Query 031128
Match_columns 165
No_of_seqs 248 out of 1776
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 1.9E-36 4.2E-41 206.5 15.4 165 1-165 1-168 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 3E-32 6.4E-37 186.9 18.5 144 5-148 1-145 (145)
3 cd04016 C2_Tollip C2 domain pr 100.0 1.3E-27 2.8E-32 159.1 13.6 115 5-156 1-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 9.3E-26 2E-30 151.8 12.8 88 8-95 1-95 (126)
5 cd08375 C2_Intersectin C2 doma 99.9 7.2E-25 1.6E-29 149.2 15.3 122 3-156 12-135 (136)
6 cd04042 C2A_MCTP_PRT C2 domain 99.9 5.1E-25 1.1E-29 147.2 14.2 115 7-158 1-121 (121)
7 cd08376 C2B_MCTP_PRT C2 domain 99.9 6.8E-25 1.5E-29 145.5 14.4 113 7-157 1-115 (116)
8 cd08391 C2A_C2C_Synaptotagmin_ 99.9 6.1E-25 1.3E-29 146.6 13.2 113 6-156 1-121 (121)
9 cd08379 C2D_MCTP_PRT_plant C2 99.9 7.2E-25 1.6E-29 146.8 13.1 91 7-97 1-101 (126)
10 cd08681 C2_fungal_Inn1p-like C 99.9 7.3E-25 1.6E-29 145.8 13.0 113 6-156 1-118 (118)
11 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.5E-24 5.5E-29 145.0 12.7 88 7-94 1-94 (127)
12 cd08678 C2_C21orf25-like C2 do 99.9 6.3E-24 1.4E-28 142.9 14.1 115 8-160 1-123 (126)
13 cd04024 C2A_Synaptotagmin-like 99.9 5.4E-24 1.2E-28 143.4 13.5 117 6-156 1-128 (128)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 6.7E-24 1.4E-28 141.7 13.3 89 8-96 2-93 (121)
15 cd04036 C2_cPLA2 C2 domain pre 99.9 6.3E-24 1.4E-28 141.5 12.8 111 8-156 2-117 (119)
16 cd04044 C2A_Tricalbin-like C2 99.9 1.4E-23 3E-28 140.6 13.0 120 5-158 1-124 (124)
17 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.8E-23 4E-28 144.4 13.7 89 7-95 1-92 (150)
18 cd08377 C2C_MCTP_PRT C2 domain 99.9 3.2E-23 6.9E-28 138.0 14.0 90 6-95 1-91 (119)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 7.6E-23 1.6E-27 136.7 13.3 88 8-95 2-91 (121)
20 cd04015 C2_plant_PLD C2 domain 99.9 8.8E-23 1.9E-27 142.2 13.8 115 5-157 6-158 (158)
21 cd08400 C2_Ras_p21A1 C2 domain 99.9 1.6E-22 3.5E-27 136.0 14.4 114 5-158 3-124 (126)
22 cd08373 C2A_Ferlin C2 domain f 99.9 1.9E-22 4.2E-27 135.8 14.3 116 12-165 2-124 (127)
23 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 1.4E-22 3E-27 135.8 13.5 90 7-96 1-92 (123)
24 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 9.5E-23 2.1E-27 138.3 12.9 120 7-157 1-133 (133)
25 cd04014 C2_PKC_epsilon C2 doma 99.9 2E-22 4.4E-27 136.6 14.3 116 5-158 3-130 (132)
26 cd08395 C2C_Munc13 C2 domain t 99.9 7.7E-23 1.7E-27 135.9 11.6 91 7-97 1-102 (120)
27 cd04046 C2_Calpain C2 domain p 99.9 3.1E-22 6.8E-27 134.6 14.4 89 4-93 1-90 (126)
28 cd08381 C2B_PI3K_class_II C2 d 99.9 9.3E-23 2E-27 136.4 10.9 92 5-96 12-112 (122)
29 cd08677 C2A_Synaptotagmin-13 C 99.9 1.1E-22 2.3E-27 133.9 10.5 92 3-96 11-109 (118)
30 cd08378 C2B_MCTP_PRT_plant C2 99.9 2.1E-22 4.5E-27 134.5 12.0 113 8-156 2-119 (121)
31 cd04039 C2_PSD C2 domain prese 99.9 3.6E-22 7.8E-27 130.7 12.3 94 6-99 1-101 (108)
32 cd04028 C2B_RIM1alpha C2 domai 99.9 4E-22 8.8E-27 136.5 11.4 91 5-95 28-126 (146)
33 cd04027 C2B_Munc13 C2 domain s 99.9 1.1E-21 2.4E-26 132.1 12.8 89 6-94 1-101 (127)
34 cd04050 C2B_Synaptotagmin-like 99.9 1.5E-21 3.2E-26 127.3 12.6 87 7-96 1-89 (105)
35 cd04029 C2A_SLP-4_5 C2 domain 99.9 5.4E-22 1.2E-26 133.2 10.7 96 2-97 11-116 (125)
36 cd04043 C2_Munc13_fungal C2 do 99.9 3.8E-21 8.2E-26 129.2 14.7 115 7-157 2-121 (126)
37 cd08688 C2_KIAA0528-like C2 do 99.9 9.6E-22 2.1E-26 129.3 10.7 88 8-95 1-94 (110)
38 cd04010 C2B_RasA3 C2 domain se 99.9 9.3E-22 2E-26 135.3 10.6 89 7-96 1-110 (148)
39 cd08394 C2A_Munc13 C2 domain f 99.9 2.4E-21 5.3E-26 128.7 11.9 88 5-96 1-88 (127)
40 cd04017 C2D_Ferlin C2 domain f 99.9 4.4E-21 9.5E-26 130.5 13.5 119 7-159 2-134 (135)
41 cd08382 C2_Smurf-like C2 domai 99.9 3.9E-21 8.5E-26 128.8 12.9 89 7-96 1-93 (123)
42 cd08387 C2A_Synaptotagmin-8 C2 99.9 1.8E-21 3.9E-26 130.5 11.0 95 3-97 13-114 (124)
43 cd08393 C2A_SLP-1_2 C2 domain 99.9 8.4E-22 1.8E-26 132.3 9.3 93 4-96 13-115 (125)
44 cd04041 C2A_fungal C2 domain f 99.9 2E-21 4.3E-26 127.9 10.7 91 6-96 1-100 (111)
45 cd08385 C2A_Synaptotagmin-1-5- 99.9 4.3E-21 9.3E-26 128.7 11.7 95 3-97 13-114 (124)
46 cd04052 C2B_Tricalbin-like C2 99.9 7.5E-21 1.6E-25 125.2 12.3 100 23-159 10-111 (111)
47 cd04045 C2C_Tricalbin-like C2 99.9 1.5E-20 3.3E-25 125.3 13.4 91 6-96 1-93 (120)
48 cd04049 C2_putative_Elicitor-r 99.9 2.1E-20 4.5E-25 125.4 13.8 92 6-97 1-98 (124)
49 cd04032 C2_Perforin C2 domain 99.9 6.2E-21 1.3E-25 128.0 11.0 92 3-94 25-118 (127)
50 cd04031 C2A_RIM1alpha C2 domai 99.9 7.6E-21 1.6E-25 127.5 11.0 90 3-92 13-112 (125)
51 cd08685 C2_RGS-like C2 domain 99.9 4.3E-21 9.4E-26 127.7 9.5 93 4-96 10-110 (119)
52 cd08392 C2A_SLP-3 C2 domain fi 99.9 6.6E-21 1.4E-25 128.4 10.2 92 4-95 13-114 (128)
53 cd04030 C2C_KIAA1228 C2 domain 99.9 1.2E-20 2.6E-25 126.9 11.3 95 3-97 13-118 (127)
54 cd04051 C2_SRC2_like C2 domain 99.9 1E-20 2.2E-25 127.0 10.9 92 7-98 1-100 (125)
55 cd04011 C2B_Ferlin C2 domain s 99.9 1.2E-20 2.7E-25 124.2 10.9 89 6-97 4-97 (111)
56 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 8.4E-21 1.8E-25 132.7 10.0 92 4-95 25-126 (162)
57 cd08680 C2_Kibra C2 domain fou 99.8 1.6E-20 3.5E-25 125.6 10.6 93 3-95 11-113 (124)
58 cd04018 C2C_Ferlin C2 domain t 99.8 7.7E-20 1.7E-24 126.1 13.4 90 7-96 1-107 (151)
59 cd08388 C2A_Synaptotagmin-4-11 99.8 4.4E-20 9.5E-25 124.5 11.9 92 4-95 14-114 (128)
60 cd04013 C2_SynGAP_like C2 doma 99.8 9.1E-20 2E-24 124.7 13.5 90 4-97 9-103 (146)
61 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.5E-20 7.6E-25 124.4 10.7 94 4-97 14-115 (125)
62 cd08521 C2A_SLP C2 domain firs 99.8 3.9E-20 8.5E-25 123.7 10.6 94 3-96 11-114 (123)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 5.4E-20 1.2E-24 123.1 11.1 98 2-99 10-115 (123)
64 cd04021 C2_E3_ubiquitin_ligase 99.8 3.2E-19 7E-24 119.8 14.5 89 7-97 3-93 (125)
65 cd08676 C2A_Munc13-like C2 dom 99.8 7.6E-20 1.6E-24 126.3 11.4 89 2-94 24-143 (153)
66 cd04009 C2B_Munc13-like C2 dom 99.8 7.2E-20 1.6E-24 124.2 10.9 92 4-95 14-118 (133)
67 cd08389 C2A_Synaptotagmin-14_1 99.8 8.6E-20 1.9E-24 122.4 10.9 93 3-96 13-113 (124)
68 PLN03200 cellulose synthase-in 99.8 2.9E-20 6.2E-25 165.5 10.8 119 1-158 1975-2101(2102)
69 cd08690 C2_Freud-1 C2 domain f 99.8 4.7E-19 1E-23 122.3 14.6 90 8-97 4-111 (155)
70 cd04026 C2_PKC_alpha_gamma C2 99.8 8.3E-20 1.8E-24 123.5 10.5 90 6-95 13-110 (131)
71 cd04040 C2D_Tricalbin-like C2 99.8 1.7E-19 3.7E-24 119.3 11.5 90 8-97 1-93 (115)
72 cd08691 C2_NEDL1-like C2 domai 99.8 4.9E-19 1.1E-23 120.3 13.7 89 7-97 2-108 (137)
73 cd08675 C2B_RasGAP C2 domain s 99.8 1.2E-19 2.5E-24 123.7 10.1 89 8-96 1-109 (137)
74 cd08383 C2A_RasGAP C2 domain ( 99.8 4.9E-19 1.1E-23 117.4 11.7 80 8-90 2-85 (117)
75 cd04037 C2E_Ferlin C2 domain f 99.8 4.4E-19 9.5E-24 119.0 11.4 89 7-95 1-93 (124)
76 PLN03008 Phospholipase D delta 99.8 3.9E-19 8.4E-24 147.4 13.3 121 5-163 13-183 (868)
77 cd08406 C2B_Synaptotagmin-12 C 99.8 2.7E-19 5.9E-24 121.6 9.8 89 4-92 13-110 (136)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.8 3E-19 6.5E-24 121.1 9.5 90 3-92 10-108 (133)
79 cd08402 C2B_Synaptotagmin-1 C2 99.8 1.7E-19 3.7E-24 122.8 7.9 91 3-93 12-111 (136)
80 KOG0696 Serine/threonine prote 99.8 4E-20 8.7E-25 142.8 5.0 93 5-97 179-279 (683)
81 cd08407 C2B_Synaptotagmin-13 C 99.8 5.4E-19 1.2E-23 120.2 9.9 89 4-92 13-112 (138)
82 cd08408 C2B_Synaptotagmin-14_1 99.8 9.3E-19 2E-23 119.4 10.2 92 3-94 12-113 (138)
83 cd08404 C2B_Synaptotagmin-4 C2 99.8 9.8E-19 2.1E-23 119.0 10.3 89 4-92 13-110 (136)
84 cd00275 C2_PLC_like C2 domain 99.8 9.2E-18 2E-22 112.9 13.9 88 7-95 3-101 (128)
85 cd08405 C2B_Synaptotagmin-7 C2 99.8 2.4E-18 5.1E-23 117.2 10.3 91 3-93 12-111 (136)
86 cd08692 C2B_Tac2-N C2 domain s 99.8 2.5E-18 5.4E-23 115.8 10.2 90 4-93 12-110 (135)
87 cd00276 C2B_Synaptotagmin C2 d 99.8 7.3E-19 1.6E-23 119.1 7.7 89 4-92 12-109 (134)
88 cd04048 C2A_Copine C2 domain f 99.8 3.2E-18 6.9E-23 114.1 10.4 88 11-98 5-105 (120)
89 cd08410 C2B_Synaptotagmin-17 C 99.8 1.9E-18 4.2E-23 117.5 9.4 89 4-92 12-109 (135)
90 cd08403 C2B_Synaptotagmin-3-5- 99.8 2.9E-18 6.2E-23 116.5 9.5 90 3-92 11-109 (134)
91 cd04035 C2A_Rabphilin_Doc2 C2 99.8 7.4E-18 1.6E-22 112.8 10.8 95 3-98 12-116 (123)
92 KOG1028 Ca2+-dependent phospho 99.8 5.3E-18 1.2E-22 134.4 11.6 94 4-97 165-265 (421)
93 cd08409 C2B_Synaptotagmin-15 C 99.8 3.8E-18 8.3E-23 116.3 8.0 90 4-93 13-110 (137)
94 cd08686 C2_ABR C2 domain in th 99.8 1.4E-17 3E-22 109.4 9.9 80 8-92 1-92 (118)
95 KOG2059 Ras GTPase-activating 99.7 1.3E-17 2.9E-22 134.5 9.6 122 6-165 5-133 (800)
96 cd04047 C2B_Copine C2 domain s 99.7 5.2E-17 1.1E-21 106.6 9.6 86 10-96 4-101 (110)
97 PF00168 C2: C2 domain; Inter 99.7 8.9E-17 1.9E-21 100.0 9.0 80 8-87 1-85 (85)
98 KOG1011 Neurotransmitter relea 99.7 2.3E-17 4.9E-22 132.8 7.3 92 4-95 293-396 (1283)
99 smart00239 C2 Protein kinase C 99.6 1.5E-14 3.2E-19 92.2 10.5 90 8-97 2-96 (101)
100 cd00030 C2 C2 domain. The C2 d 99.6 2E-14 4.4E-19 91.2 10.8 87 8-94 1-90 (102)
101 PLN02223 phosphoinositide phos 99.6 6.3E-14 1.4E-18 112.4 13.1 94 6-99 409-514 (537)
102 cd08374 C2F_Ferlin C2 domain s 99.6 4.3E-14 9.4E-19 95.2 10.3 91 7-97 1-125 (133)
103 PLN02270 phospholipase D alpha 99.5 1E-13 2.2E-18 115.4 13.1 121 4-162 6-153 (808)
104 COG5038 Ca2+-dependent lipid-b 99.5 5.4E-13 1.2E-17 113.4 12.8 97 3-99 433-533 (1227)
105 KOG0169 Phosphoinositide-speci 99.5 3.8E-13 8.3E-18 110.2 10.5 93 7-99 617-721 (746)
106 PLN02230 phosphoinositide phos 99.5 7.7E-13 1.7E-17 107.9 11.8 95 5-99 468-575 (598)
107 KOG1028 Ca2+-dependent phospho 99.5 3.6E-13 7.7E-18 107.0 9.0 89 4-92 296-393 (421)
108 COG5038 Ca2+-dependent lipid-b 99.5 3.2E-13 7E-18 114.7 9.1 98 2-99 1036-1136(1227)
109 PLN02952 phosphoinositide phos 99.5 1.4E-12 2.9E-17 106.6 12.4 94 5-98 469-575 (599)
110 PLN02222 phosphoinositide phos 99.4 1.8E-12 4E-17 105.5 12.7 95 5-99 451-558 (581)
111 PLN02228 Phosphoinositide phos 99.4 4.6E-12 1E-16 102.9 12.6 94 6-99 431-538 (567)
112 KOG1031 Predicted Ca2+-depende 99.4 1.6E-12 3.4E-17 104.2 9.2 122 5-127 2-129 (1169)
113 KOG1264 Phospholipase C [Lipid 99.4 2.8E-12 6.1E-17 105.7 8.7 93 6-98 1065-1165(1267)
114 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.4E-11 2.9E-16 78.8 9.2 87 8-99 1-92 (109)
115 KOG1328 Synaptic vesicle prote 99.2 4.9E-12 1.1E-16 103.3 -0.2 116 5-159 113-302 (1103)
116 PLN02352 phospholipase D epsil 99.1 8.8E-10 1.9E-14 92.0 12.2 115 4-162 8-135 (758)
117 KOG1328 Synaptic vesicle prote 99.1 2.7E-11 5.8E-16 99.1 1.3 91 5-95 946-1049(1103)
118 KOG2059 Ras GTPase-activating 98.9 1.3E-09 2.8E-14 89.0 5.9 84 13-96 138-242 (800)
119 KOG1326 Membrane-associated pr 98.9 7.1E-10 1.5E-14 93.4 4.1 88 5-92 612-703 (1105)
120 PLN02964 phosphatidylserine de 98.7 3.4E-08 7.3E-13 81.9 6.9 91 1-97 49-141 (644)
121 KOG0905 Phosphoinositide 3-kin 98.7 2.5E-08 5.5E-13 85.6 4.5 93 5-97 1523-1625(1639)
122 KOG1011 Neurotransmitter relea 98.6 3.6E-07 7.7E-12 74.9 8.7 93 6-98 1125-1228(1283)
123 KOG1013 Synaptic vesicle prote 98.4 5.4E-07 1.2E-11 68.2 5.0 88 4-91 231-327 (362)
124 cd08683 C2_C2cd3 C2 domain fou 98.3 2.9E-06 6.2E-11 56.3 6.9 90 8-97 1-134 (143)
125 KOG2060 Rab3 effector RIM1 and 98.1 1.3E-06 2.8E-11 67.3 1.9 94 3-96 266-367 (405)
126 cd08684 C2A_Tac2-N C2 domain f 98.1 7.1E-06 1.5E-10 50.8 4.3 87 9-97 2-96 (103)
127 KOG1013 Synaptic vesicle prote 98.0 1.7E-06 3.6E-11 65.7 0.2 93 5-97 92-194 (362)
128 KOG1265 Phospholipase C [Lipid 97.9 6.2E-05 1.4E-09 63.9 8.3 88 5-99 702-800 (1189)
129 KOG1327 Copine [Signal transdu 97.9 3.3E-05 7.2E-10 62.5 6.3 83 12-95 142-236 (529)
130 KOG3837 Uncharacterized conser 97.8 1.9E-05 4.1E-10 61.8 4.0 92 8-99 369-479 (523)
131 KOG1326 Membrane-associated pr 97.8 2.3E-06 4.9E-11 72.9 -1.4 86 8-93 208-304 (1105)
132 PF15627 CEP76-C2: CEP76 C2 do 97.5 0.0055 1.2E-07 42.4 12.0 94 4-97 7-119 (156)
133 cd08693 C2_PI3K_class_I_beta_d 97.5 0.0021 4.6E-08 45.4 10.1 104 6-117 8-137 (173)
134 cd08398 C2_PI3K_class_I_alpha 97.5 0.0022 4.9E-08 44.6 9.8 101 6-116 8-122 (158)
135 cd08380 C2_PI3K_like C2 domain 97.4 0.0027 5.9E-08 44.0 9.2 104 6-116 8-123 (156)
136 cd08399 C2_PI3K_class_I_gamma 97.4 0.015 3.3E-07 41.2 12.8 105 6-117 10-139 (178)
137 cd08397 C2_PI3K_class_III C2 d 97.2 0.0033 7.2E-08 43.8 8.3 87 24-117 28-124 (159)
138 PF10358 NT-C2: N-terminal C2 97.1 0.046 9.9E-07 37.0 13.5 90 4-96 5-107 (143)
139 PF12416 DUF3668: Cep120 prote 97.0 0.016 3.4E-07 45.3 10.9 84 8-93 2-94 (340)
140 cd04012 C2A_PI3K_class_II C2 d 96.9 0.019 4.1E-07 40.5 9.8 106 4-116 6-135 (171)
141 KOG1452 Predicted Rho GTPase-a 96.8 0.0033 7.1E-08 48.0 5.2 92 3-95 48-143 (442)
142 cd08687 C2_PKN-like C2 domain 96.7 0.027 5.9E-07 35.3 8.3 63 26-93 9-72 (98)
143 PF00792 PI3K_C2: Phosphoinosi 96.2 0.062 1.3E-06 36.6 8.5 71 40-117 23-102 (142)
144 PF14429 DOCK-C2: C2 domain in 96.1 0.22 4.8E-06 35.4 11.2 70 38-114 60-135 (184)
145 cd08695 C2_Dock-B C2 domains f 95.9 0.14 3E-06 36.7 9.2 55 37-91 53-112 (189)
146 KOG1327 Copine [Signal transdu 95.0 0.13 2.9E-06 42.2 7.4 62 38-99 42-108 (529)
147 cd08694 C2_Dock-A C2 domains f 95.0 0.47 1E-05 34.1 9.4 55 37-91 53-114 (196)
148 PF07162 B9-C2: Ciliary basal 94.8 0.94 2E-05 31.8 13.7 135 9-157 5-167 (168)
149 smart00142 PI3K_C2 Phosphoinos 94.8 0.31 6.7E-06 31.1 7.4 68 8-75 13-91 (100)
150 PF15625 CC2D2AN-C2: CC2D2A N- 94.4 1.2 2.6E-05 31.3 12.1 70 25-95 36-108 (168)
151 PF11618 DUF3250: Protein of u 93.5 0.49 1.1E-05 30.7 6.3 67 29-97 2-77 (107)
152 cd08679 C2_DOCK180_related C2 93.1 1.3 2.8E-05 31.4 8.6 53 39-92 55-115 (178)
153 cd08696 C2_Dock-C C2 domains f 91.4 0.96 2.1E-05 32.2 6.2 56 37-92 54-118 (179)
154 KOG1329 Phospholipase D1 [Lipi 90.8 0.31 6.7E-06 42.4 3.7 72 26-97 138-211 (887)
155 cd08697 C2_Dock-D C2 domains f 90.5 1.5 3.3E-05 31.3 6.5 56 37-92 56-123 (185)
156 PTZ00447 apical membrane antig 89.3 9.4 0.0002 30.2 10.5 67 25-92 73-141 (508)
157 KOG0694 Serine/threonine prote 88.9 0.18 4E-06 42.5 1.0 69 25-94 27-96 (694)
158 KOG0904 Phosphatidylinositol 3 88.6 5.3 0.00011 35.2 9.2 101 7-116 344-472 (1076)
159 KOG2419 Phosphatidylserine dec 85.1 0.058 1.3E-06 45.2 -3.8 57 4-61 278-339 (975)
160 PF06219 DUF1005: Protein of u 80.1 30 0.00066 28.1 9.5 27 65-91 95-127 (460)
161 KOG3543 Ca2+-dependent activat 73.5 11 0.00023 32.3 5.6 82 7-90 342-426 (1218)
162 PF14909 SPATA6: Spermatogenes 65.4 41 0.00089 23.0 9.7 70 25-95 19-101 (140)
163 KOG0906 Phosphatidylinositol 3 59.3 8.8 0.00019 32.9 2.6 68 25-92 46-123 (843)
164 PF01060 DUF290: Transthyretin 52.6 32 0.00069 20.7 3.8 27 64-90 11-37 (80)
165 KOG4027 Uncharacterized conser 52.5 54 0.0012 23.0 5.1 42 50-91 64-109 (187)
166 KOG4269 Rac GTPase-activating 47.1 10 0.00022 33.7 1.2 83 4-91 757-854 (1112)
167 KOG4028 Uncharacterized conser 46.0 92 0.002 21.1 5.7 42 49-90 54-99 (175)
168 PF12416 DUF3668: Cep120 prote 44.9 1.6E+02 0.0034 23.4 7.3 88 5-97 191-297 (340)
169 PF10409 PTEN_C2: C2 domain of 36.4 1.2E+02 0.0027 19.8 10.2 87 7-94 5-98 (134)
170 PF14924 DUF4497: Protein of u 28.2 1.7E+02 0.0037 18.8 6.4 33 65-97 29-64 (112)
171 KOG1012 Ca2+-dependent lipid-b 23.5 94 0.002 20.3 2.7 50 28-77 70-120 (136)
172 PF10622 Ehbp: Energy-converti 21.0 90 0.002 18.7 1.9 55 28-92 3-60 (78)
173 PF09923 DUF2155: Uncharacteri 20.4 1.5E+02 0.0033 18.5 3.0 31 5-35 26-56 (90)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=206.54 Aligned_cols=165 Identities=61% Similarity=0.951 Sum_probs=157.2
Q ss_pred CCcccEEEEEEEEEeeCCCCCCC-CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031128 1 MENLMGLLRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL 79 (165)
Q Consensus 1 ~~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~ 79 (165)
|..+.|.|+|+|++|.+|...|. +++||||++.+++++.+|+++.++.||+|||.|.|.+.++...|+++|||+|.+++
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 67899999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEechhhhhhhccc--ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128 80 DDKMGDAEFYITPFLEALKMR--LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 157 (165)
Q Consensus 80 d~~iG~~~i~l~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 157 (165)
||++|.+.|+|..+.....+. ..+.+.|..+..+.+...++..+++.+.+..|++.++.+.++++.++|+++.+++|+
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~ 160 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI 160 (168)
T ss_pred ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence 999999999999999887765 247888999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 031128 158 DIPGSRGL 165 (165)
Q Consensus 158 ~~~~~~~~ 165 (165)
+.++..|+
T Consensus 161 ~~~~~~~~ 168 (168)
T KOG1030|consen 161 KLPGSVGL 168 (168)
T ss_pred cCcccccC
Confidence 99998875
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=100.00 E-value=3e-32 Score=186.91 Aligned_cols=144 Identities=61% Similarity=1.024 Sum_probs=136.1
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
.|.|.|+|++|++|+..+.+.+||||+++++++.++|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 48999999999999887777899999999999999999999999999999999999888777999999999999999999
Q ss_pred EEEEechhhhhhhccc-ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceee
Q 031128 85 DAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVG 148 (165)
Q Consensus 85 ~~~i~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G 148 (165)
++.+++.++.....+. +...+.|..+..|.|...|++++++++.+.+|++.++++++|+++++|
T Consensus 81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 9999999999988876 778889999999999999999999999999999999999999999987
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.96 E-value=1.3e-27 Score=159.09 Aligned_cols=115 Identities=18% Similarity=0.409 Sum_probs=98.9
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 83 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i 83 (165)
.|.|.|+|++|++++..+.+.+||||++.+++++++|+++.+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 379999999999887666789999999999999999999876 6999999999999976666799999999999999999
Q ss_pred EEEEEechh-hhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc----ceeeeEEEEEEE
Q 031128 84 GDAEFYITP-FLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN----VEVGEVKIQLEW 156 (165)
Q Consensus 84 G~~~i~l~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~G~l~l~l~~ 156 (165)
|.+.+++.. +..+.. .+.|++|.. ...|+|+|.|+|
T Consensus 81 G~~~i~l~~~~~~g~~-------------------------------------~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGET-------------------------------------LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCC-------------------------------------ccccEeCcCccCCCCceEEEEEEeC
Confidence 999999963 444321 288998876 457999999986
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.94 E-value=9.3e-26 Score=151.80 Aligned_cols=88 Identities=26% Similarity=0.528 Sum_probs=80.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC------CCCcEEEEEEeCCCCCCC
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD------SNLPIKLTVYDKDTFSLD 80 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~------~~~~l~i~v~d~~~~~~d 80 (165)
++|+|++|+||+..+ .+.+||||++.+++++++|++++++.||.|||.|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999888 7889999999999999999999999999999999999876 245699999999999899
Q ss_pred CeeEEEEEechhhhh
Q 031128 81 DKMGDAEFYITPFLE 95 (165)
Q Consensus 81 ~~iG~~~i~l~~l~~ 95 (165)
++||++.++++++..
T Consensus 81 ~~iG~~~i~l~~l~~ 95 (126)
T cd08682 81 KFLGQVSIPLNDLDE 95 (126)
T ss_pred ceeEEEEEEHHHhhc
Confidence 999999999998863
No 5
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.93 E-value=7.2e-25 Score=149.16 Aligned_cols=122 Identities=34% Similarity=0.543 Sum_probs=104.6
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLD 80 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d 80 (165)
..+|.|.|+|++|++|+..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+.... ..|.|+|||++.+++|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 46899999999999999988 889999999999999999999999999999999999997654 4599999999999899
Q ss_pred CeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128 81 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 156 (165)
Q Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 156 (165)
++||++.+++.++...... ..+. ...|+.+..+..|+|+|++++
T Consensus 92 ~~lG~~~i~l~~l~~~~~~------------------------------~~~~--~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKE------------------------------SKGP--ITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhcccccc------------------------------CCCc--EEEEeccccccceeEEEEEEe
Confidence 9999999999998763221 0111 155777888889999999875
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.93 E-value=5.1e-25 Score=147.22 Aligned_cols=115 Identities=32% Similarity=0.508 Sum_probs=100.9
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
.|+|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3789999999999888 78999999999987 578999999999999999999999776677999999999999999999
Q ss_pred EEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc----eeeeEEEEEEEEe
Q 031128 85 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWID 158 (165)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~ 158 (165)
++.+++.++..+... +.|++|.+. ..|+|+|.+++.|
T Consensus 81 ~~~~~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPT-------------------------------------EVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCCCe-------------------------------------EEEEECCCCCCccCceEEEEEEEECC
Confidence 999999998865433 677887643 3799999999876
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.93 E-value=6.8e-25 Score=145.50 Aligned_cols=113 Identities=28% Similarity=0.487 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG 84 (165)
.|+|+|++|++|+..+ .+.+||||+++++++.++|++++++.||.|||.|.|.+..+ ...|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999988 78899999999999999999999999999999999998765 456999999999998999999
Q ss_pred EEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128 85 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 157 (165)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 157 (165)
++.++++++..+... +.|++|... .|+++++++|+
T Consensus 81 ~~~~~l~~l~~~~~~-------------------------------------~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTH-------------------------------------SLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCce-------------------------------------EEEEEccCC-CcEEEEEEEec
Confidence 999999987764332 899999864 69999999885
No 8
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.93 E-value=6.1e-25 Score=146.60 Aligned_cols=113 Identities=31% Similarity=0.652 Sum_probs=100.4
Q ss_pred EEEEEEEEEeeCCCCCCC-------CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCC
Q 031128 6 GLLRVHVLRGVNLAVRDV-------VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTF 77 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~ 77 (165)
|.|.|+|++|++|+..+. +.+||||+++++++.++|++++++.+|.|||.|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998762 5789999999999999999999999999999999998753 45699999999988
Q ss_pred CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128 78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 156 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 156 (165)
++++||.+.+++.++..+... +.|++|.+..+|+|+++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~-------------------------------------~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI-------------------------------------DEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc-------------------------------------ceEEECcCCCCceEEEEEeC
Confidence 899999999999988764322 89999998889999999987
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.93 E-value=7.2e-25 Score=146.84 Aligned_cols=91 Identities=27% Similarity=0.471 Sum_probs=82.9
Q ss_pred EEEEEEEEeeC---CCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC----
Q 031128 7 LLRVHVLRGVN---LAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS---- 78 (165)
Q Consensus 7 ~L~V~v~~a~~---L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~---- 78 (165)
.|.|+|++|+| |+.++ .|.+||||++++++++.+|++++++.||+|||+|.|.+.++...|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 77777 88999999999999999999999999999999999999877778999999998874
Q ss_pred --CCCeeEEEEEechhhhhhh
Q 031128 79 --LDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 79 --~d~~iG~~~i~l~~l~~~~ 97 (165)
+|++||++.+++..+..+.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~ 101 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR 101 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC
Confidence 8999999999999887644
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.93 E-value=7.3e-25 Score=145.76 Aligned_cols=113 Identities=31% Similarity=0.537 Sum_probs=96.9
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~ 82 (165)
|.|.|+|++|++|+..+ .+.+||||++.+++..++|+++.+ +.||.|||.|.|.+..+. ..|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 68999999999999988 788999999999999999998765 689999999999997643 55999999999875 999
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc--eeeeEEEEEEE
Q 031128 83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV--EVGEVKIQLEW 156 (165)
Q Consensus 83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~l~l~l~~ 156 (165)
||++.+++.++..+... +.|++|... .+|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~-------------------------------------~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEF-------------------------------------DDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCC-------------------------------------CCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998764322 677777643 58999999986
No 11
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.92 E-value=2.5e-24 Score=144.99 Aligned_cols=88 Identities=31% Similarity=0.478 Sum_probs=80.1
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCCCC-CC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDTFS-LD 80 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~-~d 80 (165)
+|.|+|++|++|+..+ .+.+||||++.+++++++|+++.++.||.|||.|.|.+..+. ..|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999888 788999999999999999999999999999999999987542 35999999999886 89
Q ss_pred CeeEEEEEechhhh
Q 031128 81 DKMGDAEFYITPFL 94 (165)
Q Consensus 81 ~~iG~~~i~l~~l~ 94 (165)
++||++.++++++.
T Consensus 81 ~~lG~v~i~l~~l~ 94 (127)
T cd04022 81 SFLGRVRISGTSFV 94 (127)
T ss_pred CeeeEEEEcHHHcC
Confidence 99999999999886
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.92 E-value=6.3e-24 Score=142.87 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=98.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEEC--CeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEE
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG--KQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 85 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~--~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~ 85 (165)
|.|+|++|++|+. ..+.+||||++.++ .++++|++++++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 66889999999997 35789999999999999999999996555679999999999989999999
Q ss_pred EEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc------ceeeeEEEEEEEEeC
Q 031128 86 AEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEWIDI 159 (165)
Q Consensus 86 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~~~~ 159 (165)
+.+++.++...... ..|++|.. ...|+|+++++|.+.
T Consensus 80 ~~i~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 80 AIVPFDELRKNPSG-------------------------------------RQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEeHHHhccCCce-------------------------------------eEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 99999998875432 45566653 258999999999876
Q ss_pred C
Q 031128 160 P 160 (165)
Q Consensus 160 ~ 160 (165)
+
T Consensus 123 ~ 123 (126)
T cd08678 123 A 123 (126)
T ss_pred c
Confidence 5
No 13
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.92 E-value=5.4e-24 Score=143.40 Aligned_cols=117 Identities=33% Similarity=0.647 Sum_probs=98.8
Q ss_pred EEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCC
Q 031128 6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDD 81 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~~~~d~ 81 (165)
|.|+|+|++|++|+..+ .+.+||||++.++.+.++|++++++.||.|||.|.|.+.. ....|.|+|||++.+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 68999999999999876 4689999999999999999999999999999999999986 3566999999999998999
Q ss_pred eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-------eeeeEEEEE
Q 031128 82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-------EVGEVKIQL 154 (165)
Q Consensus 82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-------~~G~l~l~l 154 (165)
+||++.+++.++...... + ..+.|++|... .+|+|+|++
T Consensus 81 ~lG~~~i~l~~~~~~~~~--------------------------------~--~~~~w~~L~~~~~~~~~~~~G~i~l~~ 126 (128)
T cd04024 81 YLGEFDIALEEVFADGKT--------------------------------G--QSDKWITLKSTRPGKTSVVSGEIHLQF 126 (128)
T ss_pred cceEEEEEHHHhhccccc--------------------------------C--ccceeEEccCcccCccccccceEEEEE
Confidence 999999999998742110 0 12567777654 489999999
Q ss_pred EE
Q 031128 155 EW 156 (165)
Q Consensus 155 ~~ 156 (165)
+|
T Consensus 127 ~~ 128 (128)
T cd04024 127 SW 128 (128)
T ss_pred EC
Confidence 87
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.92 E-value=6.7e-24 Score=141.75 Aligned_cols=89 Identities=19% Similarity=0.374 Sum_probs=79.7
Q ss_pred EEEEEEEeeCCCCCC--CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 8 L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
|.|+|++|+||+..+ .+.+||||.+.++++ .++|++++++.||.|||+|.|.+......|.|.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999874 578899999999865 57999999999999999999999765567999999999999999999
Q ss_pred EEEEechhhhhh
Q 031128 85 DAEFYITPFLEA 96 (165)
Q Consensus 85 ~~~i~l~~l~~~ 96 (165)
.+.++++++...
T Consensus 82 ~~~i~l~~l~~~ 93 (121)
T cd08401 82 KVAIKKEDLHKY 93 (121)
T ss_pred EEEEEHHHccCC
Confidence 999999988753
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.92 E-value=6.3e-24 Score=141.51 Aligned_cols=111 Identities=29% Similarity=0.486 Sum_probs=97.1
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~ 82 (165)
|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+.... ..|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999888 7889999999986 35789999999999999999999987543 3489999999998 8999
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128 83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 156 (165)
Q Consensus 83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 156 (165)
||++.+++.++..+... +.|++|...++|+++++++.
T Consensus 81 iG~~~~~l~~l~~g~~~-------------------------------------~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKV-------------------------------------RVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcE-------------------------------------EEEEECCCCCCceEEEEEEe
Confidence 99999999988765433 88999998889999998864
No 16
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.91 E-value=1.4e-23 Score=140.59 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=99.5
Q ss_pred cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC--eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCC
Q 031128 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK--QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLD 80 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~--~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d 80 (165)
+|.|.|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.+|.|||.|.|.+......|.|+|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 589999999999999655 45789999999987 78899999999999999999999885566799999999998899
Q ss_pred CeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEe
Q 031128 81 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID 158 (165)
Q Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~ 158 (165)
++||.+.+++.++..+.... . ....+...+...|+|++.++|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~-------------------------------~---~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE-------------------------------N---LTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcccc-------------------------------C---cchhhhcCCccceEEEEEEEeCC
Confidence 99999999999988754320 0 01112334556899999999987
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=1.8e-23 Score=144.35 Aligned_cols=89 Identities=28% Similarity=0.417 Sum_probs=80.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCee
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKM 83 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~i 83 (165)
.|.|+|++|++|+..+ .+.+||||++.++++.++|+++.+ +.||.|||.|.|.+.++. ..+.|+|||++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3889999999999988 789999999999999999999977 599999999999997654 4699999999988889999
Q ss_pred EEEEEechhhhh
Q 031128 84 GDAEFYITPFLE 95 (165)
Q Consensus 84 G~~~i~l~~l~~ 95 (165)
|++.++|+++..
T Consensus 81 G~v~i~L~~l~~ 92 (150)
T cd04019 81 GRAVIPLNDIER 92 (150)
T ss_pred EEEEEEHHHCcc
Confidence 999999998865
No 18
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.91 E-value=3.2e-23 Score=137.97 Aligned_cols=90 Identities=31% Similarity=0.546 Sum_probs=82.8
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
|.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 68999999999999888 77899999999999889999999999999999999998765677999999999988999999
Q ss_pred EEEEechhhhh
Q 031128 85 DAEFYITPFLE 95 (165)
Q Consensus 85 ~~~i~l~~l~~ 95 (165)
++.+++.++..
T Consensus 81 ~~~~~l~~~~~ 91 (119)
T cd08377 81 KVAIPLLSIKN 91 (119)
T ss_pred EEEEEHHHCCC
Confidence 99999988754
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.90 E-value=7.6e-23 Score=136.70 Aligned_cols=88 Identities=30% Similarity=0.529 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEE
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 85 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~ 85 (165)
|.|+|++|++|+..+ .+.+||||++.+++. ..+|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999988 889999999999875 469999999999999999999987666679999999999999999999
Q ss_pred EEEechhhhh
Q 031128 86 AEFYITPFLE 95 (165)
Q Consensus 86 ~~i~l~~l~~ 95 (165)
+.++++.+..
T Consensus 82 ~~~~~~~~~~ 91 (121)
T cd04054 82 VSLTREVISA 91 (121)
T ss_pred EEEcHHHhcc
Confidence 9999887754
No 20
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.90 E-value=8.8e-23 Score=142.18 Aligned_cols=115 Identities=24% Similarity=0.440 Sum_probs=97.0
Q ss_pred cEEEEEEEEEeeCCCCCC-------------------------------CCCCCcEEEEEECCeE-EecccccCCCCCeE
Q 031128 5 MGLLRVHVLRGVNLAVRD-------------------------------VVSSDPYVVIKMGKQK-LKTRVVKNNVNPEW 52 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w 52 (165)
.|.|.|+|.+|++|+.++ .+.+||||++++++.. .+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999865 3457999999999755 59999999999999
Q ss_pred ecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCC
Q 031128 53 NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDG 132 (165)
Q Consensus 53 ~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 132 (165)
||+|.|.+......|.|+|||++.+ ++++||++.++++++..+...
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~--------------------------------- 131 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPV--------------------------------- 131 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCc---------------------------------
Confidence 9999999877667799999999988 468999999999988764322
Q ss_pred cEEeeeeeeeccc------eeeeEEEEEEEE
Q 031128 133 KLVQNLFLRLRNV------EVGEVKIQLEWI 157 (165)
Q Consensus 133 ~~~~~~~~~l~~~------~~G~l~l~l~~~ 157 (165)
+.|++|.+. ..|+|+|+++|.
T Consensus 132 ----~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 132 ----EGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ----ceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 778887542 268999999984
No 21
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.90 E-value=1.6e-22 Score=136.02 Aligned_cols=114 Identities=19% Similarity=0.394 Sum_probs=93.7
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~ 82 (165)
...|+|+|++|++|+..+ .+||||++.+++. ..+|++. ++.||.|||.|.|.+..+. ..+.|.|||++.+++|++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 467999999999998754 6899999999874 4688874 5899999999999876554 458999999999999999
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc------eeeeEEEEEEE
Q 031128 83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV------EVGEVKIQLEW 156 (165)
Q Consensus 83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~l~l~l~~ 156 (165)
||.+.++|+++..+... +.|++|... ..|+|+|.++|
T Consensus 80 iG~v~i~l~~l~~~~~~-------------------------------------~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 80 IAEVTVQLSKLQNGQET-------------------------------------DEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred EEEEEEEHhHccCCCcc-------------------------------------cEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 99999999987663322 677777543 35999999999
Q ss_pred Ee
Q 031128 157 ID 158 (165)
Q Consensus 157 ~~ 158 (165)
.+
T Consensus 123 ~~ 124 (126)
T cd08400 123 SH 124 (126)
T ss_pred Ec
Confidence 75
No 22
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.90 E-value=1.9e-22 Score=135.80 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=99.6
Q ss_pred EEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCCeeEEEEE
Q 031128 12 VLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKMGDAEF 88 (165)
Q Consensus 12 v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~~d~~iG~~~i 88 (165)
|++|++|+. ..+.+||||++.+++.+++|++++++.||.|||.|.|.+... ...|.|+|||++..++|++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 689999988 667899999999999999999999999999999999999653 4569999999999989999999999
Q ss_pred echhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc----eeeeEEEEEEEEeCCCCCC
Q 031128 89 YITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWIDIPGSRG 164 (165)
Q Consensus 89 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~~~~~~~ 164 (165)
++.++..+... ..|++|.+. ..|+|++.++|.|.++..|
T Consensus 81 ~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 81 SLQDLVSEGLL-------------------------------------EVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EhhHcccCCce-------------------------------------EEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 99988764332 667777533 2689999999999998876
Q ss_pred C
Q 031128 165 L 165 (165)
Q Consensus 165 ~ 165 (165)
+
T Consensus 124 ~ 124 (127)
T cd08373 124 G 124 (127)
T ss_pred C
Confidence 4
No 23
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.90 E-value=1.4e-22 Score=135.76 Aligned_cols=90 Identities=36% Similarity=0.565 Sum_probs=82.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG 84 (165)
+|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+.... ..|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999888 678999999999999999999999999999999999997654 45999999999998999999
Q ss_pred EEEEechhhhhh
Q 031128 85 DAEFYITPFLEA 96 (165)
Q Consensus 85 ~~~i~l~~l~~~ 96 (165)
++.++++++...
T Consensus 81 ~~~~~l~~l~~~ 92 (123)
T cd04025 81 KVVFSIQTLQQA 92 (123)
T ss_pred EEEEEHHHcccC
Confidence 999999988653
No 24
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.90 E-value=9.5e-23 Score=138.27 Aligned_cols=120 Identities=26% Similarity=0.486 Sum_probs=98.1
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-------KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 78 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~ 78 (165)
.|+|+|++|++|+..+ .+.+||||++.+.+. .++|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 4899999999999988 788999999999754 57899999999999999999998765667999999999999
Q ss_pred CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-----eeeeEEEE
Q 031128 79 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-----EVGEVKIQ 153 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~l~l~ 153 (165)
++++||++.+++.++....... .......|++|+.. ..|+|++.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~G~l~~~ 129 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGN-------------------------------ERRYTFKDYLLRPRSSKSRVKGHLRLY 129 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccc-------------------------------cccccchheeeeecCCCCcceeEEEEE
Confidence 9999999999999887643210 00123667777642 48999999
Q ss_pred EEEE
Q 031128 154 LEWI 157 (165)
Q Consensus 154 l~~~ 157 (165)
++|+
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9874
No 25
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.90 E-value=2e-22 Score=136.55 Aligned_cols=116 Identities=22% Similarity=0.402 Sum_probs=98.9
Q ss_pred cEEEEEEEEEeeCCCCCCC-----------CCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCCCcEEEEEE
Q 031128 5 MGLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY 72 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~ 72 (165)
.|.|+|+|++|++|...+. +.+||||++.++++. .+|+++.++.+|.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 5899999999999987773 578999999999765 58999999999999999999996 4566999999
Q ss_pred eCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEE
Q 031128 73 DKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKI 152 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l 152 (165)
|++.++++++||++.++|+++..... -..+.|++|. +.|+|+|
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~-----------------------------------~~~~~w~~L~--~~G~l~l 124 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGS-----------------------------------GSFDLWVDLE--PQGKLHV 124 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCC-----------------------------------CcccEEEEcc--CCcEEEE
Confidence 99988899999999999998876310 0128899997 7899999
Q ss_pred EEEEEe
Q 031128 153 QLEWID 158 (165)
Q Consensus 153 ~l~~~~ 158 (165)
+++|..
T Consensus 125 ~~~~~~ 130 (132)
T cd04014 125 KIELKG 130 (132)
T ss_pred EEEEec
Confidence 999864
No 26
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.90 E-value=7.7e-23 Score=135.92 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=78.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----C--eEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----K--QKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD 75 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~--~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~ 75 (165)
.|+|+|++|++|+..+.|.+||||++++. . ++++|+++.++.||+|||+|.|.+.... ..|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 48999999999988778889999999973 2 3568999999999999999999997432 24899999999
Q ss_pred CCCCCCeeEEEEEechhhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
..+++++||++.+++.++..+.
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~ 102 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG 102 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC
Confidence 8888999999999999888654
No 27
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.90 E-value=3.1e-22 Score=134.60 Aligned_cols=89 Identities=26% Similarity=0.451 Sum_probs=81.6
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~ 82 (165)
|...|+|+|++|++|...+ .+.+||||++.++++.++|++++++.||.|||.|.|.+......|.|+|||++.+ +|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 4578999999999999888 7899999999999999999999999999999999999877777799999999987 5899
Q ss_pred eEEEEEechhh
Q 031128 83 MGDAEFYITPF 93 (165)
Q Consensus 83 iG~~~i~l~~l 93 (165)
||.+.+++.+.
T Consensus 80 lG~~~~~l~~~ 90 (126)
T cd04046 80 LGQATLSADPN 90 (126)
T ss_pred eEEEEEecccC
Confidence 99999999764
No 28
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.89 E-value=9.3e-23 Score=136.39 Aligned_cols=92 Identities=26% Similarity=0.346 Sum_probs=80.8
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD 75 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d~~ 75 (165)
.+.|.|+|++|++|+..+.+.+||||++++. ..+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 4789999999999998887789999999996 347899999999999999999998722 2345999999999
Q ss_pred CCCCCCeeEEEEEechhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~ 96 (165)
.++++++||++.++|.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 999999999999999988754
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.89 E-value=1.1e-22 Score=133.93 Aligned_cols=92 Identities=17% Similarity=0.303 Sum_probs=79.4
Q ss_pred cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 75 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~ 75 (165)
...+.|.|+|++|++|+ . .+.+||||++++.. .+.+|++.+++.||+|||+|.|.+... ...|.|+|||+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 35689999999999998 3 35689999999963 577999999999999999999998653 245999999999
Q ss_pred CCCCCCeeEEEEEechhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~ 96 (165)
+++++++||++.++++++...
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred CCCCCceEEEEEEccccccCC
Confidence 999999999999999876443
No 30
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.89 E-value=2.1e-22 Score=134.53 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=93.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeEEE
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDA 86 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG~~ 86 (165)
|.|+|++|++|+.. .+||||++.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999887 689999999999999999999999999999999998764 45599999999987 89999999
Q ss_pred EEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce----eeeEEEEEEE
Q 031128 87 EFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VGEVKIQLEW 156 (165)
Q Consensus 87 ~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G~l~l~l~~ 156 (165)
.++++++...... .+ -..+.|++|.... +|+|+|.+.|
T Consensus 78 ~i~l~~l~~~~~~------~~--------------------------~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVPP------DS--------------------------PLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCCC------CC--------------------------CCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999987642210 00 0126788887654 6999999976
No 31
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.89 E-value=3.6e-22 Score=130.74 Aligned_cols=94 Identities=24% Similarity=0.489 Sum_probs=83.5
Q ss_pred EEEEEEEEEeeCCCCCC-C----CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCCC
Q 031128 6 GLLRVHVLRGVNLAVRD-V----VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTFS 78 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~----~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~~~ 78 (165)
|.|.|+|++|++|+..+ . +.+||||+++++++.++|++++++.||+|||.|.|.+.... ..|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999875 1 35899999999999999999999999999999999986543 35899999999999
Q ss_pred CCCeeEEEEEechhhhhhhcc
Q 031128 79 LDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+|++||++.++|+++..+...
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999886543
No 32
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=4e-22 Score=136.53 Aligned_cols=91 Identities=23% Similarity=0.395 Sum_probs=79.8
Q ss_pred cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEE-eCCC
Q 031128 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKDT 76 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~-d~~~ 76 (165)
.|.|.|+|++|+||++.+ .+.+||||++++.. .+++|++++++.||+|||+|.|.+...+..|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999998864 67899999999952 377999999999999999999999855567999999 6888
Q ss_pred CCCCCeeEEEEEechhhhh
Q 031128 77 FSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 77 ~~~d~~iG~~~i~l~~l~~ 95 (165)
++++++||++.|+|+++..
T Consensus 108 ~~~~~~iG~~~i~L~~l~~ 126 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDL 126 (146)
T ss_pred CCCCceEEEEEEEcccccC
Confidence 8899999999999998754
No 33
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.88 E-value=1.1e-21 Score=132.09 Aligned_cols=89 Identities=30% Similarity=0.545 Sum_probs=79.2
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-------
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF------- 77 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~------- 77 (165)
+.|+|+|++|++|+..+ .+.+||||++.+++..++|+++.++.+|.|||.|.|.+..+...|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 36899999999999988 7889999999999889999999999999999999999876666799999999852
Q ss_pred ----CCCCeeEEEEEechhhh
Q 031128 78 ----SLDDKMGDAEFYITPFL 94 (165)
Q Consensus 78 ----~~d~~iG~~~i~l~~l~ 94 (165)
+++++||.+.+++.++.
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred eccccCCCcceEEEEEhHHcc
Confidence 47999999999998753
No 34
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.88 E-value=1.5e-21 Score=127.35 Aligned_cols=87 Identities=25% Similarity=0.471 Sum_probs=79.2
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG 84 (165)
.|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.||.|||.|.|.+..+. ..|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3889999999999887 788999999999999999999999999999999999998754 459999999885 88999
Q ss_pred EEEEechhhhhh
Q 031128 85 DAEFYITPFLEA 96 (165)
Q Consensus 85 ~~~i~l~~l~~~ 96 (165)
++.++|.++...
T Consensus 78 ~~~i~l~~l~~~ 89 (105)
T cd04050 78 SLTLPLSELLKE 89 (105)
T ss_pred EEEEEHHHhhcc
Confidence 999999998764
No 35
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.88 E-value=5.4e-22 Score=133.24 Aligned_cols=96 Identities=32% Similarity=0.417 Sum_probs=82.7
Q ss_pred CcccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEE
Q 031128 2 ENLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTV 71 (165)
Q Consensus 2 ~~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v 71 (165)
+...+.|.|+|++|+||+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 346789999999999999876 4789999999985 2357999999999999999999998653 34599999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
||++.++++++||++.+++.++....
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~ 116 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDS 116 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccC
Confidence 99999999999999999999876643
No 36
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.88 E-value=3.8e-21 Score=129.23 Aligned_cols=115 Identities=27% Similarity=0.454 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD 81 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~ 81 (165)
.|+|+|++|++|+..+ .+.+||||++.+.+ ..++|++++++.||.|||+|.|.+... ...|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999988 78899999999764 367999999999999999999999764 355999999999988999
Q ss_pred eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128 82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 157 (165)
Q Consensus 82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 157 (165)
+||++.++|.++..... | ...+.|++|. ++|++++++.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~---------------------------------~-~~~~~w~~l~--~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDD---------------------------------G-LPREIWLDLD--TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCC---------------------------------C-CCceEEEEcC--CCCeEEEEEEEe
Confidence 99999999987654210 0 1137899997 489999998764
No 37
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.87 E-value=9.6e-22 Score=129.25 Aligned_cols=88 Identities=34% Similarity=0.623 Sum_probs=80.4
Q ss_pred EEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEecccccCCCCCeE-ecEEEEEEeCC---CCcEEEEEEeCCCCCCCC
Q 031128 8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQKLKTRVVKNNVNPEW-NEDLTLSISDS---NLPIKLTVYDKDTFSLDD 81 (165)
Q Consensus 8 L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w-~e~f~f~~~~~---~~~l~i~v~d~~~~~~d~ 81 (165)
|.|+|++|++|+..+ .+.+||||+++++++.++|++++++.||.| ||.|.|.+... +..|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 689999999999876 578999999999999999999999999999 99999998754 256999999999999999
Q ss_pred eeEEEEEechhhhh
Q 031128 82 KMGDAEFYITPFLE 95 (165)
Q Consensus 82 ~iG~~~i~l~~l~~ 95 (165)
+||++.+++.++..
T Consensus 81 ~iG~~~~~l~~l~~ 94 (110)
T cd08688 81 AIGKVYIDLNPLLL 94 (110)
T ss_pred ceEEEEEeHHHhcc
Confidence 99999999999877
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.87 E-value=9.3e-22 Score=135.33 Aligned_cols=89 Identities=19% Similarity=0.319 Sum_probs=77.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC-----------C-----CC
Q 031128 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD-----------S-----NL 65 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~-----------~-----~~ 65 (165)
.|.|+|++|++|+. ..|.+||||++.+.. .+.+|++++++.||+|||.|.|.+.. + ..
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999988 557899999999975 57799999999999999999999851 1 13
Q ss_pred cEEEEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128 66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 66 ~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
.|.|.|||++.+++|+|||++.|++..+..+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 4899999999988999999999999988764
No 39
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.87 E-value=2.4e-21 Score=128.72 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=78.8
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
++.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||.|.|.+.+.+..|.|+|||++.+ +|++||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 468999999999997654 4589999999999999999987 499999999999987777799999999976 999999
Q ss_pred EEEEechhhhhh
Q 031128 85 DAEFYITPFLEA 96 (165)
Q Consensus 85 ~~~i~l~~l~~~ 96 (165)
++.|+|+++..+
T Consensus 77 ~v~i~L~~v~~~ 88 (127)
T cd08394 77 TVWIPLSTIRQS 88 (127)
T ss_pred EEEEEhHHcccC
Confidence 999999998764
No 40
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.87 E-value=4.4e-21 Score=130.50 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=94.8
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC----------CCcEEEEEEeCC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS----------NLPIKLTVYDKD 75 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~----------~~~l~i~v~d~~ 75 (165)
.|+|+|++|++|+..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999988 78999999999999999999999999999999999975321 134899999999
Q ss_pred CCCCCCeeEEEEEe-chhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc--eeeeEEE
Q 031128 76 TFSLDDKMGDAEFY-ITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV--EVGEVKI 152 (165)
Q Consensus 76 ~~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~l~l 152 (165)
..++|++||++.+. +..+.... .+ -....|++|... ..|+|.|
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~--------~~--------------------------~~~~~W~~L~~~~~~~Geil~ 127 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE--------DF--------------------------PPKLQWFPIYKGGQSAGELLA 127 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC--------CC--------------------------CCCceEEEeecCCCchhheeE
Confidence 99899999999874 32222110 00 112678887643 4899999
Q ss_pred EEEEEeC
Q 031128 153 QLEWIDI 159 (165)
Q Consensus 153 ~l~~~~~ 159 (165)
.++++++
T Consensus 128 ~~~~~~~ 134 (135)
T cd04017 128 AFELIEV 134 (135)
T ss_pred EeEEEEe
Confidence 9999875
No 41
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.87 E-value=3.9e-21 Score=128.76 Aligned_cols=89 Identities=29% Similarity=0.491 Sum_probs=79.9
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC--CCe
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-KQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL--DDK 82 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~--d~~ 82 (165)
.|+|+|++|++|+..+ .+.+||||++.++ .+.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++ |++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 3789999999999888 7899999999996 678899999999999999999999965 6679999999998865 589
Q ss_pred eEEEEEechhhhhh
Q 031128 83 MGDAEFYITPFLEA 96 (165)
Q Consensus 83 iG~~~i~l~~l~~~ 96 (165)
||++.+++.++...
T Consensus 80 lG~~~i~l~~l~~~ 93 (123)
T cd08382 80 LGCVRIRANAVLPL 93 (123)
T ss_pred EeEEEEEHHHcccc
Confidence 99999999998763
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.87 E-value=1.8e-21 Score=130.53 Aligned_cols=95 Identities=25% Similarity=0.483 Sum_probs=83.5
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 75 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~ 75 (165)
...|.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 45789999999999999888 7889999999984 3568999999999999999999998653 346999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.++++++||++.++++++..+.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSE 114 (124)
T ss_pred CCCCCceeEEEEEecccccCCC
Confidence 9989999999999999887543
No 43
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.87 E-value=8.4e-22 Score=132.34 Aligned_cols=93 Identities=29% Similarity=0.437 Sum_probs=81.1
Q ss_pred ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
..+.|.|+|++|+||++.+ . +.+||||++++. ..+++|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 4578999999999999988 4 789999999985 2457999999999999999999998642 3469999999
Q ss_pred CCCCCCCCeeEEEEEechhhhhh
Q 031128 74 KDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
++.++++++||++.++|.++...
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccC
Confidence 99999999999999999987553
No 44
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.87 E-value=2e-21 Score=127.94 Aligned_cols=91 Identities=30% Similarity=0.575 Sum_probs=81.0
Q ss_pred EEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCC
Q 031128 6 GLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDT 76 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~~ 76 (165)
|.|.|+|++|++|+..+ . +.+||||++++. ...++|++++++.||.|||.|.|.+... ...|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 68999999999999888 5 899999999985 3467999999999999999999988653 3469999999999
Q ss_pred CCCCCeeEEEEEechhhhhh
Q 031128 77 FSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 77 ~~~d~~iG~~~i~l~~l~~~ 96 (165)
+++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999853
No 45
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=4.3e-21 Score=128.66 Aligned_cols=95 Identities=29% Similarity=0.437 Sum_probs=82.4
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 75 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~ 75 (165)
...+.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 35689999999999999888 7789999999985 3467999999999999999999998642 346999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.++++++||++.++++++..+.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~ 114 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGH 114 (124)
T ss_pred CCCCCceeEEEEEecCcccCCC
Confidence 9989999999999999875533
No 46
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=7.5e-21 Score=125.19 Aligned_cols=100 Identities=20% Similarity=0.388 Sum_probs=86.9
Q ss_pred CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhccc
Q 031128 23 VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR 100 (165)
Q Consensus 23 ~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 100 (165)
.|.+||||++.++++ ..+|++++++.||.|||.|.|.+.++. ..|.|+|||++.+ ++++||.+.++|+++......
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~- 87 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV- 87 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc-
Confidence 678999999999874 579999999999999999999997654 4599999999999 999999999999998653211
Q ss_pred ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEeC
Q 031128 101 LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 159 (165)
Q Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~ 159 (165)
.+.|++|.+.+.|+|+++++|.|.
T Consensus 88 -----------------------------------~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 -----------------------------------GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred -----------------------------------cceeEECCCCCCCEEEEEEEEecC
Confidence 278999998889999999999985
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=1.5e-20 Score=125.34 Aligned_cols=91 Identities=29% Similarity=0.523 Sum_probs=83.4
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 83 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i 83 (165)
|.|.|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+..+...|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999988 78999999999976 56899999999999999999999877767899999999999999999
Q ss_pred EEEEEechhhhhh
Q 031128 84 GDAEFYITPFLEA 96 (165)
Q Consensus 84 G~~~i~l~~l~~~ 96 (165)
|++.+++.++..+
T Consensus 81 G~~~~~l~~l~~~ 93 (120)
T cd04045 81 GSVEINVSDLIKK 93 (120)
T ss_pred eEEEEeHHHhhCC
Confidence 9999999998875
No 48
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.86 E-value=2.1e-20 Score=125.35 Aligned_cols=92 Identities=34% Similarity=0.562 Sum_probs=83.2
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCCC
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFSL 79 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~~~~~ 79 (165)
|.|.|+|++|++|+..+ .+.+||||+++++++.++|++..+ +.||.|||.|.|.+..+ ...|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 68999999999999887 778999999999998899998875 89999999999999876 3569999999999989
Q ss_pred CCeeEEEEEechhhhhhh
Q 031128 80 DDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 80 d~~iG~~~i~l~~l~~~~ 97 (165)
+++||++.+++.++..+.
T Consensus 81 d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCeEEEEEEEhHHhhhCC
Confidence 999999999999998744
No 49
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.86 E-value=6.2e-21 Score=127.97 Aligned_cols=92 Identities=28% Similarity=0.387 Sum_probs=81.0
Q ss_pred cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD 80 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~--~~~~l~i~v~d~~~~~~d 80 (165)
..+|.|.|+|++|++|+....+.+||||+++++++.++|++++++.||+|||+|.|.... ....|.|+|||++.+++|
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 456999999999999985337789999999999999999999999999999999997533 345699999999999999
Q ss_pred CeeEEEEEechhhh
Q 031128 81 DKMGDAEFYITPFL 94 (165)
Q Consensus 81 ~~iG~~~i~l~~l~ 94 (165)
++||++.++|....
T Consensus 105 d~IG~~~i~l~~~~ 118 (127)
T cd04032 105 DLLGTCSVVPEAGV 118 (127)
T ss_pred CeeEEEEEEecCCc
Confidence 99999999998554
No 50
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.86 E-value=7.6e-21 Score=127.54 Aligned_cols=90 Identities=29% Similarity=0.452 Sum_probs=79.3
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEE
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVY 72 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~ 72 (165)
...+.|.|+|++|++|+..+ .+.+||||++.+.. ..++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 34688999999999999888 77899999999864 57799999999999999999998644 2356999999
Q ss_pred eCCCCCCCCeeEEEEEechh
Q 031128 73 DKDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~ 92 (165)
|++.++++++||++.++|.+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred eCCCCCCCcEeeEEEEeccc
Confidence 99999899999999999987
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.85 E-value=4.3e-21 Score=127.74 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=79.6
Q ss_pred ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT 76 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~ 76 (165)
..+.|.|+|++|+||+..+.+.+||||++++.. .+.+|++++++.||.|||+|.|.+.... ..|.|+|||.+.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 357899999999999988877899999999863 3668999999999999999999986532 458999999988
Q ss_pred CC-CCCeeEEEEEechhhhhh
Q 031128 77 FS-LDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 77 ~~-~d~~iG~~~i~l~~l~~~ 96 (165)
.+ ++++||.+.+++.++..+
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~ 110 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQ 110 (119)
T ss_pred CcCCCEEEEEEEecHHHhccC
Confidence 75 478999999999988643
No 52
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.85 E-value=6.6e-21 Score=128.35 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=80.8
Q ss_pred ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
..+.|.|+|++|+||++.+ . +.+||||++++. ..++||++++++.||+|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 4578999999999999887 4 889999999986 2367999999999999999999998653 3469999999
Q ss_pred CCCCCCCCeeEEEEEechhhhh
Q 031128 74 KDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
.+.++++++||++.|+|.++.-
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred CCCCcCcceEEEEEEEcCCccc
Confidence 9999999999999999988754
No 53
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.85 E-value=1.2e-20 Score=126.93 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=82.1
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
...+.|.|+|++|+||+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 34688999999999999988 7899999999986 3578999999999999999999998643 2469999999
Q ss_pred CCCC--CCCCeeEEEEEechhhhhhh
Q 031128 74 KDTF--SLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 74 ~~~~--~~d~~iG~~~i~l~~l~~~~ 97 (165)
.+.+ +++++||++.+++.++..+.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~ 118 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSK 118 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccC
Confidence 9875 68999999999999886543
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.85 E-value=1e-20 Score=126.98 Aligned_cols=92 Identities=21% Similarity=0.389 Sum_probs=82.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEeccccc-CCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVK-NNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFS 78 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~-~~~~P~w~e~f~f~~~~~-----~~~l~i~v~d~~~~~ 78 (165)
.|+|+|++|++|+..+ .+.+||||++++++ +.++|++.. ++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999888 78999999999988 888999876 479999999999999776 356999999999988
Q ss_pred CCCeeEEEEEechhhhhhhc
Q 031128 79 LDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~ 98 (165)
+|++||++.+++.++..+..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC
Confidence 99999999999999987543
No 55
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.85 E-value=1.2e-20 Score=124.16 Aligned_cols=89 Identities=27% Similarity=0.348 Sum_probs=79.4
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-----CcEEEEEEeCCCCCCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-----LPIKLTVYDKDTFSLD 80 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-----~~l~i~v~d~~~~~~d 80 (165)
-.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||.|.|.+..+. ..|.|+|||++.++++
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 46899999999998 467999999999999999999999999999999999985433 4599999999999889
Q ss_pred CeeEEEEEechhhhhhh
Q 031128 81 DKMGDAEFYITPFLEAL 97 (165)
Q Consensus 81 ~~iG~~~i~l~~l~~~~ 97 (165)
++||++.++|+++..+.
T Consensus 81 ~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 81 TLIGSFKLDVGTVYDQP 97 (111)
T ss_pred CccEEEEECCccccCCC
Confidence 99999999999887653
No 56
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.85 E-value=8.4e-21 Score=132.72 Aligned_cols=92 Identities=32% Similarity=0.375 Sum_probs=80.9
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD 73 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d 73 (165)
..|.|.|+|++|+||+..+ .+.+||||++.+. ...++|++++++.||.|||.|.|.+... +..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 5689999999999999988 7889999999883 3578999999999999999999986422 2459999999
Q ss_pred CCCCCCCCeeEEEEEechhhhh
Q 031128 74 KDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
++.++++++||++.+++.++..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCCCCceEEEEEEeCCcccc
Confidence 9999899999999999988765
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.85 E-value=1.6e-20 Score=125.63 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=81.4
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 72 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~ 72 (165)
...+.|.|+|++|+||+..+ .+.+||||++++. . .+++|++.+++.||+|||+|.|.+... +..|.|+||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 34678999999999999887 7789999999975 1 368999999999999999999998653 356999999
Q ss_pred eCCCCCCCCeeEEEEEechhhhh
Q 031128 73 DKDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
|.+.++++++||++.++|+++..
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccC
Confidence 99999999999999999998854
No 58
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=7.7e-20 Score=126.09 Aligned_cols=90 Identities=30% Similarity=0.409 Sum_probs=80.4
Q ss_pred EEEEEEEEeeCCCCCC-C--------------CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC--CCcEEE
Q 031128 7 LLRVHVLRGVNLAVRD-V--------------VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS--NLPIKL 69 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~--------------~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~--~~~l~i 69 (165)
.|.|+|++|++|+.++ . +.+||||++.+++++.+|++++++.||+|||+|.|.+..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999987 3 2589999999999999999999999999999999997543 356999
Q ss_pred EEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128 70 TVYDKDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 70 ~v~d~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
+|||++..++|++||++.+++.++...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 999999999999999999999988764
No 59
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.84 E-value=4.4e-20 Score=124.46 Aligned_cols=92 Identities=28% Similarity=0.419 Sum_probs=78.9
Q ss_pred ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-~~~---~~~~l~i~v~d~ 74 (165)
..+.|.|+|++|++|+..+ . +.+||||++.+. .++.+|++++++.||.|||+|.|. +.. ....|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 4578999999999999887 4 889999999985 456799999999999999999994 432 123599999999
Q ss_pred CCCCCCCeeEEEEEechhhhh
Q 031128 75 DTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~ 95 (165)
+.++++++||++.++|+++.-
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred CCCCCCceeEEEEEeccccCC
Confidence 999999999999999988754
No 60
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.84 E-value=9.1e-20 Score=124.68 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=76.5
Q ss_pred ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEE-ecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-C---C
Q 031128 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-F---S 78 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~-~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~-~---~ 78 (165)
....|.|.|++|++|+.++ +|||.+.+++... ||+++.++.||.|+|.|.|.+..+...+.|.||..+. . .
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 4567999999999998865 8999999999875 9999999999999999999876666779999986543 2 2
Q ss_pred CCCeeEEEEEechhhhhhh
Q 031128 79 LDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~ 97 (165)
++++||.+.|++.++..+.
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~ 103 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQ 103 (146)
T ss_pred CCcEEEEEEEEHHHhcCCC
Confidence 6799999999999988643
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=3.5e-20 Score=124.35 Aligned_cols=94 Identities=31% Similarity=0.469 Sum_probs=81.1
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD 75 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~ 75 (165)
..+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 4678999999999999888 7789999999983 4678999999999999999999975322 245999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.++++++||++.+++.++..+.
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDLTE 115 (125)
T ss_pred CCcCCcEeeEEEEecccccCCC
Confidence 9989999999999999877543
No 62
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.84 E-value=3.9e-20 Score=123.71 Aligned_cols=94 Identities=34% Similarity=0.460 Sum_probs=81.2
Q ss_pred cccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128 3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 72 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~ 72 (165)
...+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45789999999999999876 56899999999841 467999999999999999999998653 346999999
Q ss_pred eCCCCCCCCeeEEEEEechhhhhh
Q 031128 73 DKDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
|++.++++++||++.++|+++..+
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred eCCCCcCCceeeEEEEeccccccc
Confidence 999998999999999999988543
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.83 E-value=5.4e-20 Score=123.09 Aligned_cols=98 Identities=24% Similarity=0.389 Sum_probs=83.7
Q ss_pred CcccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 2 ENLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 2 ~~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
+...+.|.|+|++|++|+..+ .+.+||||++++. ....+|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 345788999999999999886 6789999999984 3567899999999999999999998653 2459999999
Q ss_pred CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 74 KDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
++..+++++||++.++|+++......
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~ 115 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGG 115 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCc
Confidence 99988899999999999988775543
No 64
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.83 E-value=3.2e-19 Score=119.77 Aligned_cols=89 Identities=27% Similarity=0.482 Sum_probs=78.8
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG 84 (165)
.|.|+|.+|+ |...+ .+.+||||+++++++ .++|++++++.+|.|||.|.|.+. ....|.|+|||++..+++++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 54444 778999999999977 889999999999999999999985 3567999999999998999999
Q ss_pred EEEEechhhhhhh
Q 031128 85 DAEFYITPFLEAL 97 (165)
Q Consensus 85 ~~~i~l~~l~~~~ 97 (165)
++.++|.++....
T Consensus 81 ~~~i~l~~l~~~~ 93 (125)
T cd04021 81 EASLDLSDILKNH 93 (125)
T ss_pred EEEEEHHHhHhhc
Confidence 9999999988754
No 65
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.83 E-value=7.6e-20 Score=126.32 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=78.7
Q ss_pred CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----------------------------eEEecccccCCCCCe
Q 031128 2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----------------------------QKLKTRVVKNNVNPE 51 (165)
Q Consensus 2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~~~~P~ 51 (165)
+.+.+.|.|+|++|++|...+ .+.+||||++.+.. ..++|+++.++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 457899999999999999988 88999999999863 236899999999999
Q ss_pred EecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeEEEEEechhhh
Q 031128 52 WNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDAEFYITPFL 94 (165)
Q Consensus 52 w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~ 94 (165)
|||+|.|.+... ...|.|+|||++ +++||++.++++++.
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 999999999764 356999999987 899999999999887
No 66
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.83 E-value=7.2e-20 Score=124.19 Aligned_cols=92 Identities=27% Similarity=0.321 Sum_probs=81.4
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEecccccCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-------KQKLKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT 70 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-------~~~~~T~~~~~~~~P~w~e~f~f~~~~~-----~~~l~i~ 70 (165)
..+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||+|||+|.|.+... ...|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 4578999999999999887 7889999999986 3468999999999999999999998652 3459999
Q ss_pred EEeCCCCCCCCeeEEEEEechhhhh
Q 031128 71 VYDKDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 71 v~d~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
|||++.++++++||++.++|+++..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999889999999999998875
No 67
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=8.6e-20 Score=122.40 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=79.1
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEE-EeCC---CCcEEEEEEeC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVYDK 74 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-~~~~---~~~l~i~v~d~ 74 (165)
...+.|.|+|++|+||++.+ .+.+||||++.+. .++++|++.++ .||+|||+|.|. +... +..|.|+|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 34578999999999999988 7788999998774 35779999887 999999999998 5432 34599999999
Q ss_pred CCCCCCCeeEEEEEechhhhhh
Q 031128 75 DTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
+.++++++||++.++|+++...
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred CCcccCceEEEEEEeccccCCC
Confidence 9999999999999999988553
No 68
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.83 E-value=2.9e-20 Score=165.54 Aligned_cols=119 Identities=22% Similarity=0.440 Sum_probs=104.4
Q ss_pred CCcccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCC
Q 031128 1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTF 77 (165)
Q Consensus 1 ~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~~ 77 (165)
|+...|.|.|+|++|+||. .+.+.+||||++.++++ +.||++++++.||.|||+|.|.+.++. ..|+|+|||+|.+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 6778999999999999998 44789999999999965 789999999999999999998887754 6699999999999
Q ss_pred CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc--ceeee---EEE
Q 031128 78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGE---VKI 152 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~---l~l 152 (165)
+ ++.+|.+.|++.++..+... ..||.|.+ .+.|+ |++
T Consensus 2054 ~-kd~~G~~~i~l~~vv~~~~~-------------------------------------~~~~~L~~~~~k~G~~~~~~~ 2095 (2102)
T PLN03200 2054 G-KSSLGKVTIQIDRVVMEGTY-------------------------------------SGEYSLNPESNKDGSSRTLEI 2095 (2102)
T ss_pred C-CCCCceEEEEHHHHhcCcee-------------------------------------eeeeecCcccccCCCcceEEE
Confidence 5 55999999999999875543 88899987 56899 999
Q ss_pred EEEEEe
Q 031128 153 QLEWID 158 (165)
Q Consensus 153 ~l~~~~ 158 (165)
+++|.+
T Consensus 2096 e~~w~~ 2101 (2102)
T PLN03200 2096 EFQWSN 2101 (2102)
T ss_pred EEEecC
Confidence 999964
No 69
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.83 E-value=4.7e-19 Score=122.33 Aligned_cols=90 Identities=27% Similarity=0.429 Sum_probs=73.4
Q ss_pred EEEEEEEeeC--CCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---------CCcEEEE
Q 031128 8 LRVHVLRGVN--LAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---------NLPIKLT 70 (165)
Q Consensus 8 L~V~v~~a~~--L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---------~~~l~i~ 70 (165)
..++|..|++ |+... .+..||||++++. .++.+|++++++.||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 56655 6789999999972 4688999999999999999999999654 2459999
Q ss_pred EEeCCCC-CCCCeeEEEEEechhhhhhh
Q 031128 71 VYDKDTF-SLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 71 v~d~~~~-~~d~~iG~~~i~l~~l~~~~ 97 (165)
|||++.+ ++|++||++.++|+.+..+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~ 111 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC 111 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC
Confidence 9999886 57999999999999886654
No 70
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.83 E-value=8.3e-20 Score=123.53 Aligned_cols=90 Identities=32% Similarity=0.517 Sum_probs=80.4
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCCC
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDTF 77 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~--~~~l~i~v~d~~~~ 77 (165)
+.|.|+|++|++|+..+ .+.+||||.+.+. ...++|++++++.+|.|||+|.|.+... ...|.|+|||++.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999887 7789999999986 3678999999999999999999998754 34599999999988
Q ss_pred CCCCeeEEEEEechhhhh
Q 031128 78 SLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~ 95 (165)
+++++||++.+++.++..
T Consensus 93 ~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 93 TRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCcceeEEEEEeHHHhCc
Confidence 899999999999998875
No 71
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=1.7e-19 Score=119.28 Aligned_cols=90 Identities=30% Similarity=0.479 Sum_probs=79.4
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeE
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG 84 (165)
|+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+... ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999887 77899999999975 457999999999999999999998764 456999999999988999999
Q ss_pred EEEEechhhhhhh
Q 031128 85 DAEFYITPFLEAL 97 (165)
Q Consensus 85 ~~~i~l~~l~~~~ 97 (165)
++.+++.++..+.
T Consensus 81 ~~~~~l~~l~~~~ 93 (115)
T cd04040 81 SAYIDLSDLEPEE 93 (115)
T ss_pred EEEEEHHHcCCCC
Confidence 9999999887643
No 72
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.82 E-value=4.9e-19 Score=120.32 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=75.7
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------eEEecccccCCCCCeE-ecEEEEEEeCCCCcEEEEE
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------QKLKTRVVKNNVNPEW-NEDLTLSISDSNLPIKLTV 71 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~~~~T~~~~~~~~P~w-~e~f~f~~~~~~~~l~i~v 71 (165)
.+.|++++|++|+ .+ .+.+||||++++.. +.++|++++++.||.| ||.|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 3679999999998 56 88999999999852 3689999999999999 999999985 345799999
Q ss_pred EeCCCCCC---CCeeEEEEEechhhhhhh
Q 031128 72 YDKDTFSL---DDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 72 ~d~~~~~~---d~~iG~~~i~l~~l~~~~ 97 (165)
||++..++ +++||++.+++.++..+.
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99865433 799999999999997754
No 73
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.82 E-value=1.2e-19 Score=123.69 Aligned_cols=89 Identities=21% Similarity=0.412 Sum_probs=78.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEecccccCCCCCeEecEEEEEEeCC----------------CCcE
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQKLKTRVVKNNVNPEWNEDLTLSISDS----------------NLPI 67 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----------------~~~l 67 (165)
|.|+|++|++|+....+.+||||+++++ ...++|+++.++.+|.|||.|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999987756789999999998 6789999999999999999999998664 2459
Q ss_pred EEEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128 68 KLTVYDKDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 68 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
.|+|||++.++++++||++.+++.++...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~ 109 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQA 109 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence 99999999988999999999999987743
No 74
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.81 E-value=4.9e-19 Score=117.37 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=65.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCCCCCCCCee
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKDTFSLDDKM 83 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~~~~~d~~i 83 (165)
|.|+|++|++|+.. +.+||||.++++++ .++|+++++ .+|.|||+|.|.+.... ..|.+.+||.+...++.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999887 78999999999975 479999988 99999999999987632 3478889998876666667
Q ss_pred EEEEEec
Q 031128 84 GDAEFYI 90 (165)
Q Consensus 84 G~~~i~l 90 (165)
|.+.+..
T Consensus 79 g~v~l~~ 85 (117)
T cd08383 79 GKVALSK 85 (117)
T ss_pred EEEEecC
Confidence 7655543
No 75
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=4.4e-19 Score=118.97 Aligned_cols=89 Identities=31% Similarity=0.468 Sum_probs=78.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQK--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~ 82 (165)
.|+|+|++|++|+..+ .+.+||||++.+++.. .+|++++++.||.|||+|.|.+..+. ..|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 3789999999999988 7899999999998765 57888889999999999999986554 459999999999999999
Q ss_pred eEEEEEechhhhh
Q 031128 83 MGDAEFYITPFLE 95 (165)
Q Consensus 83 iG~~~i~l~~l~~ 95 (165)
||++.+++++..-
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999987653
No 76
>PLN03008 Phospholipase D delta
Probab=99.81 E-value=3.9e-19 Score=147.36 Aligned_cols=121 Identities=22% Similarity=0.420 Sum_probs=101.5
Q ss_pred cEEEEEEEEEeeCCCCCC-------------------------------------------CCCCCcEEEEEECCe-EEe
Q 031128 5 MGLLRVHVLRGVNLAVRD-------------------------------------------VVSSDPYVVIKMGKQ-KLK 40 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~-~~~ 40 (165)
-|.|.++|.+|++|+.++ .+++||||+|.++++ ..+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 588999999999998511 135699999999876 459
Q ss_pred cccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCcc
Q 031128 41 TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120 (165)
Q Consensus 41 T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 120 (165)
|++++++.||+|||+|.|.+.++...|.|+|||++.++ +++||++.|++.++..+...
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v--------------------- 150 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI--------------------- 150 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------------------
Confidence 99999999999999999999887778999999999995 68999999999998775433
Q ss_pred ccccceeEEeCCcEEeeeeeeeccce------eeeEEEEEEEEeCCCCC
Q 031128 121 LAEESHIVWTDGKLVQNLFLRLRNVE------VGEVKIQLEWIDIPGSR 163 (165)
Q Consensus 121 ~~~~~~~~~~~g~~~~~~~~~l~~~~------~G~l~l~l~~~~~~~~~ 163 (165)
+.|++|.+.. .++|+|+|+|.|+....
T Consensus 151 ----------------d~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 151 ----------------SGWFPVLGASGKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred ----------------EEEEEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence 7777776532 57999999999997653
No 77
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.81 E-value=2.7e-19 Score=121.58 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=77.4
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~ 74 (165)
..+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||+|||+|.|.+... +..|.|+|||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4578999999999999988 78899999999852 256899999999999999999998643 34599999999
Q ss_pred CCCCCCCeeEEEEEechh
Q 031128 75 DTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (165)
+.++++++||++.+....
T Consensus 93 d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCCeeEEEEECCCC
Confidence 999999999999997754
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.80 E-value=3e-19 Score=121.09 Aligned_cols=90 Identities=36% Similarity=0.469 Sum_probs=79.3
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
...+.|.|+|++|++|+..+ .+.+||||++.+.. ..++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 45789999999999999988 78899999999852 467999999999999999999998653 3459999999
Q ss_pred CCCCCCCCeeEEEEEechh
Q 031128 74 KDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~ 92 (165)
++..+++++||++.+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCccEEEEEEEecCC
Confidence 9998899999999999975
No 79
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.80 E-value=1.7e-19 Score=122.80 Aligned_cols=91 Identities=30% Similarity=0.401 Sum_probs=78.9
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD 73 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d 73 (165)
...|.|.|+|++|++|+..+ .+.+||||++.+.. ..++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 35689999999999999888 78899999999852 3568999999999999999999986432 358999999
Q ss_pred CCCCCCCCeeEEEEEechhh
Q 031128 74 KDTFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l 93 (165)
++.++++++||++.+++...
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCCCceeEEEEECCccC
Confidence 99999999999999999753
No 80
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.80 E-value=4e-20 Score=142.81 Aligned_cols=93 Identities=34% Similarity=0.493 Sum_probs=83.6
Q ss_pred cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT 76 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~ 76 (165)
...|.|+|.+|+||.+++ +|.+||||++.+- ..+++|++++.++||+|||+|+|.+...+ ..|.++|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 356889999999999999 9999999999985 35679999999999999999999997654 459999999999
Q ss_pred CCCCCeeEEEEEechhhhhhh
Q 031128 77 FSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 77 ~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.++++|+|...+.++++....
T Consensus 259 TsRNDFMGslSFgisEl~K~p 279 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP 279 (683)
T ss_pred cccccccceecccHHHHhhcc
Confidence 999999999999999998754
No 81
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.80 E-value=5.4e-19 Score=120.20 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=77.4
Q ss_pred ccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128 4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 72 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~ 72 (165)
..+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||+|||.|.|.+... +..|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 4688999999999999887 35589999999873 256899999999999999999998753 345999999
Q ss_pred eCCCCCCCCeeEEEEEechh
Q 031128 73 DKDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~ 92 (165)
|++.++++++||++.+++..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999864
No 82
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=9.3e-19 Score=119.36 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=79.6
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 72 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~ 72 (165)
...+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.+... +..|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 45789999999999999988 77899999999852 256999999999999999999998643 346999999
Q ss_pred eCCCCCCCCeeEEEEEechhhh
Q 031128 73 DKDTFSLDDKMGDAEFYITPFL 94 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~l~ 94 (165)
|.+.++++++||++.+++....
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999987543
No 83
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=9.8e-19 Score=119.05 Aligned_cols=89 Identities=27% Similarity=0.394 Sum_probs=78.0
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~ 74 (165)
..+.|.|+|++|++|+..+ .+.+||||++.+.. .+.+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4678999999999999988 78999999999842 356899999999999999999998642 34589999999
Q ss_pred CCCCCCCeeEEEEEechh
Q 031128 75 DTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (165)
+.++++++||++.+++..
T Consensus 93 d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCCccEEEEEECCcC
Confidence 999999999999999987
No 84
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.78 E-value=9.2e-18 Score=112.87 Aligned_cols=88 Identities=32% Similarity=0.545 Sum_probs=76.5
Q ss_pred EEEEEEEEeeCCCCCC---CCCCCcEEEEEE------CCeEEecccccCCC-CCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031128 7 LLRVHVLRGVNLAVRD---VVSSDPYVVIKM------GKQKLKTRVVKNNV-NPEWNEDLTLSISDSN-LPIKLTVYDKD 75 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~---~~~~dpyv~v~~------~~~~~~T~~~~~~~-~P~w~e~f~f~~~~~~-~~l~i~v~d~~ 75 (165)
.|+|+|++|++|+..+ .+..||||++++ ...+++|+++.++. ||.|||+|.|.+..+. ..|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999998776 578899999998 34668999988775 9999999999987655 34899999999
Q ss_pred CCCCCCeeEEEEEechhhhh
Q 031128 76 TFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~ 95 (165)
.. ++++||++.++++++..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcC
Confidence 88 99999999999998854
No 85
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=2.4e-18 Score=117.16 Aligned_cols=91 Identities=29% Similarity=0.385 Sum_probs=78.8
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 73 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d 73 (165)
...+.|.|+|++|++|+..+ .+.+||||++.+. + ..++|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 35688999999999999887 7889999999983 2 356899999999999999999997532 3459999999
Q ss_pred CCCCCCCCeeEEEEEechhh
Q 031128 74 KDTFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l 93 (165)
++.++++++||++.+++.+.
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCCcEeEEEEECCccC
Confidence 99999999999999999865
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.78 E-value=2.5e-18 Score=115.80 Aligned_cols=90 Identities=17% Similarity=0.302 Sum_probs=76.4
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCC-CCeEecEEEEEEeCCCC--cEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNV-NPEWNEDLTLSISDSNL--PIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~-~P~w~e~f~f~~~~~~~--~l~i~v~d~ 74 (165)
..|+|+|+|++|+||++.. .+..||||+|++-. .+.+|++++++. +|.|||.|.|++..... .|.++|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 4688999999999999875 56679999998752 467899999995 69999999999975432 388999999
Q ss_pred CCCCCCCeeEEEEEechhh
Q 031128 75 DTFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l 93 (165)
+..+++++||++.+..+..
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 9999999999999999753
No 87
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.78 E-value=7.3e-19 Score=119.14 Aligned_cols=89 Identities=30% Similarity=0.437 Sum_probs=78.9
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~ 74 (165)
..+.|.|+|++|++|+..+ .+.+||||++.+.. ..++|+++.++.+|.|||+|.|.+... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4578999999999999887 78899999999864 256999999999999999999998654 35699999999
Q ss_pred CCCCCCCeeEEEEEechh
Q 031128 75 DTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (165)
+..+++++||.+.+++++
T Consensus 92 ~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCCceeEEEEECCCC
Confidence 988899999999999988
No 88
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.78 E-value=3.2e-18 Score=114.11 Aligned_cols=88 Identities=28% Similarity=0.421 Sum_probs=75.8
Q ss_pred EEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCC----C
Q 031128 11 HVLRGVNLAVRD-VVSSDPYVVIKMGKQ-------KLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDT----F 77 (165)
Q Consensus 11 ~v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~----~ 77 (165)
-.++|++|+..+ .+.+||||++.+... .++|++++++.||.|||.|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 358899999888 889999999999754 4899999999999999999998653 33569999999997 7
Q ss_pred CCCCeeEEEEEechhhhhhhc
Q 031128 78 SLDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~~~~ 98 (165)
+++++||++.+++.++..+..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~ 105 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG 105 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC
Confidence 899999999999999987543
No 89
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.78 E-value=1.9e-18 Score=117.48 Aligned_cols=89 Identities=25% Similarity=0.421 Sum_probs=76.0
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~ 74 (165)
..|.|.|+|++|++|+..+ .+.+||||++.+. . ..++|++++++.||.|||+|.|.+.... ..|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 4688999999999999988 7889999999973 2 3578999999999999999999985422 3499999999
Q ss_pred CCCCCCCeeEEEEEechh
Q 031128 75 DTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (165)
+..+++++||++.+....
T Consensus 92 d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCCcEEEEEEEcCcc
Confidence 999999999999876543
No 90
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.77 E-value=2.9e-18 Score=116.45 Aligned_cols=90 Identities=29% Similarity=0.428 Sum_probs=77.7
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD 73 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d 73 (165)
...+.|+|+|++|++|+..+ .+.+||||++.+.. ..++|++++++.||.|||.|.|.+.... ..|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 35689999999999999988 78999999999842 3568999999999999999999985422 348999999
Q ss_pred CCCCCCCCeeEEEEEechh
Q 031128 74 KDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~ 92 (165)
++.++++++||++.+++..
T Consensus 91 ~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCCCceeEEEEECCCC
Confidence 9999999999999999863
No 91
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=7.4e-18 Score=112.77 Aligned_cols=95 Identities=28% Similarity=0.401 Sum_probs=80.6
Q ss_pred cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEE
Q 031128 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVY 72 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~ 72 (165)
...+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||.|.|..... ...|.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 34578999999999999887 7789999999974 2468999999999999999999964322 346999999
Q ss_pred eCCCCCCCCeeEEEEEechhhhhhhc
Q 031128 73 DKDTFSLDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~~~~ 98 (165)
|++.+ ++++||++.++++++..+..
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcc
Confidence 99988 89999999999999887543
No 92
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.3e-18 Score=134.35 Aligned_cols=94 Identities=33% Similarity=0.480 Sum_probs=82.5
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT 76 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~ 76 (165)
....|.|+|++|++|+..+ .+.+||||++++. +.+.+|++.++++||.|||+|.|.+... ...|.++|||.|+
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 4567999999999999999 6789999999997 3578999999999999999999997543 3569999999999
Q ss_pred CCCCCeeEEEEEechhhhhhh
Q 031128 77 FSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 77 ~~~d~~iG~~~i~l~~l~~~~ 97 (165)
++++++||++.++|..+....
T Consensus 245 fsr~~~iGev~~~l~~~~~~~ 265 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLS 265 (421)
T ss_pred cccccEEEEEEecCccccccc
Confidence 999999999999988766543
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.75 E-value=3.8e-18 Score=116.25 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=77.0
Q ss_pred ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 75 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~ 75 (165)
..+.|.|+|++|+||+..+.+.+||||++.+.. .+++|++++++.||.|||.|.|.+... ...|.|+|||.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 467899999999999987767799999999762 366899999999999999999998642 245999999999
Q ss_pred CCCCCCeeEEEEEechhh
Q 031128 76 TFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l 93 (165)
..+++++||++.+.....
T Consensus 93 ~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCcceEEEEEECCccc
Confidence 988999999999986533
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.75 E-value=1.4e-17 Score=109.40 Aligned_cols=80 Identities=26% Similarity=0.552 Sum_probs=68.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeC-------C
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK-------D 75 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~-------~ 75 (165)
|.|+|.+|+||+ +.+||||++.+.. ..++|++++++.||+|||+|.|.+. ....|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence 679999999996 4589999998863 4689999999999999999999996 456799999998 4
Q ss_pred CCCCCCeeEEEEEechh
Q 031128 76 TFSLDDKMGDAEFYITP 92 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~ 92 (165)
..++|+++|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 56789999998888864
No 95
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-17 Score=134.53 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=108.4
Q ss_pred EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 83 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i 83 (165)
..|.|+|.+|+||++.+ .|..||||.|.+++. ..||.++.+++.|.|.|+|.|.+...-..|.|.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 45899999999999999 899999999999965 67999999999999999999999877778999999999 8899999
Q ss_pred EEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce-----eeeEEEEEEEEe
Q 031128 84 GDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWID 158 (165)
Q Consensus 84 G~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~ 158 (165)
|.+.|.=+++...... |.||.|+.+. +|+|+|++++.+
T Consensus 84 GKvai~re~l~~~~~~-------------------------------------d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGK-------------------------------------DTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ceeeeeHHHHhhCCCC-------------------------------------ccceeccccCCChhhceeEEEEEEecc
Confidence 9999998888775533 8898888664 799999999999
Q ss_pred CCCCCCC
Q 031128 159 IPGSRGL 165 (165)
Q Consensus 159 ~~~~~~~ 165 (165)
.-+++|+
T Consensus 127 ~~~~~~~ 133 (800)
T KOG2059|consen 127 AIQSSGL 133 (800)
T ss_pred ccCCCcc
Confidence 8877764
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.72 E-value=5.2e-17 Score=106.59 Aligned_cols=86 Identities=30% Similarity=0.542 Sum_probs=72.8
Q ss_pred EEEEEeeCCCCCC-CCCCCcEEEEEECCe------EEecccccCCCCCeEecEEEEEEeC-----CCCcEEEEEEeCCCC
Q 031128 10 VHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------KLKTRVVKNNVNPEWNEDLTLSISD-----SNLPIKLTVYDKDTF 77 (165)
Q Consensus 10 V~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~~T~~~~~~~~P~w~e~f~f~~~~-----~~~~l~i~v~d~~~~ 77 (165)
+-.++|++|+..+ .+.+||||++++.+. .++|++++++.||.|| +|.|.+.. ....|.|+|||++.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3457899999988 789999999997542 5899999999999999 68877532 145699999999999
Q ss_pred CCCCeeEEEEEechhhhhh
Q 031128 78 SLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~~ 96 (165)
++|++||++.++++++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999843
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.71 E-value=8.9e-17 Score=100.02 Aligned_cols=80 Identities=35% Similarity=0.652 Sum_probs=71.6
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~ 82 (165)
|.|+|.+|++|+..+ .+..+|||++.+.. ..++|+++.++.+|.|+|+|.|.+..+. ..|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999877 77899999999986 6799999999999999999999976544 449999999999988999
Q ss_pred eEEEE
Q 031128 83 MGDAE 87 (165)
Q Consensus 83 iG~~~ 87 (165)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.3e-17 Score=132.77 Aligned_cols=92 Identities=30% Similarity=0.504 Sum_probs=83.1
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-----
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF----- 77 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~----- 77 (165)
-...++++|++|++|..++ .|++||||.++++..+.+|+++...+||+|||.|.|++.+....|+++|||.|.-
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence 3568899999999999999 9999999999999999999999999999999999999999888899999998752
Q ss_pred ------CCCCeeEEEEEechhhhh
Q 031128 78 ------SLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 78 ------~~d~~iG~~~i~l~~l~~ 95 (165)
.+|+|+|+..|.+..+..
T Consensus 373 rqkl~resddflgqtvievrtlsg 396 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSG 396 (1283)
T ss_pred HHHhhhcccccccceeEEEEeccc
Confidence 378999999998876543
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.61 E-value=1.5e-14 Score=92.17 Aligned_cols=90 Identities=36% Similarity=0.602 Sum_probs=79.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe---EEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCe
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---KLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~ 82 (165)
|.|.|++|++|.... ....+|||.+.+... ..+|+++.++.+|.|||.|.|.+... ...|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 789999999998877 467899999999864 78999999989999999999999876 5679999999998878999
Q ss_pred eEEEEEechhhhhhh
Q 031128 83 MGDAEFYITPFLEAL 97 (165)
Q Consensus 83 iG~~~i~l~~l~~~~ 97 (165)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999998887654
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.60 E-value=2e-14 Score=91.17 Aligned_cols=87 Identities=44% Similarity=0.745 Sum_probs=78.0
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCCeeE
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDDKMG 84 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~~~~d~~iG 84 (165)
|.|.|++|+++.... ....+|||.+.+.. ..++|.+..++.+|.|++.|.|.+.. ....|.|+||+.+..+++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998755 66899999999997 88899999999999999999999976 4566999999999887899999
Q ss_pred EEEEechhhh
Q 031128 85 DAEFYITPFL 94 (165)
Q Consensus 85 ~~~i~l~~l~ 94 (165)
.+.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999987
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=99.57 E-value=6.3e-14 Score=112.38 Aligned_cols=94 Identities=26% Similarity=0.488 Sum_probs=78.8
Q ss_pred EEEEEEEEEeeCCCCC-----C-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEe
Q 031128 6 GLLRVHVLRGVNLAVR-----D-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYD 73 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~-----~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d 73 (165)
..|.|+|+.|++++.. + ....||||+|.+.+ ..++|.+..++.||.|||+|.|.+..++.. |.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2 34679999999863 356777777789999999999999888865 7999999
Q ss_pred CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 74 KDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+|..++++|+|+..+|+..+..+.++
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~ 514 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGIRA 514 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCcee
Confidence 99988999999999999998886654
No 102
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=4.3e-14 Score=95.16 Aligned_cols=91 Identities=26% Similarity=0.283 Sum_probs=76.0
Q ss_pred EEEEEEEEeeCCCCCC---CC--CCCcEEEEEECC---eEEecccccCCCC--CeEecEEEEEEeCC-------------
Q 031128 7 LLRVHVLRGVNLAVRD---VV--SSDPYVVIKMGK---QKLKTRVVKNNVN--PEWNEDLTLSISDS------------- 63 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~---~~--~~dpyv~v~~~~---~~~~T~~~~~~~~--P~w~e~f~f~~~~~------------- 63 (165)
.|+|.|.+|++++..+ .| .+||||++.+.+ .+++|.+..++.| |.||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999966543 44 499999999874 5689999999988 99999999987541
Q ss_pred -----------CCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 64 -----------NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 64 -----------~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
...|.++|||.|.+++|++||.+.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1348999999999999999999999999877643
No 103
>PLN02270 phospholipase D alpha
Probab=99.55 E-value=1e-13 Score=115.36 Aligned_cols=121 Identities=19% Similarity=0.357 Sum_probs=100.9
Q ss_pred ccEEEEEEEEEeeCCCCC-----------------C--CCCCCcEEEEEECCeE-EecccccCC-CCCeEecEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVR-----------------D--VVSSDPYVVIKMGKQK-LKTRVVKNN-VNPEWNEDLTLSISD 62 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~-----------------~--~~~~dpyv~v~~~~~~-~~T~~~~~~-~~P~w~e~f~f~~~~ 62 (165)
.-|.|.|+|.+|++|+.. . .+++|||+.|.+++.+ .||+++.+. .||.|+|.|.+++..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 458999999999999852 1 2467999999999765 599999885 699999999999998
Q ss_pred CCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeee
Q 031128 63 SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRL 142 (165)
Q Consensus 63 ~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 142 (165)
....+.|.|.|.+.++ ..+||.+.+|+.++..+... +.||++
T Consensus 86 ~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i-------------------------------------~~~~~~ 127 (808)
T PLN02270 86 MASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEV-------------------------------------DRWVEI 127 (808)
T ss_pred CcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCcc-------------------------------------ccEEec
Confidence 8888999999999994 56999999999998886544 777777
Q ss_pred ccce------eeeEEEEEEEEeCCCC
Q 031128 143 RNVE------VGEVKIQLEWIDIPGS 162 (165)
Q Consensus 143 ~~~~------~G~l~l~l~~~~~~~~ 162 (165)
-+.. .-+|+++++|.|+...
T Consensus 128 ~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 128 LDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 6543 3499999999998664
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.49 E-value=5.4e-13 Score=113.35 Aligned_cols=97 Identities=26% Similarity=0.472 Sum_probs=86.6
Q ss_pred cccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 78 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~ 78 (165)
.++|.|.|+|.+|++|...+ .+..|||+++.+.. ...+|++.+++.||+|||+|...+..-.+.|.+++||.+...
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~ 512 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK 512 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence 47899999999999998877 78999999999764 345999999999999999999999877788999999999999
Q ss_pred CCCeeEEEEEechhhhhhhcc
Q 031128 79 LDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+|+.+|.+.++|..+.+....
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~ 533 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVK 533 (1227)
T ss_pred CcceeeeEEechHHhhhcccc
Confidence 999999999999998876543
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.47 E-value=3.8e-13 Score=110.25 Aligned_cols=93 Identities=26% Similarity=0.450 Sum_probs=79.2
Q ss_pred EEEEEEEEeeCCCCCC-----CCCCCcEEEEEECC-----eEEecccc-cCCCCCeEecEEEEEEeCCCCc-EEEEEEeC
Q 031128 7 LLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGK-----QKLKTRVV-KNNVNPEWNEDLTLSISDSNLP-IKLTVYDK 74 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-----~~~~dpyv~v~~~~-----~~~~T~~~-~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~ 74 (165)
+|.|+|+.|+++++.. ....||||.|.+.+ ...+|+++ .++.||.|+|+|.|.+..|+.. |+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766543 24679999999764 45689844 5569999999999999998876 79999999
Q ss_pred CCCCCCCeeEEEEEechhhhhhhcc
Q 031128 75 DTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+..++|+|+|+..+|+..+..+.++
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999987765
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.46 E-value=7.7e-13 Score=107.89 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=79.5
Q ss_pred cEEEEEEEEEeeCCCCC------C-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128 5 MGLLRVHVLRGVNLAVR------D-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 71 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~------~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v 71 (165)
...|.|+|+.|.+++.. + ....||||+|.+-+ .+.+|++..++.||.|||+|.|.+..++.. |+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 1 34579999999753 456888888899999999999999888755 79999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+|++..++|+|+|+..+|+..+..+.++
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~ 575 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHA 575 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccce
Confidence 9999988999999999999999887654
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.6e-13 Score=107.01 Aligned_cols=89 Identities=33% Similarity=0.474 Sum_probs=77.1
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~ 74 (165)
..|.|+|.|++|++|...+ .+..||||++.+-. .+.+|.+.+++.||+|||+|.|.+.... ..|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 4589999999999999988 78899999999752 4678999999999999999999886432 3489999999
Q ss_pred CCCCCCCeeEEEEEechh
Q 031128 75 DTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (165)
+.++++++||.+.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 999999999998887764
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.45 E-value=3.2e-13 Score=114.66 Aligned_cols=98 Identities=29% Similarity=0.419 Sum_probs=88.0
Q ss_pred CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCC
Q 031128 2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFS 78 (165)
Q Consensus 2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~ 78 (165)
-...|.|.|.+..|.||+..+ ++.+||||++.+.++ .++|+++++++||.|||++..++.... ..+.+.|+||+...
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence 356899999999999999999 888999999999876 789999999999999999999998544 45899999999999
Q ss_pred CCCeeEEEEEechhhhhhhcc
Q 031128 79 LDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+++.||.+.++|..+..+...
T Consensus 1116 knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038 1116 KNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred CccccccccccHhhcCcCCcc
Confidence 999999999999998876654
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=99.45 E-value=1.4e-12 Score=106.61 Aligned_cols=94 Identities=21% Similarity=0.361 Sum_probs=78.6
Q ss_pred cEEEEEEEEEeeCCCCCC-------CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128 5 MGLLRVHVLRGVNLAVRD-------VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 71 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-------~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v 71 (165)
...|.|+|+.|++++... ....||||+|.+-+ .+.+|+++.++.||.|||+|.|.+..++.. +.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 467999999999875321 23459999999753 567899999999999999999999887755 79999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhhhhc
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~ 98 (165)
||+|..+.++++|++.+|+..+..+.+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR 575 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR 575 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce
Confidence 999998889999999999999888653
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.45 E-value=1.8e-12 Score=105.51 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=79.2
Q ss_pred cEEEEEEEEEeeCCC--CC--C---CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128 5 MGLLRVHVLRGVNLA--VR--D---VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 71 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~--~~--~---~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v 71 (165)
...|.|+|+.|.+++ .. . ....||||+|.+. ..+.+|+++.++.||.|||+|.|.+..++-. |+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998753 11 1 3467999999985 3467899999989999999999999887755 79999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
||+|..+.++|+|+..+|+..+..+.++
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~ 558 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRA 558 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccce
Confidence 9999888899999999999999887654
No 111
>PLN02228 Phosphoinositide phospholipase C
Probab=99.41 E-value=4.6e-12 Score=102.95 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=78.2
Q ss_pred EEEEEEEEEeeCCCC---CC----CCCCCcEEEEEECC-----eEEecccccCCCCCeE-ecEEEEEEeCCCCc-EEEEE
Q 031128 6 GLLRVHVLRGVNLAV---RD----VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEW-NEDLTLSISDSNLP-IKLTV 71 (165)
Q Consensus 6 g~L~V~v~~a~~L~~---~~----~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w-~e~f~f~~~~~~~~-l~i~v 71 (165)
..|.|+|+.|++|+. .. ....||||+|.+.+ .+++|+++.++.||.| ||+|.|.+..++-. |+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 23479999999753 4578999988899999 99999999887755 79999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
+|++..+.++|+|+..+|++.+..+.++
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~ 538 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRA 538 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeE
Confidence 9999888999999999999999886654
No 112
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.40 E-value=1.6e-12 Score=104.24 Aligned_cols=122 Identities=25% Similarity=0.428 Sum_probs=99.2
Q ss_pred cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEecccccCCCCCeEe-cEEEEEEeCC---CCcEEEEEEeCCCCC
Q 031128 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWN-EDLTLSISDS---NLPIKLTVYDKDTFS 78 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~-e~f~f~~~~~---~~~l~i~v~d~~~~~ 78 (165)
.|.|.|+|..||+||-++ ....|.||.+.+++..++|.+..+++||.|| +.|.|++.+. +++|++++.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 478999999999999998 6678999999999999999999999999998 6899999764 356999999999999
Q ss_pred CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCcccccccee
Q 031128 79 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHI 127 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 127 (165)
.++-||.+.|+++.+.-.... ..-..+|.++-.|.|......+....+
T Consensus 82 andaigkv~i~idpl~~e~aa-qavhgkgtvisgw~pifdtihgirgei 129 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAA-QAVHGKGTVISGWFPIFDTIHGIRGEI 129 (1169)
T ss_pred cccccceeeeccChHHHHhHH-hhhcCCceEEeeeeecceeccccccee
Confidence 999999999999987764432 123456777777777655444444433
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.36 E-value=2.8e-12 Score=105.73 Aligned_cols=93 Identities=26% Similarity=0.446 Sum_probs=79.2
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEE-ecccccCCCCCeEe-cEEEEEEeCCCCc-EEEEEEeCCCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKL-KTRVVKNNVNPEWN-EDLTLSISDSNLP-IKLTVYDKDTF 77 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~-~T~~~~~~~~P~w~-e~f~f~~~~~~~~-l~i~v~d~~~~ 77 (165)
-.|.|.|+.||.|+..+.+...|||+|.+.+ .++ +|.++.+++||+|| |.|+|.+.+|+-. |+|.|+|.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 5689999999999977667778999999763 344 45556667999999 9999999998855 89999999999
Q ss_pred CCCCeeEEEEEechhhhhhhc
Q 031128 78 SLDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 78 ~~d~~iG~~~i~l~~l~~~~~ 98 (165)
+...|||++..|+..+..+.+
T Consensus 1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred CCcceeeeeecchhhhhccce
Confidence 988999999999999988654
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.34 E-value=1.4e-11 Score=78.83 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred EEEEEEEeeCCCCCC----CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128 8 LRVHVLRGVNLAVRD----VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 82 (165)
Q Consensus 8 L~V~v~~a~~L~~~~----~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~ 82 (165)
|.|+|.+|+++.... .+.++|||.+.+++. +.||++ +.||.|||+|.|.+. ....+.+.|||...- ..--
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 679999999998765 567899999999976 788986 589999999999994 466799999998643 4567
Q ss_pred eEEEEEechhhhhhhcc
Q 031128 83 MGDAEFYITPFLEALKM 99 (165)
Q Consensus 83 iG~~~i~l~~l~~~~~~ 99 (165)
||..-+.++++..+.+.
T Consensus 76 i~llW~~~sdi~Ee~Rr 92 (109)
T cd08689 76 VGLLWLRLSDIAEEIRK 92 (109)
T ss_pred eeeehhhHHHHHHHHHH
Confidence 89999999999886543
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.15 E-value=4.9e-12 Score=103.31 Aligned_cols=116 Identities=26% Similarity=0.443 Sum_probs=88.6
Q ss_pred cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------------------------eEEecccccCCCCCeE
Q 031128 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------------------------QKLKTRVVKNNVNPEW 52 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------------------------~~~~T~~~~~~~~P~w 52 (165)
.-.+.|.+..|++|..++ +|.+|||+...+.. -.+-|++.++|+||+|
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 334566778899999988 89999999987631 0134678888999999
Q ss_pred ecEEEEEEeCCC-CcEEEEEEeCCCC---------------------------------CC---CCeeEEEEEechhhhh
Q 031128 53 NEDLTLSISDSN-LPIKLTVYDKDTF---------------------------------SL---DDKMGDAEFYITPFLE 95 (165)
Q Consensus 53 ~e~f~f~~~~~~-~~l~i~v~d~~~~---------------------------------~~---d~~iG~~~i~l~~l~~ 95 (165)
+|.|.|.+.+-. ..+++.|||+|.- +. |+|+|.+.||+.++-.
T Consensus 193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 999999998755 4599999998741 23 7899999999987765
Q ss_pred hhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce-----eeeEEEEEEEEeC
Q 031128 96 ALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWIDI 159 (165)
Q Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~~ 159 (165)
.. .|.||.|+-.+ +|.++++| |+..
T Consensus 273 ~G--------------------------------------ld~WFkLepRS~~S~VqG~~~Lkl-wLsT 302 (1103)
T KOG1328|consen 273 DG--------------------------------------LDQWFKLEPRSDKSKVQGQVKLKL-WLST 302 (1103)
T ss_pred ch--------------------------------------HHHHhccCcccccccccceEEEEE-EEee
Confidence 32 17888887543 79999998 6543
No 116
>PLN02352 phospholipase D epsilon
Probab=99.13 E-value=8.8e-10 Score=91.97 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=88.1
Q ss_pred ccEEEEEEEEEeeCCCCC----C--CCCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031128 4 LMGLLRVHVLRGVNLAVR----D--VVSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKD 75 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~----~--~~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~ 75 (165)
..|.|.++|.+|+-+... . ....+||+.|.+++.+ .|| .+..||.|+|.|.+.+.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 358999999999843221 1 1123999999999755 477 55679999999999998877 679999988
Q ss_pred CCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce----ee-eE
Q 031128 76 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VG-EV 150 (165)
Q Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G-~l 150 (165)
.-.+||.+.+|+.++..+.. .-+.|+++-+.. .| +|
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~------------------------------------~~~~~~~~~~~~~~p~~~~~~ 123 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEAS------------------------------------FINGFFPLIMENGKPNPELKL 123 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCc------------------------------------ccceEEEcccCCCCCCCCCEE
Confidence 35799999999999887532 117777766543 34 99
Q ss_pred EEEEEEEeCCCC
Q 031128 151 KIQLEWIDIPGS 162 (165)
Q Consensus 151 ~l~l~~~~~~~~ 162 (165)
++.++|.|+...
T Consensus 124 ~~~~~~~~~~~~ 135 (758)
T PLN02352 124 RFMLWFRPAELE 135 (758)
T ss_pred EEEEEEEEhhhC
Confidence 999999998765
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.09 E-value=2.7e-11 Score=99.11 Aligned_cols=91 Identities=29% Similarity=0.371 Sum_probs=78.8
Q ss_pred cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------eEEecccccCCCCCeEecEEEEEEeCCC-----CcEEEEE
Q 031128 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------QKLKTRVVKNNVNPEWNEDLTLSISDSN-----LPIKLTV 71 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------~~~~T~~~~~~~~P~w~e~f~f~~~~~~-----~~l~i~v 71 (165)
...|.|.|+.|+++.+.+ +|.+||||+|.++. ..++|+++.+++||+|+|.|.|.+.... ..+.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 456778889999999988 99999999999984 3569999999999999999999996432 2389999
Q ss_pred EeCCCCCCCCeeEEEEEechhhhh
Q 031128 72 YDKDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 72 ~d~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
+|+|-++.++|-|++.+.|+++-.
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eccceecccccchHHHHhhCCCCC
Confidence 999999999999999999987654
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-09 Score=89.03 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=66.0
Q ss_pred EEeeCCCCCCCCCCCcEEEEEECCeE----EecccccCCCCCeEecEEEEEEeCC---------------C-CcEEEEEE
Q 031128 13 LRGVNLAVRDVVSSDPYVVIKMGKQK----LKTRVVKNNVNPEWNEDLTLSISDS---------------N-LPIKLTVY 72 (165)
Q Consensus 13 ~~a~~L~~~~~~~~dpyv~v~~~~~~----~~T~~~~~~~~P~w~e~f~f~~~~~---------------~-~~l~i~v~ 72 (165)
++++.+.+..++.+|||+.+...+.. .+|++.+++.+|.|+|.|.|.+..+ + ..|++++|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 44555555556779999999987543 5999999999999999999988644 1 24889999
Q ss_pred e-CCCCCCCCeeEEEEEechhhhhh
Q 031128 73 D-KDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 73 d-~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
+ ++....+.|+|++.+++......
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~~ 242 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQK 242 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhhc
Confidence 9 56666799999999999887743
No 119
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.94 E-value=7.1e-10 Score=93.40 Aligned_cols=88 Identities=26% Similarity=0.418 Sum_probs=79.1
Q ss_pred cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEeCCCCCCC
Q 031128 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQK--LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDKDTFSLD 80 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~~~~~~d 80 (165)
...++|++++|.+|.+.| .|.+|||+.+.++++. -++..+.+++||+|++.|.+.+..+... ++++|||+|..++|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 456779999999999999 9999999999999876 4778899999999999999988777654 89999999999999
Q ss_pred CeeEEEEEechh
Q 031128 81 DKMGDAEFYITP 92 (165)
Q Consensus 81 ~~iG~~~i~l~~ 92 (165)
+.||+..++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999975
No 120
>PLN02964 phosphatidylserine decarboxylase
Probab=98.72 E-value=3.4e-08 Score=81.92 Aligned_cols=91 Identities=16% Similarity=0.384 Sum_probs=76.7
Q ss_pred CCcccEEEEEEEEEeeCCCCCCCCCCCcE-EEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEeCCCCC
Q 031128 1 MENLMGLLRVHVLRGVNLAVRDVVSSDPY-VVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDKDTFS 78 (165)
Q Consensus 1 ~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~~~~~ 78 (165)
+|+..|.+.+++++|+ ++ ..|+| +.+++|.+.++|.+.+++.||+||+...|.+...+.. .+|.|||++.++
T Consensus 49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 4678899999999987 22 24776 5577899999999999999999999999998765544 699999999999
Q ss_pred CCCeeEEEEEechhhhhhh
Q 031128 79 LDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~~~ 97 (165)
+++++|.+.++|.++..+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHHhhhheeecHhhccHHH
Confidence 9999999999887766643
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.65 E-value=2.5e-08 Score=85.61 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=76.6
Q ss_pred cEEEEEEEEEeeCCCCC-CCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEeC
Q 031128 5 MGLLRVHVLRGVNLAVR-DVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDK 74 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d~ 74 (165)
.|+|.|-|.-|++|+-. +...+||||+.++.. .+.||++++++.+|.|||...+.-.. .+..|+++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57899999999999544 366799999999873 46799999999999999998876221 125699999999
Q ss_pred CCCCCCCeeEEEEEechhhhhhh
Q 031128 75 DTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
+.+....++|.+.|+|.++....
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~k 1625 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLK 1625 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhh
Confidence 99989999999999998766544
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.6e-07 Score=74.90 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=77.6
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------QKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK 74 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~ 74 (165)
..++|.|+.|.+|.-...|.--|||.|.+-+ +++.|+...++..|.+||+|.|.+.+.. ..|.|.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 4577889999999887777889999998752 4567888888899999999999987643 3499999999
Q ss_pred CCCCCCCeeEEEEEechhhhhhhc
Q 031128 75 DTFSLDDKMGDAEFYITPFLEALK 98 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~ 98 (165)
.-...|..+|-+.++|.++....+
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCc
Confidence 888789999999999999988543
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=5.4e-07 Score=68.24 Aligned_cols=88 Identities=30% Similarity=0.342 Sum_probs=73.6
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK 74 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~ 74 (165)
...-+.|+++.+..|...+ .+.+||||...+.. .+.+|.+.+++.+|.|+++|.|.+...+ ..+.|.|||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 3456889999999999998 89999999998762 3678999999999999999999987654 3489999999
Q ss_pred CCCCCCCeeEEEEEech
Q 031128 75 DTFSLDDKMGDAEFYIT 91 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~ 91 (165)
+.-+..+++|-....+.
T Consensus 311 ~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCcCccCCCccccccc
Confidence 98878899988765543
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.33 E-value=2.9e-06 Score=56.35 Aligned_cols=90 Identities=27% Similarity=0.417 Sum_probs=67.6
Q ss_pred EEEEEEEeeCCCCC-------C-------CCCCCcEEEEEEC----CeEEecccccCCCCCeEecEEEEEEe-----CC-
Q 031128 8 LRVHVLRGVNLAVR-------D-------VVSSDPYVVIKMG----KQKLKTRVVKNNVNPEWNEDLTLSIS-----DS- 63 (165)
Q Consensus 8 L~V~v~~a~~L~~~-------~-------~~~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~~~-----~~- 63 (165)
|.|.|.+|.+|... + .-.-|+||++.+. .+..+|+++.++..|.|+..++|.+. +.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46778888887632 1 1135899999954 46789999999999999999999875 11
Q ss_pred ----------CCcEEEEEEeCCCC----------CCCCeeEEEEEechhhhhhh
Q 031128 64 ----------NLPIKLTVYDKDTF----------SLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 64 ----------~~~l~i~v~d~~~~----------~~d~~iG~~~i~l~~l~~~~ 97 (165)
...+.|+||+...- .+|-+||.+.||+.++....
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 13589999987542 24568999999999988754
No 125
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.3e-06 Score=67.31 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=76.9
Q ss_pred cccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEe-C
Q 031128 3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-K 74 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d-~ 74 (165)
+.+|.+.|.|++|++|..+. ...++|||+|++.. .+.+|+...++..|.+-+...|.-..+...|.+.||. .
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 35788999999999998776 33789999999763 3568999999999988888888887777889999995 6
Q ss_pred CCCCCCCeeEEEEEechhhhhh
Q 031128 75 DTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
.++-.+.|+|.+.+-+.++.-.
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred cccchHHHhhHHHHHhhhhccc
Confidence 6777788999998888776553
No 126
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.08 E-value=7.1e-06 Score=50.85 Aligned_cols=87 Identities=10% Similarity=0.159 Sum_probs=64.4
Q ss_pred EEEEEEeeCCCCCC--CCCCCcEEEEEE--C-CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCC
Q 031128 9 RVHVLRGVNLAVRD--VVSSDPYVVIKM--G-KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLD 80 (165)
Q Consensus 9 ~V~v~~a~~L~~~~--~~~~dpyv~v~~--~-~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~~d 80 (165)
-|+++++++|.-.. ...+.-|++--+ . ....+|.+.+.+.||.|.|+|.|.+..- +-.|.|.|++ .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 37899999987665 223344655333 2 3467899988999999999999987542 3348899998 45578
Q ss_pred CeeEEEEEechhhhhhh
Q 031128 81 DKMGDAEFYITPFLEAL 97 (165)
Q Consensus 81 ~~iG~~~i~l~~l~~~~ 97 (165)
+.||.+.+.++++-.+.
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 89999999998876544
No 127
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=1.7e-06 Score=65.66 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=75.6
Q ss_pred cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeC
Q 031128 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDK 74 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~ 74 (165)
...+..++..|++|.+++ .+..|||++..+.. .+.+|++..++.||.|+|...+..... .+.+.+.|.|+
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 346788999999999999 88999999999873 357889999999999999876654321 14488999999
Q ss_pred CCCCCCCeeEEEEEechhhhhhh
Q 031128 75 DTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
+.+...+++|+..+++..+....
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred cccccccCcccchhhhhccChhh
Confidence 99988999999998888776543
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.91 E-value=6.2e-05 Score=63.85 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=68.9
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEecccccCC-CCCeEec-EEEEE-EeCCC-CcEEEEEEe
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------QKLKTRVVKNN-VNPEWNE-DLTLS-ISDSN-LPIKLTVYD 73 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~-~~P~w~e-~f~f~-~~~~~-~~l~i~v~d 73 (165)
.+.+.|+|++|.-|..+.. ..||.|.+-+ ..++|++...+ .||+|+| .|.|. +.-++ ..|+|.||+
T Consensus 702 A~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred EeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 5789999999999987763 4799999752 46788888764 9999996 47775 33344 449999999
Q ss_pred CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128 74 KDTFSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
.+ .++||+-.+|+..+..+..+
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred cC----CceeeeeccchhcccCccee
Confidence 74 57999999999888776654
No 129
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.89 E-value=3.3e-05 Score=62.50 Aligned_cols=83 Identities=33% Similarity=0.573 Sum_probs=66.5
Q ss_pred EEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEecccccCCCCCeEecEEEEEE-----eCCCCcEEEEEEeCCCCCC
Q 031128 12 VLRGVNLAVRD-VVSSDPYVVIKMG--K----QKLKTRVVKNNVNPEWNEDLTLSI-----SDSNLPIKLTVYDKDTFSL 79 (165)
Q Consensus 12 v~~a~~L~~~~-~~~~dpyv~v~~~--~----~~~~T~~~~~~~~P~w~e~f~f~~-----~~~~~~l~i~v~d~~~~~~ 79 (165)
..+|++|.+++ ++++|||..+.-- . ..++|.+++++++|.|.+ |.+.. .++...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 35578888888 8999999887643 1 356999999999999987 44433 2334669999999999989
Q ss_pred CCeeEEEEEechhhhh
Q 031128 80 DDKMGDAEFYITPFLE 95 (165)
Q Consensus 80 d~~iG~~~i~l~~l~~ 95 (165)
+++||++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999988864
No 130
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=61.76 Aligned_cols=92 Identities=26% Similarity=0.434 Sum_probs=69.1
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---C---------CcEEE
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---N---------LPIKL 69 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~---------~~l~i 69 (165)
|.+.|+++++++-.. ..-.|.|+.+.+- .++.+|.+++++.+|.|+|.|.+.+... . .-++|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 456667777665443 2335678887754 3567899999999999999999998652 1 23899
Q ss_pred EEEeCCC-CCCCCeeEEEEEechhhhhhhcc
Q 031128 70 TVYDKDT-FSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 70 ~v~d~~~-~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
++|++.. +.+|.++|.+.+.|..+.....+
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Len~cei 479 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILENMCEI 479 (523)
T ss_pred EEeeccccccccceeceeeeeehhhhcccch
Confidence 9999865 46799999999999888775544
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.82 E-value=2.3e-06 Score=72.88 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=69.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC----C-----C-CcEEEEEEeCCC
Q 031128 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD----S-----N-LPIKLTVYDKDT 76 (165)
Q Consensus 8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~----~-----~-~~l~i~v~d~~~ 76 (165)
+++.+.+|+.|...+ .+.+|||..+.+.++.+.|.++.++++|.|++...|.-.. + + ..+.+++||.++
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 445566788888877 7789999999999999999999999999999999885321 1 1 227899999999
Q ss_pred CCCCCeeEEEEEechhh
Q 031128 77 FSLDDKMGDAEFYITPF 93 (165)
Q Consensus 77 ~~~d~~iG~~~i~l~~l 93 (165)
.+.++|+|+......-+
T Consensus 288 ~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 288 SGINEFKGRKKQRPYVM 304 (1105)
T ss_pred hchHHhhcccccceEEE
Confidence 99999999976654433
No 132
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.53 E-value=0.0055 Score=42.36 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=68.6
Q ss_pred ccEEEEEEEEEeeCCCCCCC---CCCCc--EEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC--------------
Q 031128 4 LMGLLRVHVLRGVNLAVRDV---VSSDP--YVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-------------- 64 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~---~~~dp--yv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-------------- 64 (165)
..-.|.+.|..++-...... +..+. .+-+.+++++++|+.+..+.+|.|+|.|-|++....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 34567888888875432211 33333 344556799999999999999999999999986432
Q ss_pred CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 65 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 65 ~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
..+++.|.-.+..+...++|.-.++...+....
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 358888888777766689999999888777644
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.51 E-value=0.0021 Score=45.42 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=70.1
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEE--ECCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD 75 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~--~~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~ 75 (165)
..++|+|+.+.++...+ ...+-||.+. .|++ ...|+...-...+.|||.+.|++.-.+ ..|.|+||+..
T Consensus 8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 46899999999998622 2355677764 3443 335555554567999999999875432 45999999865
Q ss_pred CCC----------------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCC
Q 031128 76 TFS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR 117 (165)
Q Consensus 76 ~~~----------------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~ 117 (165)
... .+..||.+.++|-+... .+..|...+.+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------~Lr~G~~~L~lW~~~ 137 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------QLKTGDHTLYMWTYA 137 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc-------hhhcCCeEEEecCCC
Confidence 321 24689999999987443 345677666666643
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.48 E-value=0.0022 Score=44.60 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=68.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCeE----EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQK----LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD 75 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~ 75 (165)
..++|+|+.+.++.... ..+-||.+.+ +++. ..|+.+.. .++.|||.+.|++.-.+ ..|.|+||+..
T Consensus 8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 46889999999887653 3577888754 4432 24444433 67999999999875433 45999999965
Q ss_pred CCC----CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128 76 TFS----LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS 116 (165)
Q Consensus 76 ~~~----~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 116 (165)
... ....+|.+.++|-+... .+..|.....+.+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~-------~Lr~G~~~L~lW~~ 122 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD-------TLVSGKMALNLWPV 122 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC-------hhhCCCEEEEEEcC
Confidence 321 22469999999987433 44567776666664
No 135
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.37 E-value=0.0027 Score=43.97 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=68.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD 75 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~ 75 (165)
..++|++....++........+-|+.+++ +++ ...|.....+.++.|||.+.|++.-. +..|.|+||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45778888888776533334566777654 433 22343333346799999999987532 245999999976
Q ss_pred CCC--CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128 76 TFS--LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS 116 (165)
Q Consensus 76 ~~~--~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 116 (165)
..+ .+..||.+.++|-+... .+..|...+.+.+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------~L~~G~~~l~lW~~ 123 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------KLRQGMITLNLWPG 123 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------cEecCCEEEeccCC
Confidence 543 46899999999987433 44567666666654
No 136
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.35 E-value=0.015 Score=41.20 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=66.3
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCeE---EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCC
Q 031128 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQK---LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDT 76 (165)
Q Consensus 6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~ 76 (165)
..++|+|..+.++.........-||.+.+ +++. .+|....-+.++.|||.+.|++.-.+ ..|.|+||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 35788888887433222222345666543 3332 25555555677999999999876433 459999998532
Q ss_pred CC----------------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCC
Q 031128 77 FS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR 117 (165)
Q Consensus 77 ~~----------------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~ 117 (165)
.+ .+..||.+.+.|-+... .+..|...+.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~-------~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF-------LLRTGEYVLHMWQIS 139 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC-------ceecCCEEEEEecCC
Confidence 11 25678889988876433 456788777777754
No 137
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.24 E-value=0.0033 Score=43.82 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCCCCCCCeeEEEEEechhh
Q 031128 24 VSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDTFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 24 ~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~~d~~iG~~~i~l~~l 93 (165)
..++-||.+.+ +++ ..+|....-+..+.|||...|++.-.+ ..|.|+||+.+..++...+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34678888765 333 235555555667899999999986433 45999999987655677999999999764
Q ss_pred hhhhcccccCCCCceEEEEEeeCC
Q 031128 94 LEALKMRLEGLPNGTIVTKIQPSR 117 (165)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~~~~~~ 117 (165)
.. .+..|...+.+++..
T Consensus 108 ~g-------~Lr~G~~~l~lw~~~ 124 (159)
T cd08397 108 DG-------TLRRGRQKLRVWPDV 124 (159)
T ss_pred CC-------cEecCCEEEEEEeCC
Confidence 22 455677666666543
No 138
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.06 E-value=0.046 Score=37.04 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=60.7
Q ss_pred ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeE---EecccccC-CCCCeEecEEEEEEeC---C------CCcEEEE
Q 031128 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQK---LKTRVVKN-NVNPEWNEDLTLSISD---S------NLPIKLT 70 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~---~~T~~~~~-~~~P~w~e~f~f~~~~---~------~~~l~i~ 70 (165)
..-.+.|++.+..+++.. ....||....++.. ..|..... +..-.|++.|.+.+.- . ...+.|.
T Consensus 5 ~kf~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eeEEEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 445678899999988762 23456666666443 44544333 4568999999987631 1 1238899
Q ss_pred EEeCCCCCCCCeeEEEEEechhhhhh
Q 031128 71 VYDKDTFSLDDKMGDAEFYITPFLEA 96 (165)
Q Consensus 71 v~d~~~~~~d~~iG~~~i~l~~l~~~ 96 (165)
|+....-++...+|.+.++|++....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc
Confidence 98875333336999999999998874
No 139
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.02 E-value=0.016 Score=45.30 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=70.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC--------CCcEEEEEEeCC-CCC
Q 031128 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS--------NLPIKLTVYDKD-TFS 78 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~--------~~~l~i~v~d~~-~~~ 78 (165)
+.|.|++|+|.+... ...-.+..++++....|..+..+..|.||..+.+++... ..+|++++|..+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 678999999998763 345678889999999999998999999999999987532 245999999987 556
Q ss_pred CCCeeEEEEEechhh
Q 031128 79 LDDKMGDAEFYITPF 93 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l 93 (165)
..+.||.+.++|...
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 788999999999877
No 140
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.90 E-value=0.019 Score=40.46 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=70.0
Q ss_pred ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE--CCeE----Eeccccc--C--CCCCeEecEEEEEEeCCC----CcEE
Q 031128 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM--GKQK----LKTRVVK--N--NVNPEWNEDLTLSISDSN----LPIK 68 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~--~~~~----~~T~~~~--~--~~~P~w~e~f~f~~~~~~----~~l~ 68 (165)
....+.|+|.++.+++..- ....+-|+.+.+ +++. ..|+... + ...+.|||.+.|++.-.+ ..|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 3456889999999998765 334677887754 4432 2443221 1 235789999999875322 4499
Q ss_pred EEEEeCCCCC---------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128 69 LTVYDKDTFS---------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS 116 (165)
Q Consensus 69 i~v~d~~~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 116 (165)
|++|+....+ .+..||.+.++|-+... .+..|...+.+.+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~-------~L~~G~~~L~lW~~ 135 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG-------VLRQGSLLLGLWPP 135 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcchh-------hhccCCEEEEeccC
Confidence 9999976543 35799999999987543 34456666666553
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.77 E-value=0.0033 Score=48.02 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=65.3
Q ss_pred cccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128 3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 78 (165)
Q Consensus 3 ~~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~ 78 (165)
...|.|.+.+.++++|.... .-+.+-||++..+.+ +.+|.+......-.|.|.|..++.+ .+.+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 46799999999999997554 335688999998865 4467666556777899999988864 446888899988765
Q ss_pred CCCeeEEEEEechhhhh
Q 031128 79 LDDKMGDAEFYITPFLE 95 (165)
Q Consensus 79 ~d~~iG~~~i~l~~l~~ 95 (165)
++++.=...+.+..+..
T Consensus 127 RHKLC~~g~l~~~~v~r 143 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDR 143 (442)
T ss_pred hccccccchhhhhhhhh
Confidence 66554333444444433
No 142
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.74 E-value=0.027 Score=35.30 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhh
Q 031128 26 SDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 93 (165)
Q Consensus 26 ~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l 93 (165)
.+-.+.+.+++. ..+|.-... .+..|++.|.+++.. ...|.|.||-.|. ..+-|-..+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 567888888874 446655433 578899999999964 5679999998764 35677778888873
No 143
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.22 E-value=0.062 Score=36.60 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=48.1
Q ss_pred ecccccCC-CCCeEecEEEEEEeC---C-CCcEEEEEEeCCCCCCC----CeeEEEEEechhhhhhhcccccCCCCceEE
Q 031128 40 KTRVVKNN-VNPEWNEDLTLSISD---S-NLPIKLTVYDKDTFSLD----DKMGDAEFYITPFLEALKMRLEGLPNGTIV 110 (165)
Q Consensus 40 ~T~~~~~~-~~P~w~e~f~f~~~~---~-~~~l~i~v~d~~~~~~d----~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~ 110 (165)
.|....-+ .++.|||.+.|++.- | +..|.|+||+.+..... ..||.+.++|-+... .+..|...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~-------~L~~G~~~ 95 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG-------QLRQGPQK 95 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS-------BBEEEEEE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC-------cccCCCEE
Confidence 56655555 799999999999753 2 24499999997765444 699999999977633 34457776
Q ss_pred EEEeeCC
Q 031128 111 TKIQPSR 117 (165)
Q Consensus 111 ~~~~~~~ 117 (165)
..+.+..
T Consensus 96 L~lW~~~ 102 (142)
T PF00792_consen 96 LSLWPDE 102 (142)
T ss_dssp EE-EET-
T ss_pred EEEEcCC
Confidence 7766654
No 144
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.10 E-value=0.22 Score=35.42 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=38.6
Q ss_pred EEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCCCCC-C--CCeeEEEEEechhhhhhhcccccCCCCceEEE
Q 031128 38 KLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKDTFS-L--DDKMGDAEFYITPFLEALKMRLEGLPNGTIVT 111 (165)
Q Consensus 38 ~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~~~~-~--d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~ 111 (165)
.+.|.+...+.+|.|+|+|.+.+.... ..|.|++++...-. + ...+|.+.++|-+ .+. -...|...+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~-----~i~dg~~~L 132 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGT-----IIQDGEHEL 132 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS------B--SEEEEE
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCe-----EecCCCEEE
Confidence 456777778889999999999986543 23899999865432 1 2699999999976 211 134555555
Q ss_pred EEe
Q 031128 112 KIQ 114 (165)
Q Consensus 112 ~~~ 114 (165)
.++
T Consensus 133 ~v~ 135 (184)
T PF14429_consen 133 PVY 135 (184)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 145
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.89 E-value=0.14 Score=36.72 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=40.9
Q ss_pred eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC-C-CCeeEEEEEech
Q 031128 37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS-L-DDKMGDAEFYIT 91 (165)
Q Consensus 37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~-~-d~~iG~~~i~l~ 91 (165)
..++|-+...+.+|.|+|++.+.+... ...|.|++++..... + ...+|.+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 357888888889999999999988643 234889888754321 1 267899999984
No 146
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.00 E-value=0.13 Score=42.19 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=49.6
Q ss_pred EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCC----CCCCCeeEEEEEechhhhhhhcc
Q 031128 38 KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDT----FSLDDKMGDAEFYITPFLEALKM 99 (165)
Q Consensus 38 ~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~----~~~d~~iG~~~i~l~~l~~~~~~ 99 (165)
..+|.++.+..||.|.+.|.+...... +.|+++++|-+. ....+|+|++...+..+......
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~ 108 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL 108 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence 348899999999999999887765433 558999998664 35678999999999998876554
No 147
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.98 E-value=0.47 Score=34.15 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=40.6
Q ss_pred eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCC-CC---CCeeEEEEEech
Q 031128 37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTF-SL---DDKMGDAEFYIT 91 (165)
Q Consensus 37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~-~~---d~~iG~~~i~l~ 91 (165)
..++|-+...+.+|.|+|++.+.+... +..|.|++++.... .+ ...+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 457888888889999999999988643 24489999875421 12 357899999884
No 148
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=94.77 E-value=0.94 Score=31.76 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=76.9
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEEEC----------Ce-EEecccccC-----CCCCeEecEEEEEEeCCC----CcEE
Q 031128 9 RVHVLRGVNLAVRDVVSSDPYVVIKMG----------KQ-KLKTRVVKN-----NVNPEWNEDLTLSISDSN----LPIK 68 (165)
Q Consensus 9 ~V~v~~a~~L~~~~~~~~dpyv~v~~~----------~~-~~~T~~~~~-----~~~P~w~e~f~f~~~~~~----~~l~ 68 (165)
.=.|..|.+.. ..+-||+..+. .. ...|.+... +..-.||..|++.+.... ..|.
T Consensus 5 ~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 5 IGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 34567777654 34678887763 12 455555432 345779988887765432 3499
Q ss_pred EEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCc-EE-------eeeee
Q 031128 69 LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGK-LV-------QNLFL 140 (165)
Q Consensus 69 i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~-------~~~~~ 140 (165)
|+||..|..+++...|...+.|-.-..... ..+-.|+|.......+-......++. +. .+..+
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~---------~~v~~wrP~~~s~~~~l~~~f~G~~pel~d~~~~~~~~~R~ 150 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLPTQPGRHE---------VEVPTWRPVSGSIRQELRSFFVGGRPELVDPDFIASGESRF 150 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeCCCCceEE---------EEEEEEeecCCCHHHHhhhheecCCceEcCcchhcCccccc
Confidence 999999999999999887766632211111 13455666333222222111111111 10 13334
Q ss_pred eeccceeeeEEEEEEEE
Q 031128 141 RLRNVEVGEVKIQLEWI 157 (165)
Q Consensus 141 ~l~~~~~G~l~l~l~~~ 157 (165)
.++..++|.|+|++..+
T Consensus 151 ~l~t~s~G~V~v~l~vi 167 (168)
T PF07162_consen 151 GLRTESSGSVKVRLNVI 167 (168)
T ss_pred CcEEEeeeEEEEEEEEe
Confidence 55666799999998754
No 149
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.76 E-value=0.31 Score=31.10 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=43.1
Q ss_pred EEEEEEEeeCCCCCCC-CCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128 8 LRVHVLRGVNLAVRDV-VSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD 75 (165)
Q Consensus 8 L~V~v~~a~~L~~~~~-~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~ 75 (165)
+.+.+....+...... ...+-||.+.+ +++ ...|....-...+.|||...|++.-.+ ..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654432 22477888754 443 234554444566999999999875433 44999999854
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.36 E-value=1.2 Score=31.25 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=52.0
Q ss_pred CCCcEEEEEECCeEE-ecccccC--CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhh
Q 031128 25 SSDPYVVIKMGKQKL-KTRVVKN--NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 95 (165)
Q Consensus 25 ~~dpyv~v~~~~~~~-~T~~~~~--~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~ 95 (165)
...-|+++.+.++.. +|+...- ...-.|+|.|.+.+...-+.|.++||.... ..+.+|+.+.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 456789999987544 5544332 344567899999997755679999999887 588999999999865443
No 151
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=93.48 E-value=0.49 Score=30.72 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=36.2
Q ss_pred EEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCC--------CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 29 YVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSN--------LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 29 yv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~--------~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
||.+.+-. +.+.|.++. +.+|.+|-+-.|.+...+ ..+.++++..-.. ....+|.+.+++..+....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence 56666554 445566655 789999988888886432 4599999987633 4679999999999998644
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.13 E-value=1.3 Score=31.36 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=37.8
Q ss_pred EecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCC-----CCCCeeEEEEEechh
Q 031128 39 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTF-----SLDDKMGDAEFYITP 92 (165)
Q Consensus 39 ~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~-----~~d~~iG~~~i~l~~ 92 (165)
++|-+..+ .+|.|+|+|.+.+... ...|.|++++...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999988543 23499999986532 246789999999964
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.37 E-value=0.96 Score=32.17 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=40.6
Q ss_pred eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC------CCCeeEEEEEechh
Q 031128 37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS------LDDKMGDAEFYITP 92 (165)
Q Consensus 37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~------~d~~iG~~~i~l~~ 92 (165)
..+.|.+...+.+|.|+|++.+.+... ...|.|++++-+--. ....+|.+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 356778888889999999999888643 234889998843211 23579999999854
No 154
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=90.80 E-value=0.31 Score=42.38 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCcEEEEEECCeE-EecccccCC-CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 26 SDPYVVIKMGKQK-LKTRVVKNN-VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 26 ~dpyv~v~~~~~~-~~T~~~~~~-~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.++|+.+.+.... .+|....+. .+|.|++.|...+......+.+++-+.+..+....+|.+.++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence 4789988887544 467666666 78999999988887777789999999888866789999999998888753
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.49 E-value=1.5 Score=31.33 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=41.0
Q ss_pred eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC--C-------CCCCeeEEEEEechh
Q 031128 37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT--F-------SLDDKMGDAEFYITP 92 (165)
Q Consensus 37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~--~-------~~d~~iG~~~i~l~~ 92 (165)
....|.+...+.+|.|.|++.+.+... ...|.|+.++-+- - .....+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356778888889999999999887542 2348999998641 1 123579999999865
No 156
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=89.27 E-value=9.4 Score=30.17 Aligned_cols=67 Identities=10% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCcEEEEEECCeEEecccccCCCCCeE--ecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechh
Q 031128 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEW--NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 25 ~~dpyv~v~~~~~~~~T~~~~~~~~P~w--~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~ 92 (165)
....|+.+..|+...+|..+.-+..-.- .+.....+..-+..|++.+|-.... +...||.+.+.++.
T Consensus 73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~ 141 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA 141 (508)
T ss_pred ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH
Confidence 3467999999998888866654433222 3445555655567799999998766 77899999999874
No 157
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.92 E-value=0.18 Score=42.51 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=47.5
Q ss_pred CCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhh
Q 031128 25 SSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL 94 (165)
Q Consensus 25 ~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~ 94 (165)
..+||+.+.+.-. ...+.+.+.+..|.|+++|...+.. +..+.+.|+.......+.+...+.+..++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 4589999888743 3355556778999999999999754 5678899998765545544444444444443
No 158
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=88.56 E-value=5.3 Score=35.25 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEEC----Ce----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK 74 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~----~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~ 74 (165)
.++|+++.+.++.... ..|-+|.|..+ .+ ...|.-+....+|.||+...|++.-.+ ..|.|.||.-
T Consensus 344 ~frI~l~~is~~n~~~--t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLPE--TVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred ceEEEEeeccccCCCc--ccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 4677777776553322 34556666544 32 244555555678999999999886443 3377777754
Q ss_pred C----------------CCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128 75 D----------------TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS 116 (165)
Q Consensus 75 ~----------------~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 116 (165)
. .-+.+..+|.+.+.|-+..+. +..|..+.++.+.
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~-------LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQ-------LRTGEYVLHMWPS 472 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeechhh-------hhcCceEEEecCC
Confidence 1 112345778877777665553 3456665665554
No 159
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=85.06 E-value=0.058 Score=45.17 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=42.3
Q ss_pred ccEEEEEEEEEeeCCCCCC-----CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEe
Q 031128 4 LMGLLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~-----~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~ 61 (165)
..|....+++.|.++++.- ....++++...++.+.++|+....+.+|+|||. .++..
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~ 339 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDS 339 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccc
Confidence 4445555666677665432 245789999999999999999999999999996 54443
No 160
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=80.05 E-value=30 Score=28.05 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=20.7
Q ss_pred CcEEEEEEeCCC-----C-CCCCeeEEEEEech
Q 031128 65 LPIKLTVYDKDT-----F-SLDDKMGDAEFYIT 91 (165)
Q Consensus 65 ~~l~i~v~d~~~-----~-~~d~~iG~~~i~l~ 91 (165)
..|+|.||.-.. + .+.++||.+.++|+
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld 127 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD 127 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec
Confidence 349999998432 2 46789999999996
No 161
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=73.54 E-value=11 Score=32.34 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=58.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC---CCCCee
Q 031128 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF---SLDDKM 83 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~---~~d~~i 83 (165)
.+.|.|++.++|...... .=.||.+.+.+.+.+|..... ..|.|+-+=.|....+-..+++.+|....- -.|+.+
T Consensus 342 smevvvmevqglksvapn-rivyctmevegeklqtdqaea-skp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN-RIVYCTMEVEGEKLQTDQAEA-SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCCC-eeEEEEEEecccccccchhhh-cCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 356778888888765422 236999999998888876543 479999877777776666678888875431 156777
Q ss_pred EEEEEec
Q 031128 84 GDAEFYI 90 (165)
Q Consensus 84 G~~~i~l 90 (165)
|.+.+.-
T Consensus 420 grvil~p 426 (1218)
T KOG3543|consen 420 GRVILQP 426 (1218)
T ss_pred CeEEEec
Confidence 8776654
No 162
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=65.37 E-value=41 Score=22.96 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=52.3
Q ss_pred CCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-------------CCcEEEEEEeCCCCCCCCeeEEEEEech
Q 031128 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-------------NLPIKLTVYDKDTFSLDDKMGDAEFYIT 91 (165)
Q Consensus 25 ~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-------------~~~l~i~v~d~~~~~~d~~iG~~~i~l~ 91 (165)
..|-|..|++-++..+|+......-=.++|.|.|+-... .+.+.++++.+... .+..|+...-++.
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~-~g~iLA~ye~n~r 97 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP-AGEILAYYEENTR 97 (140)
T ss_pred CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC-CCcEEEEEecccc
Confidence 568999999999999998876665556789999874321 24588999887655 3778888887777
Q ss_pred hhhh
Q 031128 92 PFLE 95 (165)
Q Consensus 92 ~l~~ 95 (165)
++.-
T Consensus 98 DfLf 101 (140)
T PF14909_consen 98 DFLF 101 (140)
T ss_pred ceEc
Confidence 7554
No 163
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.28 E-value=8.8 Score=32.85 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=44.7
Q ss_pred CCCcEEEEEEC--CeE----EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCCCCCCCeeEEEEEechh
Q 031128 25 SSDPYVVIKMG--KQK----LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 25 ~~dpyv~v~~~--~~~----~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~~d~~iG~~~i~l~~ 92 (165)
.+|.|+.+.+- +.. .+|+.+.-+..-.|||.+.+.+..++ ..+.+++||.+.-.+-.++|..++.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 45666655543 222 23333322333459999999886544 4599999998777678899999988764
No 164
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=52.63 E-value=32 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.7
Q ss_pred CCcEEEEEEeCCCCCCCCeeEEEEEec
Q 031128 64 NLPIKLTVYDKDTFSLDDKMGDAEFYI 90 (165)
Q Consensus 64 ~~~l~i~v~d~~~~~~d~~iG~~~i~l 90 (165)
.....|++|+.+.+..|++++.+..+-
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~ 37 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDS 37 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECC
Confidence 345789999999877999999877643
No 165
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.54 E-value=54 Score=22.97 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred CeEecEEEEEEeCCC----CcEEEEEEeCCCCCCCCeeEEEEEech
Q 031128 50 PEWNEDLTLSISDSN----LPIKLTVYDKDTFSLDDKMGDAEFYIT 91 (165)
Q Consensus 50 P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~~d~~iG~~~i~l~ 91 (165)
-+||-.++..+.... ..|.+.||..+.+++|...|...+.+-
T Consensus 64 iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 64 IVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred eEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 345554444443222 349999999999999999998877763
No 166
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=47.10 E-value=10 Score=33.66 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=54.0
Q ss_pred ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC--
Q 031128 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-- 76 (165)
Q Consensus 4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~-- 76 (165)
..|.+.+.+.+|..+... .+.||...+. ..+.+|.++.++..|.||+++..++... +.+.+..++++.
T Consensus 757 ~ygflh~~vhsat~lkqs----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~~~~ 831 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEKSTPV 831 (1112)
T ss_pred cccceeeeeccccccccc----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhcccchH
Confidence 346777888888777543 3568877654 3567899999999999999998877532 234444444332
Q ss_pred --------CCCCCeeEEEEEech
Q 031128 77 --------FSLDDKMGDAEFYIT 91 (165)
Q Consensus 77 --------~~~d~~iG~~~i~l~ 91 (165)
..++...|...+.+.
T Consensus 832 ~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 832 EKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred HHhhhccchhhcccccccccccC
Confidence 234555566555554
No 167
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.04 E-value=92 Score=21.07 Aligned_cols=42 Identities=10% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCeEecEEEEEEeCCC----CcEEEEEEeCCCCCCCCeeEEEEEec
Q 031128 49 NPEWNEDLTLSISDSN----LPIKLTVYDKDTFSLDDKMGDAEFYI 90 (165)
Q Consensus 49 ~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~~d~~iG~~~i~l 90 (165)
+..|...+.+.+.... ..|.|+||+.|.+++.+.-|...+-+
T Consensus 54 ~a~~ahpidlh~at~~iqgwprl~~qiw~~dnfgr~eiagyg~~~l 99 (175)
T KOG4028|consen 54 MAHFAHPIDLHFATKGIQGWPRLHFQIWHHDNFGRCEIAGYGFCHL 99 (175)
T ss_pred hhhhcCcceeeeecccccCCceeeeeeeecCcccceeecccceEec
Confidence 3445555555443322 34999999999998888776654433
No 168
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=44.92 E-value=1.6e+02 Score=23.41 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred cEEEEEEEEEeeCCCCCC-------CCCCCcEEEEEECCeEEecccccCCCCCeEe-cEEE-EEEeCC----------CC
Q 031128 5 MGLLRVHVLRGVNLAVRD-------VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWN-EDLT-LSISDS----------NL 65 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~-------~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~-e~f~-f~~~~~----------~~ 65 (165)
.-.|.|++..|.||...- .+....|...++-+....|.......+|.+. ++-. |.+... ..
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~ 270 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIP 270 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCC
Confidence 346788888898876541 1234556666777777777777777788764 2333 555422 13
Q ss_pred cEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128 66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 66 ~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 97 (165)
.|.|.++. .+..||.+.+++..+....
T Consensus 271 ~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 271 KLQIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred CeEEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 46676666 4677999999999987643
No 169
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=36.44 E-value=1.2e+02 Score=19.83 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=49.2
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEE-ecccccCCCCCeE-ecEEEEEEeCC---CCcEEEEEEeCCC-CCC
Q 031128 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKL-KTRVVKNNVNPEW-NEDLTLSISDS---NLPIKLTVYDKDT-FSL 79 (165)
Q Consensus 7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~-~T~~~~~~~~P~w-~e~f~f~~~~~---~~~l~i~v~d~~~-~~~ 79 (165)
.|.++-+.-.++|..+ .+.+.||++|.-+.... .+...... .... ...+.+.+... ...+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 4555555556677664 56789999999887765 33332221 1111 12334433211 3568899999763 335
Q ss_pred CCeeEEEEEechhhh
Q 031128 80 DDKMGDAEFYITPFL 94 (165)
Q Consensus 80 d~~iG~~~i~l~~l~ 94 (165)
.+.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 667777776654444
No 170
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=28.16 E-value=1.7e+02 Score=18.81 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCC---CCCCCeeEEEEEechhhhhhh
Q 031128 65 LPIKLTVYDKDT---FSLDDKMGDAEFYITPFLEAL 97 (165)
Q Consensus 65 ~~l~i~v~d~~~---~~~d~~iG~~~i~l~~l~~~~ 97 (165)
..|.+.+++-.. .....+||.+.+++.+....-
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i 64 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRI 64 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHH
Confidence 347776665432 346679999999999876543
No 171
>KOG1012 consensus Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain [General function prediction only]
Probab=23.52 E-value=94 Score=20.25 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=32.6
Q ss_pred cEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCCC
Q 031128 28 PYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDTF 77 (165)
Q Consensus 28 pyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~-~l~i~v~d~~~~ 77 (165)
+++..........+.....+..|.|++.+.|.+..+.. .+.+...+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (136)
T KOG1012|consen 70 PPVQNSLLKVTQITAEDVETVKPHSEEYVTFFLRNPEKKELLVKAEDDSES 120 (136)
T ss_pred cceeeeeeeeeehhhhhccCCCcchhhhhhhhhcCccccceeEEeccCccc
Confidence 44444444555566666667789999999988876553 466776665443
No 172
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=21.00 E-value=90 Score=18.70 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=31.4
Q ss_pred cEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEE--EEEEeCCCCCCCCeeEEEEEechh
Q 031128 28 PYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIK--LTVYDKDTFSLDDKMGDAEFYITP 92 (165)
Q Consensus 28 pyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~--i~v~d~~~~~~d~~iG~~~i~l~~ 92 (165)
|.-.+++++-...|.. | -.- +-+.++ ++.++ +-+||.+.+.++.-+|-..+|+++
T Consensus 3 Pk~~mslGGYI~Et~F------P---yRN-vIV~Npt~EpIKidvPv~d~~WIE~Hr~LGL~vvPv~~ 60 (78)
T PF10622_consen 3 PKHTMSLGGYIRETPF------P---YRN-VIVGNPTDEPIKIDVPVYDEEWIEEHRKLGLIVVPVSE 60 (78)
T ss_pred ceeEEeeccEEEeccC------C---ccc-EEEeCCCCCCEEeeccccCHHHHHHHHhCCeEEEeccc
Confidence 5666777765555521 1 111 112233 34444 455777777777888888888864
No 173
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=20.38 E-value=1.5e+02 Score=18.48 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=20.6
Q ss_pred cEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC
Q 031128 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG 35 (165)
Q Consensus 5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~ 35 (165)
.|.|.|++..|..-++.+....++|+.+.+.
T Consensus 26 ~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~ 56 (90)
T PF09923_consen 26 FGNLTITLRACVSRPPTENPDTDAFVQVTIR 56 (90)
T ss_pred EccEEEEhhheecCCCCCCcCccceEEEEEc
Confidence 4667888877755444445567788888554
Done!