BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031130
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
          Length = 351

 Score = 30.0 bits (66), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 85  ELTLKVRGEWNIREEKKMVKGHIDIPEFSFGELD 118
           EL  K  G WNI  +KK  +G+I I + S G LD
Sbjct: 319 ELIFKYVGRWNICYQKKFHQGNISIHQIS-GYLD 351


>pdb|2NQW|A Chain A, Structure Of The Transporter Associated Domain From
           Pg_0272, A Cbs Domain Protein From Porphyromonas
           Gingivalis
          Length = 93

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 85  ELTLKVRGEWNIREEKKM----VKGHIDIPEFSFGELDD 119
           EL  KV G+ +   E K     V+ ++D+PE +FGEL D
Sbjct: 6   ELPFKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGD 44


>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
           Fulgidus Xpb
          Length = 237

 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 27  WEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSN---CVGDAFLVTVRNKKRVGYN 83
           ++EK+L +W  D+   ++   GS +     A I E+S     V     +  + K+R+G  
Sbjct: 97  YQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF 156

Query: 84  YELTLKVRGEWN--IREEKKMVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQIS 141
            E   +  GE++  I+E K +     D    +  +L +  M +   E   L  E  +QI+
Sbjct: 157 GE---EYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIA 213

Query: 142 QDLKMFLQPVREKL-LLFEQE 161
           Q   M + P R  L   FE+E
Sbjct: 214 Q---MSIAPFRLGLTATFERE 231


>pdb|2OTB|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
           In The Fluorescent State
 pdb|2OTB|B Chain B, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
           In The Fluorescent State
 pdb|2OTE|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
           In The Photobleached State
 pdb|2OTE|B Chain B, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
           In The Photobleached State
          Length = 214

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 4   PDDILSNKSQPATLGSVWNRAGTWEEKSLNKWASD 38
           PDDI +   Q    G  W R  T+E+K + K  SD
Sbjct: 69  PDDIPNYFKQSFPEGYSWERTMTFEDKGIVKVKSD 103


>pdb|3N72|A Chain A, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
           Pfc0270w
 pdb|3N72|B Chain B, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
           Pfc0270w
          Length = 164

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 15/104 (14%)

Query: 29  EKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSNCV---GDAFLVTVRNKKRVGYNYE 85
           E++ NKWA   IK  L+++  +E    K ++T   + +   G+A  V++R  K++  ++E
Sbjct: 19  ERNYNKWAESYIKYNLSNL-KIE----KEDLTIYFDNLQVSGNA-CVSIRKGKQIN-SFE 71

Query: 86  LTLKVRGEW---NIREEKKMVKGHIDIPEFSFGELDDLQMQVRI 126
             +K   EW     +E K    G ++IP+FS   L++    + I
Sbjct: 72  YIIKF--EWLYSKKKEGKDYFGGSVEIPDFSTFSLEENDYAINI 113


>pdb|2HQK|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
           Derived From Clavularia
          Length = 219

 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 4   PDDILSNKSQPATLGSVWNRAGTWEEKSLNKWASD 38
           PDDI +   Q    G  W R  T+E+K + K  SD
Sbjct: 69  PDDIPNYFKQSFPEGYSWERTMTFEDKGIVKVKSD 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,899,942
Number of Sequences: 62578
Number of extensions: 190275
Number of successful extensions: 345
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 11
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)