Query 031131
Match_columns 165
No_of_seqs 108 out of 244
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ayh_A DNA-directed RNA polyme 100.0 7.8E-41 2.7E-45 258.2 2.2 119 1-119 8-136 (136)
2 2ckz_A DNA-directed RNA polyme 100.0 1.4E-37 4.8E-42 246.6 0.7 117 1-117 1-160 (161)
3 2c35_A Human RPB4, DNA-directe 99.9 1E-22 3.5E-27 159.7 10.0 113 6-119 37-149 (152)
4 3h0g_D DNA-directed RNA polyme 99.8 2.9E-19 1E-23 137.8 10.9 108 7-119 21-132 (135)
5 1y14_A B32, RPB4, DNA-directed 99.6 6E-16 2.1E-20 125.0 9.7 84 35-119 102-185 (187)
6 1go3_F DNA-directed RNA polyme 99.5 1.7E-14 5.8E-19 107.1 5.8 99 7-117 8-106 (107)
7 4ayb_F DNA-directed RNA polyme 99.5 3E-15 1E-19 112.0 1.6 106 2-118 5-111 (113)
8 3hou_D DNA-directed RNA polyme 99.3 1.7E-11 5.8E-16 100.8 9.8 78 40-118 141-218 (221)
9 4h62_V Mediator of RNA polymer 80.3 0.98 3.3E-05 25.7 1.9 20 100-119 7-26 (31)
10 2lhi_A Calmodulin, serine/thre 70.7 26 0.00089 25.7 8.3 28 87-114 102-129 (176)
11 3i5g_B Myosin regulatory light 69.2 27 0.00093 25.0 8.0 26 87-112 103-128 (153)
12 3m66_A Mterf3, mterf domain-co 65.1 36 0.0012 27.0 8.6 64 56-119 72-141 (270)
13 2jns_A Bromodomain-containing 57.1 9.1 0.00031 26.5 3.2 38 82-120 14-51 (90)
14 4fp9_B Mterf domain-containing 56.6 22 0.00077 30.1 6.2 75 43-117 95-176 (335)
15 3u0k_A Rcamp; fluorescent prot 52.9 40 0.0014 30.0 7.4 27 87-113 393-419 (440)
16 4fp9_B Mterf domain-containing 51.9 37 0.0013 28.7 6.8 56 41-98 61-120 (335)
17 3mva_O Transcription terminati 46.9 63 0.0022 26.7 7.4 64 56-119 82-152 (343)
18 3dp5_A OMCF, cytochrome C fami 46.5 15 0.00053 24.7 3.0 19 101-119 81-99 (99)
19 1iwp_G Glycerol dehydratase ga 46.4 20 0.00067 27.4 3.7 29 54-82 81-109 (141)
20 1eex_G Propanediol dehydratase 44.1 21 0.00073 28.0 3.7 29 54-82 113-141 (173)
21 3fxd_A Protein ICMQ; helix bun 43.2 12 0.0004 24.5 1.8 26 99-124 2-27 (57)
22 2kvc_A Putative uncharacterize 42.9 77 0.0026 22.8 6.3 74 41-116 9-88 (103)
23 3mva_O Transcription terminati 42.8 38 0.0013 28.1 5.4 59 58-116 49-112 (343)
24 2jr2_A UPF0352 protein CPS_261 41.0 16 0.00053 25.2 2.2 19 100-118 5-23 (76)
25 4ds7_A Calmodulin, CAM; protei 40.0 67 0.0023 21.3 5.5 27 88-114 103-129 (147)
26 3qrx_A Centrin; calcium-bindin 39.1 52 0.0018 22.7 5.0 27 88-114 120-146 (169)
27 2juw_A UPF0352 protein SO_2176 38.8 18 0.0006 25.2 2.2 19 100-118 5-23 (80)
28 3m66_A Mterf3, mterf domain-co 38.5 1.3E+02 0.0043 23.7 7.7 60 55-114 106-172 (270)
29 2juz_A UPF0352 protein HI0840; 38.3 18 0.00063 25.1 2.3 19 100-118 5-23 (80)
30 2jrx_A UPF0352 protein YEJL; h 38.0 18 0.00062 25.2 2.2 19 100-118 5-23 (83)
31 2jpq_A UPF0352 protein VP2129; 37.9 18 0.00063 25.2 2.2 19 100-118 5-23 (83)
32 3tgn_A ADC operon repressor AD 33.8 76 0.0026 21.7 5.1 83 35-117 35-141 (146)
33 3i5g_C Myosin catalytic light 32.2 34 0.0012 24.7 3.1 27 87-113 103-129 (159)
34 3ixt_P Fusion glycoprotein F1; 30.5 34 0.0011 18.9 2.0 23 74-96 2-24 (26)
35 1wud_A ATP-dependent DNA helic 30.4 32 0.0011 23.3 2.5 46 72-118 38-83 (89)
36 3ol3_A Putative uncharacterize 30.3 1.2E+02 0.0041 21.9 5.6 72 41-114 14-95 (107)
37 2bl0_C Myosin regulatory light 29.5 1.2E+02 0.0042 20.0 8.4 27 88-114 98-124 (142)
38 3fwb_A Cell division control p 27.6 1.4E+02 0.0048 20.0 6.2 14 9-22 38-51 (161)
39 1gks_A Cytochrome C551; haloph 27.3 36 0.0012 21.5 2.2 19 100-118 60-78 (78)
40 2lky_A Uncharacterized protein 25.0 1.7E+02 0.0059 21.2 5.7 74 41-116 11-90 (112)
41 4hbl_A Transcriptional regulat 24.6 64 0.0022 22.5 3.3 83 35-117 38-139 (149)
42 1dtl_A Cardiac troponin C; hel 24.2 1.7E+02 0.0057 19.7 7.8 28 87-114 113-140 (161)
43 3cu4_A Cytochrome C family pro 23.9 64 0.0022 20.3 3.0 18 101-118 67-84 (85)
44 1tiz_A Calmodulin-related prot 22.9 89 0.003 17.9 3.3 24 44-67 7-30 (67)
45 2guz_B Mitochondrial import in 22.5 54 0.0018 21.3 2.3 15 72-86 1-15 (65)
46 1exr_A Calmodulin; high resolu 22.1 1.9E+02 0.0063 19.5 6.4 26 88-113 102-127 (148)
47 2dgz_A Werner syndrome protein 21.9 82 0.0028 22.5 3.4 42 72-118 47-91 (113)
48 2b1u_A Calmodulin-like protein 21.8 83 0.0028 18.4 3.0 13 100-112 37-49 (71)
49 2jnf_A Troponin C; stretch act 21.6 1.9E+02 0.0065 19.4 6.6 27 88-114 110-136 (158)
50 3g2s_A C-terminal fragment of 21.3 1.4E+02 0.0047 22.2 4.7 64 41-115 33-101 (149)
51 3fm5_A Transcriptional regulat 21.3 2E+02 0.007 19.6 5.9 86 35-120 36-144 (150)
52 3nrv_A Putative transcriptiona 21.0 1E+02 0.0034 21.2 3.7 83 35-117 37-141 (148)
53 2f2o_A Calmodulin fused with c 20.8 2.1E+02 0.0073 19.7 6.0 17 7-23 24-40 (179)
54 2kn2_A Calmodulin; S MAPK phos 20.8 1.1E+02 0.0036 19.1 3.6 57 45-119 16-76 (92)
55 2lmt_A Calmodulin-related prot 20.7 86 0.0029 21.6 3.3 28 87-114 101-128 (148)
56 3rm1_A Protein S100-B; alpha-h 20.4 1E+02 0.0035 19.9 3.5 29 85-113 48-80 (92)
57 2xvc_A ESCRT-III, SSO0910; cel 20.4 1.4E+02 0.0048 19.4 4.0 20 55-74 37-56 (59)
58 5pal_A Parvalbumin; calcium-bi 20.2 1.8E+02 0.0061 18.6 5.4 61 9-81 4-67 (109)
59 3dtp_E RLC, myosin regulatory 20.1 2.5E+02 0.0085 20.2 10.9 25 87-112 144-168 (196)
No 1
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.8e-41 Score=258.23 Aligned_cols=119 Identities=34% Similarity=0.507 Sum_probs=108.5
Q ss_pred CeeecCCcccCcHHHHHHHHHhhcCCCC-------CC--CCCcccccchHHHHHHHhhCcccc-cCHHHHHHHHHHhhcC
Q 031131 1 MKILEANAGPLTNFEVFDFLRCKGASKD-------PT--RVLVPVTPSEFKVYDYLVESAACN-QTRNIINEFLEKSKKF 70 (165)
Q Consensus 1 MkIl~~~~a~LSN~EVl~~L~~~~~~~~-------~~--~~~~~l~~~e~e~l~YL~~~p~~~-qt~e~i~~l~~~L~~f 70 (165)
|||+++++++|||||||+||+++++++. ++ ....++.++.+++++||+++||+. |++++|.+|+++|++|
T Consensus 8 Mkil~~~~a~LsN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~ 87 (136)
T 3ayh_A 8 MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEF 87 (136)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHGGGGCCCCHHHHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTT
T ss_pred ceEeccccccccHHHHHHHHHHHHhhhcccccccCCccccccchHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhc
Confidence 9999999999999999999998765321 11 123567778899999999999987 9999999999999999
Q ss_pred CCCHHHHHHHhcCCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHhCC
Q 031131 71 KLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 71 ~LTk~E~LQIvNl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L~ 119 (165)
+|||+|+|||||+||+|+||||+|||+||+||||||+++||++|+++||
T Consensus 88 ~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~IL~~i~~~lp 136 (136)
T 3ayh_A 88 ELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTTFP 136 (136)
T ss_dssp CCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999997
No 2
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=246.57 Aligned_cols=117 Identities=29% Similarity=0.462 Sum_probs=39.2
Q ss_pred CeeecCCcccCcHHHHHHHHHhhcCCCC-------------------CCCCCcccccchHHHHHHHhhCcc---------
Q 031131 1 MKILEANAGPLTNFEVFDFLRCKGASKD-------------------PTRVLVPVTPSEFKVYDYLVESAA--------- 52 (165)
Q Consensus 1 MkIl~~~~a~LSN~EVl~~L~~~~~~~~-------------------~~~~~~~l~~~e~e~l~YL~~~p~--------- 52 (165)
|||+++|+++|||||||+||++++.++. +.....++.++.+++++||+++|+
T Consensus 1 MkIl~~~~a~LSN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~ 80 (161)
T 2ckz_A 1 MKVLEERNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITRNVVNYLSINKNFINQEDEGE 80 (161)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHHHHTTCSHHHHHCC----------CCCCCHHHHHHHHHHHHHHTC------------
T ss_pred CcccchhhhhhhHHHHHHHHHHhhhhccccccchhhhhcccccccccCCCCCccHHHHHHHHHHHHHhCCcccccccccc
Confidence 9999999999999999999998654321 111235677888999999999998
Q ss_pred ---------------cccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHh
Q 031131 53 ---------------CNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEV 117 (165)
Q Consensus 53 ---------------~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~ 117 (165)
+.+++++|++|+++|++|+|||+|+|||||+||+|+||||+|||+||+|||||++++||++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s~vel~~iIEe~e~Rfsee~ie~IL~ii~~~ 160 (161)
T 2ckz_A 81 ERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARFDEKTIEEMLEIISAY 160 (161)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999875
No 3
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=99.88 E-value=1e-22 Score=159.72 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCcccCcHHHHHHHHHhhcCCCCCCCCCcccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCC
Q 031131 6 ANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRP 85 (165)
Q Consensus 6 ~~~a~LSN~EVl~~L~~~~~~~~~~~~~~~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~P 85 (165)
.+...|||+||..+|.+++..+...+...++..+.+++++||.+++ ..++++++.+|++.|.+|+|++.|++||+|+||
T Consensus 37 ~~~~~Lt~sEV~~lL~~~~~~~~~~~~~~els~v~~kTl~Yl~~F~-k~k~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P 115 (152)
T 2c35_A 37 ETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS-RFKNRETIASVRSLLLQKKLHKFELACLANLCP 115 (152)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHHTC-SCCSHHHHHHHHHHHHTSSCCHHHHHHHHHHCC
T ss_pred cccccccHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhcCCCHHHHHHhccCCC
Confidence 4678999999999999876432111111345555699999999998 346999999999999999999999999999999
Q ss_pred CcHHHHHHhhcccccCCCHHHHHHHHHHHHHhCC
Q 031131 86 SSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 86 ts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L~ 119 (165)
.|++|+++||+.++.||+++++++||++|+++..
T Consensus 116 ~t~dEar~lipsl~~r~sdEeLe~ILd~l~k~r~ 149 (152)
T 2c35_A 116 ETAEESKALIPSLEGRFEDEELQQILDDIQTKRS 149 (152)
T ss_dssp SSHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 4
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.80 E-value=2.9e-19 Score=137.77 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=91.3
Q ss_pred CcccCcHHHHHHHHHhhc----CCCCCCCCCcccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhc
Q 031131 7 NAGPLTNFEVFDFLRCKG----ASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIIN 82 (165)
Q Consensus 7 ~~a~LSN~EVl~~L~~~~----~~~~~~~~~~~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvN 82 (165)
+...|||+||..+|++.. ....... ++..+-++|++|+.+++ ...+++++..+.+.|+. +|++.|+.||+|
T Consensus 21 ~a~~Ls~sEv~~lL~~~~~~r~~~~~~~~---~~~~v~~kTl~Yl~~Fs-k~~~~e~~~~v~~lL~~-~L~~fEia~L~N 95 (135)
T 3h0g_D 21 NEDMLTVSEAKILIETVLAQRARETNGEI---PMTDVMKKTVAYFNVFA-RFKTAEATYACERILGN-RFHKFERAQLGT 95 (135)
T ss_dssp HSCBCCHHHHHHHHHHHHHHHHTTCCSCC---CCTTHHHHHHHHHHTTC-TTCSHHHHHHHHHHCCC-CSCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHhcccCCc---chhHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHh-cCCHHHHHHHcc
Confidence 457899999999999642 2111112 33444599999999997 55689999999999999 999999999999
Q ss_pred CCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHhCC
Q 031131 83 IRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 83 l~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L~ 119 (165)
+||.|++|+++||+.+++||+++++++||++|+.+-.
T Consensus 96 L~P~t~dEak~LIpsL~~r~~de~L~~IL~~l~~~r~ 132 (135)
T 3h0g_D 96 LCCEDAEEARTLIPSLANKIDDQNLQGILDELSTLRK 132 (135)
T ss_dssp HCCCCHHHHHHHCGGGTTTSCSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998753
No 5
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=99.64 E-value=6e-16 Score=125.03 Aligned_cols=84 Identities=11% Similarity=0.185 Sum_probs=77.9
Q ss_pred ccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCcHHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 35 PVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 35 ~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
++..+.+++++|+.++++. ++++++.+|++.|..|+|+++|++||+|+||.|++|+++||+.++.||+++++++||++|
T Consensus 102 ~ls~v~~KTLeYl~rFsk~-kn~Esa~elre~L~~~kL~efE~aqLaNL~PeTadEaraLIpSle~rlsdEeLeeILd~L 180 (187)
T 1y14_A 102 GNNKDLKNTMQYLTNFSRF-RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 180 (187)
T ss_dssp SCCHHHHHHHHHHHHHCSC-CSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhcCCCHHHHHHcCcCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 4555679999999999764 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 031131 115 IEVLP 119 (165)
Q Consensus 115 ~e~L~ 119 (165)
+++..
T Consensus 181 ~k~r~ 185 (187)
T 1y14_A 181 SNLET 185 (187)
T ss_dssp HHHCC
T ss_pred HHhhc
Confidence 98753
No 6
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=99.50 E-value=1.7e-14 Score=107.10 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=85.4
Q ss_pred CcccCcHHHHHHHHHhhcCCCCCCCCCcccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC
Q 031131 7 NAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPS 86 (165)
Q Consensus 7 ~~a~LSN~EVl~~L~~~~~~~~~~~~~~~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt 86 (165)
....|||.||..+|.++.... .++.....+++|+.++. +.+++...++++.|..++|++.+..||+|+||.
T Consensus 8 ~~~~lt~sEa~~iL~~~~~~~-------e~s~~~~ktl~y~~kFs--k~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~ 78 (107)
T 1go3_F 8 GERYVTVSEAAEIMYNRAQIG-------ELSYEQGCALDYLQKFA--KLDKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp EEEEECHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred cccccCHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 345799999999999876531 33334489999999985 458899999999999999999999999999999
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHHHHHh
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDLVIEV 117 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~iI~e~ 117 (165)
|+.|+++||.... + ++++++||++|+++
T Consensus 79 t~dElraii~~~~--~-~eel~~ILd~l~k~ 106 (107)
T 1go3_F 79 DLDDLRAIYYKRE--L-PENAEEILEIVRKY 106 (107)
T ss_dssp SHHHHHHHSTTSC--C-CTTHHHHHHHHTTC
T ss_pred CHHHHHHHHhccc--C-cHHHHHHHHHHHHc
Confidence 9999999999974 4 99999999999875
No 7
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=99.50 E-value=3e-15 Score=112.05 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=87.3
Q ss_pred eeecCCcccCcHHHHHHHHHhhcCCCCCCCCCcccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHh
Q 031131 2 KILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNII 81 (165)
Q Consensus 2 kIl~~~~a~LSN~EVl~~L~~~~~~~~~~~~~~~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIv 81 (165)
+|++ ..++|+.||..+|.++.... .+..+...+++|++++. +.+++...++++.|..++|++.++.||+
T Consensus 5 ~ii~--e~~it~~eakeiL~~~~~~~-------~~s~~~~ktl~y~~~Fs--k~~~e~a~~l~e~L~~~~l~~~~~a~Ia 73 (113)
T 4ayb_F 5 YIVE--EHYIPYSVAKKLLSDVIKSG-------SSSNLLQRTYDYLNSVE--KCDAESAQKVVEELSSIISREDVRAVLA 73 (113)
T ss_dssp EEEE--EEEECTTGGGGTTTTTSSSS-------CCCTTHHHHHHHTTTTC--SSCHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred eeec--ccccCHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443 46799999999998764432 22334589999999994 4688999999999999999999999999
Q ss_pred cCCCCcHHHHHHhhcccccC-CCHHHHHHHHHHHHHhC
Q 031131 82 NIRPSSLVEVDSIIEQCDTR-FQEEELQELVDLVIEVL 118 (165)
Q Consensus 82 Nl~Pts~veL~~iIEe~e~R-fsEeqieeIL~iI~e~L 118 (165)
|+||.++.|+.+||...+.| |+++++++||++|++|.
T Consensus 74 nL~P~~~dElrali~s~e~~~~~deeL~~IL~~l~ky~ 111 (113)
T 4ayb_F 74 SICPITPDEVRSILIMDSNRTYTSEDIQKIIDIIRKYI 111 (113)
T ss_dssp HHCCCSSCCCCTTTTTTCCCCCCCTHHHHHHHHC----
T ss_pred HcCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998877 89999999999999885
No 8
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=99.27 E-value=1.7e-11 Score=100.84 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=71.2
Q ss_pred hHHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHhC
Q 031131 40 EFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 40 e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L 118 (165)
-.++++|+.++.. .-+++++..+.+.|..++|++.|+.||+|+||.++.|+.+||..+..||+++++++||+.|+.+-
T Consensus 141 f~KTLdYl~rFSK-fkn~EAv~aVrELL~~~gLheFEiAqLANLcPeTaDEARALIPSL~~k~sDEeLqeILdeLskyR 218 (221)
T 3hou_D 141 LKNTMQYLTNFSR-FRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLE 218 (221)
T ss_dssp HHHHHHHHHHSCS-CCCHHHHHHHHHHHTTSCCCHHHHHHHHHSCCCSHHHHHHHCTTCTTSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcCCChHHhheecccCCCCHHHHHHHHHhhcccCCHHHHHHHHHHHHHhh
Confidence 4899999999864 33678888888888999999999999999999999999999999999999999999999999874
No 9
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=80.25 E-value=0.98 Score=25.69 Aligned_cols=20 Identities=45% Similarity=0.750 Sum_probs=14.7
Q ss_pred cCCCHHHHHHHHHHHHHhCC
Q 031131 100 TRFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L~ 119 (165)
.||+|.||+++|+-+-++|-
T Consensus 7 trfdekqieelldncietfv 26 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 49999999999998877663
No 10
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=70.67 E-value=26 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=20.7
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
+..||+.++..+-.++|++++++|+..+
T Consensus 102 ~~~el~~~l~~~g~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 102 SAAELKHVLTSIGEKLTDAEVDDMLREV 129 (176)
T ss_dssp CHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcccchHHHHHHHHhh
Confidence 5667777777777788888888877654
No 11
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=69.25 E-value=27 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=18.7
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVD 112 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~ 112 (165)
|..+|+.++..+-.++|++++++|+.
T Consensus 103 ~~~el~~~l~~~g~~ls~~ei~~~~~ 128 (153)
T 3i5g_B 103 PEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp CHHHHHHHHHSSSSCCCHHHHHHHHT
T ss_pred eHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 56677777777777788777777664
No 12
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=65.08 E-value=36 Score=26.97 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC----cHHHHHHhhccc-cc-CCCHHHHHHHHHHHHHhCC
Q 031131 56 TRNIINEFLEKSKKFKLAKAEILNIINIRPS----SLVEVDSIIEQC-DT-RFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 56 t~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt----s~veL~~iIEe~-e~-RfsEeqieeIL~iI~e~L~ 119 (165)
+.+.+..-++.|+..|++...+..|+..+|. ++..+...|+-+ ++ -++++++..++..--..|.
T Consensus 72 ~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~ 141 (270)
T 3m66_A 72 DLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT 141 (270)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee
Confidence 4555777888888888888888888888874 445566666666 32 4677766555543323343
No 13
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.12 E-value=9.1 Score=26.49 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=22.8
Q ss_pred cCCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHhCCC
Q 031131 82 NIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVLPP 120 (165)
Q Consensus 82 Nl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L~~ 120 (165)
|.+|-|..|-+-+...+. +|+.+.+..+++||++.-|.
T Consensus 14 ~~~~mT~eEK~~Ls~~I~-~Lp~e~L~~Vi~II~~~~p~ 51 (90)
T 2jns_A 14 KCKPMSYEEKRQLSLDIN-KLPGEKLGRVVHIIQSREPS 51 (90)
T ss_dssp SCCCCCHHHHHHHHHHHT-TSCHHHHTTHHHHHHTTCGG
T ss_pred CCCCCCHHHHHHHHHHHH-HcCHHHHHHHHHHHHhcCcc
Confidence 345555555555555555 46666666777777666543
No 14
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=56.61 E-value=22 Score=30.10 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=49.0
Q ss_pred HHHHHhhCccc-ccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC----cHHHHHHhhccccc--CCCHHHHHHHHHHHH
Q 031131 43 VYDYLVESAAC-NQTRNIINEFLEKSKKFKLAKAEILNIINIRPS----SLVEVDSIIEQCDT--RFQEEELQELVDLVI 115 (165)
Q Consensus 43 ~l~YL~~~p~~-~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt----s~veL~~iIEe~e~--RfsEeqieeIL~iI~ 115 (165)
+.+-|.+.|.- ..+.+.+..-+..|+.+||+..++..++-.+|. +...+...+..+-. -||.+++..|+...=
T Consensus 95 V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P 174 (335)
T 4fp9_B 95 VCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCP 174 (335)
T ss_dssp HHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCG
T ss_pred HHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 44444455542 235677888888888888888888888877774 55666666666643 378887777765443
Q ss_pred Hh
Q 031131 116 EV 117 (165)
Q Consensus 116 e~ 117 (165)
..
T Consensus 175 ~l 176 (335)
T 4fp9_B 175 SV 176 (335)
T ss_dssp GG
T ss_pred hh
Confidence 33
No 15
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=52.93 E-value=40 Score=29.99 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=15.7
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDL 113 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~i 113 (165)
|..||..++..+-.++|++++++|++.
T Consensus 393 S~eELr~vL~~lGe~LSdeEIdeLfke 419 (440)
T 3u0k_A 393 SAAELRHVMTNLGEKLTDEEVDEMIRE 419 (440)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 355555555555556666666665544
No 16
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=51.87 E-value=37 Score=28.75 Aligned_cols=56 Identities=5% Similarity=0.109 Sum_probs=42.0
Q ss_pred HHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC----cHHHHHHhhccc
Q 031131 41 FKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPS----SLVEVDSIIEQC 98 (165)
Q Consensus 41 ~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt----s~veL~~iIEe~ 98 (165)
.++-..+...|. .....+..++.+|...||++..+..||..+|. ++..|..-|+-+
T Consensus 61 ~~i~~il~~~P~--il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL 120 (335)
T 4fp9_B 61 AHINELLSVRRG--ASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHCSS--CCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc--cchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHH
Confidence 456677778875 45778889999999999999999999999995 334444444433
No 17
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=46.92 E-value=63 Score=26.69 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC----cHH--HHHHhhcccccC-CCHHHHHHHHHHHHHhCC
Q 031131 56 TRNIINEFLEKSKKFKLAKAEILNIINIRPS----SLV--EVDSIIEQCDTR-FQEEELQELVDLVIEVLP 119 (165)
Q Consensus 56 t~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt----s~v--eL~~iIEe~e~R-fsEeqieeIL~iI~e~L~ 119 (165)
+.+.+...+..|+..+++..++..+|...|. +.+ .+..-|.-+.+. ++.+++-.++..--..|.
T Consensus 82 ~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~ 152 (343)
T 3mva_O 82 TPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFS 152 (343)
T ss_dssp CHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhhe
Confidence 5788999999999999999999999999996 222 355555555443 677777666654444443
No 18
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=46.52 E-value=15 Score=24.68 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 031131 101 RFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 101 RfsEeqieeIL~iI~e~L~ 119 (165)
+||++|+..|+.-|.+.||
T Consensus 81 ~Lsd~ei~~l~~Yi~~~~p 99 (99)
T 3dp5_A 81 MIPPADALKIGEYVVASFP 99 (99)
T ss_dssp TSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 7999999999999999887
No 19
>1iwp_G Glycerol dehydratase gamma subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: a.23.2.1 PDB: 1mmf_G*
Probab=46.45 E-value=20 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHHhhcCCCCHHHHHHHhc
Q 031131 54 NQTRNIINEFLEKSKKFKLAKAEILNIIN 82 (165)
Q Consensus 54 ~qt~e~i~~l~~~L~~f~LTk~E~LQIvN 82 (165)
...++.|-++.++|+||.=||.|.|.|.+
T Consensus 81 ~VPD~riLeiYnaLRP~RSTk~ELl~iA~ 109 (141)
T 1iwp_G 81 AIPDERILAIYNALRPFRSSQAELLAIAD 109 (141)
T ss_dssp TSCHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhCCCcccHHHHHHHHH
Confidence 35689999999999999999999887764
No 20
>1eex_G Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: a.23.2.1 PDB: 1dio_G* 1egm_G* 1egv_G* 1iwb_G* 1uc4_G* 1uc5_G* 3auj_G*
Probab=44.14 E-value=21 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.4
Q ss_pred ccCHHHHHHHHHHhhcCCCCHHHHHHHhc
Q 031131 54 NQTRNIINEFLEKSKKFKLAKAEILNIIN 82 (165)
Q Consensus 54 ~qt~e~i~~l~~~L~~f~LTk~E~LQIvN 82 (165)
...++.|-++.++|+||+=||.|.|.|.+
T Consensus 113 ~VPD~riLeiYnaLRP~RSTK~ELl~iA~ 141 (173)
T 1eex_G 113 AVPDDRILEIYNALRPYRSTKEELLAIAD 141 (173)
T ss_dssp TSCHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhCCCcccHHHHHHHHH
Confidence 35789999999999999999999888865
No 21
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=43.20 E-value=12 Score=24.48 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=20.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCC
Q 031131 99 DTRFQEEELQELVDLVIEVLPPLPNQ 124 (165)
Q Consensus 99 e~RfsEeqieeIL~iI~e~L~~~~~~ 124 (165)
-.+||++|.+.||..+.+.+-..|=+
T Consensus 2 kd~lt~eq~~aILkaLdeaIe~GPWe 27 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDAIEKGPWD 27 (57)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCch
Confidence 46899999999999998887555543
No 22
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=42.91 E-value=77 Score=22.81 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHhh-CcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCC----CCcHHHHHHhhcccccCC-CHHHHHHHHHHH
Q 031131 41 FKVYDYLVE-SAACNQTRNIINEFLEKSKKFKLAKAEILNIINIR----PSSLVEVDSIIEQCDTRF-QEEELQELVDLV 114 (165)
Q Consensus 41 ~e~l~YL~~-~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~----Pts~veL~~iIEe~e~Rf-sEeqieeIL~iI 114 (165)
..++++|+. +|.. ......--|+--|+. .||..|+-++++.. +-+.++|+..|...=... |+++|.++-+.+
T Consensus 9 ~siv~WLRaGYP~G-VP~~Dy~PLlALL~r-~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arL 86 (103)
T 2kvc_A 9 TSIVAWLRAGYPEG-IPPTDSFAVLALLCR-RLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRARL 86 (103)
T ss_dssp HHHHHHHHHHCTTC-CCHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCC-CCCcchHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 456777763 5543 334444455544444 57777777777665 678889999999888775 899998888777
Q ss_pred HH
Q 031131 115 IE 116 (165)
Q Consensus 115 ~e 116 (165)
..
T Consensus 87 aa 88 (103)
T 2kvc_A 87 AA 88 (103)
T ss_dssp GG
T ss_pred Hh
Confidence 54
No 23
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=42.81 E-value=38 Score=28.09 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHhcCCCC----cHHHHHHhhcccccC-CCHHHHHHHHHHHHH
Q 031131 58 NIINEFLEKSKKFKLAKAEILNIINIRPS----SLVEVDSIIEQCDTR-FQEEELQELVDLVIE 116 (165)
Q Consensus 58 e~i~~l~~~L~~f~LTk~E~LQIvNl~Pt----s~veL~~iIEe~e~R-fsEeqieeIL~iI~e 116 (165)
+....++..|..+|++++.+-.||..+|. ++..|...++-..+- ++++++-.++..--.
T Consensus 49 ~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 49 TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSH
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCH
Confidence 34456677778999999999999999995 777888888888764 799888887765444
No 24
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=41.04 E-value=16 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.642 Sum_probs=16.5
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
+|+|++|+++||.-+-..|
T Consensus 5 SKYsd~qvE~ll~eli~VL 23 (76)
T 2jr2_A 5 SKYSNERVEKIIQDLLDVL 23 (76)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 6999999999998887665
No 25
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=39.95 E-value=67 Score=21.34 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=14.3
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 88 LVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 88 ~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
..++..++..+-..++++++..++..+
T Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 103 AAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 344444444445556666666665544
No 26
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=39.14 E-value=52 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=13.2
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 88 LVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 88 ~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
..|+..++..+...++++++.+++..+
T Consensus 120 ~~el~~~l~~~g~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 120 IKDLRRVAKELGENLTEEELQEMIAEA 146 (169)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 334444444444455555555555443
No 27
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=38.83 E-value=18 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=16.7
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
+|+|++|+++||.-+-..|
T Consensus 5 SKYsd~qvE~ll~eli~VL 23 (80)
T 2juw_A 5 SKYSNTQVESLIAEILVVL 23 (80)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 6999999999998887666
No 28
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=38.52 E-value=1.3e+02 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=41.9
Q ss_pred cCHHHHHHHHHHh-hcCCCCHHHHHHHhcCCCC----cHHHHHHhhccc--ccCCCHHHHHHHHHHH
Q 031131 55 QTRNIINEFLEKS-KKFKLAKAEILNIINIRPS----SLVEVDSIIEQC--DTRFQEEELQELVDLV 114 (165)
Q Consensus 55 qt~e~i~~l~~~L-~~f~LTk~E~LQIvNl~Pt----s~veL~~iIEe~--e~RfsEeqieeIL~iI 114 (165)
.+.+.+..-+..| +.+|++..++..++-.+|. +...+..-|+-. +--||++++..++...
T Consensus 106 ~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 106 FSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp SCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3567799999999 6899999999999887774 444455555532 2347887776665543
No 29
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=38.35 E-value=18 Score=25.06 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=16.6
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
+|+|++|+++||.-+-..|
T Consensus 5 SKYsd~qvE~ll~eli~VL 23 (80)
T 2juz_A 5 SKYSDAQLSAIVNDMIAVL 23 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 6999999999998887665
No 30
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=38.02 E-value=18 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=16.5
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
+|+|++|+++||.-+-..|
T Consensus 5 SKYsd~qvE~ll~eli~VL 23 (83)
T 2jrx_A 5 SRYSDEQVEQLLAELLNVL 23 (83)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 6999999999998877665
No 31
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=37.85 E-value=18 Score=25.21 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=16.7
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
+|+|++|+++||.-+-..|
T Consensus 5 SKYsd~qvE~ll~eli~VL 23 (83)
T 2jpq_A 5 SKYTDEQVEKILAEVALVL 23 (83)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 6999999999998887666
No 32
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=33.84 E-value=76 Score=21.69 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=52.4
Q ss_pred ccccchHHHHHHHhhCccc--------ccCHHHHHHHHHHhhcCCCCHH------HHHHHhcCCCCcH----------HH
Q 031131 35 PVTPSEFKVYDYLVESAAC--------NQTRNIINEFLEKSKKFKLAKA------EILNIINIRPSSL----------VE 90 (165)
Q Consensus 35 ~l~~~e~e~l~YL~~~p~~--------~qt~e~i~~l~~~L~~f~LTk~------E~LQIvNl~Pts~----------ve 90 (165)
.++..++.++.+|...|++ ..++..+...+..|..-||-.- -.-..+-+-|.-. ..
T Consensus 35 ~lt~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~~~~ 114 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHHHEH 114 (146)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHHHHH
Confidence 4566788999999988732 2478999999999977666321 2223333333322 22
Q ss_pred HHHhhcccccCCCHHHHHHHHHHHHHh
Q 031131 91 VDSIIEQCDTRFQEEELQELVDLVIEV 117 (165)
Q Consensus 91 L~~iIEe~e~RfsEeqieeIL~iI~e~ 117 (165)
.......+-..|++++++.+..++...
T Consensus 115 ~~~~~~~~~~~l~~~e~~~l~~~l~~l 141 (146)
T 3tgn_A 115 TLLTYEQVATQFTPNEQKVIQRFLTAL 141 (146)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333445555689999998888777653
No 33
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=32.18 E-value=34 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=17.2
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDL 113 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~i 113 (165)
|..+|+.++..+-.++|++++++|+..
T Consensus 103 ~~~el~~~l~~~g~~ls~~e~~~l~~~ 129 (159)
T 3i5g_C 103 SSAEIRNVLKMLGERITEDQCNDIFTF 129 (159)
T ss_dssp CHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 455566666666667777777776654
No 34
>3ixt_P Fusion glycoprotein F1; FAB, RSV, synagis, motavizumab, monoclonal, complex, cell ME cleavage on PAIR of basic residues; 2.75A {Human respiratory syncytial virus}
Probab=30.48 E-value=34 Score=18.92 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHhhc
Q 031131 74 KAEILNIINIRPSSLVEVDSIIE 96 (165)
Q Consensus 74 k~E~LQIvNl~Pts~veL~~iIE 96 (165)
..|.+-+||-.|.|...+.++.+
T Consensus 2 d~EL~~~i~~Mp~s~gq~~lMl~ 24 (26)
T 3ixt_P 2 NSELLSLINDMPITNDQKKLMSN 24 (26)
T ss_dssp CHHHHHHHHHSCCCHHHHHHHHH
T ss_pred cHHHHHHHhcCCCCcchHHhhhc
Confidence 36889999999999988887765
No 35
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=30.41 E-value=32 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCHHHHHHHhcCCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHhC
Q 031131 72 LAKAEILNIINIRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 72 LTk~E~LQIvNl~Pts~veL~~iIEe~e~RfsEeqieeIL~iI~e~L 118 (165)
|+......|...+|+|..+|..| .-.-.+.-+.--+.||++|+.+.
T Consensus 38 f~D~tL~eiA~~~P~t~~eL~~i-~Gvg~~k~~~yG~~~l~~I~~~~ 83 (89)
T 1wud_A 38 FNDATLIEMAEQMPITASEMLSV-NGVGMRKLERFGKPFMALIRAHV 83 (89)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHTS-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhCCCCHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999876 32332222333468999998874
No 36
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=30.30 E-value=1.2e+02 Score=21.91 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHhh-CcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCC--------CCcHHHHHHhhcccccCC-CHHHHHHH
Q 031131 41 FKVYDYLVE-SAACNQTRNIINEFLEKSKKFKLAKAEILNIINIR--------PSSLVEVDSIIEQCDTRF-QEEELQEL 110 (165)
Q Consensus 41 ~e~l~YL~~-~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~--------Pts~veL~~iIEe~e~Rf-sEeqieeI 110 (165)
..++++|+. +|.. .......-|+--|+. .||..|+-+++... |-+.++|...|...=..+ ++++|+++
T Consensus 14 ~siv~WLRaGYPeG-VP~~Dy~PLlALL~R-~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV 91 (107)
T 3ol3_A 14 DNVLGWLHKGYPEG-VPPKDYFALLALLKR-SLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQV 91 (107)
T ss_dssp HHHHHHHHHHCTTC-BCGGGHHHHHHHHTC-CCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred HHHHHHHHccCCCC-CCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 567788864 5543 222333344444444 47777777776432 344445554444443332 45555444
Q ss_pred HHHH
Q 031131 111 VDLV 114 (165)
Q Consensus 111 L~iI 114 (165)
-..+
T Consensus 92 ~arL 95 (107)
T 3ol3_A 92 AARL 95 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 37
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=29.52 E-value=1.2e+02 Score=19.98 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=15.8
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 88 LVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 88 ~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
..|+..++..+-.+++++++++++..+
T Consensus 98 ~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 98 KAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 444444454555567777777766654
No 38
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.65 E-value=1.4e+02 Score=20.04 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=6.0
Q ss_pred ccCcHHHHHHHHHh
Q 031131 9 GPLTNFEVFDFLRC 22 (165)
Q Consensus 9 a~LSN~EVl~~L~~ 22 (165)
+.||-.|+..+|+.
T Consensus 38 G~i~~~e~~~~l~~ 51 (161)
T 3fwb_A 38 GFLDYHELKVAMKA 51 (161)
T ss_dssp SEECHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 34444444444443
No 39
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=27.27 E-value=36 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.8
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 031131 100 TRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 100 ~RfsEeqieeIL~iI~e~L 118 (165)
.+||++|+..|++-|.+.|
T Consensus 60 ~~Lsd~ei~~l~~yi~~~~ 78 (78)
T 1gks_A 60 GRADREDLVKAIEYMLSTL 78 (78)
T ss_dssp TTBCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhhC
Confidence 4799999999999887643
No 40
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.96 E-value=1.7e+02 Score=21.22 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHhh-CcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCC----CCcHHHHHHhhcccccCC-CHHHHHHHHHHH
Q 031131 41 FKVYDYLVE-SAACNQTRNIINEFLEKSKKFKLAKAEILNIINIR----PSSLVEVDSIIEQCDTRF-QEEELQELVDLV 114 (165)
Q Consensus 41 ~e~l~YL~~-~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~----Pts~veL~~iIEe~e~Rf-sEeqieeIL~iI 114 (165)
..++++|+. +|.. ......--|+--|+ -.||..|+-+++... +-+.++|+..|...=... ++++|.++.+.+
T Consensus 11 ~siv~WLRAGYP~G-VP~~Dy~PLLALL~-r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arL 88 (112)
T 2lky_A 11 AKIAAWLNAGYPEG-VPGPDRVPLLALLT-RRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREEDIERVRRHL 88 (112)
T ss_dssp HHHHHHHHHHCSSC-CCHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCC-CCCcchHHHHHHHc-ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 567788864 5543 23344444443333 457777777766654 677888888888877764 899988888777
Q ss_pred HH
Q 031131 115 IE 116 (165)
Q Consensus 115 ~e 116 (165)
..
T Consensus 89 aa 90 (112)
T 2lky_A 89 AL 90 (112)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 41
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=24.61 E-value=64 Score=22.53 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=46.4
Q ss_pred ccccchHHHHHHHhhCccc---------ccCHHHHHHHHHHhhcCCCCHHH------HHHHhcCCCCcHHH---HHHhhc
Q 031131 35 PVTPSEFKVYDYLVESAAC---------NQTRNIINEFLEKSKKFKLAKAE------ILNIINIRPSSLVE---VDSIIE 96 (165)
Q Consensus 35 ~l~~~e~e~l~YL~~~p~~---------~qt~e~i~~l~~~L~~f~LTk~E------~LQIvNl~Pts~ve---L~~iIE 96 (165)
.++..++.++.||...+.. ..++..+...++.|..-||-.-+ .-..+-+-|.-... +...+.
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 117 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAIS 117 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHHH
Confidence 3555678888998765432 24788899999998655542211 11122222221111 111111
Q ss_pred -ccccCCCHHHHHHHHHHHHHh
Q 031131 97 -QCDTRFQEEELQELVDLVIEV 117 (165)
Q Consensus 97 -e~e~RfsEeqieeIL~iI~e~ 117 (165)
.+-..|++++++.+..++...
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l 139 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEEL 139 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHH
Confidence 144579999998888877654
No 42
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=24.24 E-value=1.7e+02 Score=19.72 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=15.6
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
+..|+..++..+-.+++++++..++..+
T Consensus 113 ~~~El~~~l~~~g~~~~~~~~~~~~~~~ 140 (161)
T 1dtl_A 113 DLEELKIMLQATGETITEDDIEELMKDG 140 (161)
T ss_dssp EHHHHGGGGTTC--CCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3455555555555567777777666554
No 43
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=23.88 E-value=64 Score=20.26 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 031131 101 RFQEEELQELVDLVIEVL 118 (165)
Q Consensus 101 RfsEeqieeIL~iI~e~L 118 (165)
+||++|+..|+.-|.+..
T Consensus 67 ~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 67 MIPPADALKIGEYVVASF 84 (85)
T ss_dssp TSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 799999999999998754
No 44
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=22.92 E-value=89 Score=17.93 Aligned_cols=24 Identities=4% Similarity=0.003 Sum_probs=11.7
Q ss_pred HHHHhhCcccccCHHHHHHHHHHh
Q 031131 44 YDYLVESAACNQTRNIINEFLEKS 67 (165)
Q Consensus 44 l~YL~~~p~~~qt~e~i~~l~~~L 67 (165)
++.+-.......+.+.+..++..+
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~ 30 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAF 30 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHh
Confidence 333333334455666666555443
No 45
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=22.52 E-value=54 Score=21.29 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.7
Q ss_pred CCHHHHHHHhcCCCC
Q 031131 72 LAKAEILNIINIRPS 86 (165)
Q Consensus 72 LTk~E~LQIvNl~Pt 86 (165)
.|..|.++|+|+.|.
T Consensus 1 mt~~EA~~ILgv~~~ 15 (65)
T 2guz_B 1 MTLDESCKILNIEES 15 (65)
T ss_dssp CCHHHHHHHTTCCGG
T ss_pred CCHHHHHHHhCCCCC
Confidence 377899999999876
No 46
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=22.14 E-value=1.9e+02 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.403 Sum_probs=13.3
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHH
Q 031131 88 LVEVDSIIEQCDTRFQEEELQELVDL 113 (165)
Q Consensus 88 ~veL~~iIEe~e~RfsEeqieeIL~i 113 (165)
..++..++..+-.+++++++.+|+..
T Consensus 102 ~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 102 AAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33344444444445666666666554
No 47
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=21.86 E-value=82 Score=22.48 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCHHHHHHHhcCCCCcHHHHHHhhc---ccccCCCHHHHHHHHHHHHHhC
Q 031131 72 LAKAEILNIINIRPSSLVEVDSIIE---QCDTRFQEEELQELVDLVIEVL 118 (165)
Q Consensus 72 LTk~E~LQIvNl~Pts~veL~~iIE---e~e~RfsEeqieeIL~iI~e~L 118 (165)
|+......|...+|+|..+|..|=- .--+|| ++||++|+.+.
T Consensus 47 f~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-----~~~L~~I~~~~ 91 (113)
T 2dgz_A 47 ATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-----APLWEVIKHFC 91 (113)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-----HHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-----HHHHHHHHHHH
Confidence 6888899999999999999987622 222345 47888887764
No 48
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=21.78 E-value=83 Score=18.38 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=6.2
Q ss_pred cCCCHHHHHHHHH
Q 031131 100 TRFQEEELQELVD 112 (165)
Q Consensus 100 ~RfsEeqieeIL~ 112 (165)
..++++++..++.
T Consensus 37 ~~~~~~~~~~~~~ 49 (71)
T 2b1u_A 37 QPLPQEELDAMIR 49 (71)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3445555544444
No 49
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=21.58 E-value=1.9e+02 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=13.7
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 88 LVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 88 ~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
..++..++..+-.+++++++..|+..+
T Consensus 110 ~~el~~~l~~~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 110 TDVMREILAELDETLSSEDLDAMIDEI 136 (158)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHHh
Confidence 444444444444455665555555443
No 50
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=21.30 E-value=1.4e+02 Score=22.21 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCcHHHHHHhhcccccCC-----CHHHHHHHHHHHH
Q 031131 41 FKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCDTRF-----QEEELQELVDLVI 115 (165)
Q Consensus 41 ~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pts~veL~~iIEe~e~Rf-----sEeqieeIL~iI~ 115 (165)
.++.+.....|. ...++++.+.++|+.- ...+.|+ ++.-|..+|..|-.|| +.+-+++++.++.
T Consensus 33 leicD~I~~~~~--~pk~a~ral~krl~~~--n~~v~l~-------AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~ 101 (149)
T 3g2s_A 33 NGFCEQLNEDFE--GPPLATRLLAHKIQSP--QEWEAIQ-------ALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVS 101 (149)
T ss_dssp HHHHHHGGGSSS--HHHHHHHHHHHHHTCS--SHHHHHH-------HHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCC--cHHHHHHHHHHHHcCC--CHHHHHH-------HHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHc
Confidence 577788877753 4568999999998732 2333333 3446889999999998 7777778777775
No 51
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.28 E-value=2e+02 Score=19.65 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=51.4
Q ss_pred ccccchHHHHHHHhhCcc--c--------ccCHHHHHHHHHHhhcCCCCHHH------HHHHhcCCCC-------cHHHH
Q 031131 35 PVTPSEFKVYDYLVESAA--C--------NQTRNIINEFLEKSKKFKLAKAE------ILNIINIRPS-------SLVEV 91 (165)
Q Consensus 35 ~l~~~e~e~l~YL~~~p~--~--------~qt~e~i~~l~~~L~~f~LTk~E------~LQIvNl~Pt-------s~veL 91 (165)
.++..++.++.+|...+. + ..++..+..+++.|..-||-.-+ .-.+|-+-|. -....
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 115 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARV 115 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHH
Confidence 345567888888865432 1 24788999999999765552211 1111112111 12223
Q ss_pred HHhhcccccCCCHHHHHHHHHHHHHhCCC
Q 031131 92 DSIIEQCDTRFQEEELQELVDLVIEVLPP 120 (165)
Q Consensus 92 ~~iIEe~e~RfsEeqieeIL~iI~e~L~~ 120 (165)
..+...+-..|++++++.+..++...+-.
T Consensus 116 ~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 144 (150)
T 3fm5_A 116 DAAHGRYFEGIPDTVVNQMRDTLQSIAFP 144 (150)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 34445555689999999999999887643
No 52
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.99 E-value=1e+02 Score=21.18 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=49.2
Q ss_pred ccccchHHHHHHHhhCccc---------ccCHHHHHHHHHHhhcCCCCHHHH------HHHhcCCCCc-------HHHHH
Q 031131 35 PVTPSEFKVYDYLVESAAC---------NQTRNIINEFLEKSKKFKLAKAEI------LNIINIRPSS-------LVEVD 92 (165)
Q Consensus 35 ~l~~~e~e~l~YL~~~p~~---------~qt~e~i~~l~~~L~~f~LTk~E~------LQIvNl~Pts-------~veL~ 92 (165)
.++..++.++.+|...+.. ..++..+...++.|..-||-.-+. -..+-+-|.- ...+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~ 116 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHHHH
Confidence 4666678899999876532 247888999999997666532221 1111111111 11222
Q ss_pred HhhcccccCCCHHHHHHHHHHHHHh
Q 031131 93 SIIEQCDTRFQEEELQELVDLVIEV 117 (165)
Q Consensus 93 ~iIEe~e~RfsEeqieeIL~iI~e~ 117 (165)
.+...+-..|++++++.+..++...
T Consensus 117 ~~~~~~~~~l~~~e~~~l~~~l~~l 141 (148)
T 3nrv_A 117 EREKQLLEEFEEAEKDQLFILLKKL 141 (148)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455679999999888877654
No 53
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=20.79 E-value=2.1e+02 Score=19.67 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=11.3
Q ss_pred CcccCcHHHHHHHHHhh
Q 031131 7 NAGPLTNFEVFDFLRCK 23 (165)
Q Consensus 7 ~~a~LSN~EVl~~L~~~ 23 (165)
+++.||-.|+..+|+..
T Consensus 24 ~~G~i~~~e~~~~l~~~ 40 (179)
T 2f2o_A 24 GDGTITTKELGTVMRSL 40 (179)
T ss_dssp CSSCBCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHHc
Confidence 45667777777777654
No 54
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.76 E-value=1.1e+02 Score=19.11 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHhhCcccccCHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCcHHHHHHhhcccc----cCCCHHHHHHHHHHHHHhCC
Q 031131 45 DYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIINIRPSSLVEVDSIIEQCD----TRFQEEELQELVDLVIEVLP 119 (165)
Q Consensus 45 ~YL~~~p~~~qt~e~i~~l~~~L~~f~LTk~E~LQIvNl~Pts~veL~~iIEe~e----~RfsEeqieeIL~iI~e~L~ 119 (165)
+.+-.......+.+.+..++..+. +.+ +..++..++..++ .+++=+ +.+.++....+
T Consensus 16 ~~~D~d~~G~i~~~el~~~l~~~g-~~~--------------~~~~~~~l~~~~d~~~dg~i~~~---eF~~~~~~~~~ 76 (92)
T 2kn2_A 16 KVFDKDQNGYISASELRHVMINLG-EKL--------------TDEEVEQMIKEADLDGDGQVNYE---EFVKMMMTVRG 76 (92)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTT-CCC--------------CHHHHHHHHHHHCSSCCSSEEHH---HHHHHHHHHTT
T ss_pred HHHCCCCCCeEcHHHHHHHHHHhC-CCC--------------CHHHHHHHHHHhCCCCCCcEeHH---HHHHHHHhccC
Confidence 333333334556666665554431 223 3445555665554 356644 45555555543
No 55
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.70 E-value=86 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=16.2
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVDLV 114 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~iI 114 (165)
|..||+.++..+-.++|++++++|+..+
T Consensus 101 ~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 101 SPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 3444455555555667777777666543
No 56
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=20.43 E-value=1e+02 Score=19.89 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCcHHHHHHhhcccc----cCCCHHHHHHHHHH
Q 031131 85 PSSLVEVDSIIEQCD----TRFQEEELQELVDL 113 (165)
Q Consensus 85 Pts~veL~~iIEe~e----~RfsEeqieeIL~i 113 (165)
+-+..++..++.+++ .+++=++.-.++..
T Consensus 48 ~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~ 80 (92)
T 3rm1_A 48 IKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80 (92)
T ss_dssp CCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 345566666666654 34565444444433
No 57
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.43 E-value=1.4e+02 Score=19.43 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.6
Q ss_pred cCHHHHHHHHHHhhcCCCCH
Q 031131 55 QTRNIINEFLEKSKKFKLAK 74 (165)
Q Consensus 55 qt~e~i~~l~~~L~~f~LTk 74 (165)
.+++.+-.++++|...||-+
T Consensus 37 V~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 37 VEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp CCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHCCCee
Confidence 57788888888888877744
No 58
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=20.24 E-value=1.8e+02 Score=18.56 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=31.6
Q ss_pred ccCcHHHHHHHHHhhcCCCCCCCCCcccccchHHHHHHHhhCcccccCHHHHHHHHHHhhcC---CCCHHHHHHHh
Q 031131 9 GPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKF---KLAKAEILNII 81 (165)
Q Consensus 9 a~LSN~EVl~~L~~~~~~~~~~~~~~~l~~~e~e~l~YL~~~p~~~qt~e~i~~l~~~L~~f---~LTk~E~LQIv 81 (165)
..+|..|+-++++.... . + .+.- .+.+.++... ....+.+..+.+.+-.- .++..|..+++
T Consensus 4 ~~~s~~ei~~~~~~~d~-~---g---~i~~--~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l 67 (109)
T 5pal_A 4 KVLKADDINKAISAFKD-P---G---TFDY--KRFFHLVGLK---GKTDAQVKEVFEILDKDQSGFIEEEELKGVL 67 (109)
T ss_dssp GTSCHHHHHHHHHHTCS-T---T---CCCH--HHHHHHHTCT---TCCHHHHHHHHHHHCTTCSSEECHHHHHTHH
T ss_pred CcCCHHHHHHHHHHhCC-C---C---cCcH--HHHHHHHhhc---cCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 45888999999887644 1 1 2221 2344444332 23455555555554221 25666655444
No 59
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=20.12 E-value=2.5e+02 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=12.5
Q ss_pred cHHHHHHhhcccccCCCHHHHHHHHH
Q 031131 87 SLVEVDSIIEQCDTRFQEEELQELVD 112 (165)
Q Consensus 87 s~veL~~iIEe~e~RfsEeqieeIL~ 112 (165)
|..+|..++ .+-.+++++++..|+.
T Consensus 144 s~~El~~~l-~~g~~~~~~~~~~l~~ 168 (196)
T 3dtp_E 144 EETLKRSLT-TWGEKFSQDEVDQALS 168 (196)
T ss_dssp HHHHHHHHH-HSSSCCCHHHHHHHHH
T ss_pred cHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence 344444444 4445555555555543
Done!