BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031128
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 5 MGLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
+G L VHV+ L A + S+PY I MG Q TR +++ +NP+WN + I D
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 64 NLPI-KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKI 113
+ LT++D+D FS DD +G E + K+R E G + ++
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVA------KIRTEQESKGPMTRRL 490
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 5 MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
+G+L+V VL+ +L D SDP+ ++++G +L+T V N+NPEWN+ T I D
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 64 NLPIKLTVYDKDTFSLDDKMG 84
+ +++TV+D+D D +G
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLG 92
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 7 LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQK-------LKTRVVKNNVNPEWNEDLTL 58
+LRV V+ G++LA +D+ +SDPYV + + ++T+ +K +NP+WNE+
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 59 SISDSNLPIKLTVYDKDTFSLDDKMGDAE 87
++ SN + V+D++ + DD +G +
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVD 110
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 5 MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQ-KLKTRVVKNNVNPEWNEDLTL 58
G L V ++R V+LA D SDP+V + MGK+ K KT++ K +NPE+NE+
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 59 SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
I S+L K ++V+D D +D +G + I+ E LK E L N
Sbjct: 96 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 5 MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQ-KLKTRVVKNNVNPEWNEDLTL 58
G L V ++R V+LA D SDP+V + MGK+ K KT++ K +NPE+NE+
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 59 SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
I S+L K ++V+D D +D +G + I+ E LK E L N
Sbjct: 74 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 5 MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTL 58
G L V ++R V+LA D SDP+V + + K K KT++ K +NPE+NE+
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 59 SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
I S+L K ++V+D D +D +G + I+ E LK E L N
Sbjct: 96 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 7 LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLS 59
++RV V+ G+ LA +D++ +SDPYV + + ++T+ +K ++NP+WNE++
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 60 ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP 92
+ + V+D++ + DD +G + + P
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYP 113
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 26 SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTFS 78
SDPYV +K+ + K KT+ +K+++NPEWNE + +S+ +L+V +D D S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 79 LDDKMGDAEFYITPFLEA 96
+D MG F I+ +A
Sbjct: 253 RNDFMGSLSFGISELQKA 270
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 7 LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ------KLKTRVVKNNVNPEWNEDLTLS 59
++RV V+ G+ LA +D++ +SDPYV + + ++T+ +K ++NP+WNE++
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 60 ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 93
+ I V+D++ + DD +G + + P
Sbjct: 69 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 6 GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDS 63
G L V ++ L D +++ DPYV + Q K+ V + PEWNE ++S+
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 64 NLPIKLTVYDKDTFSLDDKMGDAEFYITP-FLEA 96
+K ++DKD + DD +G+A + P F+E
Sbjct: 70 TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD 75
SSDPYV +++GK K +T+ + N+NP W E+ +S+ IK+ V D+D
Sbjct: 37 SSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 26 SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTFS 78
SDPYV +K+ + K KT+ +K ++NPEWNE + +S+ +L+V +D D S
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 79 LDDKMGDAEFYITPFLEA 96
+D MG F I+ +A
Sbjct: 112 RNDFMGSLSFGISELQKA 129
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 26 SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTFS 78
SDPYV +K+ + K KT+ +++ +NP+WNE T + SD + + + ++D D +
Sbjct: 38 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 79 LDDKMGDAEFYITPFLEALKMRLEG 103
+D MG F ++ E +KM G
Sbjct: 98 RNDFMGSLSFGVS---ELMKMPASG 119
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI- 60
L V V NL D SDPYV +K+ + K KT+ +++ +NP+WNE T +
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 61 -SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG 103
SD + + + ++D D + +D MG F ++ E +KM G
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS---ELMKMPASG 118
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 5 MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM--------------GKQKLKTRVVKNNVN 49
+G L +H+L+ NL RD SDP+V + + + K +T+ V+ ++N
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 50 PEWNEDLTL-SISDSNL---PIKLTVYDKDTFSLDDKMGD 85
PEWN+ + SIS L +++TV+D D FS +D +G+
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +L+ ++L +D SDPYV I + K+K +T+V + +NP +NE S+ +
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 64 NLP---IKLTVYDKDTFSLDDKMG 84
L + +VYD D FS D +G
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG 105
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYV---VIKMGK--QKLKTRVVKNNVNPEWNEDLTLS 59
GLL V +++ NL D+ SDPYV +I G+ +K KT + KN +NP +NE L
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 60 I---SDSNLPIKLTVYDKDTFSLDDKMG 84
+ S N+ + + V D D ++ +G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIG 239
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 26 SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLT--VYDKDTFS 78
SDPYV +K+ K KTR VK +NP WNE ++ ++ +L+ V+D D S
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 79 LDDKMGDAEFYITPFLEA 96
+D MG F ++ L+A
Sbjct: 101 RNDFMGAMSFGVSELLKA 118
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +L+ ++L +D SDPYV I + K+K +T+V + +NP +NE S+ +
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 64 NLP---IKLTVYDKDTFSLDDKMG 84
L + +VYD D FS D +G
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG 106
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYV---VIKMGK--QKLKTRVVKNNVNPEWNEDLTLS 59
GLL V +++ NL D+ SDPYV +I G+ +K KT + KN +NP +NE L
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 60 I---SDSNLPIKLTVYDKDTFSLDDKMG 84
+ S N+ + + V D D ++ +G
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIG 240
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L D+ +SDPYV + + K+K +T+V + +NP +NE T + S
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 64 NLPIK---LTVYDKDTFSLDDKMGD 85
L K + VYD D FS D +G+
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGE 105
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
G L V +L NL DV SDPYV I + + K KT + KN +NP +NE +
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 60 ISDSNL---PIKLTVYDKDTFSLDDKMG 84
+ + + +TV D D +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L +D +SDP+V I + K KL+T+V + N+NP WNE
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 83
Query: 64 NLPIK--------LTVYDKDTFSLDDKMGD 85
P + L V D D FS +D +G+
Sbjct: 84 GFPYEKVVQRILYLQVLDYDRFSRNDPIGE 113
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L D+ +SDPYV + + K+K +T+V + +NP +NE T + S
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 64 NLPIK---LTVYDKDTFSLDDKMGD 85
L K + VYD D FS D +G+
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGE 103
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI- 60
L V V NL D SDPYV +K+ + K KT+ +++ +NP+WNE T +
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 61 -SDSNLPIKLTVYDKDTFSLDDKMGDAEFYIT 91
SD + + + ++D D + +D G F ++
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVS 111
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L D+ +SDPYV + + K+K +T+V + +NP +NE T + S
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 64 NLPIK---LTVYDKDTFSLDDKMGD 85
L K + VYD D FS D +G+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGE 128
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L D+ +SDPYV + + K+K +T+V + +NP +NE T + S
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 64 NLPIK---LTVYDKDTFSLDDKMGD 85
L K + VYD D FS D +G+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGE 120
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
L V +++ L D+ +SDPYV + + K+K +T+V + +NP +NE T + S
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 64 NLPIK---LTVYDKDTFSLDDKMGD 85
L K + VYD D FS D +G+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGE 120
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 14 RGVNLAVRDVVSSDPYV---VIKMGKQKLKTRVVKNNVNPEWNEDLTL----SISDSNLP 66
RG+ ++SDPY+ ++ K K+KTRV++ ++P ++E T L
Sbjct: 32 RGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELA 91
Query: 67 IKLTVYDKDTFSLDDKMGD 85
+ T+ D FS DD +G+
Sbjct: 92 LHFTILSFDRFSRDDIIGE 110
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLS--ISDSNLPIKLTVYDKDTFSLDDK 82
++D Y+ + G Q+ +T VV NN NP W + + + + P+++ V+D D DD
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 83 MGDAE 87
+G +
Sbjct: 473 LGSCD 477
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTL-SI 60
L+ ++R L D +DPYV + + KL+T+ ++N NP WNE L I
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 61 SDSNL---PIKLTVYDKDTFSLDDKMGDAEFYI 90
++ ++ ++++V D+D F ++ +G+ F +
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTL-SI 60
L+ ++R L D +DPYV + + KL+T+ ++N NP WNE L I
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 61 SDSNL---PIKLTVYDKDTFSLDDKMGDAEFYI 90
++ ++ ++++V D+D F ++ +G+ F +
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPY--VVIKMGKQKLKTRVVKNNVNPEWNE--DLTLSISD 62
LR+ VL NL +D DP+ VV+ Q T VKN ++P+WN+ DL + SD
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKSD 64
Query: 63 S 63
S
Sbjct: 65 S 65
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 27 DPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDA 86
PYV + + Q KT N +P+W + LT+ ++ + + V+ T D +G A
Sbjct: 58 SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS-KLHFRVWSHQTLKSDVLLGTA 116
Query: 87 EFYITPFLEALKMRLE 102
I L++ M+LE
Sbjct: 117 ALDIYETLKSNNMKLE 132
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 8 LRVHVLRGVNLAVRDVVS-SDPY--VVIKMGKQKLKTRVVKNNVNPEWNE--DLTLSISD 62
+R+ VL NLA +D DP+ +V+ Q T VKN ++P+WN+ DL + +D
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 63 S 63
S
Sbjct: 67 S 67
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 10 VHVLRGVNLAVRDVV-SSDPYV-VIKMGKQK----LKTRVVKNNVNPEWNEDLTLSISDS 63
V++++ NL D+ +SDPYV V M K K KT K N+NP +NE I
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 64 NL---PIKLTVYDKDTFSLDDKMG 84
L I +TV DKD S +D +G
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 25 SSDPYVVIKMGK---QKLKTRVVKNNVNPEWNE--DLTLSISDSNLPIKLTVYDKDTFSL 79
+ DPYV + + + +TR N++NP WNE + L + N+ +++T+ D + + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENV-LEITLMDAN-YVM 98
Query: 80 DDKMGDAEFYIT 91
D+ +G A F ++
Sbjct: 99 DETLGTATFTVS 110
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 25 SSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDSNLP--IKLTVYDKDTFSL 79
+ DPYV + + + +TR N++NP WNE I D N +++T+ D + + +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVM 83
Query: 80 DDKMGDAEFYIT 91
D+ +G A F ++
Sbjct: 84 DETLGTATFTVS 95
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 25 SSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDSNLP--IKLTVYDKDTFSL 79
+ DPYV + + + +TR N++NP WNE I D N +++T+ D + + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVM 98
Query: 80 DDKMGDAEFYIT 91
D+ +G A F ++
Sbjct: 99 DETLGTATFTVS 110
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNE 54
G+LRV V N+ DP V + +K KT+ V N +NP WNE
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNE 55
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 10 VHVLRGVNLAVRDVVSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61
VH R NL SDPYV + K + KT V K +NP +++ S+S
Sbjct: 30 VHACR--NLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 72 YDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
+D D LD +G+A+FY+ L+ + E +P
Sbjct: 167 WDADAPDLDTYLGEAKFYMDHMLDRTEAGTEAIPG 201
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
G L V +L NL DV SDPYV I + + K KT + KN +NP +NE +
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 60 ISDSNL---PIKLTVYDKDTFSLDDKMG 84
+ + + +TV D D +D +G
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
G L V +L NL DV SDPYV I + + K KT + KN +NP +NE +
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 60 ISDSNL---PIKLTVYDKDTFSLDDKMG 84
+ + + +TV D D +D +G
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 6 GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
G L V +L NL DV SDPYV I + + K KT + KN +NP +NE +
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 60 ISDSNL---PIKLTVYDKDTFSLDDKMG 84
+ + + +TV D D +D +G
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 22 DVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-----------LPIKLT 70
++V PY ++ KL T +V+N NP ++ TL ++ N +P K+
Sbjct: 641 ELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVD 700
Query: 71 VYDKDTFSLDDKMGDAEFYITP 92
Y K F + + D+ + P
Sbjct: 701 AYIKKQFEIIKNLEDSVVGLNP 722
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 72 YDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
+D++ LD +G+A+FY+ L+ + E +P
Sbjct: 165 WDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPG 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,990,643
Number of Sequences: 62578
Number of extensions: 197298
Number of successful extensions: 432
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 48
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)