BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031131
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP
PE=2 SV=1
Length = 148
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 1 MKILEANAGPLTNFEVFDFL-------RCKGASKDPT--RVLVPVTPSEFKVYDYLVESA 51
M++ +ANA L+N+EVF L + G +K + + L +T ++ Y+ ++
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTIT---YETLKYISKTP 57
Query: 52 ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELV 111
+Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R EE+++ L+
Sbjct: 58 CKHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALL 117
Query: 112 DLVIEVLPPLP---NQPNAAEEVNED 134
V +LP P Q NA+++V D
Sbjct: 118 HTVTSILPAGPEAEQQQNASDDVAMD 143
>sp|Q8VHM6|RPC9_RAT DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus
GN=Crcp PE=2 SV=1
Length = 148
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 1 MKILEANAGPLTNFEVFDFL-------RCKGASKDPT--RVLVPVTPSEFKVYDYLVESA 51
M++ +ANA L+N+EVF L + G +K + L +T ++ Y+ ++
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAIT---YETLKYISKTP 57
Query: 52 ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELV 111
NQ+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R EE+++ L+
Sbjct: 58 CKNQSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALL 117
Query: 112 DLVIEVLPPLP 122
V +LP P
Sbjct: 118 HTVTSILPAGP 128
>sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus
GN=Crcp PE=2 SV=1
Length = 148
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 1 MKILEANAGPLTNFEVFDFL-------RCKGASKDPT--RVLVPVTPSEFKVYDYLVESA 51
M++ +ANA L+N+EVF L + G +K + L +T ++ Y+ ++
Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAIT---YETLKYISKTP 57
Query: 52 ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELV 111
NQ+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R EE+++ L+
Sbjct: 58 CRNQSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALL 117
Query: 112 DLVIEVLPPLP 122
V +LP P
Sbjct: 118 HTVTSILPAGP 128
>sp|O75575|RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens
GN=CRCP PE=1 SV=1
Length = 148
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 12/131 (9%)
Query: 1 MKILEANAGPLTNFEVFDFL-------RCKGASKDPT--RVLVPVTPSEFKVYDYLVESA 51
M++ +AN+ L+N+EVF L + G +K + + L +T ++ Y+ ++
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTIT---YETLKYISKTP 57
Query: 52 ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELV 111
+Q+ I+ EFL K KL KAE L ++N RP + VE+ ++E+ + R EE+++ L+
Sbjct: 58 CRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALL 117
Query: 112 DLVIEVLPPLP 122
V +LP P
Sbjct: 118 HTVTSILPAEP 128
>sp|Q60482|RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus
GN=CRCP PE=2 SV=1
Length = 146
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 22/156 (14%)
Query: 1 MKILEANAGPLTNFEVFDFL-------RCKGASKDPT--RVLVPVTPSEFKVYDYLVESA 51
M++ +AN+ L+N+EVF L R G K + L +T ++ YL ++
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKDQRRESGKMKHSAGQQNLNTIT---YETLKYLSKTP 57
Query: 52 ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSII-EQCDTRFQEEELQEL 110
+Q+ I+ EFL K KL KAE L ++N RP + VE+ ++ E + +EE+++ L
Sbjct: 58 CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEEEQIEAL 117
Query: 111 VDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEG 146
+ V +LP P EV + +TE M+ EG
Sbjct: 118 LHTVTHILPAEP-------EVEQ--MASTEAMEEEG 144
>sp|Q9C0Z9|RPC9_SCHPO DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc17 PE=1 SV=1
Length = 129
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 1 MKILEANAGPLTNFEVFDFLR-------CKGASKDPTRVLVP--VTPSEFKVYDYLVESA 51
MK+LEA LTN EVF L+ + + + LV + +F++ YL
Sbjct: 1 MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQG 60
Query: 52 AC-NQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQEL 110
C T+ + + +F+L KAEIL I+N +PSS+ E+ + IE + RF+EE++ +L
Sbjct: 61 NCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKL 120
Query: 111 VDLVIEVLP 119
V+ + P
Sbjct: 121 VEKINTTFP 129
>sp|P47076|RPC9_YEAST DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1
SV=2
Length = 161
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 62 EFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLV 114
E + K FKL KAE L I+N P+++V + SI+E+CD RF E+ ++E+++++
Sbjct: 105 ELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARFDEKTIEEMLEII 157
>sp|Q54LP2|RPC9_DICDI DNA-directed RNA polymerase III subunit rpc9 OS=Dictyostelium
discoideum GN=rpc9 PE=3 SV=1
Length = 130
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 1 MKILEANAGPL-TNFEVFDFLRCKGASKDPTRVLVPVTPSEF--KVYDYLVESAACNQTR 57
MKI++ + + TNFEV L K R+ V +EF V YL + A QT
Sbjct: 1 MKIIKKDKEEIITNFEVLQLL------KHKRRIEEQVLLNEFVNNVIRYLETTPASKQTI 54
Query: 58 NIINEFLEKSKKF------KLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEEL 107
+ E + K K+ E+L I+NI PSS VEV +IE C+ R +E+
Sbjct: 55 ESVKECKKSVTKLADTSGCKILTGEMLQILNIAPSSEVEVHLVIEDCEDRIDAKEV 110
>sp|Q01055|V120_SHV21 Capsid assembly protein 63 OS=Saimiriine herpesvirus 2 (strain 11)
GN=63 PE=3 SV=1
Length = 899
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 33 LVPVTPSEFKVYDYLVESA----ACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSS- 87
L TP F +YD+++E+ + N +NII +F+ K+ +F ++ N I I+ S+
Sbjct: 262 LTDATPELFFLYDFIIEALYHEHSYNVPQNIIEQFISKNTQF---MTDLCNTIQIKCSNK 318
Query: 88 ------------LVEVDSIIEQCDTRFQEEEL 107
L+E + E+C R Q L
Sbjct: 319 SLTSSEIRHIKELLESCGLTEECCHRLQTSVL 350
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 46 YLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIR-------PSSLVEVDSIIEQC 98
+L + ++C R +I E++ + + N R PS VEV S
Sbjct: 377 WLAQDSSCPTCRYVIPSPQEEASRTDSGNGNTMFRFNGRTFGFFTLPSFTVEVGSSFGNI 436
Query: 99 DTRFQE---EELQELVDLVIEVLPPLP--------NQPNAAEEVNEDVQGATERMDGEGI 147
R E E+LQ +++ V+E+ P + Q +A+ E++ ++ I
Sbjct: 437 FGRAAEPTQEQLQSMLETVLEMFPQMSPETILADLRQSGSAQSTIENILEGRMGLNASLI 496
Query: 148 KGVNDEKADDEPMTEL 163
GV DE D+ EL
Sbjct: 497 PGVLDEDLSDDTDNEL 512
>sp|Q87L45|EFG1_VIBPA Elongation factor G 1 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=fusA1 PE=3 SV=1
Length = 699
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 45 DYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQE 104
++++ESAA + +++++LE+ + L +AEI + R + + ++ C + F+
Sbjct: 220 NHMIESAA-EASEELMDKYLEEGE---LTEAEIKQALRTRT---LNNEIVLATCGSAFKN 272
Query: 105 EELQELVDLVIEVLPPLPNQP 125
+ +Q ++D VIE LP + P
Sbjct: 273 KGVQAVLDAVIEFLPSPSDVP 293
>sp|B8G6S9|EFG_CHLAD Elongation factor G OS=Chloroflexus aggregans (strain MD-66 / DSM
9485) GN=fusA PE=3 SV=1
Length = 702
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 98 CDTRFQEEELQELVDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADD 157
C + + +Q+L+D V+E LP ++P + V G EG++ + +DD
Sbjct: 262 CGAALRNKGVQKLLDAVVEYLPSPLDRPAITGTLPGQVMG------DEGVEVITRRVSDD 315
Query: 158 EPMTELM 164
EP T L+
Sbjct: 316 EPFTALV 322
>sp|Q3SLQ2|EFG_THIDA Elongation factor G OS=Thiobacillus denitrificans (strain ATCC
25259) GN=fusA PE=3 SV=1
Length = 696
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 51 AACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQEL 110
AA + ++N++LE+ L +A+I+ + R + + + C T F+ + +Q +
Sbjct: 225 AAAESSEELMNKYLEEGD---LPEADIIAALRAR---TIASEIVPMMCGTAFKNKGVQAM 278
Query: 111 VDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADDEPMTELM 164
+D VIE++P + P E+ G + D E + + A D + +L+
Sbjct: 279 LDKVIELMPAPTDIPPVKGELENGEAGERQATDEEKFSALAFKVATDPYVGQLI 332
>sp|Q2L2H1|EFG1_BORA1 Elongation factor G 1 OS=Bordetella avium (strain 197N) GN=fusA1
PE=3 SV=1
Length = 700
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 47 LVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEE 106
LVE+AA + ++N++LE L +AEI I R + E+ ++ C T F+ +
Sbjct: 222 LVEAAA-ESSEELMNKYLETGT---LEEAEINAAIRQR-TIAGEIHPML--CGTAFKNKG 274
Query: 107 LQELVDLVIEVLP 119
+Q ++D VIE LP
Sbjct: 275 VQRMLDAVIEYLP 287
>sp|B2FQ42|EFG_STRMK Elongation factor G OS=Stenotrophomonas maltophilia (strain K279a)
GN=fusA PE=3 SV=1
Length = 713
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 46 YLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEE 105
++VE+AA + ++ ++L + LA+AEI+N + R + + + C + F+ +
Sbjct: 221 FMVETAA-EASEELMEKYLGGEE---LAEAEIINALRTR---TLATEIVPMYCGSAFKNK 273
Query: 106 ELQELVDLVIEVLP 119
+Q ++D VI++LP
Sbjct: 274 GVQAMLDGVIQLLP 287
>sp|Q47JA6|EFG_DECAR Elongation factor G OS=Dechloromonas aromatica (strain RCB) GN=fusA
PE=3 SV=1
Length = 697
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 8/62 (12%)
Query: 59 IINEFLEKSKKFKLAKAEILNIINIRPSSLV-EVDSIIEQCDTRFQEEELQELVDLVIEV 117
++N++LE+ L++A+I I+ +R ++ E+ ++ C T F+ + +Q+++D VIE+
Sbjct: 233 LMNKYLEEGD---LSEADI--ILGLRTRTIACEIQPML--CGTAFKNKGVQKMLDAVIEL 285
Query: 118 LP 119
LP
Sbjct: 286 LP 287
>sp|A8WN14|UFL1_CAEBR E3 UFM1-protein ligase 1 homolog OS=Caenorhabditis briggsae
GN=CBG00415 PE=3 SV=3
Length = 730
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 42 KVYDYLVESAACNQTRNIINEFLEKSK------KFKLAKAEILNIINIRPSSLVEVDSI- 94
K+YDYLV++ NQ R NEFL+ S K A E+L ++ LV ++SI
Sbjct: 238 KMYDYLVKTCVTNQYRQ--NEFLQMSTLKTLGLDSKTALEEVLGASEVKK--LVNLNSIY 293
Query: 95 -----IEQCDTRFQEE 105
+EQC Q++
Sbjct: 294 MSKELMEQCVQTVQDD 309
>sp|Q9D7M8|RPB4_MOUSE DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus
GN=Polr2d PE=2 SV=2
Length = 142
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 71 KLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVD 112
KL K E+ + N+ P + E ++I + RF++EELQ+++D
Sbjct: 91 KLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
>sp|O15514|RPB4_HUMAN DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens
GN=POLR2D PE=1 SV=1
Length = 142
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 71 KLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVD 112
KL K E+ + N+ P + E ++I + RF++EELQ+++D
Sbjct: 91 KLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
>sp|Q5BKX6|S45A4_HUMAN Solute carrier family 45 member 4 OS=Homo sapiens GN=SLC45A4 PE=1
SV=2
Length = 768
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 125 PNAAEEVNEDVQGATERMDGEGIKGVNDEK 154
PN +EE E+ +G + + GEG G N EK
Sbjct: 717 PNVSEEAKEEQKGLSSPLAGEGRAGGNSEK 746
>sp|Q9PPA9|LPXK_CAMJE Tetraacyldisaccharide 4'-kinase OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=lpxK PE=3
SV=1
Length = 308
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 18 DFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAAC 53
DF+R ++P VLV F++Y++ +++ AC
Sbjct: 204 DFVRYSFVKENPKAVLVTAIAKPFRLYEHFIKARAC 239
>sp|A8FLM4|LPXK_CAMJ8 Tetraacyldisaccharide 4'-kinase OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=lpxK
PE=3 SV=1
Length = 308
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 18 DFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAAC 53
DF+R ++P VLV F++Y++ +++ AC
Sbjct: 204 DFVRYSFVKENPKAVLVTAIAKPFRLYEHFIKARAC 239
>sp|A1VZF9|LPXK_CAMJJ Tetraacyldisaccharide 4'-kinase OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=lpxK PE=3
SV=1
Length = 308
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 18 DFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAAC 53
DF+R ++P VLV F++Y++ +++ AC
Sbjct: 204 DFVRYSFVKENPKAVLVTAIAKPFRLYEHFIKARAC 239
>sp|Q8NHM5|KDM2B_HUMAN Lysine-specific demethylase 2B OS=Homo sapiens GN=KDM2B PE=1 SV=1
Length = 1336
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 100 TRFQEEELQELVDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADDEP 159
T E EL+ L LV E L LP E ED Q E G+K V E ADD+P
Sbjct: 507 THLTEFELKGLKALV-EKLESLPENKKCVPEGIEDPQALLE-----GVKNVLKEHADDDP 560
Query: 160 MTELMG 165
+ G
Sbjct: 561 SLAITG 566
>sp|A1WHC2|EFG_VEREI Elongation factor G OS=Verminephrobacter eiseniae (strain EF01-2)
GN=fusA PE=3 SV=1
Length = 700
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 59 IINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVL 118
++N++LE+ L++ EI + + R + E+ ++ C T F+ + +Q ++D VIE+L
Sbjct: 233 LMNKYLEEGD---LSEDEITSGLRAR-TVAGEIQPMM--CGTAFKNKGVQRMLDAVIELL 286
Query: 119 P-PLPNQPNAAEEVNEDVQGATERMD 143
P PL P +ED + T R D
Sbjct: 287 PSPLDVPPVPG--FDEDDKAVTRRAD 310
>sp|B4SKW0|EFG_STRM5 Elongation factor G OS=Stenotrophomonas maltophilia (strain R551-3)
GN=fusA PE=3 SV=1
Length = 713
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 72 LAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLPPLPNQPN 126
LA+AEI+N + R + + + C + F+ + +Q ++D VI++LP + P+
Sbjct: 243 LAEAEIINALRTR---TLATEIVPMYCGSAFKNKGVQAMLDGVIQLLPSPVDVPD 294
>sp|P47018|MTC1_YEAST Maintenance of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MTC1 PE=1
SV=1
Length = 478
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 114 VIEVLPPLPNQPNAAEEVNEDVQGATERMDG-----EGIKGVNDEKADDE 158
V E L LP N + VN DV+G+ E + G G G + +K DD+
Sbjct: 12 VFEFLDSLPEAKNGGKMVNTDVKGSQEGVKGGSNSVAGKTGNDGKKGDDD 61
>sp|A1KB30|EFG_AZOSB Elongation factor G OS=Azoarcus sp. (strain BH72) GN=fusA PE=3 SV=1
Length = 698
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 51 AACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLV-EVDSIIEQCDTRFQEEELQE 109
AA +++NE+LE L++ +I + +R ++ E+ ++ C T F+ + +Q
Sbjct: 225 AAAEANEDLMNEYLENGD---LSEEKIK--LGLRTRTIACEIQPML--CGTAFKNKGVQR 277
Query: 110 LVDLVIEVLP-PLPNQPNAAEEVNE 133
++D VIE LP P+ P A + NE
Sbjct: 278 MLDAVIEFLPSPVDIPPVAGVDDNE 302
>sp|A5GN10|RNPA_SYNPW Ribonuclease P protein component OS=Synechococcus sp. (strain
WH7803) GN=rnpA PE=3 SV=1
Length = 131
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 24/122 (19%)
Query: 11 LTNFEVFDFLRCKGASKDPTRVLVPVTPSEFK-----VYDYLVES--AAC---------- 53
L FD L +G T +++ PS K ++ L ++ +C
Sbjct: 9 LRGHRCFDHLHRRGKRYYGTWMVLRKAPSNAKLLRRDIHGLLTQTQPHSCRIAVVISGKV 68
Query: 54 -------NQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEE 106
N+ R ++++ L + + +++ +I++RP + + +++E+CD +E
Sbjct: 69 HKRAVVRNRLRRLLHDHLRLRFEARSTHSDVWLLISLRPGADADEANLLEECDRLLEEAG 128
Query: 107 LQ 108
LQ
Sbjct: 129 LQ 130
>sp|Q7NAV3|EFG_MYCGA Elongation factor G OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=fusA PE=3 SV=2
Length = 693
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 72 LAKAEILNII--NIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLP-PLPNQPNAA 128
++KAEI + I + S+L V C T F+ + ++ L+D V++ LP P+ P
Sbjct: 235 ISKAEIKSCIRKGVVSSTLFPV-----LCGTAFKNKGVKPLLDAVVDYLPSPIDVPPAKG 289
Query: 129 EEVNEDVQ 136
+V E+VQ
Sbjct: 290 YKVGEEVQ 297
>sp|Q98N59|EFG_RHILO Elongation factor G OS=Rhizobium loti (strain MAFF303099) GN=fusA
PE=3 SV=1
Length = 696
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 98 CDTRFQEEELQELVDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADD 157
C + F+ + +Q L+D V+E LP + P ++G + D E + DD
Sbjct: 264 CGSAFKNKGVQPLLDAVVEYLPSPADVPA--------IKGVDAKTDAE----IERHAVDD 311
Query: 158 EPMTEL 163
EP++ L
Sbjct: 312 EPLSML 317
>sp|Q31IY5|EFG_THICR Elongation factor G OS=Thiomicrospira crunogena (strain XCL-2)
GN=fusA PE=3 SV=1
Length = 700
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 47 LVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEE 106
+VESAA +++++LE+ L++ EI I R ++V+ + C + F+ +
Sbjct: 222 MVESAA-EANEELMDKYLEEGD---LSEEEIKAGIRQR---CIDVEIVPMFCGSAFKNKG 274
Query: 107 LQELVDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADDEPMTEL 163
+Q L+D VIE +P + P +QG E +G K DDEP L
Sbjct: 275 VQALLDAVIEYMPAPSDVPA--------IQGELE----DGTK-AERHSTDDEPFAAL 318
>sp|A1WVC5|EFG_HALHL Elongation factor G OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=fusA PE=3 SV=1
Length = 698
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 98 CDTRFQEEELQELVDLVIEVLPPLPNQPNAAEEVNEDVQGATERMDGEGIKGVNDEKADD 157
C + F+ + +Q L+D VIE LP PN+ A E + +D + R E DD
Sbjct: 266 CGSAFKNKGVQTLLDAVIEFLPA-PNEVPAIEGLLDDEETVVTR-----------ESTDD 313
Query: 158 EPMTEL 163
+P L
Sbjct: 314 QPFAAL 319
>sp|P42455|LEU1_CORGL 2-isopropylmalate synthase OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=leuA PE=3 SV=1
Length = 616
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 17 FDFLRC---KGASKDPTRVLVPVTPSEFKVYDYLVESA--ACNQTRNIINEF------LE 65
FDF+R KG D + V V E +L+ AC +N+I F L+
Sbjct: 117 FDFVREIIEKGMIPDDVTIQVLVQARE-----HLIRRTFEACEGAKNVIVHFYNSTSILQ 171
Query: 66 KSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQE----------EELQELVDLVI 115
++ F++ K ++ + + + + R+Q E +E+VD V+
Sbjct: 172 RNVVFRMDKVQVKKLATDAAELIKTIAQDYPDTNWRWQYSPESFTGTEVEYAKEVVDAVV 231
Query: 116 EVLPPLPNQP 125
EV+ P P P
Sbjct: 232 EVMDPTPENP 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,444,999
Number of Sequences: 539616
Number of extensions: 2390418
Number of successful extensions: 6289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 6256
Number of HSP's gapped (non-prelim): 89
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)