Query 031127
Match_columns 165
No_of_seqs 131 out of 682
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 3.2E-64 6.9E-69 397.4 18.9 157 1-162 1-160 (178)
2 KOG3182 Predicted cation trans 100.0 7.5E-64 1.6E-68 394.4 16.3 158 1-163 10-168 (212)
3 COG3703 ChaC Uncharacterized p 100.0 9.4E-57 2E-61 353.2 18.4 153 1-164 12-168 (190)
4 PHA03014 hypothetical protein; 99.9 2.2E-20 4.7E-25 145.8 15.2 141 1-160 3-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 1.1E-17 2.5E-22 117.8 9.3 91 3-114 1-99 (99)
6 KOG4059 Uncharacterized conser 99.7 4.5E-17 9.7E-22 125.5 4.9 134 2-156 25-167 (193)
7 PF13772 AIG2_2: AIG2-like fam 99.2 2.3E-11 4.9E-16 84.8 6.7 79 59-154 1-83 (83)
8 PF06094 AIG2: AIG2-like famil 99.1 6.1E-10 1.3E-14 79.1 10.1 97 3-115 1-102 (102)
9 COG2105 Uncharacterized conser 98.1 3.5E-05 7.7E-10 57.5 9.3 91 3-117 4-102 (120)
10 KOG4450 Uncharacterized conser 88.1 0.8 1.7E-05 35.7 4.0 101 2-114 8-122 (168)
11 TIGR00290 MJ0570_dom MJ0570-re 59.4 40 0.00087 27.6 6.6 41 124-164 40-87 (223)
12 PF13812 PPR_3: Pentatricopept 51.4 20 0.00043 19.0 2.6 29 136-165 6-34 (34)
13 COG4762 Uncharacterized protei 49.9 8.2 0.00018 30.2 1.0 9 1-9 100-108 (168)
14 KOG2631 Class II aldolase/addu 46.8 16 0.00036 30.0 2.3 19 147-165 209-227 (238)
15 KOG4311 Histidinol dehydrogena 46.5 33 0.00071 29.4 4.1 75 43-125 146-230 (359)
16 PF07107 WI12: Wound-induced p 31.2 33 0.00071 25.2 1.6 26 27-52 84-109 (109)
17 PF08480 Disaggr_assoc: Disagg 26.8 30 0.00064 28.0 0.8 8 1-8 19-26 (198)
18 PLN02863 UDP-glucoronosyl/UDP- 25.0 99 0.0022 28.0 3.9 34 131-164 442-475 (477)
19 PF03527 RHS: RHS protein; In 23.8 36 0.00078 20.5 0.6 28 36-69 5-32 (41)
20 COG5452 Uncharacterized conser 23.8 1E+02 0.0023 24.2 3.3 26 129-163 67-92 (180)
21 smart00755 Grip golgin-97, Ran 22.0 60 0.0013 20.0 1.4 11 145-155 1-11 (46)
22 PF15409 PH_8: Pleckstrin homo 20.3 46 0.001 23.4 0.7 15 21-35 7-21 (89)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=3.2e-64 Score=397.40 Aligned_cols=157 Identities=50% Similarity=1.010 Sum_probs=147.1
Q ss_pred CeEEEecccccCCCCCcceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHHHHHH
Q 031127 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~l~~L 80 (165)
|||||||||||||.|++.++++|+|+||+|+|||.|++|||||++||+|+||++.+++.||||+|+|+++++++ +|++|
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~~~~~~-~l~~L 79 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPEEDAEE-VLEYL 79 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecCcCHHH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999988899999999999977764 99999
Q ss_pred HHhhh-C-CcccceEEEEe-CCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 031127 81 EVREK-Q-YDKKAYLDLFT-DPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKA 157 (165)
Q Consensus 81 d~RE~-~-Y~~~~~v~v~~-~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~ 157 (165)
|.||| + |.+. ++++++ .++.+++..++|++||++++ ||+|+|++|++++|++|++|+|+||+|.|||++|+++
T Consensus 80 ~~RE~~~Gy~~~-~v~~~~~~~~~~~~~~~~al~yv~~~~---n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~ 155 (178)
T PF04752_consen 80 DEREMIGGYTRH-WVPFYPEVDTDSGPVIVEALVYVADPD---NPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEA 155 (178)
T ss_pred hhcccccccceE-EEEEEEeccCCCCceEEEEEEEEecCC---CccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHH
Confidence 99999 5 8887 999987 33344555579999999998 9999999999999999999999999999999999999
Q ss_pred HHHcC
Q 031127 158 LLELG 162 (165)
Q Consensus 158 l~~lg 162 (165)
|++||
T Consensus 156 L~~~g 160 (178)
T PF04752_consen 156 LRELG 160 (178)
T ss_pred HHHhC
Confidence 99999
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-64 Score=394.44 Aligned_cols=158 Identities=55% Similarity=1.051 Sum_probs=150.2
Q ss_pred CeEEEecccccCCCCCcceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHHHHHH
Q 031127 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~l~~L 80 (165)
|||||||||||||+|+|+++++|+|+||+|||||+|+||||||+.||||+||++..++.||||+|+|+++.+- +++++|
T Consensus 10 lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g~~~~-~~l~yl 88 (212)
T KOG3182|consen 10 LWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRGKQAS-EVLEYL 88 (212)
T ss_pred EEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecchhHH-HHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999997554 599999
Q ss_pred HHhhhC-CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Q 031127 81 EVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALL 159 (165)
Q Consensus 81 d~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~l~ 159 (165)
+.||.+ |..+ .|+|++.+....+.++.|+|||+|++ |++|+|+.|+++||++|++|.||||+|.|||++|+++|+
T Consensus 89 ~~RE~nGY~~~-~v~f~~e~~~~~p~v~~vlvyvaTp~---N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~am~ 164 (212)
T KOG3182|consen 89 NVRELNGYTTH-EVEFYPEDAAELPEVLGVLVYVATPD---NEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKAMR 164 (212)
T ss_pred HHHhhcCccee-eeeeeccCCCCCCceEEEEEEEecCC---CccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 999988 7776 99999987777778899999999999 999999999999999999999999999999999999999
Q ss_pred HcCC
Q 031127 160 ELGT 163 (165)
Q Consensus 160 ~lgi 163 (165)
+|++
T Consensus 165 ~l~p 168 (212)
T KOG3182|consen 165 QLFP 168 (212)
T ss_pred HcCC
Confidence 9965
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-57 Score=353.21 Aligned_cols=153 Identities=39% Similarity=0.707 Sum_probs=143.1
Q ss_pred CeEEEecccccCCCCCcceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHHHHHH
Q 031127 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~l~~L 80 (165)
+||||||||||||+|++.++++|+++||+|+||+.|++||||+++||+|++|+ .||+|+||+||||++++++ ++++|
T Consensus 12 ~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~--~GGsc~GvafRip~~~~~~-v~~yL 88 (190)
T COG3703 12 LWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLD--RGGSCEGVAYRIPEAHAEE-VLEYL 88 (190)
T ss_pred eEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEee--CCCcEEEEEEEcCchhhHH-HHHHH
Confidence 69999999999999999999999999999999999999999999999999999 7999999999999988876 99999
Q ss_pred HHhhhC----CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHH
Q 031127 81 EVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEK 156 (165)
Q Consensus 81 d~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~ 156 (165)
++||++ |.++ ++++... ++..++|++||++++ |++|.|+++.+++|.+|+.|+|+||+|.|||++|.+
T Consensus 89 ~~RE~~~t~~y~p~-~l~v~~~----~g~~~~al~~v~~~~---h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~ 160 (190)
T COG3703 89 REREMNYTLVYVPR-WLPVELE----GGRRVNALVFVGDRK---HPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQ 160 (190)
T ss_pred HHhhccccceeeeE-EEEEecC----CCcEEEEEEEEecCC---ccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 999996 5555 6666553 346799999999998 999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 031127 157 ALLELGTF 164 (165)
Q Consensus 157 ~l~~lgi~ 164 (165)
+|++|||.
T Consensus 161 hL~~~gi~ 168 (190)
T COG3703 161 HLRKLGIR 168 (190)
T ss_pred HHHhcCCc
Confidence 99999985
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.86 E-value=2.2e-20 Score=145.80 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=112.2
Q ss_pred CeEEEecccccCCCC--------CcceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCc
Q 031127 1 MWVFGYGSLIWKAGF--------HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f--------~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~ 72 (165)
.|+|||||+|+...+ .......|.|.||.-+|.. |. ...|.++||+|++|+.||||+|+|+.
T Consensus 3 ~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f-~~------~~~Ga~ATIvp~~g~~V~Gvlw~i~~--- 72 (163)
T PHA03014 3 KYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCY-SK------EIDSVIASIKKDDNGIVFGILYEFNE--- 72 (163)
T ss_pred eEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEec-cC------CcCCceEEEEECCCCEEEEEEEEeCH---
Confidence 489999999977654 3445678999977666652 22 34677899999999999999999998
Q ss_pred hHHHHHHHHHhhhC----CcccceEEEEeCCCCCCCceEEEEEE--EEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 031127 73 KEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVY--IASANKQLNSNYLGPASLEDIAKQIIQAEGPSGP 146 (165)
Q Consensus 73 ~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Y--v~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~ 146 (165)
..++.||+.|+. |.+. .|+|.+.++ ...+.|++| +.++. ++.+....|.+++.++|..++..+|.
T Consensus 73 --~dl~~LD~~EGvp~~~Y~~~-~v~V~~~~~---~~~~~a~~Y~~~~~~~---~~~~~~~~Ps~~Yl~~I~~Ga~e~Gl 143 (163)
T PHA03014 73 --SIMKKFDKQEFIDKNIYKLA-KMNVLDLED---EKIIEAQAYKAILDDD---NNMFYDAPNFNIYKDIIIDALIENNI 143 (163)
T ss_pred --HHHHHHhhhcCCCcCceEEE-EEEEEeCCC---CcEEEEEEEehhcCCC---cccccCCCChHHHHHHHHHHHHHhCC
Confidence 489999999994 7777 899987542 245899999 66664 44334457889999999999999999
Q ss_pred ---cHHHHHHHHHHHHH
Q 031127 147 ---NRDYLFQLEKALLE 160 (165)
Q Consensus 147 ---n~eYl~~l~~~l~~ 160 (165)
+.+|+.+|.+-+.+
T Consensus 144 ~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 144 LDYPLWYIKHINNIFKE 160 (163)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 99999999876654
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.74 E-value=1.1e-17 Score=117.84 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=76.3
Q ss_pred EEEecccccCCCC-----CcceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHHH
Q 031127 3 VFGYGSLIWKAGF-----HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAV 77 (165)
Q Consensus 3 vFgYGSL~w~p~f-----~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~l 77 (165)
||+|||||+.+.+ ......+|+|+||++.|+..+ .+++|++++++.|+|++|+|+. +++
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~~-----~~l 64 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVDP-----EDL 64 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEECH-----HHH
Confidence 6999999999988 456788999999999999865 3457788888999999999994 489
Q ss_pred HHHHHhhhC---CcccceEEEEeCCCCCCCceEEEEEEEE
Q 031127 78 TYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIA 114 (165)
Q Consensus 78 ~~Ld~RE~~---Y~~~~~v~v~~~~~~~~~~~~~al~Yv~ 114 (165)
+.||.+|+. |.+. .+++...+. ..++|++|+.
T Consensus 65 ~~LD~~E~~~~~Y~r~-~v~v~~~~~----~~~~a~~Y~~ 99 (99)
T cd06661 65 ARLDAFEGVPGGYRRE-EVEVELEDG----EGVEAWVYVA 99 (99)
T ss_pred HhhhhhcCCCCCeEEE-EEEEEeCCC----CEEEEEEEeC
Confidence 999999994 7776 899988642 3489999984
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.5e-17 Score=125.52 Aligned_cols=134 Identities=19% Similarity=0.318 Sum_probs=111.8
Q ss_pred eEEEecccccCCCCCcc-----eeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHH
Q 031127 2 WVFGYGSLIWKAGFHFD-----ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (165)
Q Consensus 2 wvFgYGSL~w~p~f~~~-----~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~ 76 (165)
.+|||||+|.-.++++. .-++|.|..|+..|...|..| -|-|+||.+.+|+.|||++|+++.+ .
T Consensus 25 lYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~s-----n 93 (193)
T KOG4059|consen 25 LYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDLS-----N 93 (193)
T ss_pred hhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------ccceeEEecCCCCeEEEEEEEcccc-----c
Confidence 58999999998888763 467999999999999987665 4567999999999999999999984 7
Q ss_pred HHHHHHhhhC----CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHH
Q 031127 77 VTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLF 152 (165)
Q Consensus 77 l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~ 152 (165)
+..||..|++ |.++ .|.|.+.++ ....|.+|..+.- .=+...|..++-..|..++-.++.+.||+.
T Consensus 94 l~slDeQEgv~~G~Y~~~-~V~V~t~eg----~~itcR~Yl~snl-----~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~q 163 (193)
T KOG4059|consen 94 LPSLDEQEGVSQGIYEPR-TVYVKTHEG----ESITCRAYLLSNL-----YELPKQPSPTYKQCIVKGAKENSLPEDYVQ 163 (193)
T ss_pred CccchhhhcccccceEEE-EEEEecCCC----ceeehhHhhhhhh-----hhccCCCCchHHhhhhhcccccCCcHHHHH
Confidence 7889999976 8888 899988743 3478999999632 112335778899999999999999999999
Q ss_pred HHHH
Q 031127 153 QLEK 156 (165)
Q Consensus 153 ~l~~ 156 (165)
+|..
T Consensus 164 kL~a 167 (193)
T KOG4059|consen 164 KLRA 167 (193)
T ss_pred HHhc
Confidence 9863
No 7
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=99.24 E-value=2.3e-11 Score=84.75 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=61.4
Q ss_pred eeEEEEEEecCCCchHHHHHHHHHhhhC----CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHH
Q 031127 59 VCWGAAYKITKKEDKEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIA 134 (165)
Q Consensus 59 ~v~Gv~y~i~~~~~~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a 134 (165)
.||||+|+|+.+ .++.||++|+. |.+. .|+|.+.+ + ..+.|++|++++. .. ..|...+.
T Consensus 1 ~V~Gvly~l~~~-----d~~~LD~~Eg~~~g~Y~~~-~v~V~~~~---g-~~~~a~tY~~~~~---~~----~~Ps~~Yl 63 (83)
T PF13772_consen 1 RVWGVLYELSEE-----DLESLDRYEGVPIGAYRRI-EVTVSTAD---G-KPVEAFTYVANPK---PE----GPPSDRYL 63 (83)
T ss_dssp EEEEEEEEEEGG-----GHHHHHHHTTTTTTSEEEE-EEEEEETT---C-EEEEEEEEEESSE---EE--------HHHH
T ss_pred CEEEEEEEECHH-----HHHHHHHhcCCCCCCEEEE-EEEEEcCC---C-CEEEEEEEEcCCC---CC----CCCCHHHH
Confidence 589999999983 89999999994 6665 88998742 2 4599999999884 22 45889999
Q ss_pred HHHHhccCCCCCcHHHHHHH
Q 031127 135 KQIIQAEGPSGPNRDYLFQL 154 (165)
Q Consensus 135 ~~I~~a~G~sG~n~eYl~~l 154 (165)
+.|.+++-..|.+.+|+.+|
T Consensus 64 ~~i~~GA~e~gLp~~Yv~~L 83 (83)
T PF13772_consen 64 DLILRGAREHGLPAEYVEKL 83 (83)
T ss_dssp HHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhhC
Confidence 99999999999999999876
No 8
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.14 E-value=6.1e-10 Score=79.14 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=62.7
Q ss_pred EEEecccccCCCCCcceee-eeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCC-eeEEEEEEecCCCchHHHHHHH
Q 031127 3 VFGYGSLIWKAGFHFDERV-VGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGE-VCWGAAYKITKKEDKEVAVTYL 80 (165)
Q Consensus 3 vFgYGSL~w~p~f~~~~~~-~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~-~v~Gv~y~i~~~~~~~~~l~~L 80 (165)
||.|||||.....+..-.. .+.+.+........ .+. ..|...+|++++++ .|.|.+|.|++ +.++.|
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~yP~l~~~~~~~~V~G~l~~v~~-----~~l~~L 69 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLGGR--YLY----GGGGYPALVPGEGSGRVEGELYEVDD-----EELARL 69 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEEEE--EEE----TTSSCEEEESCTTSSEEEEEEEEE-H-----HHHHHH
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEEeE--EEe----CCCCCCEEEEcCCCCEEEEEEEEECH-----HHHHhh
Confidence 7999999988776532111 33444443333310 001 12334577777777 99999999976 379999
Q ss_pred HHhhh--C-CcccceEEEEeCCCCCCCceEEEEEEEEe
Q 031127 81 EVREK--Q-YDKKAYLDLFTDPMATTPAVSGVMVYIAS 115 (165)
Q Consensus 81 d~RE~--~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~ 115 (165)
|..|. . |.+. .++|...++ ..++|.||+.+
T Consensus 70 D~~E~~~~~Y~R~-~v~v~~~~g----~~~~a~vYv~~ 102 (102)
T PF06094_consen 70 DEYEGEGSLYRRV-RVPVELGDG----EEVEAWVYVWN 102 (102)
T ss_dssp HHHTTTTTSEEEE-EEEEECCTS----SEEEEEEEEE-
T ss_pred HhhcCCCCceEEE-EEEEEeCCC----CEeEEEEEEEC
Confidence 99974 3 7776 899987542 34699999974
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.5e-05 Score=57.47 Aligned_cols=91 Identities=26% Similarity=0.387 Sum_probs=61.8
Q ss_pred EEEecccccCCCCCc------ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHH
Q 031127 3 VFGYGSLIWKAGFHF------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (165)
Q Consensus 3 vFgYGSL~w~p~f~~------~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~ 76 (165)
||-||||.=...-+. ..-..+.++||+.-.- . +..|| +++. .+.|||=+|++++ +.
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~ly~l-g-------~~YP~----~~~g-~~~V~Gevy~~d~-----~~ 65 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQLYDL-G-------PGYPG----LVPG-EGKVHGEVYRIDE-----ET 65 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeeeecc-C-------CCCcE----EcCC-CCEEEEEEEEECH-----HH
Confidence 899999984443221 1234567788544332 1 23554 4443 3599999999995 49
Q ss_pred HHHHHHhhhC--CcccceEEEEeCCCCCCCceEEEEEEEEeCC
Q 031127 77 VTYLEVREKQ--YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (165)
Q Consensus 77 l~~Ld~RE~~--Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (165)
++.||.-|.. |+++ .|.+.+..+ . ..|++|+.+.+
T Consensus 66 l~~LDelE~~~~y~r~-~v~v~~~~G---~--~~aw~Y~y~~~ 102 (120)
T COG2105 66 LEALDELEDYGGYYRR-EVEVTTPLG---S--KEAWLYVYAER 102 (120)
T ss_pred HhhhhhhhccCceEEE-EEEEEcCCC---C--EEEEEEEEcCC
Confidence 9999999998 6777 777766432 2 27999999875
No 10
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=0.8 Score=35.69 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=61.4
Q ss_pred eEEEecccccCCCCCcceeeeeEEeceEEEEEeecccCCCCCCCCceeeE------ee--eCCCCeeEEEEEEecCCCch
Q 031127 2 WVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVT------LE--PAEGEVCWGAAYKITKKEDK 73 (165)
Q Consensus 2 wvFgYGSL~w~p~f~~~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~t------L~--~~~g~~v~Gv~y~i~~~~~~ 73 (165)
-||-||.|=-..+=++--. -.+.|..+-+++..+. ...|=.+.| |. |-.|-.|.|=+|.|++
T Consensus 8 lvFVYGTLKrg~pNh~~L~--d~~~g~A~F~gr~~T~----~kyPLVigt~ynIPfLLnkpGsG~~V~GElY~Vd~---- 77 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFLLE--DLINGDAVFIGRGTTL----LKYPLVIGTRYNIPFLLNKPGSGYHVEGELYEVDE---- 77 (168)
T ss_pred EEEEEeeecCCCCCchhhh--hccCCceEEEEeceec----cccceEeecccCCceEEcCCCCcceeeeEEEEeCH----
Confidence 4899999865544333211 2236777666665332 445533332 22 2235679999999998
Q ss_pred HHHHHHHHHhhhC---CcccceEEEEeCCC---CCCCceEEEEEEEE
Q 031127 74 EVAVTYLEVREKQ---YDKKAYLDLFTDPM---ATTPAVSGVMVYIA 114 (165)
Q Consensus 74 ~~~l~~Ld~RE~~---Y~~~~~v~v~~~~~---~~~~~~~~al~Yv~ 114 (165)
.-|..||.-|.. |.|. .+.|...++ ..++.++.|.+|.-
T Consensus 78 -rmL~~LD~lE~~~~~Y~R~-~i~v~~~ede~eg~g~~~v~c~~Y~~ 122 (168)
T KOG4450|consen 78 -RMLSRLDELEGCPNHYERE-PIRVIEEEDEEEGEGGVTVQCAVYAH 122 (168)
T ss_pred -HHHhhhHhhcccHHHhhhh-hhHHHHhhhhcccCCCceeeehhHHH
Confidence 489999999997 6655 555554321 12334677877754
No 11
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=59.41 E-value=40 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHhccC-------CCCCcHHHHHHHHHHHHHcCCC
Q 031127 124 YLGPASLEDIAKQIIQAEG-------PSGPNRDYLFQLEKALLELGTF 164 (165)
Q Consensus 124 ~~g~~~~~~~a~~I~~a~G-------~sG~n~eYl~~l~~~l~~lgi~ 164 (165)
|.-..+..++++..++|-| ..|.+.+|+..|.+.|+++|+.
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~ 87 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVE 87 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCC
Confidence 3333444577788888888 3577899999999999998763
No 12
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.43 E-value=20 Score=19.03 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHcCCCC
Q 031127 136 QIIQAEGPSGPNRDYLFQLEKALLELGTFP 165 (165)
Q Consensus 136 ~I~~a~G~sG~n~eYl~~l~~~l~~lgi~~ 165 (165)
.+..+...+|.-.+ .+++.+.|++.|+.|
T Consensus 6 ~ll~a~~~~g~~~~-a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 6 ALLRACAKAGDPDA-ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHCCCHHH-HHHHHHHHHHhCCCC
Confidence 44555555665444 888999999999998
No 13
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.89 E-value=8.2 Score=30.17 Aligned_cols=9 Identities=56% Similarity=1.117 Sum_probs=7.8
Q ss_pred CeEEEeccc
Q 031127 1 MWVFGYGSL 9 (165)
Q Consensus 1 ~wvFgYGSL 9 (165)
.|.||||+|
T Consensus 100 ~~gf~yGTL 108 (168)
T COG4762 100 VRGFGYGTL 108 (168)
T ss_pred eeEEeeccc
Confidence 489999997
No 14
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=46.79 E-value=16 Score=30.04 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHcCCCC
Q 031127 147 NRDYLFQLEKALLELGTFP 165 (165)
Q Consensus 147 n~eYl~~l~~~l~~lgi~~ 165 (165)
+.||||.|+=.|+++||.|
T Consensus 209 cydYLfelaikm~klgipp 227 (238)
T KOG2631|consen 209 CYDYLFELAIKMKKLGIPP 227 (238)
T ss_pred HHHHHHHHHHHHHHcCCCh
Confidence 5799999999999999976
No 15
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=46.47 E-value=33 Score=29.43 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=49.4
Q ss_pred CCCCceeeEeeeCCCCeeEEEEEEecCCCchHHHHHHHHHhhhCCcccceEEEEeCCCCCCC----------ceEEEEEE
Q 031127 43 PKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTP----------AVSGVMVY 112 (165)
Q Consensus 43 ~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~l~~Ld~RE~~Y~~~~~v~v~~~~~~~~~----------~~~~al~Y 112 (165)
...-|.+.||+-.+-+.|-|.+|.=.+ ..-+.++.+-++|.-+..-.++.....++. .-.+|+.|
T Consensus 146 Dr~dgl~~tlvv~~~g~~Lglvysske-----s~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f 220 (359)
T KOG4311|consen 146 DRKDGLVATLVVVDTGAVLGLVYSSKE-----SLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIF 220 (359)
T ss_pred CCCCCeEEEEEehhhhhhhhhhcccHH-----HHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEE
Confidence 445688999998888999999997554 266688988888443323333333211111 11568999
Q ss_pred EEeCCCCCCCCCC
Q 031127 113 IASANKQLNSNYL 125 (165)
Q Consensus 113 v~~~~~~~n~~~~ 125 (165)
+.+++ +|-|.
T Consensus 221 ~v~q~---g~gfC 230 (359)
T KOG4311|consen 221 LVTQD---GPGFC 230 (359)
T ss_pred EEecC---CCccc
Confidence 99998 88654
No 16
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=31.23 E-value=33 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=20.4
Q ss_pred ceEEEEEeecccCCCCCCCCceeeEe
Q 031127 27 GYRRVFHQGSTDHRGTPKFPGRTVTL 52 (165)
Q Consensus 27 Gy~R~F~~~s~~hRGt~~~PG~v~tL 52 (165)
.-...-||++...|-...-||+|++|
T Consensus 84 ~~~~~vWqS~~~d~~~~SlPGLVLAI 109 (109)
T PF07107_consen 84 SHCPCVWQSRLPDRAGKSLPGLVLAI 109 (109)
T ss_pred CCCCceecccccccccCCcCCEEEeC
Confidence 34566788888777788899999986
No 17
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=26.83 E-value=30 Score=27.97 Aligned_cols=8 Identities=50% Similarity=1.680 Sum_probs=6.9
Q ss_pred CeEEEecc
Q 031127 1 MWVFGYGS 8 (165)
Q Consensus 1 ~wvFgYGS 8 (165)
+|+|||++
T Consensus 19 IWl~gy~~ 26 (198)
T PF08480_consen 19 IWLFGYDG 26 (198)
T ss_pred EEEEecCC
Confidence 69999975
No 18
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=24.96 E-value=99 Score=27.97 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCC
Q 031127 131 EDIAKQIIQAEGPSGPNRDYLFQLEKALLELGTF 164 (165)
Q Consensus 131 ~~~a~~I~~a~G~sG~n~eYl~~l~~~l~~lgi~ 164 (165)
.++++...+|..+.|++..+|.++.+.|.++|..
T Consensus 442 ~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~~ 475 (477)
T PLN02863 442 KELRRAALDAIKERGSSVKDLDGFVKHVVELGLE 475 (477)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHhccC
Confidence 4555666677888999999999999999999874
No 19
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=23.85 E-value=36 Score=20.53 Aligned_cols=28 Identities=39% Similarity=0.725 Sum_probs=21.0
Q ss_pred cccCCCCCCCCceeeEeeeCCCCeeEEEEEEecC
Q 031127 36 STDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITK 69 (165)
Q Consensus 36 s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~ 69 (165)
-+||.||| ..|..++|..||=..|..=.
T Consensus 5 H~D~~GtP------~~ltd~~G~~vW~a~y~~wG 32 (41)
T PF03527_consen 5 HTDHLGTP------QELTDEDGNIVWRAEYDAWG 32 (41)
T ss_pred ecCCCCCc------HHHHHhcCceEEEEeechhh
Confidence 37899999 55666678899988887543
No 20
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=23.83 E-value=1e+02 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCC
Q 031127 129 SLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGT 163 (165)
Q Consensus 129 ~~~~~a~~I~~a~G~sG~n~eYl~~l~~~l~~lgi 163 (165)
..+++|+.|. .+|...+.++||+|||
T Consensus 67 a~qeiaQei~---------Daff~dvDhs~RElGi 92 (180)
T COG5452 67 AAQEIAQEIV---------DAFFKDVDHSLRELGI 92 (180)
T ss_pred HHHHHHHHHH---------HHHHhhhhHHHHHhCC
Confidence 4677888887 5799999999999998
No 21
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=21.98 E-value=60 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=9.0
Q ss_pred CCcHHHHHHHH
Q 031127 145 GPNRDYLFQLE 155 (165)
Q Consensus 145 G~n~eYl~~l~ 155 (165)
|.|.|||++..
T Consensus 1 ~~n~eYLKNVl 11 (46)
T smart00755 1 EANFEYLKNVL 11 (46)
T ss_pred CccHHHHHHHH
Confidence 57899999865
No 22
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.26 E-value=46 Score=23.42 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=11.3
Q ss_pred eeeEEeceEEEEEee
Q 031127 21 VVGFIKGYRRVFHQG 35 (165)
Q Consensus 21 ~~g~l~Gy~R~F~~~ 35 (165)
+.=.++||+|||-.-
T Consensus 7 rr~~lqG~~kRyFvL 21 (89)
T PF15409_consen 7 RRKPLQGWHKRYFVL 21 (89)
T ss_pred ccccCCCceeEEEEE
Confidence 344689999998764
Done!