Query 031129
Match_columns 165
No_of_seqs 192 out of 1640
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 100.0 8.5E-36 1.8E-40 233.3 18.1 147 10-159 12-158 (159)
2 PRK08344 V-type ATP synthase s 100.0 3.6E-33 7.7E-38 218.2 19.0 145 14-158 2-155 (157)
3 PRK09621 V-type ATP synthase s 100.0 5.1E-33 1.1E-37 213.8 18.4 137 14-155 4-140 (141)
4 PRK14893 V-type ATP synthase s 100.0 4.1E-32 8.9E-37 212.9 20.1 151 10-160 6-158 (161)
5 PRK06649 V-type ATP synthase s 100.0 2E-30 4.3E-35 199.1 17.3 135 14-156 3-142 (143)
6 PRK06271 V-type ATP synthase s 100.0 1.5E-29 3.3E-34 206.3 18.0 138 16-161 2-139 (213)
7 PRK06271 V-type ATP synthase s 100.0 3.3E-29 7.1E-34 204.3 19.2 142 12-159 70-211 (213)
8 KOG0233 Vacuolar H+-ATPase V0 99.9 6E-27 1.3E-31 183.9 3.5 154 9-162 36-195 (196)
9 KOG0232 Vacuolar H+-ATPase V0 99.9 8.5E-25 1.8E-29 168.7 10.5 154 7-160 2-155 (156)
10 TIGR01100 V_ATP_synt_C vacuola 99.9 2E-23 4.3E-28 154.0 9.8 107 13-120 1-107 (108)
11 COG0636 AtpE F0F1-type ATP syn 99.7 8.2E-17 1.8E-21 112.9 10.1 70 91-160 6-79 (79)
12 PF00137 ATP-synt_C: ATP synth 99.7 1.4E-16 3E-21 107.9 10.2 66 93-158 1-66 (66)
13 TIGR03322 alt_F1F0_F0_C altern 99.7 2.5E-16 5.4E-21 112.0 9.5 75 87-161 3-81 (86)
14 PRK06876 F0F1 ATP synthase sub 99.7 5.4E-16 1.2E-20 108.4 10.4 71 89-159 3-77 (78)
15 CHL00061 atpH ATP synthase CF0 99.7 5.5E-16 1.2E-20 109.2 10.5 73 89-161 4-80 (81)
16 PRK13468 F0F1 ATP synthase sub 99.7 5.8E-16 1.3E-20 109.3 10.4 74 88-161 3-80 (82)
17 PRK07354 F0F1 ATP synthase sub 99.7 9.2E-16 2E-20 108.1 10.5 73 89-161 4-80 (81)
18 PRK06251 V-type ATP synthase s 99.7 9.6E-16 2.1E-20 112.0 10.2 72 88-159 30-101 (102)
19 PRK13471 F0F1 ATP synthase sub 99.6 2.9E-15 6.4E-20 106.3 10.2 71 88-158 10-84 (85)
20 PRK08482 F0F1 ATP synthase sub 99.6 2.9E-15 6.2E-20 110.1 10.5 74 88-161 26-103 (105)
21 PRK13469 F0F1 ATP synthase sub 99.6 6.5E-15 1.4E-19 103.3 10.2 69 89-158 6-78 (79)
22 PRK07558 F0F1 ATP synthase sub 99.6 7.1E-15 1.5E-19 101.8 9.6 67 91-158 4-74 (74)
23 PF00137 ATP-synt_C: ATP synth 99.6 6.3E-15 1.4E-19 99.8 9.1 66 14-79 1-66 (66)
24 MTH00222 ATP9 ATP synthase F0 99.6 9.2E-15 2E-19 102.0 9.7 69 89-158 4-76 (77)
25 PRK13464 F0F1 ATP synthase sub 99.6 7.7E-15 1.7E-19 106.8 9.6 73 90-162 11-87 (101)
26 PRK05880 F0F1 ATP synthase sub 99.6 3.2E-14 6.9E-19 100.1 10.6 72 89-160 4-79 (81)
27 PRK07159 F0F1 ATP synthase sub 99.5 7.9E-14 1.7E-18 101.5 9.4 67 91-158 29-99 (100)
28 PRK13466 F0F1 ATP synthase sub 99.5 1E-13 2.2E-18 94.1 8.4 57 99-155 5-65 (66)
29 PRK14893 V-type ATP synthase s 99.5 1.7E-13 3.7E-18 107.7 10.5 75 87-161 4-78 (161)
30 PRK13467 F0F1 ATP synthase sub 99.5 1.2E-13 2.7E-18 93.6 8.2 56 100-155 6-65 (66)
31 COG0636 AtpE F0F1-type ATP syn 99.5 1.6E-13 3.5E-18 96.2 9.0 68 13-80 7-78 (79)
32 PRK13471 F0F1 ATP synthase sub 99.5 2.7E-13 5.9E-18 96.2 8.8 66 14-79 15-84 (85)
33 PRK06558 V-type ATP synthase s 99.5 3.9E-13 8.4E-18 105.5 10.1 72 90-161 13-84 (159)
34 PRK06251 V-type ATP synthase s 99.5 3.9E-13 8.5E-18 98.3 9.2 66 14-79 35-100 (102)
35 CHL00061 atpH ATP synthase CF0 99.5 4.2E-13 9E-18 94.5 8.9 66 14-79 8-77 (81)
36 TIGR01260 ATP_synt_c ATP synth 99.4 3.3E-13 7.1E-18 89.5 6.8 53 106-158 2-58 (58)
37 PRK06876 F0F1 ATP synthase sub 99.4 9.6E-13 2.1E-17 92.1 9.5 67 13-79 6-76 (78)
38 PRK13469 F0F1 ATP synthase sub 99.4 6.8E-13 1.5E-17 93.1 8.7 68 11-79 7-78 (79)
39 PRK07874 F0F1 ATP synthase sub 99.4 8.4E-13 1.8E-17 92.6 8.5 63 88-154 13-79 (80)
40 PRK07354 F0F1 ATP synthase sub 99.4 2.1E-12 4.5E-17 91.0 8.9 66 14-79 8-77 (81)
41 PRK08344 V-type ATP synthase s 99.4 2E-12 4.3E-17 101.3 9.5 66 93-158 2-67 (157)
42 PRK13468 F0F1 ATP synthase sub 99.4 6.3E-12 1.4E-16 88.7 9.1 68 12-79 6-77 (82)
43 PRK07558 F0F1 ATP synthase sub 99.4 6.3E-12 1.4E-16 87.1 8.8 65 13-78 5-73 (74)
44 TIGR03322 alt_F1F0_F0_C altern 99.3 1E-11 2.2E-16 88.4 8.9 67 13-79 8-78 (86)
45 PRK08482 F0F1 ATP synthase sub 99.3 9.5E-12 2.1E-16 91.5 8.8 67 13-79 30-100 (105)
46 PRK07159 F0F1 ATP synthase sub 99.3 1.7E-11 3.6E-16 89.4 8.5 65 14-79 31-99 (100)
47 PRK09621 V-type ATP synthase s 99.3 2.1E-11 4.6E-16 94.0 9.4 71 92-162 3-73 (141)
48 MTH00222 ATP9 ATP synthase F0 99.3 3.1E-11 6.8E-16 84.2 8.5 66 13-79 7-76 (77)
49 PRK13464 F0F1 ATP synthase sub 99.3 4E-11 8.7E-16 87.4 8.6 67 14-80 14-84 (101)
50 TIGR01100 V_ATP_synt_C vacuola 99.2 6.8E-11 1.5E-15 87.4 8.7 70 93-162 2-71 (108)
51 PRK13466 F0F1 ATP synthase sub 99.2 8.8E-11 1.9E-15 79.7 7.4 57 20-76 5-65 (66)
52 PRK05880 F0F1 ATP synthase sub 99.2 2E-10 4.3E-15 80.9 9.3 66 14-79 8-77 (81)
53 PRK13467 F0F1 ATP synthase sub 99.2 1.1E-10 2.5E-15 79.1 7.6 56 21-76 6-65 (66)
54 TIGR01260 ATP_synt_c ATP synth 99.1 1.5E-10 3.3E-15 76.7 6.3 53 26-78 1-57 (58)
55 PRK07874 F0F1 ATP synthase sub 99.1 2.2E-10 4.9E-15 80.4 7.1 55 21-75 21-79 (80)
56 PRK06649 V-type ATP synthase s 99.0 2.1E-09 4.6E-14 83.0 8.6 65 13-77 78-142 (143)
57 KOG3025 Mitochondrial F1F0-ATP 98.5 3.9E-07 8.5E-12 68.1 6.2 70 88-158 63-136 (137)
58 KOG0232 Vacuolar H+-ATPase V0 98.4 2.2E-07 4.7E-12 72.3 3.7 71 10-80 82-154 (156)
59 KOG0233 Vacuolar H+-ATPase V0 98.2 9E-08 1.9E-12 75.9 -2.8 73 89-161 38-110 (196)
60 KOG3025 Mitochondrial F1F0-ATP 97.5 0.00021 4.5E-09 53.6 5.2 65 14-79 68-136 (137)
61 PF04284 DUF441: Protein of un 34.7 90 0.002 24.2 4.6 39 102-140 79-117 (140)
62 PF11947 DUF3464: Protein of u 31.4 2E+02 0.0044 22.5 6.2 55 52-111 62-116 (153)
63 TIGR03818 MotA1 flagellar moto 24.4 2.5E+02 0.0054 24.0 6.1 31 45-78 191-221 (282)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=8.5e-36 Score=233.35 Aligned_cols=147 Identities=29% Similarity=0.500 Sum_probs=141.2
Q ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031129 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~ 89 (165)
.+++++++|++++++++++|+++|+++++.+++++.+||||.++|.+++.+++|+++|||+++++++..+++++ +++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~~---~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITPE---LSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---ccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999987542 678
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~ 159 (165)
.+++.++++|+++|+++++||++||+++++++++++||||.|.|+++..+|+|+++||+|+++++++++.
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~ 158 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998775
No 2
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=3.6e-33 Score=218.16 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---C----C-CCcc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG---I----N-PKAK 85 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~---i----~-~~~~ 85 (165)
+.++|++++++++++|+++|+++++++++++.+||||.++|++++.++||+++|||||++|++... . + ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 678999999999999999999999999999999999999999999999999999999998776432 2 1 1123
Q ss_pred cccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP-KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p-~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
++++.+++.++++|+++|++++++|++||+++++++++++||| |+|+++++..+|+|+++||+++++++++.-
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999 999999999999999999999999998754
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=5.1e-33 Score=213.81 Aligned_cols=137 Identities=21% Similarity=0.356 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHH
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~ 93 (165)
++++|++++++++++||+||++++|++++++..|+||.++|.++..++||+|+|||||+++++..++++. ..+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887642 45788
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 94 ~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll 155 (165)
..+++|+.+|+++++||++||+++++++++++||||.++|+++..+++|+++||+|++++++
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 4
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=4.1e-32 Score=212.90 Aligned_cols=151 Identities=24% Similarity=0.450 Sum_probs=139.5
Q ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcccc
Q 031129 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKAKSY 87 (165)
Q Consensus 10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~--~~~~~~ 87 (165)
..+.+.++|++++++++++|+++|+++++.++++++.||||.+++++++.+++|+++||++++++++.++.+ +..+.+
T Consensus 6 ~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~ 85 (161)
T PRK14893 6 LGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGL 85 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 345688999999999999999999999999999999999999999999999999999999999999988532 112357
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~ 160 (165)
+..+++.++++++++|+++++|+++||+++++++++++||||.|.|+++..+++|+++||+|++++++++..+
T Consensus 86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~~~ 158 (161)
T PRK14893 86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVFGG 158 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999887653
No 5
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=2e-30 Score=199.13 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcc-----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~-----~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~ 88 (165)
++++|++++++++++||++|++++|.++.+.+.| |||.+. .++...+|.||+|||||+++++.. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 6899999999999999999999999999999998 999998 899999999999999999999986 256
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 156 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~ 156 (165)
..+++.++++||++|++++.|++.||++++++++.++||||.|+|+++..+|+|+++||+|++++++.
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999998864
No 6
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=1.5e-29 Score=206.30 Aligned_cols=138 Identities=29% Similarity=0.474 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHHHH
Q 031129 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (165)
Q Consensus 16 ~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~~~ 95 (165)
.+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++||++++++++.++.++ ..+|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999987532 379999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 96 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 96 l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
+++|+++|++++ |+++||+++++++++++||||.|.|.++..+++|+++|||++++++++.+.+.
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~ 139 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA 139 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998 88999999999999999999999999999999999999999999999887643
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=3.3e-29 Score=204.34 Aligned_cols=142 Identities=25% Similarity=0.441 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHh
Q 031129 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (165)
Q Consensus 12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~ 91 (165)
+.+.++|++++++++++ +++++++++++.+++.+||||.++|+++..+|+|+++|||+|+++++..+++++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 45899999999999999 789999999999999999999999999999999999999999999999876543 3457
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~ 159 (165)
++.++++|+++|++++ +|++||+++++++++++||||.+.|.++..+++|+++||++++++++++..
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~~ 211 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLGI 211 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999999999999999999999999999999999988753
No 8
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.93 E-value=6e-27 Score=183.90 Aligned_cols=154 Identities=36% Similarity=0.722 Sum_probs=143.7
Q ss_pred Cchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---
Q 031129 9 ETAP-FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA--- 84 (165)
Q Consensus 9 ~~~~-~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~--- 84 (165)
+.+| +|+-+|+++|++|+.+|++||+-..|++..++..|.|++.+|+++.++|||+.+||++++++++..|+++..
T Consensus 36 ~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~ 115 (196)
T KOG0233|consen 36 RTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSK 115 (196)
T ss_pred cCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchh
Confidence 3455 599999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred --ccccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129 85 --KSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 85 --~~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~ 162 (165)
+..++..++..+++|+.+|++.+.+|++.|++|+.+.-++|+||.+|.|.++.++|...+++||+++++++..|..++
T Consensus 116 ~y~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~~~ 195 (196)
T KOG0233|consen 116 AYGAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKASMG 195 (196)
T ss_pred hhccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccccC
Confidence 134688999999999999999999999999999999999999999999999999999999999999999998887654
No 9
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.92 E-value=8.5e-25 Score=168.75 Aligned_cols=154 Identities=70% Similarity=1.137 Sum_probs=147.5
Q ss_pred CCCchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 031129 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (165)
Q Consensus 7 ~~~~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~ 86 (165)
.|.++||+...|++.+..++++|+++|+.+.+...+.+..++||..+|++++++++...+|||++++.++..+++++.+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 37799999999999999999999999999999999999999999999999999999999999999999999999887555
Q ss_pred ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~ 160 (165)
++..+++..+++++.+|++++.+|+.+|.++.......+|||++|..+++..+|.|++++|||++++.+.++.+
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~~ 155 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVGG 155 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987754
No 10
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.90 E-value=2e-23 Score=154.02 Aligned_cols=107 Identities=70% Similarity=1.229 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhH
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~ 92 (165)
|++++|+++++.|+.+|++||+++++.+.+++..++||+++|++++++|||+|+|||||+++++..+++++. +++..++
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 478999999999999999999999997778878888999999999999999999999999999999987642 4789999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 031129 93 YAHLSSGLACGLAGLSAGMAIGIVGDAG 120 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~ 120 (165)
+.++++||++|++++.||+.||++++.+
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999998653
No 11
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.71 E-value=8.2e-17 Score=112.89 Aligned_cols=70 Identities=44% Similarity=0.721 Sum_probs=67.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~ 160 (165)
+++.++++|+.+|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++.++.+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~ 79 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP 79 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 788999999999999999999999999999999999999 9999999999999999999999999998753
No 12
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.71 E-value=1.4e-16 Score=107.95 Aligned_cols=66 Identities=42% Similarity=0.715 Sum_probs=64.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
|+++++++++|++++++++++|+++++++++++||||+++|+++..+++|+++||++++++++++|
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999875
No 13
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.68 E-value=2.5e-16 Score=111.99 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=69.5
Q ss_pred ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
.++..++..+++|+.+|++++++|+|||+++++++|+++|||| ++++++++.+++|+++||+++++++++|..++
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~ 81 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPF 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999997 58999999999999999999999999987653
No 14
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.68 E-value=5.4e-16 Score=108.44 Aligned_cols=71 Identities=25% Similarity=0.451 Sum_probs=66.5
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~ 159 (165)
+..+.+.+++|+++|++++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|..
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~ 77 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFAN 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577999999999999999999999999999999999996 778999999999999999999999999875
No 15
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.68 E-value=5.5e-16 Score=109.15 Aligned_cols=73 Identities=33% Similarity=0.530 Sum_probs=67.5
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
...+++.+++|+++|++++++|+++|+++++++++++|||| +++++++..+++|+++||+++++++++|..+.
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~ 80 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567899999999999999999999999999999999996 77889999999999999999999999998653
No 16
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.67 E-value=5.8e-16 Score=109.25 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=68.6
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
++..+.+++++|+++|++++++|++||+++++++++++|||| ++++++++.+++|+++||+++++++++|..++
T Consensus 3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~ 80 (82)
T PRK13468 3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788999999999999999999999999999999999996 77789999999999999999999999998654
No 17
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.66 E-value=9.2e-16 Score=108.05 Aligned_cols=73 Identities=29% Similarity=0.487 Sum_probs=67.4
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
...+++++++|+++|++++++|++||+++++++++++|||| +++++++..+++|+++||+++++++++|..+.
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p~ 80 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34667999999999999999999999999999999999997 67888999999999999999999999988653
No 18
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.66 E-value=9.6e-16 Score=112.02 Aligned_cols=72 Identities=24% Similarity=0.490 Sum_probs=68.0
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~ 159 (165)
....+.+++++|+.+|++++++|++||+++++++++++||||.+.++++..+++|+++||++++++++++..
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~ 101 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGK 101 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777899999999999999999999999999999999999999999999999999999999999988763
No 19
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.63 E-value=2.9e-15 Score=106.26 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=66.0
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
+.....+++++|+++|++++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777899999999999999999999999999999999997 66699999999999999999999999875
No 20
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.63 E-value=2.9e-15 Score=110.07 Aligned_cols=74 Identities=24% Similarity=0.474 Sum_probs=69.6
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
+...+.+++++|+++|++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|..++
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~ 103 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457788999999999999999999999999999999999996 88889999999999999999999999998765
No 21
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.61 E-value=6.5e-15 Score=103.27 Aligned_cols=69 Identities=39% Similarity=0.644 Sum_probs=64.9
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
+..+++++++|+++ ++++++|+|+|.++++++++++|||| ++++++++.+++|+++||++++++++++.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999 99999999999999999999999996 78888999999999999999999999875
No 22
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.60 E-value=7.1e-15 Score=101.85 Aligned_cols=67 Identities=19% Similarity=0.416 Sum_probs=63.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
.+.+.+++|+++ ++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999998 99999999999999999999999997 99999999999999999999999998874
No 23
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.60 E-value=6.3e-15 Score=99.75 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+.++|++++++++++|+++|+++++.+.+++.+||||.++|++++.+++|+++||+++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999764
No 24
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.60 E-value=9.2e-15 Score=101.97 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=65.2
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
...+.+.+++|+.+ ++++++|+|+|+++++.+|+++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678999999998 99999999999999999999999995 99999999999999999999999999886
No 25
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.60 E-value=7.7e-15 Score=106.83 Aligned_cols=73 Identities=21% Similarity=0.437 Sum_probs=68.3
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~ 162 (165)
..+...+++++.+|++++++|+|+|+++++++|+++|||| ++++++++.+++|+++||+++++++++|+.++.
T Consensus 11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~ 87 (101)
T PRK13464 11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLA 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567899999999999999999999999999999999995 999999999999999999999999999987654
No 26
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.57 E-value=3.2e-14 Score=100.10 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=66.9
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~ 160 (165)
.....+++++|+++|++++++|+|+|+++++++|+++|||| ++++++++.+++|++.+|.+++.+++.+..+
T Consensus 4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p 79 (81)
T PRK05880 4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667999999999999999999999999999999999996 9999999999999999999999999888765
No 27
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.52 E-value=7.9e-14 Score=101.53 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=62.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
..++.+++|+++ ++++++|+|+|.++++++++++|||| ++++++++.+++|+++||++++++++++.
T Consensus 29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 336899999999 99999999999999999999999996 78889999999999999999999999875
No 28
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.51 E-value=1e-13 Score=94.05 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 99 GLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 99 gl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll 155 (165)
++++|++++++|+|+|.++++++|+++|||| ++++++++.+++|+++||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999995 99999999999999999999999875
No 29
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.50 E-value=1.7e-13 Score=107.71 Aligned_cols=75 Identities=31% Similarity=0.527 Sum_probs=70.4
Q ss_pred ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
.+...+++.+++++++|++++++++|+|+++++++++++||||.++++++..+++|+++||+++++++++++.+.
T Consensus 4 ~~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~ 78 (161)
T PRK14893 4 IALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGL 78 (161)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999997654
No 30
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.50 E-value=1.2e-13 Score=93.61 Aligned_cols=56 Identities=30% Similarity=0.375 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 100 LACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL 155 (165)
Q Consensus 100 l~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll 155 (165)
+.+|++++++|+|+|.++++++|+++|||| ++++++++.+++|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788889999999999999999999995 99999999999999999999999875
No 31
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.50 E-value=1.6e-13 Score=96.20 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
-+.+++++++++++++|+++|+++++.+..++.+|||| .++++++..+|+|++++|++++++++.++.
T Consensus 7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999 999999999999999999999999998763
No 32
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.48 E-value=2.7e-13 Score=96.21 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|++++++++++|+++|++.++.+++++++||||.++ ++++..+++|+++||++++++++.+.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999866 68999999999999999999998764
No 33
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.47 E-value=3.9e-13 Score=105.52 Aligned_cols=72 Identities=22% Similarity=0.491 Sum_probs=68.6
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
...+.++++++++++++++|++++|+++++++++.+||||.++|.++..+++|+++|||++++++++++.++
T Consensus 13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~ 84 (159)
T PRK06558 13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999998754
No 34
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.46 E-value=3.9e-13 Score=98.29 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|++++++++++|+++|++.++.+++++++||||.++++++..+|+|+++||+++++|++.+.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999999999999999999999999998764
No 35
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.46 E-value=4.2e-13 Score=94.53 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+..++++++++++++|+++|++.++.+++++++||||.+ +++++..+|.|+++||++++++++.+.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999965 459999999999999999999999876
No 36
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.44 E-value=3.3e-13 Score=89.49 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 106 GLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 106 ~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
++++|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|+
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999996 69999999999999999999999998874
No 37
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.44 E-value=9.6e-13 Score=92.06 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|++++++++++|+++|++.++.+++++++||||..+ ++++..+++|+.+||+|++++++.+.
T Consensus 6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999765 69999999999999999999999875
No 38
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.44 E-value=6.8e-13 Score=93.05 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 11 ~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...+.++|+++++ ++++|+++|++.++++++++++||||.++| +++..+|+|+++||++++++++.+.
T Consensus 7 ~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 7 VMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3347899999999 999999999999999999999999996554 6889999999999999999998764
No 39
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.43 E-value=8.4e-13 Score=92.64 Aligned_cols=63 Identities=38% Similarity=0.637 Sum_probs=55.2
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGII 154 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~l 154 (165)
+...+.+.++. |++++++|+|+|.++++++|+++|||| ++++++++.+++|+.+||+++++|+
T Consensus 13 ~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 13 TTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566665544 566689999999999999999999995 9999999999999999999999986
No 40
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.40 E-value=2.1e-12 Score=91.00 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+.++|++++++++++|+++|+++++.+++++++||||.+ +++++..+|+|+.++|++++++++.+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999974 457999999999999999999998876
No 41
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.39 E-value=2e-12 Score=101.33 Aligned_cols=66 Identities=30% Similarity=0.507 Sum_probs=62.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
|..+++++++|+++++|+||+++++++++++.+||||+++|.++..+++|+++|||||++++++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~ 67 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999998776544
No 42
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.35 E-value=6.3e-12 Score=88.73 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....++|++++++++++|+++|+++++.+++++++||||.++ ++++..+++|+.+||++++++++.+.
T Consensus 6 ~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 6 AVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999755 47788999999999999999998876
No 43
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.35 E-value=6.3e-12 Score=87.12 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
....+|+++++ ++++|+++|++.+..+++++++|||| +++++++..++.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 99999999999999999999999999 6777999999999999999999999865
No 44
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.33 E-value=1e-11 Score=88.38 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....+|++++++++++|+++|++++..+++++++||||.. +++++..++.|+.+||++++++++.+.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999974 558888999999999999999998876
No 45
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=9.5e-12 Score=91.49 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|++++++++++|+++|++.++.+++++++||||..++ +++..+++|+.+||++++++++.+.
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999997655 8999999999999999999999886
No 46
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.29 E-value=1.7e-11 Score=89.38 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|+++++ ++++|+++|++.++.+++++++||||.. +++++..+++|+++||++++++++.+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 9999999999999999999999999974 458899999999999999999998753
No 47
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.29 E-value=2.1e-11 Score=94.00 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=66.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~ 162 (165)
.+.++++++++++++++|+||++.+++++.....|+||.|.|.++..++||+++||||++++++..+.+.+
T Consensus 3 ~~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~ 73 (141)
T PRK09621 3 DMSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG 73 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999877543
No 48
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.27 E-value=3.1e-11 Score=84.23 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
...++|+++++ ++++|+++|+|....+.+++++||||. ++++++..++.|+.+||++++++++.+.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999 999999999999999999999999996 4558999999999999999999998764
No 49
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.25 E-value=4e-11 Score=87.41 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
...++++++++++++|+++|++.+..+.+++++||||. ++++++..++.|+.+||++++++++.+..
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999999999999999999999999996 55699999999999999999999998873
No 50
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.22 E-value=6.8e-11 Score=87.43 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=63.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~ 162 (165)
+.+++..+++++++++|+||+++++..-...-.++||++.|.++..+|+|+++|||||+++++..|.+.+
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~ 71 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK 71 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 5688999999999999999999999766666667799999999999999999999999999999998654
No 51
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.19 E-value=8.8e-11 Score=79.72 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=52.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 031129 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 20 ~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li 76 (165)
+++++++++|+++|++.+..+.+++++||||. ++++++..++.|+.+||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999996 4558999999999999999999985
No 52
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.19 E-value=2e-10 Score=80.89 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
..++|++++++++++|+++|++.+..+++++++||||. ++++++..++.|++.+|.+++.++..+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999996 5569999999999999998888887765
No 53
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.18 E-value=1.1e-10 Score=79.15 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=50.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 031129 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (165)
Q Consensus 21 la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li 76 (165)
++.+++++|+++|++.+..+++++++||||. ++++++..++.|+.+||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677899999999999999999999996 4558999999999999999999986
No 54
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.13 E-value=1.5e-10 Score=76.69 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 26 s~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
+++|+++|++.+..+++++++||||. ++++++..++.|+.+||++++++++++
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 777999999999999999999999865
No 55
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.12 E-value=2.2e-10 Score=80.40 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHH
Q 031129 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI 75 (165)
Q Consensus 21 la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~l 75 (165)
++.+++++|+++|+|.+..+++++++||||. ++++++..++.|+.+||+++++|+
T Consensus 21 ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 21 VGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677999999999999999999999996 455899999999999999999986
No 56
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.00 E-value=2.1e-09 Score=82.96 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~ 77 (165)
-+.+++++++++++..-|++.+++++.+.+++.+||||.+.|+++..+|+|+.++|+|++++++.
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999864
No 57
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=98.48 E-value=3.9e-07 Score=68.06 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=63.5
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p----~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
.+....+++++|... ++..++|.|+|.+.++-+.+.+||| ++|...+++.++.|+.++|.+.++|++++.
T Consensus 63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 467788999999975 7777899999999999999999999 489999999999999999999999999874
No 58
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.42 E-value=2.2e-07 Score=72.34 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=65.9
Q ss_pred chhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 10 ~~~~--~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
+.++ +..+++++.+++++.++++.+++.+++.++...|||+.+..+++..+|.|++++|||+++..+..+.
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555 7789999999999999999999999999999999999999999999999999999999999987653
No 59
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.20 E-value=9e-08 Score=75.95 Aligned_cols=73 Identities=30% Similarity=0.458 Sum_probs=68.7
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
...-|+.++.+++++++.++++||+=..+++-+++--|-|++.+|-++..+|+|+++||++++++++..|...
T Consensus 38 sp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~ 110 (196)
T KOG0233|consen 38 SPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLEN 110 (196)
T ss_pred ChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhcc
Confidence 3466889999999999999999999999999999999999999999999999999999999999999998763
No 60
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=97.51 E-value=0.00021 Score=53.58 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
-.++|++.+. .+..|++.|++....+..-..+|||++ |...++.+++.|+.++|.+-++|++++.
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5689998877 567889999999999999999999986 5557889999999999999999998764
No 61
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=34.67 E-value=90 Score=24.17 Aligned_cols=39 Identities=28% Similarity=0.545 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 031129 102 CGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIF 140 (165)
Q Consensus 102 ~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~ 140 (165)
.|+.++.+|+-....++++++-+..||++..-++++..+
T Consensus 79 ~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIi 117 (140)
T PF04284_consen 79 KGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTII 117 (140)
T ss_pred HHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHH
Confidence 466677778888889999999999999988888777654
No 62
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=31.44 E-value=2e+02 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.070 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHHHHHHhhHHHHHHHHHHHH
Q 031129 52 VMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGM 111 (165)
Q Consensus 52 ~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~~~l~agl~~Gla~~gsgi 111 (165)
..++.+....|-..++--|+++.++..+-.-+ .-....++...++.|++.+|-.+
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~d-----vP~~~~~~~S~~~Fg~gllGisY 116 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSRQIVD-----VPPWAVLLVSLVFFGLGLLGISY 116 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhccccc-----cCchHHHHHHHHHHHHHHHhhhh
Confidence 44577778888888887787777776542211 22333444444455555444333
No 63
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=24.41 E-value=2.5e+02 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=19.8
Q ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 45 GVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 45 ~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~ 78 (165)
+..+|+..++. +..+|.. .+||...+.++..
T Consensus 191 l~~dp~~lG~~-iA~Alv~--TlyGv~lAn~i~~ 221 (282)
T TIGR03818 191 IDGPPEVLGVL-IAAALVG--TFLGILLAYGFVG 221 (282)
T ss_pred cCCCHHHHHHH-HHHHHHH--HHHHHHHHHHHHH
Confidence 33578776553 3444444 4899999988654
Done!