Your job contains 1 sequence.
>031131
MKILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII
NEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLPP
LPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADDEPMTELMG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031131
(165 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2170768 - symbol:AT5G62950 species:3702 "Arabi... 351 4.7e-32 1
TAIR|locus:504955773 - symbol:AT3G28956 species:3702 "Ara... 315 3.1e-28 1
UNIPROTKB|Q60482 - symbol:CRCP "DNA-directed RNA polymera... 135 3.6e-09 1
UNIPROTKB|A0JN61 - symbol:CRCP "DNA-directed RNA polymera... 134 4.7e-09 1
WB|WBGene00044924 - symbol:M106.7 species:6239 "Caenorhab... 131 9.7e-09 1
MGI|MGI:1100818 - symbol:Crcp "calcitonin gene-related pe... 129 1.6e-08 1
RGD|620753 - symbol:Crcp "CGRP receptor component" specie... 129 1.6e-08 1
UNIPROTKB|Q8VHM6 - symbol:Crcp "DNA-directed RNA polymera... 129 1.6e-08 1
UNIPROTKB|O75575 - symbol:CRCP "DNA-directed RNA polymera... 128 2.0e-08 1
UNIPROTKB|F1PM57 - symbol:CRCP "Uncharacterized protein" ... 126 3.3e-08 1
ZFIN|ZDB-GENE-060825-150 - symbol:crcp "calcitonin gene-r... 117 2.9e-07 1
SGD|S000003548 - symbol:RPC17 "RNA polymerase III subunit... 102 3.4e-07 2
UNIPROTKB|C9J2T4 - symbol:CRCP "DNA-directed RNA polymera... 113 7.8e-07 1
POMBASE|SPAPB1E7.10 - symbol:rpc17 "DNA-directed RNA poly... 112 1.0e-06 1
UNIPROTKB|F1P0Q2 - symbol:CRCP "Uncharacterized protein" ... 110 1.6e-06 1
UNIPROTKB|H7C0S8 - symbol:H7C0S8 "Uncharacterized protein... 113 3.3e-06 1
DICTYBASE|DDB_G0286521 - symbol:rpc9 "RNA polymerase III ... 107 3.4e-06 1
CGD|CAL0003169 - symbol:orf19.3990 species:5476 "Candida ... 90 0.00047 2
>TAIR|locus:2170768 [details] [associations]
symbol:AT5G62950 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
EMBL:CP002688 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 InterPro:IPR006590 SMART:SM00657 EMBL:BT009706
EMBL:AK227468 IPI:IPI00521441 RefSeq:NP_001190602.1
RefSeq:NP_201100.1 UniGene:At.29025 ProteinModelPortal:Q7XJ61
SMR:Q7XJ61 IntAct:Q7XJ61 PRIDE:Q7XJ61 EnsemblPlants:AT5G62950.1
EnsemblPlants:AT5G62950.3 GeneID:836415 KEGG:ath:AT5G62950
TAIR:At5g62950 eggNOG:KOG4168 InParanoid:Q7XJ61 OMA:ADAYAMI
PhylomeDB:Q7XJ61 ProtClustDB:CLSN2687378 Genevestigator:Q7XJ61
Uniprot:Q7XJ61
Length = 139
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 74/140 (52%), Positives = 92/140 (65%)
Query: 1 MKILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII 60
MKI++ANAG LTNFEV DFL +GASKD TRV+ P+ SE+KVYDYLVE+AA QTR I
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60
Query: 61 NEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXXXXXXPP 120
N+F +K K FKLAKAEILNIIN+RPSS+VE+ IIE D R PP
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR--EIDTDGILELVKDLLPP 118
Query: 121 LPNQPNAAEEVNEDVQGATE 140
LP + ++ E+ + +
Sbjct: 119 LPTTASPKDDDEEETENGEQ 138
>TAIR|locus:504955773 [details] [associations]
symbol:AT3G28956 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
EMBL:CP002686 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 InterPro:IPR006590 SMART:SM00657 IPI:IPI00520127
RefSeq:NP_683602.1 UniGene:At.48717 ProteinModelPortal:F4J1Q7
SMR:F4J1Q7 EnsemblPlants:AT3G28956.1 GeneID:822534
KEGG:ath:AT3G28956 OMA:TTETHED Uniprot:F4J1Q7
Length = 137
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 70/136 (51%), Positives = 85/136 (62%)
Query: 4 LEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEF 63
++ANAG LTNFE+ DFL +GASKD TRV+ P+ SE+KVYDYLVE+AA QTR +N+
Sbjct: 1 MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60
Query: 64 LEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXXXXXXPPLPN 123
+K K FKLAKAEILNIIN+ PSS+VE+ IIE D R PPLP
Sbjct: 61 ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDR--EIDTDGILELVKDLLPPLPT 118
Query: 124 --QPNAAEEVNEDVQG 137
P +E E G
Sbjct: 119 AESPKDNDEEEETENG 134
>UNIPROTKB|Q60482 [details] [associations]
symbol:CRCP "DNA-directed RNA polymerase III subunit RPC9"
species:10141 "Cavia porcellus" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISS] [GO:0006383 "transcription from
RNA polymerase III promoter" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0005886 GO:GO:0005634
GO:GO:0000166 GO:GO:0007218 GO:GO:0001669 GO:GO:0006383
SUPFAM:SSF47819 GO:GO:0001635 GO:GO:0003899 GO:GO:0009360
InterPro:IPR006590 SMART:SM00657 CTD:27297 eggNOG:NOG252343
HOVERGEN:HBG023697 EMBL:U50188 RefSeq:NP_001166404.1
ProteinModelPortal:Q60482 STRING:Q60482 GeneID:100135504
InParanoid:Q60482 Uniprot:Q60482
Length = 146
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 43/152 (28%), Positives = 71/152 (46%)
Query: 1 MKILEANAGPLTNFEVFDFLR-CKGASKDPTRVLVPVTPSEFKV--YD---YLVESAACN 54
M++ +AN+ L+N+EVF L K ++ ++ Y+ YL ++ +
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTPCRH 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXX 114
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + RF
Sbjct: 61 QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEEEQIEALLHT 120
Query: 115 XXXXPPLPNQPNAAEEVNEDVQGATERMDGEG 146
LP +P EV + +TE M+ EG
Sbjct: 121 VTHI--LPAEP----EVEQ--MASTEAMEEEG 144
>UNIPROTKB|A0JN61 [details] [associations]
symbol:CRCP "DNA-directed RNA polymerase III subunit RPC9"
species:9913 "Bos taurus" [GO:0009360 "DNA polymerase III complex"
evidence=ISS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007218 "neuropeptide
signaling pathway" evidence=IEA] [GO:0001669 "acrosomal vesicle"
evidence=IEA] [GO:0001635 "calcitonin gene-related polypeptide
receptor activity" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0007218 GO:GO:0001669
GO:GO:0045087 GO:GO:0051607 GO:GO:0006383 SUPFAM:SSF47819
GO:GO:0001635 GO:GO:0003899 GO:GO:0009360 InterPro:IPR006590
SMART:SM00657 EMBL:BC126530 IPI:IPI00709484 RefSeq:NP_001071338.1
UniGene:Bt.52556 ProteinModelPortal:A0JN61 STRING:A0JN61
PRIDE:A0JN61 Ensembl:ENSBTAT00000053944 GeneID:507533
KEGG:bta:507533 CTD:27297 eggNOG:NOG252343
GeneTree:ENSGT00390000014189 HOGENOM:HOG000244081
HOVERGEN:HBG023697 InParanoid:A0JN61 OMA:KHSAGQQ OrthoDB:EOG4S1T8M
NextBio:20868108 ArrayExpress:A0JN61 Uniprot:A0JN61
Length = 148
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 39/143 (27%), Positives = 68/143 (47%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDP-TRVLVPVTPSEFKVYDYLVESAACN 54
M++ +ANA L+N+EVF L + K + K+ + + ++ Y+ ++ +
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRF---QXXXXXXXX 111
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R Q
Sbjct: 61 QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 112 XXXXXXXPPLPNQPNAAEEVNED 134
P Q NA+++V D
Sbjct: 121 TSILPAGPEAEQQQNASDDVAMD 143
>WB|WBGene00044924 [details] [associations]
symbol:M106.7 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166
GO:GO:0006351 SUPFAM:SSF47819 EMBL:Z46935 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 eggNOG:NOG252343
GeneTree:ENSGT00390000014189 HOGENOM:HOG000244081 OMA:KHSAGQQ
RefSeq:NP_001076632.1 UniGene:Cel.35694 ProteinModelPortal:Q0G841
PaxDb:Q0G841 EnsemblMetazoa:M106.7 GeneID:4926972
KEGG:cel:CELE_M106.7 UCSC:M106.7 CTD:4926972 WormBase:M106.7
InParanoid:Q0G841 NextBio:960171 Uniprot:Q0G841
Length = 128
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 34/105 (32%), Positives = 51/105 (48%)
Query: 1 MKILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYD---YLVESAACNQTR 57
M++L+ LTN EV FL +D + +Y+ YL S A Q
Sbjct: 1 MEVLKTRETMLTNQEVLSFLNALKKEEDNKQQHERCKQLSTVIYETKKYLNTSPAVTQNE 60
Query: 58 NIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRF 102
+I E + K FKL AE L +IN+RPS+ ++ +IE+ + RF
Sbjct: 61 AVICELIPKLAPFKLTGAETLQVINLRPSTTADIQLLIEETEERF 105
>MGI|MGI:1100818 [details] [associations]
symbol:Crcp "calcitonin gene-related peptide-receptor
component protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001635 "calcitonin
gene-related polypeptide receptor activity" evidence=IDA]
[GO:0001669 "acrosomal vesicle" evidence=IDA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0007218 "neuropeptide signaling pathway" evidence=IDA]
[GO:0009360 "DNA polymerase III complex" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 MGI:MGI:1100818
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0007218
GO:GO:0001669 GO:GO:0006954 GO:GO:0045087 GO:GO:0051607
GO:GO:0006383 SUPFAM:SSF47819 GO:GO:0001635 GO:GO:0003899
GO:GO:0009360 InterPro:IPR006590 SMART:SM00657 CTD:27297
eggNOG:NOG252343 GeneTree:ENSGT00390000014189 HOGENOM:HOG000244081
HOVERGEN:HBG023697 OMA:KHSAGQQ OrthoDB:EOG4S1T8M EMBL:AF028242
EMBL:AF118271 EMBL:BC012676 IPI:IPI00130708 RefSeq:NP_031787.1
UniGene:Mm.18072 ProteinModelPortal:O35427 SMR:O35427 STRING:O35427
PhosphoSite:O35427 PRIDE:O35427 DNASU:12909
Ensembl:ENSMUST00000026608 GeneID:12909 KEGG:mmu:12909
UCSC:uc008zua.1 InParanoid:O35427 NextBio:282536 Bgee:O35427
Genevestigator:O35427 GermOnline:ENSMUSG00000025532 Uniprot:O35427
Length = 148
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/139 (25%), Positives = 62/139 (44%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDPTRV-LVPVTPSEFKVYDYLVESAACN 54
M++ +ANA L+N+EVF L + K + K+ + ++ Y+ ++ N
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXX 114
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 115 XXXXPPLPNQPNAAEEVNE 133
P P + N+
Sbjct: 121 TSILPAGPEDEQSKSTSND 139
>RGD|620753 [details] [associations]
symbol:Crcp "CGRP receptor component" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001635 "calcitonin gene-related polypeptide receptor activity"
evidence=IEA;ISO] [GO:0001669 "acrosomal vesicle" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0006383
"transcription from RNA polymerase III promoter"
evidence=IEA;ISO;ISS] [GO:0006950 "response to stress"
evidence=IEP] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0007218 "neuropeptide signaling pathway" evidence=IEA;ISO]
[GO:0009360 "DNA polymerase III complex" evidence=IEA;ISO;ISS]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 RGD:620753 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0007218 GO:GO:0001669
GO:GO:0006954 GO:GO:0045087 GO:GO:0051607 GO:GO:0006383
SUPFAM:SSF47819 GO:GO:0001635 GO:GO:0003899 GO:GO:0009360
InterPro:IPR006590 SMART:SM00657 CTD:27297 eggNOG:NOG252343
HOGENOM:HOG000244081 HOVERGEN:HBG023697 OrthoDB:EOG4S1T8M
EMBL:AF440799 EMBL:BC059117 EMBL:AF103950 IPI:IPI00207161
RefSeq:NP_446122.1 UniGene:Rn.9449 ProteinModelPortal:Q8VHM6
STRING:Q8VHM6 GeneID:114205 KEGG:rno:114205 InParanoid:Q8VHM6
NextBio:618383 Genevestigator:Q8VHM6 GermOnline:ENSRNOG00000000901
Uniprot:Q8VHM6
Length = 148
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/139 (25%), Positives = 62/139 (44%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDPTRV-LVPVTPSEFKVYDYLVESAACN 54
M++ +ANA L+N+EVF L + K + K+ + ++ Y+ ++ N
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXX 114
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 115 XXXXPPLPNQPNAAEEVNE 133
P P + N+
Sbjct: 121 TSILPAGPEDEQSKSTSND 139
>UNIPROTKB|Q8VHM6 [details] [associations]
symbol:Crcp "DNA-directed RNA polymerase III subunit RPC9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
RGD:620753 GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0007218
GO:GO:0001669 GO:GO:0006954 GO:GO:0045087 GO:GO:0051607
GO:GO:0006383 SUPFAM:SSF47819 GO:GO:0001635 GO:GO:0003899
GO:GO:0009360 InterPro:IPR006590 SMART:SM00657 CTD:27297
eggNOG:NOG252343 HOGENOM:HOG000244081 HOVERGEN:HBG023697
OrthoDB:EOG4S1T8M EMBL:AF440799 EMBL:BC059117 EMBL:AF103950
IPI:IPI00207161 RefSeq:NP_446122.1 UniGene:Rn.9449
ProteinModelPortal:Q8VHM6 STRING:Q8VHM6 GeneID:114205
KEGG:rno:114205 InParanoid:Q8VHM6 NextBio:618383
Genevestigator:Q8VHM6 GermOnline:ENSRNOG00000000901 Uniprot:Q8VHM6
Length = 148
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/139 (25%), Positives = 62/139 (44%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDPTRV-LVPVTPSEFKVYDYLVESAACN 54
M++ +ANA L+N+EVF L + K + K+ + ++ Y+ ++ N
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXX 114
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 115 XXXXPPLPNQPNAAEEVNE 133
P P + N+
Sbjct: 121 TSILPAGPEDEQSKSTSND 139
>UNIPROTKB|O75575 [details] [associations]
symbol:CRCP "DNA-directed RNA polymerase III subunit RPC9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0001635
"calcitonin gene-related polypeptide receptor activity"
evidence=IEA] [GO:0001669 "acrosomal vesicle" evidence=IEA]
[GO:0007218 "neuropeptide signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0004948 "calcitonin receptor activity"
evidence=NAS] [GO:0007340 "acrosome reaction" evidence=NAS]
[GO:0009360 "DNA polymerase III complex" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 EMBL:AF073792
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0007218
GO:GO:0001669 GO:GO:0006954 GO:GO:0045087 GO:GO:0051607
GO:GO:0007340 GO:GO:0006383 EMBL:CH471140 SUPFAM:SSF47819
GO:GO:0004948 GO:GO:0001635 GO:GO:0003899 GO:GO:0009360
InterPro:IPR006590 SMART:SM00657 CTD:27297 eggNOG:NOG252343
HOGENOM:HOG000244081 HOVERGEN:HBG023697 OMA:KHSAGQQ EMBL:U51134
EMBL:AK290553 EMBL:AK303737 EMBL:AK311829 EMBL:BX647867
EMBL:AC068533 EMBL:BC040107 EMBL:BC105808 IPI:IPI00004477
IPI:IPI00335708 IPI:IPI00927312 RefSeq:NP_001035737.1
RefSeq:NP_001135886.1 RefSeq:NP_055293.1 UniGene:Hs.300684
ProteinModelPortal:O75575 SMR:O75575 IntAct:O75575 STRING:O75575
PhosphoSite:O75575 PaxDb:O75575 PeptideAtlas:O75575 PRIDE:O75575
DNASU:27297 Ensembl:ENST00000338592 Ensembl:ENST00000395326
Ensembl:ENST00000431089 GeneID:27297 KEGG:hsa:27297 UCSC:uc003tus.3
UCSC:uc003tut.3 GeneCards:GC07P065578 HGNC:HGNC:17888 HPA:HPA007216
MIM:606121 neXtProt:NX_O75575 PharmGKB:PA164718123 PhylomeDB:O75575
GenomeRNAi:27297 NextBio:50270 ArrayExpress:O75575 Bgee:O75575
Genevestigator:O75575 GermOnline:ENSG00000126522 Uniprot:O75575
Length = 148
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDP-TRVLVPVTPSEFKVYDYLVESAACN 54
M++ +AN+ L+N+EVF L + K + K+ + + ++ Y+ ++ +
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQXXXXXXXXXXX 114
Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 115 XXXXPPLPNQPNAAEEVNEDVQGATERMD 143
LP +P A ++ N + A + D
Sbjct: 121 TSI---LPAEPEAEQKKNTNSNVAMDEED 146
>UNIPROTKB|F1PM57 [details] [associations]
symbol:CRCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166
GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590
SMART:SM00657 CTD:27297 GeneTree:ENSGT00390000014189 OMA:KHSAGQQ
EMBL:AAEX03004187 RefSeq:XP_536833.2 Ensembl:ENSCAFT00000017109
GeneID:479705 KEGG:cfa:479705 Uniprot:F1PM57
Length = 147
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/107 (29%), Positives = 58/107 (54%)
Query: 1 MKILEANAGPLTNFEVFDFL-----RCKGASKDP-TRVLVPVTPSEFKVYDYLVESAACN 54
M++ +AN+ L+N+EVF L + K + K+ + + ++ Y+ ++ +
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTR 101
QT I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QTPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEER 107
>ZFIN|ZDB-GENE-060825-150 [details] [associations]
symbol:crcp "calcitonin gene-related
peptide-receptor component protein" species:7955 "Danio rerio"
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
ZFIN:ZDB-GENE-060825-150 GO:GO:0000166 GO:GO:0006351
SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590 SMART:SM00657
CTD:27297 eggNOG:NOG252343 HOGENOM:HOG000244081 HOVERGEN:HBG023697
OrthoDB:EOG4S1T8M EMBL:BC122405 IPI:IPI00786653
RefSeq:NP_001038838.1 UniGene:Dr.85498 ProteinModelPortal:Q0P3W9
STRING:Q0P3W9 PRIDE:Q0P3W9 GeneID:751656 KEGG:dre:751656
InParanoid:Q0P3W9 NextBio:20917807 ArrayExpress:Q0P3W9 Bgee:Q0P3W9
Uniprot:Q0P3W9
Length = 144
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 1 MKILEANAGPLTNFEVFDFLR-CKGASKDPTRVLVPVTPSEFK--VYD---YLVESAACN 54
MK+ +ANA L+N+EV+ L K K+ + +Y+ YL ++ +
Sbjct: 1 MKVRDANAAMLSNYEVYQLLTDLKEKRKEMVKNKHSTGQQNLNTIMYETLKYLSKTPCVH 60
Query: 55 QTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTR 101
Q + EFL KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 61 QKPETVKEFLTAMLPHKLTKAEKLQLLNHRPQTAVEIQLMVEESEER 107
>SGD|S000003548 [details] [associations]
symbol:RPC17 "RNA polymerase III subunit C17" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=IPI] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
SGD:S000003548 EMBL:BK006943 GO:GO:0000166 SUPFAM:SSF47819
GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
Reactome:REACT_87991 GO:GO:0042797 GO:GO:0006384 PDB:2CKZ
PDBsum:2CKZ OrthoDB:EOG42593F EMBL:Z49286 EMBL:AY558346 PIR:S56782
RefSeq:NP_012523.2 ProteinModelPortal:P47076 SMR:P47076
DIP:DIP-6745N IntAct:P47076 MINT:MINT-648909 STRING:P47076
PaxDb:P47076 PeptideAtlas:P47076 EnsemblFungi:YJL011C GeneID:853442
KEGG:sce:YJL011C CYGD:YJL011c eggNOG:NOG288088 HOGENOM:HOG000094251
OMA:YSIVEEC EvolutionaryTrace:P47076 NextBio:973994
Genevestigator:P47076 GermOnline:YJL011C Uniprot:P47076
Length = 161
Score = 102 (41.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 62 EFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRF 102
E + K FKL KAE L I+N P+++V + SI+E+CD RF
Sbjct: 105 ELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARF 145
Score = 42 (19.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 1 MKILEANAGPLTNFEVFDFL 20
MK+LE L+++EV FL
Sbjct: 1 MKVLEERNAFLSDYEVLKFL 20
>UNIPROTKB|C9J2T4 [details] [associations]
symbol:CRCP "DNA-directed RNA polymerase III subunit RPC9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 HOGENOM:HOG000244081 EMBL:AC068533
IPI:IPI00927312 HGNC:HGNC:17888 ProteinModelPortal:C9J2T4
SMR:C9J2T4 STRING:C9J2T4 Ensembl:ENST00000415001
ArrayExpress:C9J2T4 Bgee:C9J2T4 Uniprot:C9J2T4
Length = 115
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 39 SEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQC 98
S ++ Y+ ++ +Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+
Sbjct: 12 SNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEES 71
Query: 99 DTRFQXXXXXXXXXXXXXXXPPLPNQPNAAEEVNEDVQGATERMD 143
+ R LP +P A ++ N + A + D
Sbjct: 72 EERLTEEQIEALLHTVTSI---LPAEPEAEQKKNTNSNVAMDEED 113
>POMBASE|SPAPB1E7.10 [details] [associations]
symbol:rpc17 "DNA-directed RNA polymerase III complex
subunit Rpc17" species:4896 "Schizosaccharomyces pombe" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI] [GO:0005634
"nucleus" evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IGI] InterPro:IPR005574 InterPro:IPR010997
Pfam:PF03874 PomBase:SPAPB1E7.10 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 SUPFAM:SSF47819
GO:GO:0005666 GO:GO:0003899 GO:GO:0006384 PDB:3AYH PDBsum:3AYH
EMBL:DQ156220 RefSeq:NP_594136.1 ProteinModelPortal:Q9C0Z9
STRING:Q9C0Z9 EnsemblFungi:SPAPB1E7.10.1 GeneID:2543653
KEGG:spo:SPAPB1E7.10 eggNOG:NOG313802 OMA:KEMENEQ OrthoDB:EOG42593F
NextBio:20804659 Uniprot:Q9C0Z9
Length = 129
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/113 (31%), Positives = 57/113 (50%)
Query: 1 MKILEANAGPLTNFEVFDFLR-------CKGASKDPTRVLV--PVTPSEFKVYDYLVESA 51
MK+LEA LTN EVF L+ + + + LV + +F++ YL
Sbjct: 1 MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQG 60
Query: 52 ACNQ-TRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQ 103
C T+ + + +F+L KAEIL I+N +PSS+ E+ + IE + RF+
Sbjct: 61 NCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFK 113
>UNIPROTKB|F1P0Q2 [details] [associations]
symbol:CRCP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 GO:GO:0006351
SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000014189 EMBL:AADN02025923 IPI:IPI00600257
Ensembl:ENSGALT00000035020 ArrayExpress:F1P0Q2 Uniprot:F1P0Q2
Length = 142
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 5 EANAGPLTNFEVFDFLR-CKGASKDPTRVLVPVTPSEFK--VYDYL--VESAACN-QTRN 58
+ANA L+NFEVF L K K+ + +Y+ L + C Q+
Sbjct: 2 DANAALLSNFEVFQLLTDLKQQRKESGKSKQSSGQQNLNTIMYETLKYISKTPCRYQSPE 61
Query: 59 IINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTR 101
+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 62 TVREFLIAMKGHKLTKAEKLQLLNHRPVTAVEIQLMVEESEER 104
>UNIPROTKB|H7C0S8 [details] [associations]
symbol:H7C0S8 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004056
"argininosuccinate lyase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0042450 "arginine
biosynthetic process via ornithine" evidence=IEA]
InterPro:IPR005574 InterPro:IPR008948 InterPro:IPR009049
InterPro:IPR010997 InterPro:IPR020557 Pfam:PF03874 PROSITE:PS00163
GO:GO:0000166 GO:GO:0006351 GO:GO:0042450 InterPro:IPR003031
InterPro:IPR000362 InterPro:IPR022761 PANTHER:PTHR11444:SF3
Pfam:PF00206 PRINTS:PR00145 PRINTS:PR00149 SUPFAM:SSF48557
GO:GO:0004056 SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590
SMART:SM00657 EMBL:AC068533 ProteinModelPortal:H7C0S8
Ensembl:ENST00000450043 OMA:VHESACA Uniprot:H7C0S8
Length = 293
Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 30/103 (29%), Positives = 55/103 (53%)
Query: 5 EANAGPLTNFEVFDFL-----RCKGASKDP-TRVLVPVTPSEFKVYDYLVESAACNQTRN 58
+AN+ L+N+EVF L + K + K+ + + ++ Y+ ++ +Q+
Sbjct: 188 DANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPE 247
Query: 59 IINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTR 101
I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R
Sbjct: 248 IVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEER 290
>DICTYBASE|DDB_G0286521 [details] [associations]
symbol:rpc9 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0006384 "transcription initiation from
RNA polymerase III promoter" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR005574 InterPro:IPR010997
Pfam:PF03874 dictyBase:DDB_G0286521 GenomeReviews:CM000153_GR
GO:GO:0000166 EMBL:AAFI02000087 SUPFAM:SSF47819 GO:GO:0005666
GO:GO:0003899 GO:GO:0009360 GO:GO:0006384 RefSeq:XP_637690.1
ProteinModelPortal:Q54LP2 EnsemblProtists:DDB0304989 GeneID:8625656
KEGG:ddi:DDB_G0286521 eggNOG:euNOG17156 OMA:NIAPSSE
ProtClustDB:CLSZ2497155 Uniprot:Q54LP2
Length = 130
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 38/110 (34%), Positives = 56/110 (50%)
Query: 1 MKILEANAGPL-TNFEVFDFLRCKGASKDPTRVLVPVTPSEF--KVYDYLVESAACNQTR 57
MKI++ + + TNFEV L+ K ++ +VL+ +EF V YL + A QT
Sbjct: 1 MKIIKKDKEEIITNFEVLQLLKHKRRIEE--QVLL----NEFVNNVIRYLETTPASKQTI 54
Query: 58 NIINEFLEKSKKF------KLAKAEILNIINIRPSSLVEVDSIIEQCDTR 101
+ E + K K+ E+L I+NI PSS VEV +IE C+ R
Sbjct: 55 ESVKECKKSVTKLADTSGCKILTGEMLQILNIAPSSEVEVHLVIEDCEDR 104
>CGD|CAL0003169 [details] [associations]
symbol:orf19.3990 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 CGD:CAL0003169
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 EMBL:AACQ01000012
GO:GO:0003899 EMBL:AACQ01000011 eggNOG:NOG313802 RefSeq:XP_721898.1
RefSeq:XP_722059.1 ProteinModelPortal:Q5AK30 STRING:Q5AK30
GeneID:3636355 GeneID:3636538 KEGG:cal:CaO19.11473
KEGG:cal:CaO19.3990 Uniprot:Q5AK30
Length = 163
Score = 90 (36.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 49 ESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRF 102
ES+ T++ + +E +F+L K E L I+N P SLV + +++E+C+ RF
Sbjct: 70 ESSLIQSTKSF-KQLMEFLNQFELMKVEKLQIVNSLPRSLVVLYALVEECEDRF 122
Score = 36 (17.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1 MKILEANAGPLTNFEVFDFLR 21
MK+L L+N+EV L+
Sbjct: 1 MKVLTERDSFLSNYEVLQHLQ 21
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 165 150 0.00087 104 3 11 23 0.39 32
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 524 (56 KB)
Total size of DFA: 122 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.60u 0.11s 13.71t Elapsed: 00:00:00
Total cpu time: 13.60u 0.11s 13.71t Elapsed: 00:00:00
Start: Fri May 10 12:32:40 2013 End: Fri May 10 12:32:40 2013