Query 031130
Match_columns 165
No_of_seqs 109 out of 333
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09229 Aha1_N: Activator of 100.0 3E-37 6.5E-42 234.9 12.6 131 29-164 1-133 (137)
2 KOG2936 Uncharacterized conser 100.0 1.2E-29 2.5E-34 213.2 12.8 139 20-164 5-145 (301)
3 COG5580 Activator of HSP90 ATP 99.9 9.7E-27 2.1E-31 188.8 10.0 132 19-164 2-136 (272)
4 PF06145 Corona_NS1: Coronavir 44.6 10 0.00022 21.1 0.6 14 1-14 9-22 (29)
5 PF11619 P53_C: Transcription 41.2 48 0.001 22.4 3.5 45 116-163 13-61 (71)
6 PF09650 PHA_gran_rgn: Putativ 40.2 1.3E+02 0.0027 21.0 6.2 41 102-162 46-86 (87)
7 TIGR02610 PHA_gran_rgn putativ 38.3 1.4E+02 0.0031 21.0 7.1 41 103-163 50-90 (91)
8 PF09070 PFU: PFU (PLAA family 36.0 26 0.00055 26.2 1.8 24 66-91 7-31 (116)
9 PHA00540 hypothetical protein 34.2 46 0.00099 31.1 3.4 46 70-115 301-356 (715)
10 PF09905 DUF2132: Uncharacteri 29.8 38 0.00083 22.7 1.6 12 33-44 52-63 (64)
11 PF05570 DUF765: Circovirus pr 29.3 21 0.00047 19.8 0.3 19 3-21 10-28 (29)
12 PHA02096 hypothetical protein 28.3 44 0.00096 23.7 1.8 40 7-48 17-57 (103)
13 PF02886 LBP_BPI_CETP_C: LBP / 25.8 3.4E+02 0.0074 21.6 14.8 83 64-156 119-205 (238)
14 PF11697 DUF3293: Protein of u 25.4 35 0.00075 23.0 0.8 30 18-47 1-30 (73)
15 PF05596 Taeniidae_ag: Taeniid 23.4 1.3E+02 0.0029 20.0 3.3 20 145-164 44-63 (64)
16 PF09862 DUF2089: Protein of u 22.2 29 0.00063 25.8 -0.0 61 98-163 17-78 (113)
17 PRK10293 acyl-CoA esterase; Pr 20.7 1.8E+02 0.004 21.6 4.1 23 64-87 97-119 (136)
No 1
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity []. ; GO: 0001671 ATPase activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1USV_F 1USU_B 3N72_A.
Probab=100.00 E-value=3e-37 Score=234.89 Aligned_cols=131 Identities=37% Similarity=0.527 Sum_probs=112.5
Q ss_pred ecCCChhHHHHHHHHhccCcee-eecCceEEEEEeeeeEeEEEEEeeeCcEEEEEEEEEEEEEEEEEeecCCeeeEEEEE
Q 031130 29 EKSLNKWASDRIKELLTSVGSV-EFSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHI 107 (165)
Q Consensus 29 EKd~t~Wak~~l~elL~~~~~~-~~~~~~~~i~~v~~v~GdA~v~~rkgKki~~ydl~i~l~w~g~~~~~~~~~~~~G~i 107 (165)
||||++||++||+++|.++. + +.+++.++|++|++|+|||+|++||||+|++|||+|+|+|+|... ++++..++|+|
T Consensus 1 EKd~t~Wak~~l~elL~~~~-~~~~~~~~v~v~~v~~v~GdA~v~~rKGK~i~~fd~~i~l~w~~~~~-~~~~~~~~G~i 78 (137)
T PF09229_consen 1 EKDCTPWAKDRLKELLPGLS-VPEDGDGSVKVTSVKSVEGDASVNQRKGKKIFIFDLKIKLKWEGKLK-DGEEKEVKGTI 78 (137)
T ss_dssp EEETHHHHHHHHHHHHCT-E-C-CSSSCEEEEEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEEEEEC-TTSSEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhccCE-eccCCCcEEEEEEeeeeceEEEEEEEcCcEEEEEEEEEEEEEEEEEc-CCCCcEEEEEE
Confidence 79999999999999999998 8 777789999999999999999999999999999999999999863 24446799999
Q ss_pred EcccccCC-CCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHHhh
Q 031130 108 DIPEFSFG-ELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELKD 164 (165)
Q Consensus 108 ~ipe~s~~-~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL~~ 164 (165)
+|||||++ +.+||+|.|+++++.+..+.++..++ +.+.|.||++|.+|+++|++
T Consensus 79 ~ipe~s~d~~~~d~~~~v~~~~~~~~~~~~~~~v~---~~~~~~i~~~l~~f~~~L~~ 133 (137)
T PF09229_consen 79 EIPEFSSDNDDDDYEFEVTVKDDSPESDALKDAVR---KEGVPQIREKLEQFVKELKE 133 (137)
T ss_dssp EEEEEECCCCTTT---EEEETT-SCCCCCHHHCCC---CHCHHHHHHHHCCHHHHHHH
T ss_pred EecccCCCCCccceEEEEEEcCCCccHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Confidence 99999994 78999999999988776665444444 99999999999999999986
No 2
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.2e-29 Score=213.19 Aligned_cols=139 Identities=25% Similarity=0.296 Sum_probs=125.4
Q ss_pred eecCCC-CeeecCCChhHHHHHHHHhccCceeeecCceEEEEEeeeeEeEEEEEeeeCcEEEEEEEEEEEEEEEEEeecC
Q 031130 20 VWNRAG-TWEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIRE 98 (165)
Q Consensus 20 ~WN~n~-hWeEKd~t~Wak~~l~elL~~~~~~~~~~~~~~i~~v~~v~GdA~v~~rkgKki~~ydl~i~l~w~g~~~~~~ 98 (165)
+=|+|| ||.||||++||+++|.++|.++. ....+..+++++|++++|||.|++||||.|++|||.+++.|.|.. .+
T Consensus 5 ~~n~nNwHW~ekn~~~WS~e~f~q~ls~~~-~~s~~~~~~i~~vs~~~ge~~vn~RKgK~I~~f~l~i~~~~~G~~--~~ 81 (301)
T KOG2936|consen 5 VTNPNNWHWVEKNCSPWSKEYLNQKLSGVS-SLSGPFSCKITEVSSIDGEARVNQRKGKLISLFDLSIELNFEGGE--DG 81 (301)
T ss_pred cCCCccceeccccchhhhhHHHHhhhcccc-cccCcceEEEeeeEeccccccccccccceEEEEEeEEEEEEeccc--cC
Confidence 448999 99999999999999999999997 555557899999999999999999999999999999999999941 35
Q ss_pred CeeeEEEEEEcccccC-CCCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHHhh
Q 031130 99 EKKMVKGHIDIPEFSF-GELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELKD 164 (165)
Q Consensus 99 ~~~~~~G~i~ipe~s~-~~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL~~ 164 (165)
++..++|+++|||+|+ ++.+|++|.|++.+..+....++++++ ++|+|.||+.+.+|+++|+.
T Consensus 82 s~v~~~G~ieiP~lS~en~~~d~e~~vsi~~~~~~~~~l~~l~k---~eg~~~i~e~~~~y~~~L~~ 145 (301)
T KOG2936|consen 82 SGVKYKGKIEIPNLSDENEVSDDEFDVSIFKKGPEGYTLKELVK---KEGIPKIREVMGKYIRELKR 145 (301)
T ss_pred CccccCceecccccchhccCcCceEeeeeccCCcchhHHHHHHH---HhhHHHHHHHHHHHHHHHhc
Confidence 5668999999999999 678899999999999888777778788 99999999999999999974
No 3
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.7e-27 Score=188.79 Aligned_cols=132 Identities=25% Similarity=0.362 Sum_probs=107.9
Q ss_pred ceecCCC-CeeecCCChhHHHHHHHHhccCceeeecCc--eEEEEEeeeeEeEEEEEeeeCcEEEEEEEEEEEEEEEEEe
Q 031130 19 SVWNRAG-TWEEKSLNKWASDRIKELLTSVGSVEFSGG--KAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWN 95 (165)
Q Consensus 19 S~WN~n~-hWeEKd~t~Wak~~l~elL~~~~~~~~~~~--~~~i~~v~~v~GdA~v~~rkgKki~~ydl~i~l~w~g~~~ 95 (165)
++=|||| ||.+|||..|||+||++.|.++. ....++ .++|+.|.+|+||+.|++||||.||+|||.|++.++|+
T Consensus 2 vv~nPnNwHWvdkdc~~WakEyfn~kL~s~~-a~s~egk~~akItqvsSieGD~~VsqRKgKvI~lfDlkIsme~kge-- 78 (272)
T COG5580 2 VVKNPNNWHWVDKDCSAWAKEYFNEKLKSRG-AESHEGKVMAKITQVSSIEGDSNVSQRKGKVICLFDLKISMECKGE-- 78 (272)
T ss_pred cccCCCccccccccccHhHHHHHhhhhcccc-cccccCcceEEEEEeeeecccchhhhccCceeEEEEEEEEEEEEec--
Confidence 4559999 99999999999999999999988 553344 59999999999999999999999999999999999996
Q ss_pred ecCCeeeEEEEEEcccccCCCCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHHhh
Q 031130 96 IREEKKMVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELKD 164 (165)
Q Consensus 96 ~~~~~~~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL~~ 164 (165)
.+++..+.|+|++||+++| ..|++|--...+ .. ..++| .+++|++|+.|++|.+.|..
T Consensus 79 -dgdg~~a~gsi~vpE~a~d-~fDi~ifs~~fe----~~--egLvR---ee~lpk~rq~l~~f~~vllk 136 (272)
T COG5580 79 -DGDGCGARGSISVPEKAED-MFDIEIFSGFFE----EM--EGLVR---EEVLPKGRQVLDVFREVLLK 136 (272)
T ss_pred -cCCcccccccEecchhhcc-cccchhhhchhh----hh--hhhHH---HHHHHHHHHHHHHHHHHHhh
Confidence 2556789999999999985 334443211111 11 12677 99999999999999999864
No 4
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=44.59 E-value=10 Score=21.12 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=10.9
Q ss_pred CCCccccccCCCCC
Q 031130 1 MLSPDDILSNKSQP 14 (165)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (165)
.|.||||+-|..|.
T Consensus 9 ll~pddilhp~nhv 22 (29)
T PF06145_consen 9 LLAPDDILHPFNHV 22 (29)
T ss_pred ecCcccccCcccce
Confidence 37899999887654
No 5
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=41.20 E-value=48 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=25.4
Q ss_pred CCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHH----HHHHHHHHHHh
Q 031130 116 ELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVR----EKLLLFEQELK 163 (165)
Q Consensus 116 ~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir----~~l~~f~~eL~ 163 (165)
.+.||...+++..+.=.-+.+...|+ +.....+| .+|.+|.+.|.
T Consensus 13 ~dGdYrL~itcp~Ke~LlqSIEgmi~---~~A~~vLRnP~~~kLr~~an~Ll 61 (71)
T PF11619_consen 13 LDGDYRLVITCPKKEWLLQSIEGMIK---EAAVEVLRNPNKSKLRQHANNLL 61 (71)
T ss_dssp TTTCEEEEEEESSHHHHHHHHHHHHH---HHHHHHHH-TT-HHHHHHHHHHH
T ss_pred cCCceEEEEecCcHHHHHHHHHHHHH---HHHHHHHhCCcHHHHHHHHHHHH
Confidence 34689999988654322222222334 44455555 57888877663
No 6
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=40.24 E-value=1.3e+02 Score=20.99 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=26.2
Q ss_pred eEEEEEEcccccCCCCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 031130 102 MVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQEL 162 (165)
Q Consensus 102 ~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL 162 (165)
.++|++.| .++.+++++.+ + .+. +.+.+.|.+.+.++...+
T Consensus 46 gv~G~l~V------~~d~v~l~v~L----g-------~Ll---~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 46 GVDGTLDV------ADDHVRLEVKL----G-------FLL---SPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred CceEEEEE------cCCEEEEEEEc----H-------HHH---HHHHHHHHHHHHHHHHhh
Confidence 47899999 34677788775 1 233 456666666666665543
No 7
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=38.29 E-value=1.4e+02 Score=21.05 Aligned_cols=41 Identities=5% Similarity=0.165 Sum_probs=28.9
Q ss_pred EEEEEEcccccCCCCCceEEEEEEecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHHh
Q 031130 103 VKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELK 163 (165)
Q Consensus 103 ~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL~ 163 (165)
++|++.| .++.+++++.+ + .+. ..+.+.|...+.++..++.
T Consensus 50 v~G~l~V------~~d~v~v~v~L----g-------~Ll---~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 50 VDGAVHL------GPQSIRVTAEL----G-------MLL---SAMSGTIKSEIERALDKAL 90 (91)
T ss_pred eeEEEEE------cCCeEEEEEEh----H-------HHH---HHHHHHHHHHHHHHHHHhh
Confidence 7899998 34678888875 1 244 5677778888887776653
No 8
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=36.03 E-value=26 Score=26.15 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred EeEEEEEeeeC-cEEEEEEEEEEEEEE
Q 031130 66 VGDAFLVTVRN-KKRVGYNYELTLKVR 91 (165)
Q Consensus 66 ~GdA~v~~rkg-Kki~~ydl~i~l~w~ 91 (165)
+|+..+ +|.| .++-.|-|+ .-.|.
T Consensus 7 eGq~~~-vr~~~g~veay~Ws-~~~W~ 31 (116)
T PF09070_consen 7 EGQVKM-VRNGNGKVEAYQWS-EGKWE 31 (116)
T ss_dssp ---------------------------
T ss_pred cceEEE-EEcCCCCEEEEEec-CCceE
Confidence 678777 7888 888899999 88885
No 9
>PHA00540 hypothetical protein
Probab=34.24 E-value=46 Score=31.11 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=30.0
Q ss_pred EEEeeeCcEEEEEEEEEEEEEEEE----------EeecCCeeeEEEEEEcccccCC
Q 031130 70 FLVTVRNKKRVGYNYELTLKVRGE----------WNIREEKKMVKGHIDIPEFSFG 115 (165)
Q Consensus 70 ~v~~rkgKki~~ydl~i~l~w~g~----------~~~~~~~~~~~G~i~ipe~s~~ 115 (165)
.--+.=|.||++|||+..=....+ ++.++..--++|++++.++..|
T Consensus 301 enpnkvgtkriifdfe~vdeldvknikkaiyrmiltvdeanliisgslelnninnd 356 (715)
T PHA00540 301 ENPNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLELNNINND 356 (715)
T ss_pred CCCcccCceEEEEeeecchhhhhhhHHHHHHHHheeecccceEEecceEecCcCCc
Confidence 334566899999999875433211 0112344568999999998764
No 10
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=29.76 E-value=38 Score=22.71 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=10.1
Q ss_pred ChhHHHHHHHHh
Q 031130 33 NKWASDRIKELL 44 (165)
Q Consensus 33 t~Wak~~l~elL 44 (165)
|+||+++.+++.
T Consensus 52 TpWAR~KVE~lY 63 (64)
T PF09905_consen 52 TPWAREKVENLY 63 (64)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHhHHHHHHHhc
Confidence 799999998763
No 11
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=29.27 E-value=21 Score=19.77 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=13.4
Q ss_pred CccccccCCCCCCccccee
Q 031130 3 SPDDILSNKSQPATLGSVW 21 (165)
Q Consensus 3 ~~~~~~~~~~~~~~~~S~W 21 (165)
.|.||||..+|+..-.--|
T Consensus 10 apsdils~~pqs~rppgrw 28 (29)
T PF05570_consen 10 APSDILSSKPQSKRPPGRW 28 (29)
T ss_pred CcHHHHhcCccccCCCCCC
Confidence 3789999998877644333
No 12
>PHA02096 hypothetical protein
Probab=28.29 E-value=44 Score=23.69 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=32.0
Q ss_pred cccCCCCCCcccceecCCCCeeecCCC-hhHHHHHHHHhccCc
Q 031130 7 ILSNKSQPATLGSVWNRAGTWEEKSLN-KWASDRIKELLTSVG 48 (165)
Q Consensus 7 ~~~~~~~~~~~~S~WN~n~hWeEKd~t-~Wak~~l~elL~~~~ 48 (165)
..|+|.+...+|-+. .+.|||-+++ +=|++-+.|.|+|.+
T Consensus 17 fv~gnl~g~~~gv~f--h~swe~a~~~~~~ak~~i~eylkgt~ 57 (103)
T PHA02096 17 FVSGNLHGAFGGVMF--HDSWEEADVSLKNAKKSIEEYLKGTT 57 (103)
T ss_pred eecCcccccccceEE--eccHHHhhhHHHHHHHHHHHHhcccc
Confidence 457888888888776 5579998775 568899999999877
No 13
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=25.81 E-value=3.4e+02 Score=21.57 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=46.4
Q ss_pred eeEeEEEEEee--eCcEEEEEEEEEEEEEEEEEeecCCeeeEEEEEEcccccCCCCCceEEEEEEecCCCc-chHhHHHH
Q 031130 64 NCVGDAFLVTV--RNKKRVGYNYELTLKVRGEWNIREEKKMVKGHIDIPEFSFGELDDLQMQVRISEEKDL-SKEDKLQI 140 (165)
Q Consensus 64 ~v~GdA~v~~r--kgKki~~ydl~i~l~w~g~~~~~~~~~~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~-~~~~k~~l 140 (165)
.+.|++.+..+ .+.+..+|.+.+.+...++....+. .+.|++++..+ ++...-..-... .......+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~~--~l~~~~~l~~~--------~~~~~~S~ig~~~~~~l~~~l 188 (238)
T PF02886_consen 119 SLSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISNN--KLTGSLSLDKF--------DLSLVSSSIGPFDVSSLEFLL 188 (238)
T ss_dssp EEEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEETT--EEEEEEEEEEE--------EEEEEEECTSS--GHHHHHHH
T ss_pred EEEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeCC--EEEEEEecccE--------EEEEecCCcCccchHHHHHHH
Confidence 34555555443 4556778888888887776543333 68888888443 333332222221 22222333
Q ss_pred HHHh-hhcHHHHHHHHH
Q 031130 141 SQDL-KMFLQPVREKLL 156 (165)
Q Consensus 141 ~~~~-~~~~~~ir~~l~ 156 (165)
...+ ..+.|.|.+.|+
T Consensus 189 ~~~~~~~~~p~lN~~L~ 205 (238)
T PF02886_consen 189 NSILKEVLLPKLNKKLA 205 (238)
T ss_dssp HHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 3344 777888888775
No 14
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=25.38 E-value=35 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=23.7
Q ss_pred cceecCCCCeeecCCChhHHHHHHHHhccC
Q 031130 18 GSVWNRAGTWEEKSLNKWASDRIKELLTSV 47 (165)
Q Consensus 18 ~S~WN~n~hWeEKd~t~Wak~~l~elL~~~ 47 (165)
.+||||.+++...-...=+..+|...|...
T Consensus 1 ITA~NP~s~~~s~~eN~~~~~~L~~~L~~~ 30 (73)
T PF11697_consen 1 ITAWNPGSQRLSDEENRRRNRQLRAELQQL 30 (73)
T ss_pred CcccCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 368999998887777777788888888543
No 15
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=23.37 E-value=1.3e+02 Score=20.03 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.3
Q ss_pred hhcHHHHHHHHHHHHHHHhh
Q 031130 145 KMFLQPVREKLLLFEQELKD 164 (165)
Q Consensus 145 ~~~~~~ir~~l~~f~~eL~~ 164 (165)
..+.-.||..|.+|++.|..
T Consensus 44 ~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 44 QEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 55667888999999998864
No 16
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.23 E-value=29 Score=25.77 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCeeeEEEEEEcccccCCCCCceEEEEE-EecCCCcchHhHHHHHHHhhhcHHHHHHHHHHHHHHHh
Q 031130 98 EEKKMVKGHIDIPEFSFGELDDLQMQVR-ISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELK 163 (165)
Q Consensus 98 ~~~~~~~G~i~ipe~s~~~~dd~ei~v~-~~~~~~~~~~~k~~l~~~~~~~~~~ir~~l~~f~~eL~ 163 (165)
.-+..++|.+++|.|+.-+.++.+|--. +....+ +|+ +.+.+.---|.+|.+|++.++.|.
T Consensus 17 ~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~rGn----lKe-~e~~lgiSYPTvR~rLd~ii~~lg 78 (113)
T PF09862_consen 17 SCGTEIEGEFELPWFARLSPEQLEFIKLFIKNRGN----LKE-MEKELGISYPTVRNRLDKIIEKLG 78 (113)
T ss_pred CCCCEEEeeeccchhhcCCHHHHHHHHHHHHhcCC----HHH-HHHHHCCCcHHHHHHHHHHHHHhC
Confidence 4456899999999999955566665222 222222 222 333335567999999999888763
No 17
>PRK10293 acyl-CoA esterase; Provisional
Probab=20.70 E-value=1.8e+02 Score=21.64 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=18.6
Q ss_pred eeEeEEEEEeeeCcEEEEEEEEEE
Q 031130 64 NCVGDAFLVTVRNKKRVGYNYELT 87 (165)
Q Consensus 64 ~v~GdA~v~~rkgKki~~ydl~i~ 87 (165)
.+..+|.+ .++|+.++.++.++.
T Consensus 97 ~l~a~a~v-v~~Gr~~~~~~~~v~ 119 (136)
T PRK10293 97 RVRGVCKP-LHLGSRHQVWQIEIF 119 (136)
T ss_pred eEEEEEEE-EecCCCEEEEEEEEE
Confidence 57788888 899999998886654
Done!