 128 Dl~~~ 132 (165)
|+...
T Consensus 182 D~~~~ 186 (262)
T 1yrb_A 182 DLLSE 186 (262)
T ss_dssp GGCCH
T ss_pred ccccc
Confidence 99764
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=4.4e-13 Score=99.13 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=52.0
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
+.+.+|||||...... .....+|++++|+|.........+.. .. . +.|.++|+||+|+... ..
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~-------~~p~ivv~NK~Dl~~~--~~ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M-------EVADLIVINKDDGDNH--TN 211 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H-------HHCSEEEECCCCTTCH--HH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h-------cccCEEEEECCCCCCh--HH
Confidence 5689999999654332 24588999999999976432211110 00 0 4588999999999753 22
Q ss_pred hc----hhHHhhhh------cceeceeeeccccccCC
Q 031126 137 VC----IFCDVFSS------IITLSHTHTHGHTNTHS 163 (165)
Q Consensus 137 ~~----~~~~~~~~------~~~i~~~~~s~~~~~~~ 163 (165)
.. +....+.. .+....+.+||++|.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 22 11111111 11345788999998775
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.16 E-value=5.2e-11 Score=86.62 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=66.0
Q ss_pred ccccccchhhccccccEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch---hchhHH
Q 031126 67 QERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV---VCIFCD 142 (165)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~ 142 (165)
++.+..+.+.++.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+|+.+. +. ..+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-------~~~~ilV~NK~DL~~~--~~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-------KVEPVIVFNKIDLLNE--EEKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-------CCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence 5667777778899999999999999886 888888998876542 8899999999999764 21 122222
Q ss_pred hhhhcceeceeeeccccccCCC
Q 031126 143 VFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 143 ~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
.+.. ....++.+||++|.+++
T Consensus 137 ~~~~-~g~~~~~~SA~~g~gi~ 157 (302)
T 2yv5_A 137 IYRD-AGYDVLKVSAKTGEGID 157 (302)
T ss_dssp HHHH-TTCEEEECCTTTCTTHH
T ss_pred HHHH-CCCeEEEEECCCCCCHH
Confidence 2222 24578999999998753
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=3.4e-10 Score=84.85 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=57.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER- 69 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~- 69 (165)
...++.|+|++|+|||||+|.|.+... .....++.+.+.....+.+.+. +..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999998765 3333333333333333444431 13578999999432
Q ss_pred ------cccchhhccccccEEEEEEeCCC
Q 031126 70 ------FQSLGVAFYRGADCCVLVYDVNS 92 (165)
Q Consensus 70 ------~~~~~~~~~~~~~~~i~v~d~~~ 92 (165)
........++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445688999999999864
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=5.3e-10 Score=82.45 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=48.9
Q ss_pred EEEEEEeCCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCch
Q 031126 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 136 (165)
..+.++||+|..... ....+.+|.+++++|.......+.+... +. ..+.+++.||+|+.... ..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~~-~~ 211 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDGE-RR 211 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCCH-HH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCch-hH
Confidence 568899999954321 2345789999999998643221111111 10 23557778999975431 11
Q ss_pred h----chhHHhhhhc------ceeceeeeccccccCC
Q 031126 137 V----CIFCDVFSSI------ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 137 ~----~~~~~~~~~~------~~i~~~~~s~~~~~~~ 163 (165)
. .+....+.-. +....+.+||+++.+.
T Consensus 212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH
Confidence 1 1111111111 1235677999988764
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.02 E-value=7.2e-10 Score=75.83 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=58.8
Q ss_pred CccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCC-CCCCcEEEEEeCC-CCCCCCCchhchhHHh
Q 031126 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNKI-DVDGGNSRVVCIFCDV 143 (165)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~-Dl~~~~~~~~~~~~~~ 143 (165)
|+...+..|..||+.+|++|||+|++|++..+ ...-+.++..+..... ..+.|++|++||. |++..-+..+....-.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~ 189 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 189 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC
Confidence 78999999999999999999999999986554 3333334444444332 2488999999995 7865432222222222
Q ss_pred hhhc-ceeceeeeccccccCC
Q 031126 144 FSSI-ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 144 ~~~~-~~i~~~~~s~~~~~~~ 163 (165)
+... .+-.+..|||++|.+.
T Consensus 190 L~~l~R~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 190 LNLLNHPWLVQDTEAETLTGF 210 (227)
T ss_dssp GGGGCSCEEEEEEETTTCTTH
T ss_pred CcCCCCCEEEEEeECCCCcCH
Confidence 2211 3455778999998764
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=4.6e-11 Score=89.15 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC-----C-CCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccch-------h
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK-----K-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------V 75 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~ 75 (165)
.+++++|.+|+|||||+|+|.+. . ......+.++. ......+.. .+.++||||-....... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999876 2 21111222222 222333333 26888999943222111 1
Q ss_pred hcc---ccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 AFY---RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..+ +..+.++++++.........+.. +..... .+.|++++.||.|....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~----~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKG----GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEES----SSEEEEEEECTTSCEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccC----CCceEEEEecCCccccc
Confidence 112 56789999998843211111111 111111 16799999999998653
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=7.6e-10 Score=79.22 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999999999998643
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=5.7e-09 Score=78.87 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCC----CCceeeeEEEEEEEECCeEEEEEEEeCCCccccc------------
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------------ 71 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------ 71 (165)
.++++|+|++|+|||||++.+.+..+.... .+..............+-...++++|++|-....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 467999999999999999999876432111 1111111111111112222368899998843210
Q ss_pred --cch----hhc---------ccc--ccE-EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 72 --SLG----VAF---------YRG--ADC-CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 72 --~~~----~~~---------~~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
..+ ..+ +.. .|+ ++++.|...+.+..++ ++.+.+.. ++|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L~~----~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKLDS----KVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHTCS----CSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHHhh----CCCEEEEEcchhccch
Confidence 000 011 112 233 4456666544333332 23333322 7899999999998764
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=6.9e-11 Score=88.17 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-----CCCCceeeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------- 75 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------- 75 (165)
.+++++|.+|+|||||+|+|.+..... ......+.+.......+... +.++||||-........
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998763211 01111122222233333332 78889999543221111
Q ss_pred hc--cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCC
Q 031126 76 AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (165)
Q Consensus 76 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (165)
.+ .+..+.++++++.........+. .+..... .+.|+++++||.|....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~----~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSG----GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEES----SSEEEEEEECTTSCEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecC----CCceEEEEecCcccccc
Confidence 11 25568888888874321111110 0111111 16799999999998654
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.76 E-value=2.7e-09 Score=82.35 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHh------cCCCC----CCCCCce-----------eeeEEEEEEE-------------
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKATI-----------GADFLTKEVQ------------- 51 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 51 (165)
.....|+|+|.+|+||||+++.|. +.... ..+.+.. +...+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 22210 0000000 0111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-chh---hc--cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcE-EEEE
Q 031126 52 FEDRLFTLQIWDTAGQERFQS-LGV---AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLG 124 (165)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~ 124 (165)
.....+.+.|+||||...... ... .. .-.+|.+++|+|+....... .....+.. ..|+ ++|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVl 247 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIV 247 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEE
Confidence 000225688999999653221 111 11 12689999999998754321 22222322 2364 8899
Q ss_pred eCCCCCCC
Q 031126 125 NKIDVDGG 132 (165)
Q Consensus 125 nK~Dl~~~ 132 (165)
||+|....
T Consensus 248 NK~D~~~~ 255 (504)
T 2j37_W 248 TKLDGHAK 255 (504)
T ss_dssp ECTTSCCC
T ss_pred eCCccccc
Confidence 99999754
No 217
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.75 E-value=4.1e-09 Score=75.45 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=60.7
Q ss_pred CCCccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCC-CCCCCcEEEEEeC-CCCCCCCCchhchhH
Q 031126 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVVLGNK-IDVDGGNSRVVCIFC 141 (165)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK-~Dl~~~~~~~~~~~~ 141 (165)
..||+..+..|..|++.+|++|+|+|++|++.++ ...-+.++..+.... ...+.|++|++|| .|++..-+..+....
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999987654 222222222222111 0127899999997 588664322222222
Q ss_pred Hhhhhc-ceeceeeeccccccCC
Q 031126 142 DVFSSI-ITLSHTHTHGHTNTHS 163 (165)
Q Consensus 142 ~~~~~~-~~i~~~~~s~~~~~~~ 163 (165)
-.+... .+-....|||++|.+.
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL 295 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGF 295 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTH
T ss_pred cCCccCCCcEEEEecccCCCcCH
Confidence 222211 3445777899998764
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.67 E-value=2.2e-08 Score=72.05 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=35.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (165)
...++++++|.||+|||||+|++.+....... ...+.+.....+.... .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 45689999999999999999999977633221 1111111111222222 57899999954
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=1.6e-08 Score=75.44 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=60.9
Q ss_pred CccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc--hhchhHHh
Q 031126 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVCIFCDV 143 (165)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~ 143 (165)
..+.|+.....+.+.++++++|+|+.++. ..|...+.+... ++|+++|+||+|+.+.... ...++.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 35778888888889999999999999853 456666666543 7899999999999764211 12222222
Q ss_pred hhhccee---ceeeeccccccCCC
Q 031126 144 FSSIITL---SHTHTHGHTNTHSN 164 (165)
Q Consensus 144 ~~~~~~i---~~~~~s~~~~~~~~ 164 (165)
+...... .++.+||++|.+++
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~ 148 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIA 148 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHH
Confidence 2222222 58899999998753
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.60 E-value=1.5e-08 Score=72.18 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (165)
++++++|.+|+|||||+|++.+...... .+..+.+.....+.... .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 5899999999999999999997765321 11112111111222222 5789999996543
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.45 E-value=4.4e-08 Score=73.06 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=59.4
Q ss_pred CccccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chhchhHHh
Q 031126 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVVCIFCDV 143 (165)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~ 143 (165)
.++.|+.....+++.++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.+... ....++...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 478888888888899999999999998763 44555555443 779999999999976421 112222222
Q ss_pred hhhcce---eceeeeccccccCCC
Q 031126 144 FSSIIT---LSHTHTHGHTNTHSN 164 (165)
Q Consensus 144 ~~~~~~---i~~~~~s~~~~~~~~ 164 (165)
+..... ..++.+||++|.+.+
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~ 150 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMA 150 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHH
Confidence 222222 257899999988753
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.43 E-value=1.2e-06 Score=66.07 Aligned_cols=110 Identities=16% Similarity=0.286 Sum_probs=57.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCce-eeeE--EEEEEEECCeEEEEEEEeCCCccccccchhhc-----cc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR 79 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 79 (165)
...++|+|++|+|||||+|.+.+...+....-.. +.+. ...... ....-.+.+||++|-.........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4589999999999999999998743221111111 1110 000111 1111147889999843222112222 23
Q ss_pred cccEEEEEEeCC--ChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 80 GADCCVLVYDVN--SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 80 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
..+..++ ++.. .+.... + ...+... ++|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~kqrv~-l---a~aL~~~-------~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDID-I---AKAISMM-------KKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCCHHHHH-H---HHHHHHT-------TCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCccHHHHH-H---HHHHHhc-------CCCeEEEEecCccc
Confidence 3455554 6765 322221 2 2222222 67999999999973
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=2.1e-07 Score=73.15 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=39.2
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCC---ceeeeEEEEEEEE-CCeEEEEEEEeCCCccc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA---TIGADFLTKEVQF-EDRLFTLQIWDTAGQER 69 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~ 69 (165)
..+..+|+|+|.||+|||||+|+|.+....-.... ..+...+...... ......+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34678999999999999999999998763211111 1111121111111 11224678899999654
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.35 E-value=3.6e-07 Score=65.72 Aligned_cols=91 Identities=16% Similarity=0.026 Sum_probs=56.2
Q ss_pred EEeCCCcc-ccccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhch
Q 031126 61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCI 139 (165)
Q Consensus 61 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (165)
+-..||+. .........++.+|+++.|+|+.++.+... ..+.+... ++|+++|+||+|+.+. .....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l~-----~kp~ilVlNK~DL~~~--~~~~~ 70 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDILK-----NKPRIMLLNKADKADA--AVTQQ 70 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHCS-----SSCEEEEEECGGGSCH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHHC-----CCCEEEEEECcccCCH--HHHHH
Confidence 34678875 344455667899999999999999877642 11222222 7899999999999864 33333
Q ss_pred hHHhhhhcceeceeeeccccccCCC
Q 031126 140 FCDVFSSIITLSHTHTHGHTNTHSN 164 (165)
Q Consensus 140 ~~~~~~~~~~i~~~~~s~~~~~~~~ 164 (165)
+.+.+.+ ....++..||+++.+.+
T Consensus 71 ~~~~~~~-~g~~~i~iSA~~~~gi~ 94 (282)
T 1puj_A 71 WKEHFEN-QGIRSLSINSVNGQGLN 94 (282)
T ss_dssp HHHHHHT-TTCCEEECCTTTCTTGG
T ss_pred HHHHHHh-cCCcEEEEECCCcccHH
Confidence 3333322 23467888998887654
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.27 E-value=2.1e-06 Score=68.01 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..++|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 349999999999999999998764
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.25 E-value=1.6e-06 Score=65.88 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=38.7
Q ss_pred EEEEEEeCCCccccccchh------hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCC-c-EEEEEeCCC
Q 031126 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-P-FVVLGNKID 128 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D 128 (165)
+.+.++||||......... ..+..+|.+++|+|+..... .......+.. .. | ..+|.||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~--------~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE--------AVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT--------TSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh--------cccCCeEEEEeCCC
Confidence 4578899999553211111 11235899999999876532 2222222221 34 5 789999999
Q ss_pred CCCC
Q 031126 129 VDGG 132 (165)
Q Consensus 129 l~~~ 132 (165)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8643
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.14 E-value=2.3e-06 Score=65.05 Aligned_cols=66 Identities=18% Similarity=0.051 Sum_probs=39.6
Q ss_pred EEEEEEeCCCccccccchh------hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (165)
+.+.++||+|......... .....+|.+++|+|+........ ....+... -.+..+|.||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEECCCCc
Confidence 5678899999433221111 11235789999999987543322 23333322 23567999999997
Q ss_pred CC
Q 031126 131 GG 132 (165)
Q Consensus 131 ~~ 132 (165)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.08 E-value=1.4e-07 Score=72.55 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=56.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCCCCCceeeeEEEEEEEECCeEEEEEEEeCCCccc--cccch--------h
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V 75 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 75 (165)
.....|+++|.+||||||+.++|...-... ...+...+.........+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999987542100 011110000000000011112345789888733 23222 3
Q ss_pred hccccccEEEEEEeCCChhhHHHHHHHHHHHHHH
Q 031126 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ 109 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (165)
.++...++.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 445557888999999986 444555565555443
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.84 E-value=7.4e-06 Score=62.18 Aligned_cols=66 Identities=20% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEEEEEeCCCccc--cccc----hhhc--cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCC
Q 031126 57 FTLQIWDTAGQER--FQSL----GVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (165)
Q Consensus 57 ~~~~~~D~~g~~~--~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (165)
+.+.++||||... .... .... .-.++.+++|+|+....... .....+... -.+..+|.||.|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH-------CSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc-------cCCcEEEEeccc
Confidence 4577889999543 1111 1111 12458999999998654332 223444333 235789999999
Q ss_pred CCCC
Q 031126 129 VDGG 132 (165)
Q Consensus 129 l~~~ 132 (165)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8653
No 230
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.81 E-value=2.2e-05 Score=59.80 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+..-|.|+|.+++|||+|+|+|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34567789999999999999999985
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=3.8e-05 Score=55.59 Aligned_cols=64 Identities=20% Similarity=0.104 Sum_probs=38.7
Q ss_pred EEEEEEeCCCccc--ccc-chh-----hccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCC
Q 031126 57 FTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKI 127 (165)
Q Consensus 57 ~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 127 (165)
+.+.++||||... ... ... .....+|.+++|+|+.... +.......+.. ..+ ..+|.||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence 4578899999765 211 111 1234689999999987532 22222333322 234 67899999
Q ss_pred CCCC
Q 031126 128 DVDG 131 (165)
Q Consensus 128 Dl~~ 131 (165)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9864
No 232
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.71 E-value=2.1e-05 Score=52.66 Aligned_cols=23 Identities=48% Similarity=0.920 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+++|+|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988754
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.70 E-value=2.5e-05 Score=51.72 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
|..+......++++|++||||||+++.+..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444445567899999999999999998864
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.64 E-value=0.00014 Score=52.77 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=49.7
Q ss_pred hccccccEEEEEEeCCChhhH-HHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCC--chhchhHHhhhhcceece
Q 031126 76 AFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--RVVCIFCDVFSSIITLSH 152 (165)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~i~~ 152 (165)
..+.++|.+++|+|+..+..- ..+.+++...... ++|.++|.||+|+.+... .......+.+... ....
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~-------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~~v 153 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GYDV 153 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TCCE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CCeE
Confidence 456789999999999976443 3344443322222 789999999999987621 1123344444322 2356
Q ss_pred eeeccccccCCC
Q 031126 153 THTHGHTNTHSN 164 (165)
Q Consensus 153 ~~~s~~~~~~~~ 164 (165)
+..|++++.+.+
T Consensus 154 ~~~sa~~~~g~~ 165 (307)
T 1t9h_A 154 YLTSSKDQDSLA 165 (307)
T ss_dssp EECCHHHHTTCT
T ss_pred EEEecCCCCCHH
Confidence 777777766543
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=3e-05 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--++|+|++|||||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999764
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.56 E-value=4.6e-05 Score=51.10 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-.++++|++||||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999765
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.56 E-value=4e-05 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..++|+|++|||||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.56 E-value=2.1e-05 Score=55.89 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=49.3
Q ss_pred CCCcccc-ccchhhccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCchhchhHH
Q 031126 64 TAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCIFCD 142 (165)
Q Consensus 64 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (165)
.||+... .......++.+|++++|+|+.++.+.... .+. .. ++|.++|+||+|+.+. .....+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~--~~~~~~~~ 69 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE--KTTKKWVE 69 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH--HHHHHHHH
Confidence 4665432 23445667899999999999988665431 111 11 6699999999999864 33333333
Q ss_pred hhhhcceeceeeeccccccCC
Q 031126 143 VFSSIITLSHTHTHGHTNTHS 163 (165)
Q Consensus 143 ~~~~~~~i~~~~~s~~~~~~~ 163 (165)
.+.+ ....+ ..|++++.+.
T Consensus 70 ~~~~-~g~~v-~iSa~~~~gi 88 (262)
T 3cnl_A 70 FFKK-QGKRV-ITTHKGEPRK 88 (262)
T ss_dssp HHHH-TTCCE-EECCTTSCHH
T ss_pred HHHH-cCCeE-EEECCCCcCH
Confidence 3332 22345 7788877653
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.49 E-value=7.3e-05 Score=50.91 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCcccceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 1 m~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
|.........|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333344567899999999999999999864
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.48 E-value=5.5e-05 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 031126 9 LKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (165)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999643
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.47 E-value=6.4e-05 Score=50.93 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--++|+|++|||||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999764
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00073 Score=51.38 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=37.9
Q ss_pred EEEEEEeCCCccccccchhh------ccccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCc-EEEEEeCCCC
Q 031126 57 FTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV 129 (165)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (165)
+.+.++||||.......... ....++.+++|+|+...... ......+.. ..+ .-+|.||.|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~--------~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE--------ALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH--------HSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc--------cCCCeEEEEecCCC
Confidence 56788899996543221111 12357899999998754322 222233322 223 3479999998
Q ss_pred CCC
Q 031126 130 DGG 132 (165)
Q Consensus 130 ~~~ 132 (165)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=6.6e-05 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++|+|++|||||||++.+...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999753
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.44 E-value=6.9e-05 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998754
No 245
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.44 E-value=8.1e-05 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=8.8e-05 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.....++|+|++|||||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998764
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.42 E-value=7.7e-05 Score=51.43 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|||||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35799999999999999998764
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.41 E-value=8.3e-05 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
--++|+|++|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999987643
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=8.4e-05 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-|+|+|++|+|||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999854
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=0.00011 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
..-|+|+|++||||||+++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998653
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.36 E-value=0.00011 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999753
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.34 E-value=0.00012 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00014 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00013 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.....++|+|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 255
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.33 E-value=0.00035 Score=44.75 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999988654
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.33 E-value=0.00013 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998764
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=0.00012 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=0.00012 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999997643
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00014 Score=47.69 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 031126 9 LKVIILGDSGVGKTSLMNQY 28 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l 28 (165)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.31 E-value=0.00014 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
...++|+|++||||||+++.|....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999997654
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.30 E-value=0.00014 Score=47.73 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.28 E-value=0.00014 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00015 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
--++++|+.|||||||++.+.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999987654
No 264
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00018 Score=48.57 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.0
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3445678999999999999999999865
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.27 E-value=0.00016 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~ 29 (165)
+..++|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.0002 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00022 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00016 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 269
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00015 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997653
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.26 E-value=0.00015 Score=53.66 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~ 33 (165)
.++|+|++|+|||||+|.|.....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997543
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.26 E-value=0.00017 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....++|+|++||||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.25 E-value=0.00017 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00019 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00022 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 275
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.21 E-value=0.00071 Score=43.41 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999997653
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.00019 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.21 E-value=0.0002 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.20 E-value=0.00019 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999764
No 279
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.20 E-value=0.00023 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+..|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.20 E-value=0.00019 Score=50.92 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.++|+|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999875
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.20 E-value=0.00021 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.20 E-value=0.00019 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++|+|+.|||||||++.+.+--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.19 E-value=0.00022 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.19 E-value=0.00024 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00023 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.0002 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997653
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00022 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+...|+|+|.+||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.18 E-value=0.00025 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+.+|+|+|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.00019 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988653
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.18 E-value=0.00022 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997653
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=8.2e-05 Score=49.98 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+...|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 292
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.18 E-value=0.00021 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998653
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.00032 Score=47.66 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.....|+|+|.+||||||+++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999764
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00023 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.++|+|++|||||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999998864
No 295
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.16 E-value=0.00022 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997653
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00024 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-++|+|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.16 E-value=0.00028 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....|+|+|++||||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.16 E-value=0.00023 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+--
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997653
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.15 E-value=0.00026 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999764
No 300
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.00025 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997653
No 301
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.15 E-value=0.00025 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00029 Score=47.08 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+..|+|+|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00026 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.00022 Score=48.17 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.++|+|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998865
No 305
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=0.00029 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~ 33 (165)
.++++|++|||||||+|.+.....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00024 Score=47.18 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....|+++|.+||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.14 E-value=0.00033 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.14 E-value=0.00027 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 309
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.13 E-value=0.00025 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999997653
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.13 E-value=0.00026 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 311
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.13 E-value=0.00026 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.746 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 031126 9 LKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (165)
--++|+|++|||||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999877
No 312
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.12 E-value=0.0011 Score=49.09 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=46.2
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCCCCc-hhchhHHhhhhcceeceeeec
Q 031126 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-VVCIFCDVFSSIITLSHTHTH 156 (165)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~i~~~~~s 156 (165)
..++|.+++|....-..+...+.+++...... ++|.++|+||+|+.+.... ....+...+.. .....+..|
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~~v~~~S 199 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGYRVLMVS 199 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTCCEEECB
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCCcEEEEe
Confidence 56789999886654323334455554433333 7788999999999875211 12233333332 234577888
Q ss_pred cccccCC
Q 031126 157 GHTNTHS 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
++++.+.
T Consensus 200 a~~~~gl 206 (358)
T 2rcn_A 200 SHTQDGL 206 (358)
T ss_dssp TTTTBTH
T ss_pred cCCCcCH
Confidence 8877653
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.00032 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00034 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+.|.|+|++||||||+.+.|...
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999763
No 315
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.12 E-value=0.00027 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00035 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+.-|+++|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 317
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.0003 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+|+++|.+||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.12 E-value=0.00026 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.12 E-value=0.00042 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.00022 Score=48.90 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.11 E-value=0.0004 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+...|+++|.+||||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 322
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00026 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 53
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 324
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.11 E-value=0.00027 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+--
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999997653
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.11 E-value=0.0003 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999864
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.10 E-value=0.00029 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 327
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.10 E-value=0.00027 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997653
No 328
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.08 E-value=0.00028 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--++|+|++|||||||++.+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999763
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.07 E-value=0.00036 Score=45.62 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 330
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.07 E-value=0.0016 Score=49.63 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=40.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHh------------------cCCCCC---CCCCceeeeEEEEEE--E-ECCeEEEEE
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYV------------------NKKFSN---QYKATIGADFLTKEV--Q-FEDRLFTLQ 60 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~------------------~~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~~~ 60 (165)
..+..=|.|+|..++|||+|+|.|+ ...|.. ..+.|.|.-.+...+ . .++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3456667799999999999999654 123321 112233433332222 1 256678899
Q ss_pred EEeCCCcccc
Q 031126 61 IWDTAGQERF 70 (165)
Q Consensus 61 ~~D~~g~~~~ 70 (165)
++||.|..+.
T Consensus 144 llDTEG~~d~ 153 (457)
T 4ido_A 144 LMDTQGTFDS 153 (457)
T ss_dssp EEEECCBTCT
T ss_pred EEeccCCCCc
Confidence 9999995544
No 331
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.07 E-value=0.00033 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+..+|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.07 E-value=0.00035 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999997643
No 333
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.00024 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00035 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...+|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.06 E-value=0.00019 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=15.3
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 031126 9 LKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (165)
--++|+|++||||||+++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 336
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.06 E-value=9.3e-05 Score=53.75 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|++|+|||||+|.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998653
No 337
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.00039 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988654
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00048 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 339
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.05 E-value=0.00032 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999997653
No 340
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.00033 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 341
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.04 E-value=0.0017 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....++|.|++|+|||++++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00033 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00015 Score=48.12 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|||||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 344
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00043 Score=50.36 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....-+.|+|++|||||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999998865
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00053 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.3
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHh
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~ 29 (165)
.....-|+|+|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998764
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.01 E-value=0.00036 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999865
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.00 E-value=0.0003 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-+++|+|++|||||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998754
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00029 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00033 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+..|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 350
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.99 E-value=0.00044 Score=49.08 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.98 E-value=0.00046 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.00039 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.98 E-value=0.00048 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..-|.|+|+.|||||||++.|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998865
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.97 E-value=0.00042 Score=49.46 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 355
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.97 E-value=0.00051 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.00039 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 357
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.95 E-value=0.00053 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHh
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~ 29 (165)
.+..||+++|.++||||||++.+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998763
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.94 E-value=0.00061 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..++-+.|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999988753
No 359
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.94 E-value=0.00028 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|||||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999998754
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.93 E-value=0.00049 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999754
No 361
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.93 E-value=0.0005 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998654
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00051 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.92 E-value=0.00057 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~ 29 (165)
...|+|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.92 E-value=0.0005 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 365
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.92 E-value=0.00051 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998654
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.92 E-value=0.00057 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 367
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.00052 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999764
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.00058 Score=46.27 Aligned_cols=24 Identities=42% Similarity=0.313 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...-+.|+|.+|||||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 369
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00051 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998864
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.91 E-value=0.00049 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|||||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999864
No 371
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.90 E-value=0.00066 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..-+.|+|.+|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.90 E-value=0.00053 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998653
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.0008 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-|+|+|+|||||+|...+|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999998864
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.00054 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998654
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.90 E-value=0.00051 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|++|||||||++.+.+--
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998653
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00074 Score=48.32 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+..|+|+|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999863
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.88 E-value=0.00067 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..++.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.00073 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.87 E-value=0.00075 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00071 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-+|+|+|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.0006 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.87 E-value=0.00059 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.++|+|++||||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.86 E-value=0.0006 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998653
No 384
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.86 E-value=0.00059 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998654
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.86 E-value=0.00075 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....-|.|+|++|||||||++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00066 Score=44.55 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 387
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.83 E-value=0.00052 Score=45.29 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...++|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988653
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.00074 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.++.|+|.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998863
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00022 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.82 E-value=0.00079 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..-.++|+|++||||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346789999999999999998863
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.81 E-value=0.00071 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.81 E-value=0.00065 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|++|||||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998764
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.80 E-value=0.00075 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.+|+|+.|||||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999854
No 394
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.78 E-value=0.00082 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....++|.|++|+|||+|+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988653
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.78 E-value=0.00073 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|++|+|||||++.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999764
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.00071 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998753
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.00085 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||++++.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.00079 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
--++|+|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998873
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.77 E-value=0.00072 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-.++|+|++|||||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999997643
No 400
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.75 E-value=0.00077 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998754
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.73 E-value=0.0005 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998654
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00088 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.--++++|+.||||||++..+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 403
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.001 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.70 E-value=0.001 Score=46.11 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+..-|+|.|..||||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998764
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.70 E-value=0.0013 Score=45.60 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...-|+|.|.+||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998653
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.69 E-value=0.0012 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...|+|+|.+||||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
No 407
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.66 E-value=0.0013 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+.--++++|++||||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.00097 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.|+|+|++||||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 409
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0012 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
--++|+|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999976
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.62 E-value=0.0011 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 411
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.62 E-value=0.0016 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...|.++|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999988754
No 412
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.61 E-value=0.0014 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 413
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.61 E-value=0.0016 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988754
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.60 E-value=0.0005 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 415
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.60 E-value=0.0017 Score=46.04 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.0
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999999764
No 416
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.59 E-value=0.0014 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
....+++|.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999986643
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.59 E-value=0.00098 Score=45.52 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
-.+++.|+||+|||+++.++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999888764
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.58 E-value=0.0014 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999753
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0013 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--++|+|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999999998863
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0013 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999754
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.57 E-value=0.0015 Score=42.17 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 031126 11 VIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (165)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999875
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.56 E-value=0.0015 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+.-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467888899999999999998753
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.54 E-value=0.0015 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0012 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++|+|+.|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999998753
No 425
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.0089 Score=43.27 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
+++.|++|+|||+++..+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455667999999999999654
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.53 E-value=0.0014 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.++|.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0014 Score=44.27 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 428
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.52 E-value=0.0015 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-++|+|..|||||||++.+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456789999999999999999865
No 429
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.49 E-value=0.0016 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=++.|+|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 430
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0015 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.--++++|+.||||||++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999998864
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.48 E-value=0.0015 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.--++|+|.+|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999998864
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.0021 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 433
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.46 E-value=0.002 Score=43.79 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.-|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998764
No 434
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.45 E-value=0.0015 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=18.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.+..-|+|.|.+||||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557799999999999999998864
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=44.79 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.43 E-value=0.0018 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456999999999999999999764
No 437
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.42 E-value=0.0017 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999874
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.39 E-value=0.0023 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-.+++.|+|.|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998864
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.38 E-value=0.0019 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|||||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 36899999999999999998764
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.37 E-value=0.002 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=+++|+|++|||||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999998764
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.36 E-value=0.0019 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0022 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=.++++|+.|||||||++.+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.0015 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988653
No 444
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.35 E-value=0.0019 Score=46.87 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...++|.|++|+|||+|++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998753
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.35 E-value=0.0021 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998874
No 446
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.34 E-value=0.0022 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|||||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.34 E-value=0.0027 Score=42.19 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.=++|.|++|+||||+.-.|..+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998765
No 448
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.0015 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
+++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.31 E-value=0.0023 Score=47.55 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 031126 11 VIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (165)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999876
No 450
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.31 E-value=0.0019 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.31 E-value=0.0029 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..-|+++|.+||||||+.+++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998753
No 452
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.30 E-value=0.0027 Score=42.39 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 031126 11 VIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (165)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999855
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.29 E-value=0.0027 Score=42.81 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0025 Score=44.08 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 031126 10 KVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (165)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999777653
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.0023 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-.++|.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 456
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.25 E-value=0.0028 Score=46.13 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999754
No 457
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0027 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+..|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.25 E-value=0.002 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.24 E-value=0.0027 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0024 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=-+.++|+.|||||||++.+.+--
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998753
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.23 E-value=0.0022 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|||||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999998754
No 462
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.0022 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.++++.|++|+||||+++.+...
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998754
No 463
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.003 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999999764
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.18 E-value=0.0018 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998764
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0028 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999998643
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.17 E-value=0.0039 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+.-|+|+|++|||||+|...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345789999999999999999754
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.17 E-value=0.0035 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...|+|.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 468
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.16 E-value=0.0038 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998865
No 469
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0033 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
+.-+++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
No 470
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.13 E-value=0.004 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...+|+++|++|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999986653
No 471
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.12 E-value=0.0019 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|||||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999988754
No 472
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.12 E-value=0.0039 Score=46.92 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHh
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~ 29 (165)
..+.+|++++|...|||||+++.+.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3567999999999999999998763
No 473
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0035 Score=47.66 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.+.-|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999753
No 474
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.09 E-value=0.0033 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++++|+||+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988643
No 475
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.09 E-value=0.0034 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..++|.|++|+|||+++..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.0033 Score=49.15 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.0025 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
-.++++|++|||||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988754
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0027 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....++|.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998753
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.05 E-value=0.0026 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.....++|+|.+|||||||++.|...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 34578999999999999999988653
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.05 E-value=0.0049 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 481
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.05 E-value=0.0037 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
=.++|+|+.|+|||||++.+.+--
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999998643
No 482
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.05 E-value=0.0035 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++|+|++|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998754
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.04 E-value=0.0015 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999998753
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.04 E-value=0.0036 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999998764
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.04 E-value=0.004 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
...+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 486
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.04 E-value=0.0048 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.6
Q ss_pred cceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..+..-|+|.|.+||||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998864
No 487
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.03 E-value=0.0037 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....+++.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.0037 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (165)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
No 489
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.01 E-value=0.0044 Score=42.08 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 031126 11 VIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (165)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 490
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0043 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 031126 10 KVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
.++|+|+.|||||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 491
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.98 E-value=0.0042 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~ 32 (165)
...++|.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999998653
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0036 Score=42.70 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 031126 9 LKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (165)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.98 E-value=0.0045 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 031126 9 LKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
.-|+|+|++|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999754
No 494
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.98 E-value=0.005 Score=47.75 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=23.8
Q ss_pred cccceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
++......|.++|.+||||||+.+.|...
T Consensus 390 ~~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 390 PRPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cccccceEEEecccCCCCHHHHHHHHHHH
Confidence 34456689999999999999999988643
No 495
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0024 Score=46.59 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....+++|.|+||+|||++++.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999988753
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.97 E-value=0.0042 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 031126 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
....++|.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.96 E-value=0.0037 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...+++.|++|+|||+++..+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 498
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.96 E-value=0.004 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 031126 8 LLKVIILGDSGVGKTSLMNQYV 29 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~ 29 (165)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998875
No 499
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.95 E-value=0.0042 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 031126 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (165)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (165)
...|++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999998754
No 500
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.95 E-value=0.0058 Score=48.11 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.7
Q ss_pred ccceeeEEEEEcCCCCChHHHHHHHhc
Q 031126 4 RRRTLLKVIILGDSGVGKTSLMNQYVN 30 (165)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (165)
+......|+|.|.+||||||+.+.|..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHH
Confidence 445568899999999999999998854
Done!