Query 031129
Match_columns 165
No_of_seqs 192 out of 1640
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 15:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 2.1E-36 7.3E-41 235.0 17.0 146 10-158 10-155 (156)
2 2xqu_A C15_RING, ATP synthase 99.7 3.4E-17 1.2E-21 114.6 10.6 74 88-161 4-81 (82)
3 1wu0_A ATP synthase C chain; A 99.7 1.1E-16 3.9E-21 109.3 8.6 66 92-157 2-71 (72)
4 2wgm_A ATP synthase subunit C, 99.7 2.3E-16 8E-21 111.9 10.2 74 88-162 8-85 (89)
5 2x2v_A ATP synthase subunit C; 99.7 3.2E-16 1.1E-20 106.3 9.6 63 95-157 3-69 (69)
6 1a91_A F1FO ATPase subunit C; 99.7 8.6E-16 2.9E-20 106.7 10.2 67 93-159 8-78 (79)
7 2xqu_A C15_RING, ATP synthase 99.6 1.4E-14 4.8E-19 101.2 9.8 73 8-80 3-79 (82)
8 2x2v_A ATP synthase subunit C; 99.5 1.7E-14 5.7E-19 97.8 8.1 62 16-77 3-68 (69)
9 2xnd_J ATP synthase lipid-bind 99.5 1.3E-15 4.5E-20 104.1 2.6 66 91-157 3-72 (72)
10 4f4s_A ATP synthase subunit 9, 99.5 3.1E-14 1.1E-18 97.9 9.1 69 89-158 3-75 (76)
11 1wu0_A ATP synthase C chain; A 99.5 1.8E-14 6.2E-19 98.4 7.7 65 14-78 3-71 (72)
12 1a91_A F1FO ATPase subunit C; 99.5 2.9E-13 1E-17 93.9 9.1 66 14-79 8-77 (79)
13 2wgm_A ATP synthase subunit C, 99.5 2.9E-13 9.9E-18 95.9 8.9 69 11-80 10-82 (89)
14 2bl2_A V-type sodium ATP synth 99.4 6.3E-13 2.2E-17 102.9 9.5 71 90-160 11-81 (156)
15 2xnd_J ATP synthase lipid-bind 99.3 5.5E-13 1.9E-17 91.0 2.7 63 14-77 5-71 (72)
16 4f4s_A ATP synthase subunit 9, 99.2 2.5E-11 8.6E-16 83.3 7.1 67 12-79 5-75 (76)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=100.00 E-value=2.1e-36 Score=235.05 Aligned_cols=146 Identities=26% Similarity=0.487 Sum_probs=140.6
Q ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031129 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~ 89 (165)
.+|+++++|++++++++++|++||+++++.+.+++.+||||.++|++++++|||+++||||++++++.++++++ +++
T Consensus 10 ~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~~---~~~ 86 (156)
T 2bl2_A 10 GGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD---MSV 86 (156)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCTT---CCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998753 578
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
.+++.++++|+++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+++++++++++
T Consensus 87 ~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 87 VQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.73 E-value=3.4e-17 Score=114.56 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=69.8
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~ 161 (165)
.+..+++++++++++|++++++|+++|+++++++++++|||| +|+++++..+++|+++||++++++++++..++
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~ 81 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999998 78889999999999999999999999998654
No 3
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.68 E-value=1.1e-16 Score=109.34 Aligned_cols=66 Identities=27% Similarity=0.482 Sum_probs=62.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~ 157 (165)
+++++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999998 7777999999999999999999999876
No 4
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.68 E-value=2.3e-16 Score=111.88 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=69.8
Q ss_pred cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~ 162 (165)
++..+++++++|+++ ++++++|++||+++++++++++|||| +|+++++..+++|+++||+++++++++++.++-
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~ 85 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFV 85 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999 99999999999999999999999998 699999999999999999999999999987753
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.67 E-value=3.2e-16 Score=106.29 Aligned_cols=63 Identities=24% Similarity=0.472 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 95 HLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 95 ~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~ 157 (165)
++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999998 6666999999999999999999999864
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.65 E-value=8.6e-16 Score=106.74 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=63.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~ 159 (165)
+..+++++.+|++++++|+++|+++++++++++|||| +|++++++.+++|+++||++++++++++..
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 78 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999998 888899999999999999999999998753
No 7
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.57 E-value=1.4e-14 Score=101.24 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129 8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 8 ~~~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
..+...+.++|++++++++++|+++|+++++.+++++.+||||. ++++++..+|+|+++||++++++++.+..
T Consensus 3 ~~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 3 SNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555689999999999999999999999999999999999995 56699999999999999999999998764
No 8
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.55 E-value=1.7e-14 Score=97.79 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHH
Q 031129 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 16 ~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~ 77 (165)
++|++++++++++|+++|+++++.+++++.+||||.++| +++..+|+|+++||++++++++.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999996555 99999999999999999999985
No 9
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.55 E-value=1.3e-15 Score=104.08 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=60.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~ 157 (165)
++++++++|+++ ++++++|+++|+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788999999 99999999999999999999999996 7789999999999999999999998764
No 10
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.54 E-value=3.1e-14 Score=97.87 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=64.2
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p----~l~~~~~i~~a~~E~~~I~glvia~ll~~~ 158 (165)
+..+.+++++|++. ++..++|+|+|.+.++.+++++||| ++|++++++.++.|+.+||+|+++++++|-
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55778999999997 9999999999999999999999999 499999999999999999999999999874
No 11
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.54 E-value=1.8e-14 Score=98.39 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHh
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~ 78 (165)
+.++|++++++++++|+++|+++++.+++++.+||||.++| +++..+|+|+++||++++++++.+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999996555 999999999999999999999865
No 12
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.46 E-value=2.9e-13 Score=93.90 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
+..++++++.+++++|+++|++.++.+++++++||||. ++++++..+|+|+++||+|++++++.+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999994 5569999999999999999999998764
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.46 E-value=2.9e-13 Score=95.89 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 11 ~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i 80 (165)
...+.++|+++++ ++++|+++|+++++.+++++++||||. ++++++..+|+|+++||++++++++.+..
T Consensus 10 ~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 10 VLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999 999999999999999999999999995 88899999999999999999999999864
No 14
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.42 E-value=6.3e-13 Score=102.92 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=68.2
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~ 160 (165)
...+.+++++++++++++++++|+++++++++++.+||||+++|.++..+++|+++|||++++++++++.+
T Consensus 11 ~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~ 81 (156)
T 2bl2_A 11 GMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG 81 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999876
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.31 E-value=5.5e-13 Score=91.01 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHH
Q 031129 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~ 77 (165)
+.++|+++++ ++++|+++|+++++.+++++++||||.+ +++++..+|+|+++||+|+++++++
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999 9999999999999999999999999854 4689999999999999999999875
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.22 E-value=2.5e-11 Score=83.33 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~ 79 (165)
....++|++++. ++.+|+++|+|.+..+.+++++||||. ++.+++.+++.|+.++|+|+++|++++.
T Consensus 5 ~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 5 LAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446789999998 889999999999999999999999985 5558999999999999999999999764
Done!