BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031132
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 219 bits (559), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 112/130 (86%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
M+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
H+++NM IMLIGNK DL RR V EEGE FA+EHGLIFME SAKTA NVEEAFI TA
Sbjct: 122 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181
Query: 121 IYKKIQDGVF 130
IY+KIQ G+F
Sbjct: 182 IYRKIQQGLF 191
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/124 (82%), Positives = 108/124 (87%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct: 51 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 110
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
H+N+NM IMLIGNK DL RR V EEGE FA+EHGLIFME SAKTA NVEEAFI TA
Sbjct: 111 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 170
Query: 121 IYKK 124
IY+K
Sbjct: 171 IYEK 174
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 101/126 (80%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I + + IKLQIWDTAGQ FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR
Sbjct: 71 IIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 130
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
N N I+LIGNK DL +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A
Sbjct: 131 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 190
Query: 121 IYKKIQ 126
IY+ IQ
Sbjct: 191 IYQNIQ 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 172 bits (437), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 100/123 (81%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I + + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR
Sbjct: 56 IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
N N I+LIGNK DL +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A
Sbjct: 116 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175
Query: 121 IYK 123
IY+
Sbjct: 176 IYQ 178
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 97/131 (74%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
++ + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR
Sbjct: 66 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
A+ N+ ++L GNK DL R V+ E +FA+E+ L+F+E SA T +NVEEAF+K A T
Sbjct: 126 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185
Query: 121 IYKKIQDGVFD 131
I KI G D
Sbjct: 186 ILNKIDSGELD 196
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 96/131 (73%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR
Sbjct: 51 IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E SA T +NVEEAF++ A
Sbjct: 111 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170
Query: 121 IYKKIQDGVFD 131
I KI+ G D
Sbjct: 171 ILNKIESGELD 181
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 92/124 (74%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR
Sbjct: 52 IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 111
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E SA T ++VEEAF++ A
Sbjct: 112 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARK 171
Query: 121 IYKK 124
I K
Sbjct: 172 ILNK 175
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 147 bits (370), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 94/125 (75%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I+++NK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T R++F+++ W+++ ++
Sbjct: 51 ISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRY 110
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A N+ +L+GNKCDL +R V+++EG + A HG+ F+E SAK A NVE+AF A I
Sbjct: 111 AMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
Query: 122 YKKIQ 126
K++Q
Sbjct: 171 KKRVQ 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 91/124 (73%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I + K +KLQIWDTAG E FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR
Sbjct: 49 IINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 108
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E SA T ++VEEAF++ A
Sbjct: 109 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARK 168
Query: 121 IYKK 124
I K
Sbjct: 169 ILNK 172
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 62 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 121
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ IML+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 122 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
Query: 122 YK 123
Y+
Sbjct: 182 YR 183
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 86/122 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAGQE +R IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 47 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ IML+GNK DL H RAV T+E FA+++ L F+E SA + NVEEAF I
Sbjct: 107 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
Query: 122 YK 123
Y+
Sbjct: 167 YR 168
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 86/121 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 71 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 130
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ IML+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 131 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Query: 122 Y 122
Y
Sbjct: 191 Y 191
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 96/135 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++ ++ + WL + R++
Sbjct: 55 LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ + LIGNK DLAH RAV TEE + FA+E+ L+F E SA ++NV++AF + TI
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
Query: 122 YKKIQDGVFDVSNES 136
Y+K+ D+ + S
Sbjct: 175 YQKVSKHQMDLGDSS 189
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 91/127 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 58 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
Query: 122 YKKIQDG 128
K++ G
Sbjct: 178 KKRMGPG 184
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 58 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
Query: 122 YKKI 125
K++
Sbjct: 178 KKRM 181
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 86/122 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 50 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ IML+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 110 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
Query: 122 YK 123
Y+
Sbjct: 170 YR 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 41 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 100
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 101 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
Query: 122 YKKI 125
K++
Sbjct: 161 KKRM 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 48 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 108 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
Query: 122 YKKI 125
K++
Sbjct: 168 KKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 67 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 126
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 127 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
Query: 122 YKKI 125
K++
Sbjct: 187 KKRM 190
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 48 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 108 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
Query: 122 YKKI 125
K++
Sbjct: 168 KKRM 171
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 89/125 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +H
Sbjct: 48 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+A++ M++GNKCD+ +R VS E GE+ A ++G+ FME SAK NVE AF A I
Sbjct: 108 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
Query: 122 YKKIQ 126
K+
Sbjct: 168 KAKMD 172
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 89/125 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +H
Sbjct: 50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+A++ M++GNKCD+ +R VS E GE+ A ++G+ FME SAK NVE AF A I
Sbjct: 110 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
Query: 122 YKKIQ 126
K+
Sbjct: 170 KAKMD 174
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 71 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 130
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ IML+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 131 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Query: 122 Y 122
Y
Sbjct: 191 Y 191
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 88/123 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 75 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNKCDL ++ V ++FA G+ F+E SAK A NVE++F AA I
Sbjct: 135 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
Query: 122 YKK 124
K+
Sbjct: 195 KKR 197
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 53 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 112
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ I L+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 113 ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
Query: 122 Y 122
Y
Sbjct: 173 Y 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H
Sbjct: 47 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A++N+ I L+GNK DL H RAV T+E FA+++GL F+E SA + NVE AF I
Sbjct: 107 ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
Query: 122 Y 122
Y
Sbjct: 167 Y 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 89/124 (71%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+G KCDL ++ V ++FA G+ F+E SAK A NVE++F+ AA I
Sbjct: 110 ASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
Query: 122 YKKI 125
K++
Sbjct: 170 KKRM 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
+NK IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ +F ++ WL++ R +A++
Sbjct: 53 NNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS 112
Query: 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122
N+ I+L+GNK DL H R ++ + Q+AK+ L F+E SA A NVE AF + IY
Sbjct: 113 NIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 87/124 (70%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
++ +D +KLQ+WDTAGQE FRS+T +YYR A LL+YD+T + +F+++ +WL + +
Sbjct: 52 VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
+A ++ +ML+GNK D AH R V E+GE+ AKE+GL FME SAKT NV+ AF A
Sbjct: 112 YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171
Query: 121 IYKK 124
+ ++
Sbjct: 172 LKRR 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++
Sbjct: 51 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNK DL ++ V ++FA G+ F+E SAK A NVE+AF+ AA I
Sbjct: 111 ASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
Query: 122 YKKI 125
K++
Sbjct: 171 KKRM 174
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++
Sbjct: 51 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ +L+GNK DL ++ V ++FA G+ F+E SAK A NVE+AF+ AA I
Sbjct: 111 ASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
Query: 122 YKKI 125
K++
Sbjct: 171 KKRM 174
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 91/132 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I ++NK IK QIWDTAG E +R+IT +YYRGA GAL+VYDI++ ++ + WL + R++
Sbjct: 52 IEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELREN 111
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ + LIGNK DLAH RAV T+E + FA E+ ++F E SA + NV++AF + I
Sbjct: 112 ADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
Query: 122 YKKIQDGVFDVS 133
++ + D+S
Sbjct: 172 FQMVSKHQVDLS 183
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT TF ++ W + +H
Sbjct: 45 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH 104
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
AN ++L+GNK D+ R V+ ++GE AKE G+ F+E+SAK NV E F A I
Sbjct: 105 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
+KI
Sbjct: 164 QEKI 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT TF ++ W + +H
Sbjct: 45 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEH 104
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
AN ++L+GNK D R V+ ++GE AKE G+ F+E+SAK NV E F A I
Sbjct: 105 ANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
+KI
Sbjct: 164 QEKI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +H
Sbjct: 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
AN ++L+GNK D+ R V+ ++GE AKE G+ F+E+SAK NV E F A I
Sbjct: 122 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
Query: 122 YKKI 125
+KI
Sbjct: 181 QEKI 184
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +H
Sbjct: 49 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 108
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
AN ++L+GNK D+ R V+ ++GE AKE G+ F+E+SAK NV E F A I
Sbjct: 109 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
Query: 122 YKKI 125
+KI
Sbjct: 168 QEKI 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R++
Sbjct: 71 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY 130
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAT 120
A +N+ +LIGNK DL+ R VS E + A+ + ++ +E SAK + NVEEAF++ A
Sbjct: 131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190
Query: 121 I 121
+
Sbjct: 191 L 191
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +H
Sbjct: 45 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEH 104
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
AN ++L+GNK D R V+ ++GE AKE G+ F+E+SAK NV E F A I
Sbjct: 105 ANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
+KI
Sbjct: 164 QEKI 167
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++
Sbjct: 63 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 122
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A + + +L+GNKCDL +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 123 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++
Sbjct: 50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A + + +L+GNKCDL +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++
Sbjct: 50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A + + +L+GNKCDL +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ + +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ H
Sbjct: 67 VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH 126
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A A + +ML+GNK DL+ R V TEE FA+ +GL+F+E SA + NVE AF I
Sbjct: 127 AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
Query: 122 YKKI 125
+ K+
Sbjct: 187 FAKV 190
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ + +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ H
Sbjct: 52 VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH 111
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A A + +ML+GNK DL+ R V TEE FA+ +GL+F+E SA + NVE AF I
Sbjct: 112 AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
Query: 122 YKKI 125
+ K+
Sbjct: 172 FAKV 175
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 82/118 (69%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ I+LQ+WDTAGQE FRS+ SY R +A A++VYDIT +F W++D R
Sbjct: 50 LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 83/118 (70%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F + W++D R
Sbjct: 46 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG 105
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R ++ EEGEQ AKE ++F+E SAKT NV++ F + A+ +
Sbjct: 106 SDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 84/118 (71%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R
Sbjct: 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ + K I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L W++ ++
Sbjct: 68 VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY 127
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT 120
A+ + ++L+GNK D R ++ ++GE+FA++ G+ F EASAK NV+E F+K
Sbjct: 128 ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187
Query: 121 IYKKI 125
I KK+
Sbjct: 188 ILKKM 192
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 122 bits (306), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ + +KLQIWDTAGQE FRSIT+SYYR A +L YDIT E+F L WL + Q+
Sbjct: 68 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 127
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ + +L+GNK DLA RR VS + E+F++ + ++E SAK + NVE+ F+ A +
Sbjct: 128 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 49 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 108
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 109 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
Query: 122 YK 123
K
Sbjct: 169 PK 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
K
Sbjct: 168 PK 169
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT +ETF +W+++ ++
Sbjct: 50 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQ 109
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ ++ I L GNK DLA++R V EE + +A ++ L+FME SAKTA NV + F+ A +
Sbjct: 110 ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
Query: 122 YK 123
K
Sbjct: 170 PK 171
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 81/118 (68%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F W++D R
Sbjct: 45 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 104
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 105 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 81/118 (68%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ I+LQ+WDTAG E FRS+ SY R +A A++VYDIT +F W++D R
Sbjct: 57 LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 80/117 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT +TF +W+++ ++
Sbjct: 47 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
A+ N+ I L GNK DLA +RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 107 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 80/117 (68%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT +TF +W+++ ++
Sbjct: 45 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 104
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
A+ N+ I L GNK DLA +RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 105 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
++K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++
Sbjct: 50 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109
Query: 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
N ++L+GNKCD+ R VS+E G Q A G F EASAK NV++ F + I +K
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%)
Query: 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 66
K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 67 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126
++L+GNKCD+ R V TE+G+ A++ G F EASAK +V +AF + I K+
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
Query: 127 D 127
D
Sbjct: 190 D 190
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 82/122 (67%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAG E + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 47 VCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+FME SAKT+ NV E F+ A +
Sbjct: 107 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
Query: 122 YK 123
K
Sbjct: 167 PK 168
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 78/117 (66%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +++ +K +IWDTAGQE + S+ YYRGAA A++V+D+T + +F W+++ +
Sbjct: 54 LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
N NM + L GNK DL R V+ E+ + +A+E+GL FME SAKTA NV+E F + A
Sbjct: 114 GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 81/122 (66%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F +W+++ ++
Sbjct: 49 VCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 108
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
A+ N+ I L GNK DLA++RAV +E + +A ++ L+F E SAKT+ NV E F A +
Sbjct: 109 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
Query: 122 YK 123
K
Sbjct: 169 PK 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ ++LQ+WDTAG E FRS+ SY R + A++VYDIT +F W++D R
Sbjct: 50 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
++++ ++LQ+WDTAG E FRS+ SY R + A++VYDIT +F W++D R
Sbjct: 60 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 64 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+++ IML+GNK DLA +R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 79/117 (67%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D+ +K +IWDTAG E + S+ YYRGA A++VYDIT +TF +W+++ ++
Sbjct: 47 VCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
A+ N+ I L GNK DLA +RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 107 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 77/120 (64%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D P++LQ+WDTAGQE FRS+ SY R +A A++VYDIT R++F + W++D
Sbjct: 43 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 102
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
++ I L+GNK DL R V+ EEG Q A+E+ F E SAK N++ F KTA+ +
Sbjct: 103 RGKDVIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%)
Query: 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
+K IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI +E+F + W + ++ N
Sbjct: 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN 127
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
++L+GNKCDL R V E+G + A + G F EASAK NV++ F + I +K+
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
Query: 126 QD 127
+
Sbjct: 188 NE 189
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 4/138 (2%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I++D KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF L +WL + +
Sbjct: 57 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 116
Query: 62 ANANMTI-MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
N + L+GNK D R V EG +FA++H +F+EASAKT V+ AF +
Sbjct: 117 CTRNDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEK 175
Query: 121 IYKKIQDGVFDVSNESYG 138
I + G+++ N++ G
Sbjct: 176 IIQ--TPGLWESENQNSG 191
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%)
Query: 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
++K IKLQIWDTAG E +R+IT +YYRGA G +L YDIT E+FN + W + ++
Sbjct: 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWD 112
Query: 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
N ++L+GNKCD R VS+E G Q A G F EASAK NV++ F + I +K
Sbjct: 113 NAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 72/112 (64%)
Query: 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
K IWDTAGQE FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH ++ +
Sbjct: 55 KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 70 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+ GNKCDL R V + + +A IF+E SAK A N+ E FI+ + I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+TI+ +K +IWDTAGQE F S+ YYR A AL+VYD+T+ ++F W+++ +
Sbjct: 45 VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 104
Query: 62 ANANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
A+ ++ I L+GNK D R V+ EEGE+ A+E GL+F E SAKT +NV + F+
Sbjct: 105 ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%)
Query: 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
K IWDTAG E FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH ++ +
Sbjct: 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 70 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+ GNKCDL R V + + +A IF+E SAK A N+ E FI+ + I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%)
Query: 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
K IWDTAGQE F S+ YYRG+A A++VYDIT++++F L W+++ ++H N+ +
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 70 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ GNKCDL+ R V ++ +++A+ G I +E SAK A N+EE F
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I+ + +KLQIWDTAGQE FR+IT +YYRG G ++VYD+T E+F ++ WL + Q+
Sbjct: 51 VEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN 110
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++ +L+GNK D R+ V TE+ +FA + G+ E SAK NVEE F
Sbjct: 111 CD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++
Sbjct: 40 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 99
Query: 62 ANANMTIMLIGNKCDLA 78
A+ N+ +L+GNKCDL
Sbjct: 100 ASENVNKLLVGNKCDLT 116
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
+ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA N
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 141
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
I+LIGNK DL +R V+ + + A ++G+ + E SA T QNVE+A I K++
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
Query: 126 QDGV 129
+ V
Sbjct: 202 EQCV 205
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D + LQ+WDTAGQE FRSI +SY+R A G LL+YD+T ++F ++ W++
Sbjct: 70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129
Query: 62 ANANMTIMLIGNKCDLAH------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
A+ + IML+GNK D+ ++ V GE+ A +G +F E SAK N+ EA +
Sbjct: 130 AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189
Query: 116 KTAATIYKK 124
A + K+
Sbjct: 190 HLAREVKKR 198
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+ ID + IK+Q+WDTAGQE FR S+ + YYR + VYD+T +F+ L +W+E+ +Q
Sbjct: 62 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121
Query: 61 HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN---VEEAFIK 116
H AN + +L+GNKCDL V T+ ++FA H + E SAK + VE F+
Sbjct: 122 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181
Query: 117 TA 118
A
Sbjct: 182 LA 183
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 80/121 (66%), Gaps = 5/121 (4%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
+ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 127
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++ I K++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 126 Q 126
+
Sbjct: 188 E 188
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
+ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 127
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++ I K++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 126 QDGV 129
+ V
Sbjct: 188 EKCV 191
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMT 67
I LQ+WDTAG E FRS+T +++R A G LL++D+T ++F ++ +W+ + HA + N
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127
I+L GNK DL +RAV EE + A+++G+ + E SA N+ A I K+++
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 128 GV 129
V
Sbjct: 190 SV 191
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+ ID + IK+Q+WDTAGQE FR S+ + YYR + VYD T +F+ L +W+E+ +Q
Sbjct: 71 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQ 130
Query: 61 HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE--EAFIKT 117
H AN + +L+GNKCDL V T+ ++FA H E SAK + + EA T
Sbjct: 131 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXT 190
Query: 118 AA 119
A
Sbjct: 191 LA 192
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I K + L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+
Sbjct: 48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
+ + ++GNK DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I K + L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+
Sbjct: 62 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 121
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
+ + ++GNK DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 122 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
+ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W ++ ANA N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYCEN 127
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ I K + L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+
Sbjct: 48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
+ + ++GNK DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
+ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W ++ ANA N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYCEN 127
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQH 61
ID++ +L I DTAGQE F ++ Y R G LLV+ +T R +F + + R
Sbjct: 47 VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
++LIGNK DL H+R V+ EEG+Q A++ + +MEASAK NV++AF + I
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 122 YK 123
K
Sbjct: 167 RK 168
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
IK IWDTAGQE + SI YYRGA A++V+DI+ T + +W+ + ++N I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 69 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
+L+ NK D ++ V E +++A+++ L+F++ SAKT N++ F A IYK I
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I ++++ ++L +WDTAGQE F +IT++YYRGA +LV+ T RE+F ++SW E
Sbjct: 47 IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ L+ NK DL + EE E AK L F S K NV E F
Sbjct: 107 V-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
+ +D++ + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L SW ++
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
A N +++GNK DL +R+ + ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW----LED 57
+ +D++ + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L SW L
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
A N +++GNK DL +R+ + ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
+ +D++ + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L SW ++
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
A N +++GNK D +R+ + ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
+ +D++ + +QIWDTAG E F+S+ ++YRGA +LV+D+T TF L SW ++
Sbjct: 50 VMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
A N +++GNK DL +R+ + ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 2 ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+T+D +K +Q+WDTAGQE F+S+ ++YRGA +LVYD+T +F ++ SW ++
Sbjct: 50 VTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109
Query: 61 HANAN----MTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 114
HAN N +++GNK D ++ VS + ++ AK G I SAK A NV+ AF
Sbjct: 110 HANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQH 61
++D P +L I DTAGQE F ++ Y R G LLV+ I R++FN + + + R
Sbjct: 51 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 110
Query: 62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+ ++L+GNK DL +R V E F H + + EASAK NV+EAF + +
Sbjct: 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 122 YK 123
K
Sbjct: 171 RK 172
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L++W ++ +
Sbjct: 49 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108
Query: 62 ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
A+ + +++GNK D++ R+ VSTEE + + +++G + E SAK A NV AF
Sbjct: 109 ADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L++W ++ +
Sbjct: 51 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 110
Query: 62 ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
A+ + +++GNK D++ R+ VSTEE + + +++G + E SAK A NV AF
Sbjct: 111 ADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAGQE + +I +Y+R G L V+ IT E+F A + E R
Sbjct: 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
+ N+ +L+GNK DL +R VS EE + A++ + ++E SAKT NV++ F
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178
Query: 121 IY-KKIQD 127
I +K++D
Sbjct: 179 IRARKMED 186
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAGQE + +I +Y+R G L V+ IT E+F A + E R
Sbjct: 47 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
+ N+ +L+GNK DL +R VS EE + A++ + ++E SAKT NV++ F
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 121 IY-KKIQD 127
I +K++D
Sbjct: 167 IRARKMED 174
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAGQE + +I +Y+R G L V+ IT E+F A + E R
Sbjct: 55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
+ N+ +L+GNK DL +R VS EE + A++ + ++E SAKT NV++ F
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 121 IY-KKIQD 127
I +K++D
Sbjct: 175 IRARKMED 182
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L++W ++ +
Sbjct: 53 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 112
Query: 62 ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
A+ + +++GNK D+ R+ VSTEE + + K++G + E SAK + NV AF
Sbjct: 113 ADVKEPESFPFVILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAGQE + +I +Y+R G L V+ IT E+F A + E R
Sbjct: 45 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
+ N+ +L+GNK DL +R VS EE + A + + ++E SAKT NV++ F
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ +D + + LQIWDTAGQE F+S+ +YRGA LL + + R++F +L +W ++ +
Sbjct: 49 LEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYY 108
Query: 62 ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
A+ + +++GNK D R V+TEE + + E+G ++E SAK NV AF
Sbjct: 109 ADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAG E + +I +Y+R G LLV+ IT E+F A + E R
Sbjct: 48 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 107
Query: 61 HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
A + + ++++GNK DL RR V EE A+E G+ ++E SAKT NV++ F
Sbjct: 108 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
Query: 120 TIYKK 124
I K
Sbjct: 168 EIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAG E + +I +Y+R G LLV+ IT E+F A + E R
Sbjct: 44 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 103
Query: 61 HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
A + + ++++GNK DL RR V EE A+E G+ ++E SAKT NV++ F
Sbjct: 104 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
Query: 120 TIYKK 124
I K
Sbjct: 164 EIRTK 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDA 58
TID++ + ++I DTAGQE +I R + R G +LVYDIT R +F L + L++
Sbjct: 70 TIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127
Query: 59 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKT 117
++ N+T++L+GNK DL H R VSTEEGE+ A E F E SA T + N+ E F +
Sbjct: 128 KK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
Query: 118 AATIYKK 124
+ ++
Sbjct: 186 CREVRRR 192
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + +++ I DTAG E + +I +Y+R G L V+ IT E+F A + E R
Sbjct: 47 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
+ N+ +L+GNK DL +R VS EE + A++ + ++E SAKT NV++ F
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 121 IY-KKIQD 127
I +K++D
Sbjct: 167 IRARKMED 174
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNKCDL R V T++ + AK +G+ F+E SAKT Q VE+AF
Sbjct: 122 KDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
++ ++ ++L+GNKCDL R V T++ + A+ +G+ F+E SAKT Q V++AF
Sbjct: 105 KDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
I K
Sbjct: 164 IRK 166
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHA 62
N + LQIWD GQ + Y GA G LLVYDIT ++F +L W ++ + +
Sbjct: 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES 112
Query: 63 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
+ L+GNK DL H R + E+ +F +E+G SAKT +V F K AA I
Sbjct: 113 ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + L+I DTAG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 46 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 105
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
++ ++L+GNKCDL R V E+G+ A++ + F+E+SAK+ NV E F
Sbjct: 106 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + L+I DTAG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
++ ++L+GNKCDL R V E+G+ A++ + F+E+SAK+ NV E F
Sbjct: 104 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 51 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 111 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 50 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 110 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + L+I DTAG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
++ ++L+GNKCDL R V E+G+ A++ F+E+SAK+ NV E F
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
+ +D + L+I DTAG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
++ ++L+GNKCDL R V E+G+ A++ F+E+SAK+ NV E F
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 62 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
++ ++ ++L+GNKCDL R V T++ + A+ +G+ F+E SAKT Q V++AF
Sbjct: 122 KDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 180
Query: 121 IYK 123
I K
Sbjct: 181 IRK 183
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GN+CDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNRCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DT GQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG+E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DT GQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 49 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
++ ++ ++L+GNK DL R V T++ + A+ +G+ F+E SAKT Q V++AF
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
I K
Sbjct: 164 IRK 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
IK +WDTAGQE + YY GA+GA+L +D+T R T +LA W+++ + I
Sbjct: 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120
Query: 69 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128
++ NK D+ +R+ +S + + K + E SAKTA N F+ A I+ D
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL-ARIFTGRPDL 179
Query: 129 VFDVSN 134
+F VSN
Sbjct: 180 IF-VSN 184
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ ++ ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAG E + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNKCDLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
++ ++ ++L+GNK DL R V T++ + A+ +G+ F+E SAKT Q V++AF
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
I K
Sbjct: 164 IRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62 ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
++ ++ ++L+GNK DL R V T++ + A+ +G+ F+E SAKT Q V++AF
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
I K
Sbjct: 164 IRK 166
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNK DLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTAGQE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNK DLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A +
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 51 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 109
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 110 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 155
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
IDN+ L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
+ ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
IDN+ L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
+ ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
IDN+ L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 56 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 115
Query: 63 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
+ ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK NV++ F
Sbjct: 116 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
IDN+ L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
+ ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE F + YY A A++ +D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
++T+ L + DTAGQ+ + + S+ G G +LVY +T +F + S + +
Sbjct: 64 IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHE 123
Query: 61 -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
H + ++L+GNK DL+ R V EG++ A+ G FME+SA+ Q + F K
Sbjct: 124 GHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ 183
Query: 120 TI 121
I
Sbjct: 184 EI 185
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
+ +D + + L +WDTAGQE + + YRGA +L + + + ++ N L W+ + R+
Sbjct: 50 VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109
Query: 61 HANANMTIMLIGNKCDLA--------HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE 111
A N+ I+L+G K DL H +++ +GE+ K+ G ++E S+KT QNV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168
Query: 112 EAF 114
F
Sbjct: 169 AVF 171
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAGQE + + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTA QE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNK DLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKXDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ ID + L I DTA QE + ++ Y R G L V+ I ++F + + E ++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62 ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+++ + ++L+GNK DLA R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKXDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 54 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 112
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 113 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 161
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 60 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 118
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 119 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ +D + L +WDTAGQE + + YRGA +L + + + ++ ++A W+ + R
Sbjct: 47 VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 106
Query: 61 HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQN 109
+A + I+L+G K DL + ++T +GE+ K G I++E S+KT QN
Sbjct: 107 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 110 VEEAF 114
V+ F
Sbjct: 166 VKAVF 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
PIK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+
Sbjct: 58 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
I+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQ 60
I +D+ P L+I DTAG E F S+ Y + G +LVY + +++F + + R
Sbjct: 44 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103
Query: 61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++L+GNK DL R VS+ EG A+E G FME SAK+ V+E F
Sbjct: 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I+ D LQI DT G F ++ R +LVY IT R++ L E +
Sbjct: 43 VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102
Query: 61 HAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
++ IML+GNKCD + R V + E E A+ FME SAK NV+E F
Sbjct: 103 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D + L +WDTAGQE + + YRGA LL + + + ++ ++ WL + +
Sbjct: 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKH 106
Query: 61 HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGLI-FMEASAKTAQN 109
+A + I+L+G K DL + +++T +GE+ K G + ++E S+KT QN
Sbjct: 107 YA-PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 110 VEEAF 114
V+ F
Sbjct: 166 VKAVF 170
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
IK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+ I
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 111
Query: 69 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 159
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
IK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+ I
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 112
Query: 69 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 160
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
IK +WDTAG E F + YY A A++++D+T R T+ ++ +W D + N+ I
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 119
Query: 69 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
+L GNK D+ R+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 120 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLED 57
+IT++ + LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L D
Sbjct: 46 LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ IML+GNK DL R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 106 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
+IT++ + LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L D
Sbjct: 41 LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 100
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ IML+GNK DL R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 101 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
+IT++ + LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L D
Sbjct: 46 LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ IML+GNK DL R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 106 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
+IT++ + LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L D
Sbjct: 44 LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 103
Query: 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ IML+GNK DL R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 104 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 50 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 109
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 110 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169
Query: 109 NVEEAF 114
V E F
Sbjct: 170 GVREVF 175
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 44 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 109 NVEEAF 114
V E F
Sbjct: 164 GVREVF 169
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
V E F
Sbjct: 168 GVREVF 173
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 44 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 109 NVEEAF 114
V E F
Sbjct: 164 GVREVF 169
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 49 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 109 NVEEAF 114
V E F
Sbjct: 169 GVREVF 174
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
V E F
Sbjct: 168 GVREVF 173
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 47 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 109 NVEEAF 114
V E F
Sbjct: 167 GVREVF 172
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 47 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 109 NVEEAF 114
V E F
Sbjct: 167 GVREVF 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
V E F
Sbjct: 168 GVREVF 173
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y +L+ + + +F ++ A W + R
Sbjct: 48 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 166
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 167 RGLKTVF 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y +L+ + + +F ++ A W + R
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 165 RGLKTVF 171
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y +L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y +L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
+I+ D LQI DT G F ++ R +LV+ +T +++ L + Q
Sbjct: 48 VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ 107
Query: 61 HANA--NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++ +ML+GNKCD +R V T E + A+E FME SAK NV+E F
Sbjct: 108 IKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 2 ITIDNKPIKLQIW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE--- 56
+TI + + ++++ DTAG + ++ Y+ G A+LV+D++ E+F +W E
Sbjct: 64 VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123
Query: 57 DARQHANANMTIMLIGNKCDLAHRR-AVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAF 114
AR + +L+ NK DL +R V + + +A + L F + SA ++ + F
Sbjct: 124 SARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPF 183
Query: 115 IKTAATIYKKIQDGV 129
+ A T Y+ +D V
Sbjct: 184 LSIATTFYRNYEDKV 198
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
+ + KP+ L IWDTAGQ+ + + +Y A+ LL +D+T +F+++ + H
Sbjct: 75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134
Query: 62 ANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQ 108
+ I+++G K DL ++ V+ G++ A+ G + ++E SA+
Sbjct: 135 FCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD 194
Query: 109 NVEEAFIKTA 118
NV F + A
Sbjct: 195 NVHAVFQEAA 204
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
N+ I+L+GNK DL H R V +EEG A ++E SAKT +
Sbjct: 126 FXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 109 NVEEAF 114
V E F
Sbjct: 186 GVREVF 191
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 51 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 169
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 170 RGLKTVF 176
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 63 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 181
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 182 RGLKTVF 188
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 190 RGLKTVF 196
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 190 RGLKTVF 196
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 54 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 172
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 173 RGLKTVF 179
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
N+ I+L+GNK DL H R V +EEG A ++E SAKT +
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 109 NVEEAF 114
V E F
Sbjct: 186 GVREVF 191
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAG E + + Y L+ + I ++ ++ +H
Sbjct: 49 IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL H R V EEG A G +ME SAKT
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 109 NVEEAF 114
V E F
Sbjct: 169 GVREVF 174
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
N+ I+L+GNK DL H R V +EEG A ++E SAKT +
Sbjct: 106 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F+H+ A W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F+H+ A W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F+H+ A W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 315 RGLKTVF 321
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ ++ + L +WDTAGQE + + YRGA +L + + + ++ +++ W+ + +
Sbjct: 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108
Query: 61 HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQN 109
+A + I+L+G K DL + ++T +GE+ K G ++E S+K+ +N
Sbjct: 109 YA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Query: 110 VEEAF 114
V+ F
Sbjct: 168 VKGVF 172
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
I +D K ++L +WDTAGQE + Y L+ + I ++ ++ +H
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62 ANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
N+ I+L+GNK DL + + V EG A G +ME SAKT
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
V E F
Sbjct: 166 GVREVF 171
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDAR 59
++++D +P++LQ+ DTAGQ+ F + Y LL + + +F +++ W+ + R
Sbjct: 60 VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 60 QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKT 106
H I+L+G + DL + V E + A+E ++E SA T
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 107 AQNVEEAF 114
+N++E F
Sbjct: 179 QKNLKEVF 186
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F ++ A W + R
Sbjct: 47 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 165
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 166 RGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAG E + + Y L+ + + +F ++ A W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 190 RGLKTVF 196
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H + I+L+G K DL + ++ +G A+E G + ++E SA T
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H + I+L+G K DL + ++ +G A+E G + ++E SA T
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 164 RGLKTVF 170
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D KP+ L +WDTAGQE + + Y L+ + + +F ++ A W + R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
H + I+L+G K DL + ++ +G A+E G + ++E SA T
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 164 RGLKTVF 170
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
I +D K ++L +WDTAGQE + + Y L+ + + ++ ++ W+ + +
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK- 124
Query: 61 HANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFA-KEHGLIFMEASAKTA 107
H N+ I+L+ NK DL H R V T++G A + ++E SAKT
Sbjct: 125 HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184
Query: 108 QNVEEAF 114
+ V E F
Sbjct: 185 EGVREVF 191
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D+KP+ L +WDTAGQE + + Y L+ + + ++ ++ A W + R
Sbjct: 50 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
H + I+L+G K DL + ++ +G AKE + ++E SA T
Sbjct: 110 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 168
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 169 RGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D+KP+ L +WDTAGQE + + Y L+ + + ++ ++ A W + R
Sbjct: 51 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
H + I+L+G K DL + ++ +G AKE + ++E SA T
Sbjct: 111 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 169
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 170 RGLKTVF 176
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 34/146 (23%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-------ETF------ 48
+ +D KP+ L +WDTAGQE + + Y G DIT R + F
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 49 -------NHLASWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGE 89
N A W + R H N I+L+G K DL + ++ +G
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 90 QFAKEHGLI-FMEASAKTAQNVEEAF 114
AKE G + ++E SA T + ++ F
Sbjct: 165 AMAKEIGAVKYLECSALTQRGLKTVF 190
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
+ +D+KP+ L +WDTAGQE + + Y L+ + + ++ ++ A W + R
Sbjct: 44 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 61 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
H + I+L+G K DL + ++ +G AKE + ++E SA T
Sbjct: 104 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKTVF 169
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+D++P+ L++ DTA ++ R+ R Y A L+VY + R++F+ +S+LE HA
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 63 NA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 104
++ +L+GNK D+A R V+ EG A G +F E SA
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
ID + I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 64 ANMTIMLIGNKCDL-----------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
N ++L+G K DL HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 110 VEEAF-IKTAATIYK 123
V + F + T A + K
Sbjct: 191 VRDIFHVATLACVNK 205
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
ID + I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 64 ANMTIMLIGNKCDL-----------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
N ++L+G K DL HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 169
Query: 110 VEEAF-IKTAATIYK 123
V + F + T A + K
Sbjct: 170 VRDIFHVATLACVNK 184
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
ID + I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 66 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 64 ANMTIMLIGNKCDLA-----------HRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
N ++L+G K DL HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 126 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 185
Query: 110 VEEAF-IKTAATIYK 123
V + F + T A + K
Sbjct: 186 VRDIFHVATLACVNK 200
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
N+ L +WDTAGQE + + Y + LL + + R +F+++++ E +H
Sbjct: 67 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 126
Query: 66 MTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122
+L+G K DL + V+ +EG+ ++ G + ++EAS+ + E F K+ I+
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
N+ L +WDTAGQE + + Y + LL + + R +F+++++ E +H
Sbjct: 68 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 127
Query: 66 MTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122
+L+G K DL + V+ +EG+ ++ G + ++EAS+ + E F K+ I+
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
++L +WDT+G + ++ Y + LL +DI+R ET + L W + + +
Sbjct: 58 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR- 116
Query: 68 IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
++LIG K D L+H++ +S E+G AK+ G I++E SA T++ +
Sbjct: 117 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176
Query: 115 IKTAATI 121
+TA+ +
Sbjct: 177 FRTASML 183
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
++L +WDT+G + ++ Y + LL +DI+R ET + L W + + +
Sbjct: 59 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-R 117
Query: 68 IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
++LIG K D L+H++ +S E+G AK+ G I++E SA T++ +
Sbjct: 118 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177
Query: 115 IKTAATI 121
+TA+ +
Sbjct: 178 FRTASML 184
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 2 ITIDNKPIKLQIWDTAGQESF-RSITR-SYYRGAAGALLVYDITRRETFNHLASW-LEDA 58
+T+D + L + DT E +S ++ S +G + ++VY I R +F + ++
Sbjct: 45 LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR 104
Query: 59 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
R H ++ I+L+GNK DLA R VS EEG A F+E SA NV E F
Sbjct: 105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
++L +WDT+G + ++ Y + LL +DI+R ET + L W + + +
Sbjct: 75 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-R 133
Query: 68 IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
++LIG K D L+H++ +S E+G AK+ G I++E SA T++ +
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
Query: 115 IKTAATI 121
+TA+ +
Sbjct: 194 FRTASML 200
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ +D + ++L +WDTAGQE + + Y + L+ + I ++ ++ W+ +
Sbjct: 51 VEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL- 109
Query: 61 HANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
H + I+L+G K DL + ++ V+++EG+ A + G + E SAKT
Sbjct: 110 HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTG 169
Query: 108 QNVEEAF 114
V E F
Sbjct: 170 YGVREVF 176
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+T+ K L ++DTAGQE + + Y L+ + + +F ++ W+ + ++
Sbjct: 59 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118
Query: 61 HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTA 107
+A N+ +LIG + DL + + E+G++ AKE G ++E SA T
Sbjct: 119 YA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 177
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 178 KGLKTVF 184
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
I L +W+ G+ + + + L+VY IT R +F + L L ARQ +
Sbjct: 59 ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
I L +W+ G+ + + + L+VY IT R +F + L L ARQ +
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
I L +W+ G+ + + + L+VY IT R +F + L L ARQ +
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 115 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
I L +W+ G+ + + + L+VY IT R +F + L L ARQ +
Sbjct: 90 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 145
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
I +D + L ++D Q+ R + ++VY +T + +F + L L A
Sbjct: 42 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101
Query: 59 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
RQ ++ I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 102 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
I +D + L ++D Q+ R + ++VY +T + +F + L L A
Sbjct: 47 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 59 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
RQ ++ I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 107 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
I +D + + L ++D Q R + A L+V+ +T R +F+ + L R
Sbjct: 65 IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124
Query: 61 -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++ ++L+GNK DLA R VS EEG A +E SA N E F
Sbjct: 125 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
I +D + L ++D Q+ R + ++VY +T + +F + L L A
Sbjct: 47 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 59 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
RQ ++ I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 107 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
I +D + + L ++D Q + + A L+V+ +T R +F+ + L R
Sbjct: 44 IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103
Query: 61 -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++ ++L+GNK DLA R VS EEG A +E SA N E F
Sbjct: 104 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
I +D + + L ++D Q + + A L+V+ +T R +F+ + L R
Sbjct: 54 IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 113
Query: 61 -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
+ ++ ++L+GNK DLA R VS EEG A +E SA N E F
Sbjct: 114 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
T++++ KL IWD GQ+S RS R+Y+ G + V D R+ L S L +
Sbjct: 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 59 RQHANANMTIMLIGNKCDLA 78
R A T+++ NK DL
Sbjct: 116 RL---AGATLLIFANKQDLP 132
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
T++++ KL IWD GQ+S RS R+Y+ G + V D R+ L S L +
Sbjct: 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 59 RQHANANMTIMLIGNKCDLA 78
R A T+++ NK DL
Sbjct: 116 RL---AGATLLIFANKQDLP 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
T++++ KL IWD GQ+S RS R+Y+ G + V D R+ L S L +
Sbjct: 54 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 113
Query: 59 RQHANANMTIMLIGNKCDLA 78
R A T+++ NK DL
Sbjct: 114 RL---AGATLLIFANKQDLP 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T++ K I +WD GQ+ R + R Y++ G + V D RE A L+ Q
Sbjct: 67 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126
Query: 63 NANMTIMLI-GNKCDLAHRRAVSTEEGEQFAKEH 95
++L+ NK D+ + VS E ++ +H
Sbjct: 127 ELRDAVLLVFANKQDMPNAMPVS-ELTDKLGLQH 159
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
T++++ KL IWD GQ+S RS R+Y+ G + V D R+ L S L +
Sbjct: 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEE 115
Query: 59 RQHANANMTIMLIGNKCDLA 78
R A T+++ NK DL
Sbjct: 116 RL---AGATLLIFANKQDLP 132
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 50 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 102
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 103 HRIINDREMRDAIILIFANKQDLP 126
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 51 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 104 HRIINDREMRDAIILIFANKQDLP 127
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 91 HRIINDREXRDAIILIFANKQDLP 114
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 360 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 412
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 413 HRIINDREMRDAIILIFANKQDLP 436
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 91 HRIINDREMRDAIILIFANKQDLP 114
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 91 HRIINDREMRDAIILIFANKQDLP 114
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T++ K I +WD GQ+ R + + Y++ G + V D RE +A L+
Sbjct: 55 TVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVD 114
Query: 63 NA-NMTIMLIGNKCDLAHRRAVS 84
+ ++L NK DL + A+S
Sbjct: 115 ELRDAVLLLFANKQDLPNAMAIS 137
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANA 64
+ ++IWD GQ FRS+ Y RG + + D RE N L + L+ +
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG-- 124
Query: 65 NMTIMLIGNKCDLAH 79
+ ++++GNK DL +
Sbjct: 125 -IPVLVLGNKRDLPN 138
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 48 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 108 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 167 KGLKNVF 173
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 47 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 166 KGLKNVF 172
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 45 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 104
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 105 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 163
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 164 KGLKNVF 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 51 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 170 KGLKNVF 176
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 46 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 165 KGLKNVF 171
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 51 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 170 KGLKNVF 176
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 54 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 113
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 114 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 172
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 173 KGLKNVF 179
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 46 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 165 KGLKNVF 171
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKNVF 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 47 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 166 KGLKNVF 172
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 RGLKNVF 169
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
T++++ KL IWD G +S RS R+Y+ G + V D R+ L S L +
Sbjct: 39 TLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 98
Query: 59 RQHANANMTIMLIGNKCDLA 78
R A T+++ NK DL
Sbjct: 99 RL---AGATLLIFANKQDLP 115
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
T++ K I +WD GQ+ R + R Y++ G + V D RE N L ED
Sbjct: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 114
Query: 58 ARQHANANMTIMLIGNKCDLAH 79
+ A +++ NK DL +
Sbjct: 115 ELRDA----VLLVFANKQDLPN 132
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
T++ K I +WD GQ+ R + R Y++ G + V D RE N L ED
Sbjct: 54 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 113
Query: 58 ARQHANANMTIMLIGNKCDLAH 79
+ A +++ NK DL +
Sbjct: 114 ELRDA----VLLVFANKQDLPN 131
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
T++ K I +WD GQ+ R + R Y++ G + V D RE N L ED
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 262
Query: 58 ARQHANANMTIMLIGNKCDLAH 79
+ A +++ NK DL +
Sbjct: 263 ELRDA----VLLVFANKQDLPN 280
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 38 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T++ + I +WD GQ+ R + R YY G + V D RE ++DAR+
Sbjct: 55 TVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDDAREEL 107
Query: 63 N--------ANMTIMLIGNKCDLAH 79
+ + I++ NK DL +
Sbjct: 108 HRMINEEELKDAIILVFANKQDLPN 132
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
T++ K I +WD GQ+ R + R Y++ G + V D RE N L ED
Sbjct: 38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97
Query: 58 ARQHANANMTIMLIGNKCDLAH 79
+ A +++ NK DL +
Sbjct: 98 ELRDA----VLLVFANKQDLPN 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 51 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 104 HRIINDREMRDAIILIFANKQDLP 127
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 40 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 92
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 93 HRIINDREMRDAIILIFANKQDLP 116
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 41 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 93
Query: 63 N--------ANMTIMLIGNKCDLA 78
+ + I++ NK DL
Sbjct: 94 HRIINDREMRDAIILIFANKQDLP 117
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
+ I +P L + DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 VMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61 HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
H +L+G + DL ++ ++ E E+ A++ + ++E SA T
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
+ ++ F
Sbjct: 163 KGLKNVF 169
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLED 57
IT N IKL WD GQ FRS+ Y RG + + + D +E N L + L+
Sbjct: 62 ITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119
Query: 58 ARQHANANMTIMLIGNKCDLA 78
+ + ++++GNK DL
Sbjct: 120 PQLQG---IPVLVLGNKRDLP 137
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLAS 53
I I+N + +WD GQES RS +YY ++V D +TR E + LA
Sbjct: 60 IVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 117
Query: 54 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 93
ED R+ +++ NK D+ + ++ E QF K
Sbjct: 118 --EDLRKAG-----LLIFANKQDV--KECMTVAEISQFLK 148
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLAS 53
I I+N + +WD GQES RS +YY ++V D +TR E + LA
Sbjct: 55 IVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 54 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 93
ED R+ +++ NK D+ + ++ E QF K
Sbjct: 113 --EDLRKAG-----LLIFANKQDV--KECMTVAEISQFLK 143
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLAS 53
I I+N + +WD GQES RS +YY ++V D +TR E + LA
Sbjct: 55 IVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 54 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 93
ED R+ +++ NK D+ + ++ E QF K
Sbjct: 113 --EDLRKAG-----LLIFANKQDV--KECMTVAEISQFLK 143
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLED 57
IT N IKL WD GQ FRS+ Y RG + + + D +E N L + L+
Sbjct: 71 ITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 128
Query: 58 ARQHANANMTIMLIGNKCDLA 78
+ + ++++GNK DL
Sbjct: 129 PQLQG---IPVLVLGNKRDLP 146
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLAS 53
I I+N + +WD GQES RS +YY ++V D +TR E + LA
Sbjct: 61 IVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 118
Query: 54 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 93
ED R+ +++ NK D+ + ++ E QF K
Sbjct: 119 --EDLRKAG-----LLIFANKQDV--KECMTVAEISQFLK 149
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T++ K I +WD GQ+ R + R YY+ + V D R+ L
Sbjct: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNED 114
Query: 63 NANMTIMLI-GNKCDLAHRRAVS 84
I+L+ NK DL ++S
Sbjct: 115 EMRNAILLVFANKHDLPQAMSIS 137
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
T+ K +KL +WD GQ S R R YY A + V D T ++
Sbjct: 56 TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
T++ K I +WD G + R + R Y++ G + V D RE N L ED
Sbjct: 40 TVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 99
Query: 58 ARQHANANMTIMLIGNKCDLAH 79
+ A +++ NK DL +
Sbjct: 100 ELRDA----VLLVFANKQDLPN 117
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 13 IWDTAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANA 64
+WD GQES RS +YY +LV D IT+ E + LA ED R+ A
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-- 119
Query: 65 NMTIMLIGNKCDL 77
+++ NK D+
Sbjct: 120 ---VLIFANKQDM 129
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
T++ K I +WD GQ+ R + R Y++ G + V D R+
Sbjct: 58 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
T+ K +K Q+WD GQ S R R YY + V D R+ S L +
Sbjct: 40 TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 99
Query: 63 NANMTIMLI-GNKCDLAH 79
I+++ NK D+
Sbjct: 100 ELRKAILVVFANKQDMEQ 117
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIM 69
L +WD AG+E F S + A L VYD+++ + + WL + + A+++ ++
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVI 114
Query: 70 LIGNKCDLA---HRRAVSTEEGEQFAKEHGL 97
L+G D++ R+A ++ ++ + G
Sbjct: 115 LVGTHLDVSDEKQRKACXSKITKELLNKRGF 145
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
I +WD GQ+ RS+ R YY G + V D R
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIM 69
L +WD AG+E F S + A L VYD+++ + + WL + + A+++ ++
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVI 116
Query: 70 LIGNKCDLA---HRRAVSTEEGEQFAKEHGL 97
L+G D++ R+A ++ ++ + G
Sbjct: 117 LVGTHLDVSDEKQRKACXSKITKELLNKRGF 147
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
T+ K +K Q+WD G S R R YY + V D R+
Sbjct: 42 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 85
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 48
++ ++ KL +WD GQ R RSY+ + V D R+ F
Sbjct: 55 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 48
++ ++ KL +WD GQ R RSY+ + V D R+ F
Sbjct: 42 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 48
++ ++ KL +WD GQ R RSY+ + V D R+ F
Sbjct: 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
T+ K +K Q+WD G S R R YY + V D R+
Sbjct: 45 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
T+ K I ++WD GQ R R Y+ + V D T R+
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 48
++ ++ KL +WD G R RSY+ + V D R+ F
Sbjct: 42 SVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--- 65
+ ++D +GQ +R++ YY+ + V D + R L+ H +
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126
Query: 66 MTIMLIGNKCDLAHRRAVSTEEGEQF 91
+ I+ NK DL R AV++ + Q
Sbjct: 127 IPILFFANKMDL--RDAVTSVKVSQL 150
>pdb|2CCM|A Chain A, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
pdb|2CCM|B Chain B, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
Length = 191
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 50 HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 109
+L SW D ++H A T+ LI + R+ E EQ KE +++ A+ ++
Sbjct: 44 NLHSWPTDGKKHNEARATLKLIWD----GLRKYADENEDEQVTKEE---WLKMWAECVKS 96
Query: 110 VEEAFIKTAATIYKKIQDGVFDVSNES 136
VE+ ++ K + +FDV++ S
Sbjct: 97 VEKG--ESLPEWLTKYMNFMFDVNDTS 121
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 56 EDARQHANANMTIMLIGNKCDLAHRRAVST---EEGEQFAKEHGLIFMEASAKTAQNVEE 112
E+ QH N+ ++ C+ A + VS +E + AK+HG+ + SA+ +N
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA-- 231
Query: 113 AFIKTAATIYKK--IQDGVFDV 132
FIK YK I++ +FD+
Sbjct: 232 YFIKARDPKYKNATIKEVIFDM 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,901,162
Number of Sequences: 62578
Number of extensions: 124799
Number of successful extensions: 779
Number of sequences better than 100.0: 338
Number of HSP's better than 100.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 338
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)