Query 031127
Match_columns 165
No_of_seqs 131 out of 682
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 100.0 6.8E-30 2.3E-34 201.1 8.4 137 1-156 17-162 (188)
2 2qik_A UPF0131 protein YKQA; N 100.0 1.6E-29 5.6E-34 210.5 9.9 137 1-163 128-276 (285)
3 2jqv_A AT3G28950, AIG2 protein 99.8 4.9E-19 1.7E-23 136.5 9.1 113 1-135 9-128 (165)
4 2g0q_A AT5G39720.1 protein; st 99.7 1.1E-17 3.7E-22 130.3 9.8 131 1-162 18-155 (173)
5 1xhs_A Hypothetical UPF0131 pr 98.9 5.6E-09 1.9E-13 76.6 9.2 88 1-117 1-96 (121)
6 1vkb_A Hypothetical protein; g 98.9 3.4E-10 1.2E-14 87.0 0.9 124 2-152 15-157 (161)
7 3jud_A AIG2-like domain-contai 98.8 7.7E-09 2.6E-13 78.8 7.8 100 2-117 3-124 (153)
8 1v30_A Hypothetical UPF0131 pr 98.8 1.7E-08 5.7E-13 74.4 7.5 85 2-116 9-100 (124)
9 2qik_A UPF0131 protein YKQA; N 98.1 2.1E-05 7.3E-10 64.8 9.9 90 2-117 4-102 (285)
10 4dnn_A Protein quaking, MQKI, 27.6 19 0.00065 22.4 0.8 19 145-163 1-19 (56)
11 2y75_A HTH-type transcriptiona 23.0 96 0.0033 21.1 4.0 30 127-163 26-55 (129)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.96 E-value=6.8e-30 Score=201.11 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=118.1
Q ss_pred CeEEEecccccCCCCCc-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHH
Q 031127 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~-----~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~ 75 (165)
+|||+||||||++.|.. ....+|+|+||+|.|++.|.+| ++..+|.+++|++++++.|||++|+|+++
T Consensus 17 ~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~~----- 89 (188)
T 3cry_A 17 FLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNKS----- 89 (188)
T ss_dssp EEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEGG-----
T ss_pred EEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECHH-----
Confidence 59999999999998754 3577999999999999998777 67778999999998899999999999973
Q ss_pred HHHHHHHhhhC----CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHH
Q 031127 76 AVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYL 151 (165)
Q Consensus 76 ~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl 151 (165)
.++.||.||+. |.+. .|+|.+.++ ..+.|++|++++. ++ ..|.++++++|+++++.+|.+.||+
T Consensus 90 ~l~~LD~~Eg~~~g~Y~r~-~v~V~~~~g----~~~~a~vYv~~~~---~~----~~ps~~Yl~~i~~g~~~~gl~~~y~ 157 (188)
T 3cry_A 90 NLNSLDEQQGVKSGMYVVI-EVKVATQEG----KEITCRSYLMTNY---ES----APPSPQYKKIICMGAKENGLPLEYQ 157 (188)
T ss_dssp GHHHHHHHTTGGGTSCEEE-EEEEEETTC----CEEEEEEEECSSE---EE----CCCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCCCCCcEEEE-EEEEEeCCC----CEEEEEEEEecCC---CC----CCChHHHHHHHHHHHHHhCcCHHHH
Confidence 78999999983 7777 899987532 3489999999875 43 4588999999999999999999999
Q ss_pred HHHHH
Q 031127 152 FQLEK 156 (165)
Q Consensus 152 ~~l~~ 156 (165)
.+|+.
T Consensus 158 ~~L~~ 162 (188)
T 3cry_A 158 EKLKA 162 (188)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99874
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.96 E-value=1.6e-29 Score=210.52 Aligned_cols=137 Identities=20% Similarity=0.302 Sum_probs=116.8
Q ss_pred CeEEEecccccCCCCCc--------ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCc
Q 031127 1 MWVFGYGSLIWKAGFHF--------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~--------~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~ 72 (165)
+||||||||||++.|.. ....+|+|+||+|+|| .+..| |.++||+++ ++.|||++|+|++
T Consensus 128 ~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~-~~~~~-------~g~a~iv~~-g~~v~Gvly~i~~--- 195 (285)
T 2qik_A 128 IYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFT-LKRED-------GSRADMLED-GGTTEGVLYRIPY--- 195 (285)
T ss_dssp EEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEE-EEETT-------EEEEEEECS-SCEEEEEEEEECG---
T ss_pred EEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcC-cCCCC-------CeeeeEEEC-CCEEEEEEEEECH---
Confidence 59999999999999876 2236999999999999 55554 556899998 9999999999997
Q ss_pred hHHHHHHHHHhhhC----CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcH
Q 031127 73 KEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNR 148 (165)
Q Consensus 73 ~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~ 148 (165)
+++++||.||+. |.+. .|+|.+.+ + ..+.|+|||+++. + .+..|.++++++|+++++ +|.|.
T Consensus 196 --~~l~~LD~~Eg~~~g~Y~r~-~v~v~~~~---g-~~~~a~~Yv~~~~---~---~~~~Ps~~Yl~~i~~g~~-~g~~~ 261 (285)
T 2qik_A 196 --SALSYLYKREGVESLTYRPA-FVDVEAGG---R-HYKDCLTFLVLQK---E---AEIAPPQHYQIEIERGAE-LYLSP 261 (285)
T ss_dssp --GGHHHHHHHTTTTTTSEEEE-EEEEEETT---E-EEEEEEEEEESSC---C---CCCCCCHHHHHHHHHHHH-HHSCH
T ss_pred --HHHHHHHHhhCCCCCceEEE-EEEEEECC---C-CEEEEEEEEecCC---C---CCCCCHHHHHHHHHHHHh-cCCCH
Confidence 378999999973 7777 89998753 2 4589999999885 5 356788999999999999 99999
Q ss_pred HHHHHHHHHHHHcCC
Q 031127 149 DYLFQLEKALLELGT 163 (165)
Q Consensus 149 eYl~~l~~~l~~lgi 163 (165)
||+.+|+++++.+.-
T Consensus 262 ~Y~~~l~~~~~~~~~ 276 (285)
T 2qik_A 262 EFTEKLKRHMNSLPK 276 (285)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999998764
No 3
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=4.9e-19 Score=136.48 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=84.8
Q ss_pred CeEEEecccccCCCCCc-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEE-ecCCCchH
Q 031127 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~-----~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~-i~~~~~~~ 74 (165)
+|||+||||||.+.++. ....+|+|+||+|.|++. ...|++ ++++++.|+|++|+ |++
T Consensus 9 ~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~-------~~yP~l----v~~~~~~V~G~v~~~v~~----- 72 (165)
T 2jqv_A 9 HNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKG-------LPYPCI----VSSDSGKVNGKVITGVSD----- 72 (165)
T ss_dssp EEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTT-------SSSCCE----ESCCSSEEEEEEEEEECH-----
T ss_pred eEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCC-------CCCCEE----EECCCCEEEEEEEEeCCH-----
Confidence 59999999999998765 578899999999999743 245654 45578999999997 774
Q ss_pred HHHHHHHHhhhC-CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHH
Q 031127 75 VAVTYLEVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAK 135 (165)
Q Consensus 75 ~~l~~Ld~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~ 135 (165)
+.|+.||.||+. |.+. .++|...+ +...+.|++|+.+++ .++--.|.-+.++..+
T Consensus 73 ~~l~~LD~~E~~~Y~R~-~v~v~~~d---g~~~~~a~vYv~~~~--~~~i~~G~W~~~~~~~ 128 (165)
T 2jqv_A 73 AELNNFDVIEGNDYERV-TVEVVRMD---NSEKVKVETYVWVNK--DDPRMYGEWDFEEWRV 128 (165)
T ss_dssp HHHHHHHHTTTTSEEEE-EEEEEETT---TTEEEEEEEEEETTT--TSCCSCSCCCHHHHHH
T ss_pred HHHHHHHHhccCCcEEE-EEEEEECC---CCeEEEEEEEEECCC--cccccCCCcCHHHHHH
Confidence 489999999976 8887 89988753 223468999999765 2332335556665433
No 4
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.1e-17 Score=130.28 Aligned_cols=131 Identities=18% Similarity=0.304 Sum_probs=95.7
Q ss_pred CeEEEecccccCCCCCc-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEE-ecCCCchH
Q 031127 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~-----~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~-i~~~~~~~ 74 (165)
+|||+||||||.+.++. ....+|+|+||+| |+.. | ...| +|++++++.|+|++|. |++
T Consensus 18 ~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l-~~~~-----~-~~yP----~lv~~~g~~V~G~v~~~v~~----- 81 (173)
T 2g0q_A 18 HNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQR-FRLK-----G-RLYP----CIVPSEKGEVHGKVLMGVTS----- 81 (173)
T ss_dssp EEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEE-CCCC-----S-SSCC----CEECCTTCEEEEEEEEEECH-----
T ss_pred EEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEE-EeeC-----C-Ceee----EEEECCCCEEEEEEEEEcCH-----
Confidence 48999999999996543 4568999999995 4331 1 2345 5666678999999875 875
Q ss_pred HHHHHHHHhhhC-CcccceEEEEeCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHH
Q 031127 75 VAVTYLEVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQ 153 (165)
Q Consensus 75 ~~l~~Ld~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~ 153 (165)
+.++.||.+|.. |.+. .++|...++ ...+.|++|+++++ .++++.+..++++-.+.- ...|+..
T Consensus 82 ~~l~~LD~~Eg~~Y~R~-~v~V~~~dg---~~~v~A~vYv~~~~--~~~~~~~~~~~~~W~~~~---------~~~~~~~ 146 (173)
T 2g0q_A 82 DELENLDAVEGNEYERV-TVGIVREDN---SEKMAVKTYMWINK--ADPDMFGEWNFEEWKRLH---------KKKFIET 146 (173)
T ss_dssp HHHHHHHHHHTTTEEEE-EEEEEESSS---SCEEEEEEEEESCS--SCSSSCCCCHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHhhcCCEEE-EEEEEECCC---CeEEEEEEEEEcCc--cccccCCCcCHHHHHHHh---------HHHHHHH
Confidence 489999999987 8777 899987542 13489999999875 235677777777765442 2567777
Q ss_pred HHHHHHHcC
Q 031127 154 LEKALLELG 162 (165)
Q Consensus 154 l~~~l~~lg 162 (165)
..+.++..+
T Consensus 147 ~~~~m~~~~ 155 (173)
T 2g0q_A 147 FKKIMECKK 155 (173)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcc
Confidence 777776654
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=98.92 E-value=5.6e-09 Score=76.55 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=64.9
Q ss_pred CeEEEecccccCCCCCc-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHH
Q 031127 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (165)
Q Consensus 1 ~wvFgYGSL~w~p~f~~-----~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~ 75 (165)
|.||.|||||-....+. ....+++++||++.+. | ..|+.+ +.++ .|+|.+|+|++ +
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~-------g--~yP~lv----~~~g-~V~Gevy~v~~-----~ 61 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSL-------G--HYPGAV----PGNG-TVHGEVYRIDN-----A 61 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEEC-------S--SSEEEE----EEEE-EEEEEEEECCH-----H
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEe-------c--CCCeEE----ecCC-EEEEEEEEeCH-----H
Confidence 57999999998776543 2345699999988754 2 367755 3334 99999999976 4
Q ss_pred HHHHHHHhhh--C-CcccceEEEEeCCCCCCCceEEEEEEEEeCC
Q 031127 76 AVTYLEVREK--Q-YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (165)
Q Consensus 76 ~l~~Ld~RE~--~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (165)
.|+.||.-|. . |.+. .+++ . + ..|++|+..+.
T Consensus 62 ~l~~LD~~Eg~~~~Y~R~-~v~~--~---~----g~a~vY~~~~~ 96 (121)
T 1xhs_A 62 TLAELDALRTRGGEYARQ-LIQT--P---Y----GSAWMYVYQRP 96 (121)
T ss_dssp HHHHHHHHHSTTSCEEEE-EEEE--T---T----EEEEEEEECSC
T ss_pred HHHHHHHhcCCCCCEEEE-EEEc--C---C----CEEEEEEECCc
Confidence 8999999997 3 7776 6663 2 1 37999998754
No 6
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=98.87 E-value=3.4e-10 Score=87.00 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=80.6
Q ss_pred eEEEecccccCCCCC-c-c------ee--eee-EEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCC
Q 031127 2 WVFGYGSLIWKAGFH-F-D------ER--VVG-FIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKK 70 (165)
Q Consensus 2 wvFgYGSL~w~p~f~-~-~------~~--~~g-~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~ 70 (165)
.||-||+|+=...-+ . . -+ ..+ ++.||...|.-. ...| .++++|.+|+.|+|.+|+|++
T Consensus 15 ~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~-------~~~p--~~~i~p~~g~~V~Gevy~v~~- 84 (161)
T 1vkb_A 15 HIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGE-------HNIP--WLLYLPGKGHCVTGEIYEVDE- 84 (161)
T ss_dssp EEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETT-------TTEE--EEESCTTSSBCCEEEEEEECH-
T ss_pred EEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecC-------CCcc--eeEeecCCCCEEEEEEEEECH-
Confidence 589999998332211 1 1 12 233 456777777521 1122 377788778899999999997
Q ss_pred CchHHHHHHHHHhhhC---CcccceEEEEeC-----CCCCCCceEEEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHhccC
Q 031127 71 EDKEVAVTYLEVREKQ---YDKKAYLDLFTD-----PMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEG 142 (165)
Q Consensus 71 ~~~~~~l~~Ld~RE~~---Y~~~~~v~v~~~-----~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~a~~I~~a~G 142 (165)
+.|+.||..|.. |.+. .++|... ++. + ..+.|++|+++.. . +..|...+.+ |..+++
T Consensus 85 ----~~L~~LD~~Eg~p~~Y~R~-~v~V~~~~~~~~~~~-g-~~v~A~vYv~~~~---~----~~lps~~Yl~-i~~ga~ 149 (161)
T 1vkb_A 85 ----QMLRFLDDFEDCPSMYQRT-ALQVQVLEWEGDGDP-G-DSVQCFVYTTATY---A----PEWLFLPYHE-SYDSEG 149 (161)
T ss_dssp ----HHHHHHHHHTTTTTSCEEE-EEEEEEEEEC----C-C-SEEEEEEEEESCC---C----GGGGGSCCCS-SCCTTS
T ss_pred ----HHHHHHHHhcCCCCceEEE-EEEEEecccccccCC-C-CEEEEEEEEcCCC---C----ccCCChhHHH-HHhhHH
Confidence 489999999974 8877 8888761 011 2 4589999998743 2 2234444556 777777
Q ss_pred CCCCcHHHHH
Q 031127 143 PSGPNRDYLF 152 (165)
Q Consensus 143 ~sG~n~eYl~ 152 (165)
..|. +|+.
T Consensus 150 ~~gl--~Yv~ 157 (161)
T 1vkb_A 150 PHGL--RYNP 157 (161)
T ss_dssp TTCC--CCCC
T ss_pred HhCC--Cccc
Confidence 7776 6653
No 7
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=98.84 E-value=7.7e-09 Score=78.83 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=63.2
Q ss_pred eEEEecccccCCCCCc--ce--eeeeEEeceEEEEEeecccCCCCCCCCcee--------eEeeeCCCCeeEEEEEEecC
Q 031127 2 WVFGYGSLIWKAGFHF--DE--RVVGFIKGYRRVFHQGSTDHRGTPKFPGRT--------VTLEPAEGEVCWGAAYKITK 69 (165)
Q Consensus 2 wvFgYGSL~w~p~f~~--~~--~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v--------~tL~~~~g~~v~Gv~y~i~~ 69 (165)
-||-||+|+-...-+. .. ...|.+.|-.+.. ...|+.+ +...|.+|+.|+|.+|+|++
T Consensus 3 ~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~----------~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly~v~~ 72 (153)
T 3jud_A 3 LVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTL----------EPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDE 72 (153)
T ss_dssp EEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEES----------SCBCEEEETTTTEEEEBSCTTSSBCCEEEEEEECH
T ss_pred EEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeC----------CCccEEEecCCCCceEEecCCCCCEEEEEEEEECH
Confidence 4899999996554322 11 1235555543211 1233333 22233346689999999986
Q ss_pred CCchHHHHHHHHHhhh--C-CcccceEEEEeCCC-------CCCCceEEEEEEEEeCC
Q 031127 70 KEDKEVAVTYLEVREK--Q-YDKKAYLDLFTDPM-------ATTPAVSGVMVYIASAN 117 (165)
Q Consensus 70 ~~~~~~~l~~Ld~RE~--~-Y~~~~~v~v~~~~~-------~~~~~~~~al~Yv~~~~ 117 (165)
+.|+.||..|. . |.+. .++|...+. ......+.|+||+.+..
T Consensus 73 -----~~l~~LD~~Eg~~~~Y~R~-~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~~ 124 (153)
T 3jud_A 73 -----RMLRFLDDFQSCPALYQRT-VLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATF 124 (153)
T ss_dssp -----HHHHHHHHHTTTTTSCEEE-EEEEEEEC------CCSCCCCEEEEEEEEBCCC
T ss_pred -----HHHHHHHHhcCCCCceEEE-EEEEEeeccccccccccCCCCEEEEEEEEcCCC
Confidence 48999999998 3 8887 888887521 01224699999999865
No 8
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=98.78 E-value=1.7e-08 Score=74.39 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=60.0
Q ss_pred eEEEecccccCCCCCc-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHHH
Q 031127 2 WVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (165)
Q Consensus 2 wvFgYGSL~w~p~f~~-----~~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~~ 76 (165)
.||.|||||-....+. ....+|.+.||++. . | . .|+.+ +.++ .|+|.+|+|++ +.
T Consensus 9 ~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~--~------g-~-yP~lv----~~~g-~V~Gev~~v~~-----~~ 68 (124)
T 1v30_A 9 RIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY--F------E-Y-LPYAV----KGKG-KLKVEVYEVDK-----ET 68 (124)
T ss_dssp EEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE--E------S-S-SEEEE----EEEE-EEEEEEEEECH-----HH
T ss_pred EEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE--E------C-C-CCEEE----ecCC-EEEEEEEEECH-----HH
Confidence 5899999998776542 23467889999887 2 2 1 67655 3334 49999999986 48
Q ss_pred HHHHHHhh-hC-CcccceEEEEeCCCCCCCceEEEEEEEEeC
Q 031127 77 VTYLEVRE-KQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASA 116 (165)
Q Consensus 77 l~~Ld~RE-~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~ 116 (165)
|+.||..| .. |.+. .| ... ++ .|++|+..+
T Consensus 69 l~~LD~~E~~~~Y~R~-~V--~~~---~g----~A~vY~~~~ 100 (124)
T 1v30_A 69 FERINEIEIGTGYRLV-EV--STK---FG----KAFLWEWGS 100 (124)
T ss_dssp HHHHTTCGGGGGEEEE-EE--CCT---TS----CEEEEEECS
T ss_pred HHHhhhccCCCCeEEE-EE--EcC---CC----EEEEEEeCC
Confidence 99999999 44 7776 43 222 22 299999865
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=98.07 E-value=2.1e-05 Score=64.82 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=60.3
Q ss_pred eEEEecccccCCCCCc-----c-eeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCCchHH
Q 031127 2 WVFGYGSLIWKAGFHF-----D-ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (165)
Q Consensus 2 wvFgYGSL~w~p~f~~-----~-~~~~g~l~Gy~R~F~~~s~~hRGt~~~PG~v~tL~~~~g~~v~Gv~y~i~~~~~~~~ 75 (165)
.||-||||+-....+. . ...+++++| +.+.. | ..||.+. .+.+++.|.|-+|+|++
T Consensus 4 ~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g--~L~~~------g--~~P~lv~--~~~~~~~V~Gev~~v~~------ 65 (285)
T 2qik_A 4 LLFVYGTLRKHEKNHHLLAQSACINEQARTKG--SLFAA------K--EGPTVVF--NDEDEGYIYGEVYEADE------ 65 (285)
T ss_dssp EEEECSTTSTTSTTGGGGTTCEEEEEEEEEES--EEEEC----------CEEEEC--CTTCCSEEEEEEEEECH------
T ss_pred EEEEECCCCCCCcChHHhCCCeEeeeeEEEEE--EEEEc------C--CCCeEEE--ccCCCCEEEEEEEEcCH------
Confidence 5899999996665432 1 134678876 44432 2 1476552 22257899999999975
Q ss_pred HHHHHHHhhh--C-CcccceEEEEeCCCCCCCceEEEEEEEEeCC
Q 031127 76 AVTYLEVREK--Q-YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (165)
Q Consensus 76 ~l~~Ld~RE~--~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (165)
. .||.-|. . |.|. .++|...+ + .+.|++|+.++.
T Consensus 66 ~--~LD~~E~~~~~Y~R~-~v~v~~~~---g--~~~a~vY~~~~~ 102 (285)
T 2qik_A 66 L--CIHKLDQFFQGYHKQ-TVFVETDV---G--IKIALIYFMNKD 102 (285)
T ss_dssp H--HHHHHHHHSTTCEEE-EEEEEETT---E--EEEEEEEECC--
T ss_pred H--HhHHhcCCCCceeEE-EEEEEcCC---C--EEEEEEEEeccc
Confidence 2 7999997 3 8877 88888753 2 379999998764
No 10
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=27.57 E-value=19 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHHHHHHcCC
Q 031127 145 GPNRDYLFQLEKALLELGT 163 (165)
Q Consensus 145 G~n~eYl~~l~~~l~~lgi 163 (165)
|+..|||-+|..-=+.|+.
T Consensus 1 ~s~~eYL~qLlkdkk~l~~ 19 (56)
T 4dnn_A 1 GSTPDYLMQLMNDKKLMSS 19 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHh
Confidence 7889999998876655543
No 11
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=23.00 E-value=96 Score=21.07 Aligned_cols=30 Identities=37% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCC
Q 031127 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGT 163 (165)
Q Consensus 127 ~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~l~~lgi 163 (165)
+.+.+++|+.. |.|..++.++...|++.|+
T Consensus 26 ~~s~~ela~~~-------~i~~~~v~~il~~L~~~Gl 55 (129)
T 2y75_A 26 PTSLKSIAQTN-------NLSEHYLEQLVSPLRNAGL 55 (129)
T ss_dssp CBCHHHHHHHT-------TSCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCc
Confidence 45777776654 7899999999999999886
Done!