Query 031132
Match_columns 165
No_of_seqs 113 out of 1481
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.3E-33 7.1E-38 196.9 17.2 155 1-165 50-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.2E-32 2.7E-37 193.3 14.3 155 1-165 46-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 3.2E-31 7E-36 189.0 16.9 130 1-130 53-182 (207)
4 KOG0098 GTPase Rab2, small G p 100.0 4.6E-31 9.9E-36 184.4 16.4 139 1-139 47-185 (216)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.3E-30 5E-35 182.2 14.3 126 1-126 63-189 (221)
6 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.5E-30 7.6E-35 183.3 15.0 135 1-135 55-189 (222)
7 PLN03108 Rab family protein; P 100.0 6.2E-29 1.3E-33 182.5 20.7 163 2-164 48-210 (210)
8 KOG0086 GTPase Rab4, small G p 100.0 7.3E-30 1.6E-34 173.4 14.5 164 1-164 50-213 (214)
9 cd04120 Rab12 Rab12 subfamily. 100.0 3.2E-28 6.8E-33 177.6 19.6 124 2-125 42-166 (202)
10 KOG0091 GTPase Rab39, small G 100.0 5.3E-28 1.1E-32 165.9 16.7 157 5-165 54-213 (213)
11 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-27 3.8E-32 172.1 17.9 123 2-125 48-170 (189)
12 KOG0088 GTPase Rab21, small G 100.0 7.6E-28 1.6E-32 164.5 12.8 131 2-132 55-185 (218)
13 KOG0079 GTP-binding protein H- 100.0 7.9E-28 1.7E-32 162.6 12.8 124 1-125 49-172 (198)
14 cd04144 Ras2 Ras2 subfamily. 100.0 6.2E-27 1.3E-31 169.3 18.3 146 2-165 40-188 (190)
15 KOG0080 GTPase Rab18, small G 100.0 6E-28 1.3E-32 165.2 12.1 125 1-125 52-177 (209)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.1E-27 1.3E-31 170.7 17.9 154 2-164 42-201 (201)
17 cd04111 Rab39 Rab39 subfamily. 100.0 2.6E-26 5.7E-31 168.7 20.1 158 5-165 48-211 (211)
18 PLN03110 Rab GTPase; Provision 100.0 5.4E-26 1.2E-30 167.6 20.3 131 2-132 54-184 (216)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 5.7E-26 1.2E-30 168.7 19.6 125 2-127 54-193 (232)
20 KOG0081 GTPase Rab27, small G 99.9 1.6E-26 3.5E-31 158.1 13.5 151 6-163 64-216 (219)
21 KOG0394 Ras-related GTPase [Ge 99.9 2E-26 4.2E-31 161.0 14.1 126 2-127 51-183 (210)
22 PTZ00099 rab6; Provisional 99.9 7.6E-26 1.6E-30 161.9 17.5 122 2-123 22-143 (176)
23 KOG0093 GTPase Rab3, small G p 99.9 1.4E-26 3E-31 156.4 12.2 124 5-128 66-189 (193)
24 cd04110 Rab35 Rab35 subfamily. 99.9 2.6E-25 5.7E-30 161.9 19.0 127 2-129 48-174 (199)
25 cd04126 Rab20 Rab20 subfamily. 99.9 1.7E-25 3.6E-30 165.1 17.9 124 6-129 41-197 (220)
26 cd04112 Rab26 Rab26 subfamily. 99.9 2.7E-25 5.8E-30 160.8 18.7 124 2-125 43-166 (191)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.8E-25 3.9E-30 159.3 17.0 125 2-126 43-168 (172)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-25 2.3E-30 161.9 15.8 120 2-122 46-180 (182)
29 cd04125 RabA_like RabA-like su 99.9 4.8E-25 1E-29 159.0 19.1 128 2-129 42-169 (188)
30 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.7E-26 3.7E-31 153.9 10.1 126 2-127 40-165 (192)
31 cd01875 RhoG RhoG subfamily. 99.9 2.6E-25 5.6E-30 161.0 16.5 121 2-123 44-178 (191)
32 cd04122 Rab14 Rab14 subfamily. 99.9 4.5E-25 9.9E-30 155.9 16.9 122 2-123 44-165 (166)
33 cd04133 Rop_like Rop subfamily 99.9 2E-25 4.3E-30 159.7 15.1 120 2-122 42-173 (176)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.3E-24 2.8E-29 160.6 19.2 125 2-127 42-181 (222)
35 cd04109 Rab28 Rab28 subfamily. 99.9 8.5E-25 1.8E-29 161.0 18.1 118 7-124 48-168 (215)
36 KOG0097 GTPase Rab14, small G 99.9 5.4E-25 1.2E-29 148.2 15.5 139 1-139 52-190 (215)
37 cd04131 Rnd Rnd subfamily. Th 99.9 5.7E-25 1.2E-29 157.6 15.7 120 2-122 42-176 (178)
38 PTZ00369 Ras-like protein; Pro 99.9 1E-24 2.3E-29 157.5 17.0 126 2-127 46-172 (189)
39 KOG0095 GTPase Rab30, small G 99.9 2E-25 4.3E-30 151.4 10.5 126 1-126 48-173 (213)
40 cd01867 Rab8_Rab10_Rab13_like 99.9 4.1E-24 8.9E-29 151.3 17.0 122 2-123 45-166 (167)
41 cd04127 Rab27A Rab27a subfamil 99.9 3.2E-24 6.8E-29 153.3 16.2 119 6-124 60-179 (180)
42 smart00176 RAN Ran (Ras-relate 99.9 3.6E-24 7.8E-29 156.0 16.6 120 2-124 37-156 (200)
43 cd04118 Rab24 Rab24 subfamily. 99.9 8.6E-24 1.9E-28 152.9 18.5 125 2-127 43-171 (193)
44 cd04136 Rap_like Rap-like subf 99.9 2.6E-24 5.6E-29 151.1 15.2 120 2-121 42-162 (163)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.3E-24 1.2E-28 150.3 16.8 122 2-123 44-165 (166)
46 cd01865 Rab3 Rab3 subfamily. 99.9 5.9E-24 1.3E-28 150.2 16.7 121 3-123 44-164 (165)
47 cd04117 Rab15 Rab15 subfamily. 99.9 6.4E-24 1.4E-28 149.6 16.6 119 2-120 42-160 (161)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 4.8E-24 1E-28 150.3 15.8 121 2-122 42-163 (164)
49 cd01873 RhoBTB RhoBTB subfamil 99.9 3E-24 6.4E-29 156.0 14.9 115 3-120 60-194 (195)
50 PF00071 Ras: Ras family; Int 99.9 9.6E-24 2.1E-28 148.2 16.6 121 2-122 41-161 (162)
51 cd01874 Cdc42 Cdc42 subfamily. 99.9 6E-24 1.3E-28 151.9 14.9 119 2-121 42-174 (175)
52 PLN03118 Rab family protein; P 99.9 3.7E-23 7.9E-28 151.8 19.3 123 2-124 55-179 (211)
53 cd04132 Rho4_like Rho4-like su 99.9 1.9E-23 4.2E-28 150.2 17.4 122 6-128 46-173 (187)
54 cd04119 RJL RJL (RabJ-Like) su 99.9 2.2E-23 4.8E-28 146.7 16.7 121 2-122 42-167 (168)
55 cd04176 Rap2 Rap2 subgroup. T 99.9 1.3E-23 2.8E-28 147.8 15.3 120 2-121 42-162 (163)
56 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.7E-23 3.6E-28 150.5 15.8 121 2-123 42-167 (182)
57 cd01871 Rac1_like Rac1-like su 99.9 1.5E-23 3.3E-28 149.7 15.0 118 2-120 42-173 (174)
58 cd01868 Rab11_like Rab11-like. 99.9 4E-23 8.7E-28 145.6 16.8 120 2-121 45-164 (165)
59 cd04134 Rho3 Rho3 subfamily. 99.9 2E-23 4.3E-28 150.9 15.1 121 2-123 41-175 (189)
60 cd01866 Rab2 Rab2 subfamily. 99.9 6.1E-23 1.3E-27 145.4 17.3 122 2-123 46-167 (168)
61 smart00173 RAS Ras subfamily o 99.9 4.2E-23 9.2E-28 145.2 16.3 121 2-122 41-162 (164)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.2E-23 1.1E-27 144.6 16.3 120 2-121 43-163 (164)
63 smart00174 RHO Rho (Ras homolo 99.9 2.3E-23 5.1E-28 148.0 14.2 121 2-123 39-173 (174)
64 PLN03071 GTP-binding nuclear p 99.9 3.8E-23 8.2E-28 152.7 15.4 119 3-124 56-174 (219)
65 cd04113 Rab4 Rab4 subfamily. 99.9 6.9E-23 1.5E-27 143.8 16.0 120 2-121 42-161 (161)
66 smart00175 RAB Rab subfamily o 99.9 9.4E-23 2E-27 143.2 16.6 122 2-123 42-163 (164)
67 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.3E-22 2.7E-27 144.4 16.8 122 2-123 42-166 (170)
68 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.6E-22 3.5E-27 141.5 16.5 119 2-121 42-161 (162)
69 cd04124 RabL2 RabL2 subfamily. 99.9 1.4E-22 3.1E-27 142.6 16.0 119 2-124 42-160 (161)
70 cd04140 ARHI_like ARHI subfami 99.9 1.5E-22 3.3E-27 142.9 16.1 118 2-119 42-162 (165)
71 cd01864 Rab19 Rab19 subfamily. 99.9 1.7E-22 3.6E-27 142.6 16.2 119 2-120 45-164 (165)
72 cd04106 Rab23_lke Rab23-like s 99.9 1.8E-22 3.9E-27 141.7 15.9 114 6-120 48-161 (162)
73 cd04148 RGK RGK subfamily. Th 99.9 1.7E-22 3.6E-27 149.5 16.1 126 2-129 43-170 (221)
74 cd00877 Ran Ran (Ras-related n 99.9 1.9E-22 4.2E-27 142.8 15.7 118 3-123 43-160 (166)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.3E-22 4.9E-27 142.8 15.8 120 2-121 44-168 (170)
76 cd04116 Rab9 Rab9 subfamily. 99.9 2.4E-22 5.2E-27 142.4 15.8 118 2-120 47-169 (170)
77 cd01860 Rab5_related Rab5-rela 99.9 5.3E-22 1.1E-26 139.4 16.8 120 2-121 43-162 (163)
78 cd01861 Rab6 Rab6 subfamily. 99.9 5.7E-22 1.2E-26 139.0 16.2 119 2-120 42-160 (161)
79 cd04177 RSR1 RSR1 subgroup. R 99.9 5.3E-22 1.2E-26 140.5 16.0 121 2-122 42-164 (168)
80 cd04103 Centaurin_gamma Centau 99.9 2.8E-22 6.1E-27 141.0 14.4 114 2-120 40-157 (158)
81 cd04123 Rab21 Rab21 subfamily. 99.9 8.7E-22 1.9E-26 137.7 16.4 120 2-121 42-161 (162)
82 cd04146 RERG_RasL11_like RERG/ 99.9 7.3E-22 1.6E-26 139.3 15.5 121 2-122 40-164 (165)
83 cd04101 RabL4 RabL4 (Rab-like4 99.9 6.8E-22 1.5E-26 139.1 15.3 115 6-121 49-163 (164)
84 cd04130 Wrch_1 Wrch-1 subfamil 99.9 7E-22 1.5E-26 140.6 14.7 117 2-119 41-171 (173)
85 cd04143 Rhes_like Rhes_like su 99.9 1.4E-21 3.1E-26 146.6 16.3 121 2-122 41-171 (247)
86 KOG0395 Ras-related GTPase [Ge 99.9 2.7E-21 5.8E-26 140.3 17.0 125 2-126 44-169 (196)
87 PLN00223 ADP-ribosylation fact 99.9 7E-22 1.5E-26 142.0 13.6 119 4-124 56-180 (181)
88 cd04142 RRP22 RRP22 subfamily. 99.9 1.7E-21 3.7E-26 141.8 15.3 124 2-125 42-177 (198)
89 cd01862 Rab7 Rab7 subfamily. 99.9 6.4E-21 1.4E-25 134.9 17.1 124 2-125 42-170 (172)
90 cd04139 RalA_RalB RalA/RalB su 99.9 5.2E-21 1.1E-25 134.2 16.4 121 2-122 41-162 (164)
91 cd04114 Rab30 Rab30 subfamily. 99.9 5.1E-21 1.1E-25 135.2 16.5 120 2-121 49-168 (169)
92 cd01863 Rab18 Rab18 subfamily. 99.9 4.5E-21 9.8E-26 134.5 16.0 118 2-120 42-160 (161)
93 KOG0393 Ras-related small GTPa 99.9 5.7E-22 1.2E-26 142.0 11.3 124 2-126 45-183 (198)
94 cd04149 Arf6 Arf6 subfamily. 99.9 1.3E-21 2.7E-26 139.0 12.4 114 4-119 48-167 (168)
95 cd04135 Tc10 TC10 subfamily. 99.9 3.4E-21 7.3E-26 136.8 14.3 119 2-121 41-173 (174)
96 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 7.3E-22 1.6E-26 139.6 9.3 117 2-119 37-163 (164)
97 cd04158 ARD1 ARD1 subfamily. 99.9 4.4E-21 9.5E-26 136.1 13.1 118 4-123 38-162 (169)
98 smart00177 ARF ARF-like small 99.9 1.1E-21 2.5E-26 140.0 9.9 115 5-121 53-173 (175)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.9 5.7E-21 1.2E-25 134.4 12.9 114 4-119 39-158 (159)
100 cd04137 RheB Rheb (Ras Homolog 99.9 4.7E-20 1E-24 131.8 17.8 125 2-126 42-167 (180)
101 cd04147 Ras_dva Ras-dva subfam 99.9 2.4E-20 5.1E-25 135.7 16.4 121 2-122 40-163 (198)
102 cd01892 Miro2 Miro2 subfamily. 99.9 5.5E-21 1.2E-25 135.8 12.5 119 2-122 47-166 (169)
103 cd00876 Ras Ras family. The R 99.9 3.5E-20 7.5E-25 129.3 15.9 120 2-121 40-160 (160)
104 PTZ00133 ADP-ribosylation fact 99.9 1.5E-20 3.3E-25 135.1 14.2 119 4-124 56-180 (182)
105 cd00154 Rab Rab family. Rab G 99.9 3.5E-20 7.5E-25 128.6 15.5 117 2-118 42-158 (159)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.3E-20 5E-25 134.1 14.8 121 5-127 48-175 (183)
107 cd01870 RhoA_like RhoA-like su 99.8 9.7E-20 2.1E-24 129.4 15.7 119 2-121 42-174 (175)
108 cd04129 Rho2 Rho2 subfamily. 99.8 1.2E-19 2.6E-24 130.8 15.5 121 2-123 42-174 (187)
109 cd04154 Arl2 Arl2 subfamily. 99.8 4.7E-20 1E-24 131.2 12.8 110 8-119 57-172 (173)
110 cd01893 Miro1 Miro1 subfamily. 99.8 2.7E-19 5.9E-24 126.4 14.5 120 3-123 41-165 (166)
111 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.5E-20 9.7E-25 130.8 10.4 113 5-119 39-166 (167)
112 cd04157 Arl6 Arl6 subfamily. 99.8 1.2E-19 2.6E-24 127.2 12.2 113 5-119 41-161 (162)
113 cd04151 Arl1 Arl1 subfamily. 99.8 3.9E-20 8.4E-25 129.7 9.7 114 4-119 38-157 (158)
114 PF00025 Arf: ADP-ribosylation 99.8 1.2E-19 2.6E-24 129.7 12.2 113 7-121 56-175 (175)
115 cd00157 Rho Rho (Ras homology) 99.8 3.5E-19 7.6E-24 125.8 14.5 117 2-119 41-170 (171)
116 KOG0073 GTP-binding ADP-ribosy 99.8 4.1E-19 8.9E-24 122.2 14.0 121 3-125 54-181 (185)
117 KOG0070 GTP-binding ADP-ribosy 99.8 7.7E-20 1.7E-24 128.3 9.9 119 3-123 55-179 (181)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.1E-19 6.7E-24 127.2 12.9 112 6-119 56-173 (174)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.4E-19 7.4E-24 125.6 12.3 111 7-119 48-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.3E-19 7.2E-24 124.8 10.9 111 7-119 42-159 (160)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.6E-19 7.9E-24 124.5 10.2 111 7-119 41-157 (158)
122 KOG4252 GTP-binding protein [S 99.8 2E-20 4.3E-25 130.6 3.1 126 3-129 63-188 (246)
123 cd00879 Sar1 Sar1 subfamily. 99.8 1.7E-18 3.7E-23 124.8 12.5 111 8-120 62-189 (190)
124 smart00178 SAR Sar1p-like memb 99.8 2.3E-18 5E-23 123.9 12.5 112 7-120 59-183 (184)
125 cd01890 LepA LepA subfamily. 99.8 3.5E-18 7.6E-23 121.8 13.0 111 5-121 63-176 (179)
126 PTZ00132 GTP-binding nuclear p 99.8 1.5E-17 3.2E-22 122.4 15.9 118 4-124 53-170 (215)
127 cd04102 RabL3 RabL3 (Rab-like3 99.8 5.1E-18 1.1E-22 123.8 13.2 104 5-108 50-176 (202)
128 KOG0071 GTP-binding ADP-ribosy 99.8 1.7E-17 3.7E-22 111.6 11.2 116 4-121 56-177 (180)
129 KOG0075 GTP-binding ADP-ribosy 99.7 6.3E-18 1.4E-22 114.5 8.2 118 3-122 59-182 (186)
130 cd04159 Arl10_like Arl10-like 99.7 4.2E-17 9E-22 113.2 11.8 111 7-119 42-158 (159)
131 KOG3883 Ras family small GTPas 99.7 5.4E-17 1.2E-21 110.7 11.4 126 8-133 59-186 (198)
132 PLN00023 GTP-binding protein; 99.7 2.7E-16 5.9E-21 121.0 14.3 121 6-126 80-234 (334)
133 cd01897 NOG NOG1 is a nucleola 99.7 1.5E-16 3.2E-21 112.3 11.4 112 7-121 45-167 (168)
134 cd04155 Arl3 Arl3 subfamily. 99.7 3.7E-16 8E-21 110.8 13.0 107 8-119 57-172 (173)
135 KOG0076 GTP-binding ADP-ribosy 99.7 8E-17 1.7E-21 111.9 8.6 115 8-124 68-189 (197)
136 PRK12299 obgE GTPase CgtA; Rev 99.7 6.6E-16 1.4E-20 120.5 13.7 115 9-123 206-329 (335)
137 cd01898 Obg Obg subfamily. Th 99.7 3.5E-16 7.7E-21 110.4 10.6 111 9-120 48-169 (170)
138 cd00882 Ras_like_GTPase Ras-li 99.7 4.4E-15 9.5E-20 101.3 14.7 115 4-118 40-156 (157)
139 cd04171 SelB SelB subfamily. 99.7 1.6E-15 3.4E-20 106.2 12.2 109 8-119 50-163 (164)
140 cd01879 FeoB Ferrous iron tran 99.7 2.4E-15 5.1E-20 104.8 12.3 105 9-120 43-155 (158)
141 KOG0072 GTP-binding ADP-ribosy 99.7 2.9E-16 6.4E-21 106.1 7.2 119 4-124 57-181 (182)
142 cd01891 TypA_BipA TypA (tyrosi 99.7 1.2E-15 2.6E-20 110.6 10.5 107 3-113 59-173 (194)
143 TIGR02528 EutP ethanolamine ut 99.6 1.8E-15 3.8E-20 104.1 9.5 98 12-118 38-141 (142)
144 TIGR01393 lepA GTP-binding pro 99.6 4.6E-15 1E-19 123.5 13.5 112 5-122 66-180 (595)
145 cd01878 HflX HflX subfamily. 99.6 4E-15 8.6E-20 108.5 10.8 106 10-121 90-204 (204)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 7.1E-15 1.5E-19 103.4 11.2 111 8-122 49-166 (168)
147 KOG1673 Ras GTPases [General f 99.6 6E-15 1.3E-19 101.0 10.0 122 1-123 61-187 (205)
148 TIGR00231 small_GTP small GTP- 99.6 2.1E-14 4.5E-19 99.0 12.9 116 2-118 43-160 (161)
149 TIGR02729 Obg_CgtA Obg family 99.6 1.4E-14 2.9E-19 113.0 12.6 112 9-121 205-328 (329)
150 cd01881 Obg_like The Obg-like 99.6 6.4E-15 1.4E-19 104.3 9.6 113 8-120 43-175 (176)
151 cd01888 eIF2_gamma eIF2-gamma 99.6 8E-15 1.7E-19 107.1 10.2 111 9-121 83-198 (203)
152 KOG4423 GTP-binding protein-li 99.6 4.4E-16 9.5E-21 109.5 2.9 120 8-127 74-199 (229)
153 COG1100 GTPase SAR1 and relate 99.6 9.7E-14 2.1E-18 102.0 14.8 122 6-127 51-190 (219)
154 PRK05433 GTP-binding protein L 99.6 3.1E-14 6.7E-19 118.7 13.5 113 5-123 70-185 (600)
155 PRK15467 ethanolamine utilizat 99.6 3E-14 6.4E-19 100.2 10.5 104 13-126 41-151 (158)
156 cd01894 EngA1 EngA1 subfamily. 99.6 2.9E-14 6.3E-19 99.0 10.2 103 9-120 45-156 (157)
157 cd00881 GTP_translation_factor 99.6 7E-14 1.5E-18 100.0 11.7 110 8-121 61-186 (189)
158 COG2229 Predicted GTPase [Gene 99.6 1.2E-13 2.7E-18 97.1 12.2 107 9-120 68-176 (187)
159 KOG0074 GTP-binding ADP-ribosy 99.6 1.1E-14 2.4E-19 98.3 6.4 111 9-119 62-176 (185)
160 PRK04213 GTP-binding protein; 99.6 6.8E-14 1.5E-18 101.7 11.0 107 10-123 53-193 (201)
161 cd01889 SelB_euk SelB subfamil 99.5 6.3E-14 1.4E-18 101.3 10.7 114 6-123 65-187 (192)
162 TIGR03156 GTP_HflX GTP-binding 99.5 1.5E-13 3.3E-18 107.9 13.3 105 9-120 237-350 (351)
163 PRK03003 GTP-binding protein D 99.5 7.4E-14 1.6E-18 113.8 9.7 105 10-123 87-200 (472)
164 TIGR00157 ribosome small subun 99.5 1E-13 2.2E-18 104.1 9.5 95 20-118 24-119 (245)
165 PRK12297 obgE GTPase CgtA; Rev 99.5 6.7E-13 1.4E-17 106.3 14.5 112 8-123 205-328 (424)
166 PRK03003 GTP-binding protein D 99.5 2.3E-13 4.9E-18 111.0 12.0 114 3-122 255-382 (472)
167 TIGR00450 mnmE_trmE_thdF tRNA 99.5 2.1E-13 4.5E-18 110.1 11.3 105 9-125 251-363 (442)
168 PRK15494 era GTPase Era; Provi 99.5 3.2E-13 6.9E-18 105.8 11.9 105 9-121 100-215 (339)
169 TIGR00436 era GTP-binding prot 99.5 2.9E-13 6.4E-18 102.9 11.1 107 9-121 48-163 (270)
170 TIGR00487 IF-2 translation ini 99.5 4.1E-13 8.9E-18 111.6 12.5 103 10-119 136-247 (587)
171 CHL00189 infB translation init 99.5 5.5E-13 1.2E-17 112.7 13.2 109 6-121 292-409 (742)
172 PRK05291 trmE tRNA modificatio 99.5 1.5E-13 3.2E-18 111.3 9.2 101 9-123 263-371 (449)
173 cd04164 trmE TrmE (MnmE, ThdF, 99.5 4.4E-13 9.6E-18 92.9 10.4 101 8-121 48-156 (157)
174 TIGR00437 feoB ferrous iron tr 99.5 3.2E-13 7E-18 112.5 10.2 106 9-121 41-154 (591)
175 TIGR03594 GTPase_EngA ribosome 99.5 7.7E-13 1.7E-17 106.6 11.9 109 10-123 221-345 (429)
176 PRK05306 infB translation init 99.5 7.4E-13 1.6E-17 112.8 11.7 105 9-120 337-450 (787)
177 PRK12296 obgE GTPase CgtA; Rev 99.5 1.6E-12 3.4E-17 105.7 12.7 117 8-125 205-343 (500)
178 TIGR00491 aIF-2 translation in 99.5 2E-12 4.4E-17 107.4 13.6 106 10-122 70-216 (590)
179 PRK00093 GTP-binding protein D 99.4 1.7E-12 3.6E-17 104.9 12.6 100 9-119 49-159 (435)
180 TIGR00475 selB selenocysteine- 99.4 1.6E-12 3.5E-17 108.2 12.7 108 9-123 50-167 (581)
181 PF00009 GTP_EFTU: Elongation 99.4 1.8E-12 4E-17 93.5 11.4 112 6-121 67-186 (188)
182 PF08477 Miro: Miro-like prote 99.4 8.1E-13 1.8E-17 88.1 8.8 73 3-76 44-119 (119)
183 PRK11058 GTPase HflX; Provisio 99.4 2.9E-12 6.2E-17 103.0 13.4 109 10-123 246-363 (426)
184 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 1.3E-13 2.8E-18 97.3 4.6 114 7-123 57-170 (216)
185 cd00880 Era_like Era (E. coli 99.4 1.4E-12 3.1E-17 89.8 9.5 109 8-120 44-162 (163)
186 TIGR00483 EF-1_alpha translati 99.4 1E-12 2.2E-17 106.0 9.9 109 4-114 80-199 (426)
187 TIGR01394 TypA_BipA GTP-bindin 99.4 1.4E-12 3E-17 108.6 10.5 116 3-122 58-191 (594)
188 TIGR03680 eif2g_arch translati 99.4 1.7E-12 3.7E-17 104.0 10.5 112 8-121 79-195 (406)
189 TIGR03594 GTPase_EngA ribosome 99.4 2.6E-12 5.6E-17 103.5 11.0 103 9-122 47-160 (429)
190 cd00066 G-alpha G protein alph 99.4 4.1E-12 8.8E-17 98.8 11.3 124 3-126 155-315 (317)
191 PRK04000 translation initiatio 99.4 2.7E-12 5.9E-17 103.0 10.3 111 9-121 85-200 (411)
192 PRK12298 obgE GTPase CgtA; Rev 99.4 1.1E-11 2.5E-16 98.6 13.0 113 10-123 208-334 (390)
193 cd04163 Era Era subfamily. Er 99.4 6.9E-12 1.5E-16 87.3 10.2 110 7-120 49-167 (168)
194 cd01883 EF1_alpha Eukaryotic e 99.4 2.5E-12 5.4E-17 95.0 8.1 107 3-111 71-194 (219)
195 PRK10218 GTP-binding protein; 99.4 9E-12 1.9E-16 103.9 12.0 116 3-122 62-195 (607)
196 cd01895 EngA2 EngA2 subfamily. 99.4 2.2E-11 4.7E-16 85.5 12.4 106 10-119 51-172 (174)
197 PRK12317 elongation factor 1-a 99.4 3.6E-12 7.8E-17 102.8 9.3 110 4-115 79-198 (425)
198 cd04166 CysN_ATPS CysN_ATPS su 99.3 9.3E-12 2E-16 91.3 9.9 105 6-113 74-185 (208)
199 smart00275 G_alpha G protein a 99.3 1.5E-11 3.2E-16 96.5 11.6 124 4-127 179-339 (342)
200 PRK00089 era GTPase Era; Revie 99.3 1.1E-11 2.4E-16 95.2 10.7 110 8-121 52-170 (292)
201 COG0481 LepA Membrane GTPase L 99.3 1.5E-11 3.3E-16 97.8 10.8 112 5-123 72-187 (603)
202 PRK00454 engB GTP-binding prot 99.3 3E-11 6.5E-16 87.2 10.9 109 9-121 70-193 (196)
203 PRK09518 bifunctional cytidyla 99.3 1.9E-11 4.1E-16 104.2 11.3 106 9-123 323-437 (712)
204 PF02421 FeoB_N: Ferrous iron 99.3 1.7E-11 3.7E-16 85.7 8.9 102 9-117 47-156 (156)
205 KOG0462 Elongation factor-type 99.3 3.3E-11 7.1E-16 97.2 11.5 113 5-124 121-237 (650)
206 PRK04004 translation initiatio 99.3 6.8E-11 1.5E-15 98.6 13.5 104 11-121 73-217 (586)
207 cd04105 SR_beta Signal recogni 99.3 3.2E-11 6.9E-16 88.2 10.1 73 7-79 46-123 (203)
208 cd04167 Snu114p Snu114p subfam 99.3 3E-11 6.4E-16 88.8 9.4 70 5-78 67-136 (213)
209 cd04168 TetM_like Tet(M)-like 99.3 1.1E-10 2.4E-15 87.3 12.4 72 3-78 58-129 (237)
210 PRK00093 GTP-binding protein D 99.3 4.5E-11 9.7E-16 96.6 11.0 109 9-122 221-344 (435)
211 PRK10512 selenocysteinyl-tRNA- 99.3 6.4E-11 1.4E-15 99.2 12.1 108 10-121 52-165 (614)
212 COG0532 InfB Translation initi 99.3 1.4E-10 3E-15 93.5 13.0 108 10-124 56-172 (509)
213 PRK09518 bifunctional cytidyla 99.3 1.3E-10 2.8E-15 99.2 13.3 113 3-123 494-622 (712)
214 TIGR03598 GTPase_YsxC ribosome 99.2 4.3E-11 9.4E-16 85.6 8.4 98 10-111 65-179 (179)
215 PRK09554 feoB ferrous iron tra 99.2 1.5E-10 3.3E-15 99.0 12.5 111 4-121 45-167 (772)
216 PRK14845 translation initiatio 99.2 3.7E-10 7.9E-15 98.7 14.9 105 11-122 528-673 (1049)
217 cd01884 EF_Tu EF-Tu subfamily. 99.2 3.4E-10 7.3E-15 82.3 11.8 104 4-111 60-172 (195)
218 cd01896 DRG The developmentall 99.2 5.1E-10 1.1E-14 83.5 12.2 107 8-121 46-225 (233)
219 cd04165 GTPBP1_like GTPBP1-lik 99.2 6.8E-10 1.5E-14 82.3 12.0 107 8-118 83-219 (224)
220 COG1160 Predicted GTPases [Gen 99.2 4.9E-10 1.1E-14 89.1 11.6 103 9-122 51-165 (444)
221 cd01859 MJ1464 MJ1464. This f 99.2 1.6E-10 3.4E-15 80.9 7.5 95 22-122 2-96 (156)
222 cd01855 YqeH YqeH. YqeH is an 99.1 5.4E-10 1.2E-14 80.7 9.9 93 22-121 24-124 (190)
223 cd01885 EF2 EF2 (for archaea a 99.1 5.2E-10 1.1E-14 82.8 9.5 69 6-78 70-138 (222)
224 TIGR00485 EF-Tu translation el 99.1 8.5E-10 1.9E-14 88.2 11.4 102 3-108 69-179 (394)
225 PRK12736 elongation factor Tu; 99.1 1E-09 2.2E-14 87.8 11.7 101 4-108 70-179 (394)
226 COG1159 Era GTPase [General fu 99.1 7.9E-10 1.7E-14 83.7 10.3 110 8-121 53-171 (298)
227 KOG1145 Mitochondrial translat 99.1 1.1E-09 2.4E-14 88.6 11.7 108 9-123 201-317 (683)
228 PRK00741 prfC peptide chain re 99.1 1.7E-09 3.8E-14 89.2 12.3 72 3-78 73-144 (526)
229 cd01876 YihA_EngB The YihA (En 99.1 1.2E-09 2.6E-14 76.1 9.9 105 10-120 46-169 (170)
230 PLN00043 elongation factor 1-a 99.1 6.3E-10 1.4E-14 90.2 9.5 105 4-112 80-203 (447)
231 cd04169 RF3 RF3 subfamily. Pe 99.1 2.2E-09 4.7E-14 81.6 11.3 73 3-79 65-137 (267)
232 PRK09866 hypothetical protein; 99.1 3.4E-09 7.4E-14 88.0 13.0 109 9-119 230-350 (741)
233 PRK12289 GTPase RsgA; Reviewed 99.1 6.8E-10 1.5E-14 87.3 8.3 92 23-119 80-172 (352)
234 PTZ00327 eukaryotic translatio 99.1 1.6E-09 3.6E-14 87.9 10.7 111 9-121 117-232 (460)
235 PRK13768 GTPase; Provisional 99.0 1.9E-09 4.2E-14 81.3 9.7 111 10-121 98-246 (253)
236 PF10662 PduV-EutP: Ethanolami 99.0 2.8E-09 6.1E-14 73.2 9.5 99 12-118 39-142 (143)
237 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.3E-09 2.9E-14 83.6 8.6 86 28-118 74-160 (287)
238 COG0486 ThdF Predicted GTPase 99.0 2.7E-09 5.9E-14 85.1 10.0 112 3-124 259-378 (454)
239 KOG0082 G-protein alpha subuni 99.0 3.5E-09 7.6E-14 82.5 10.4 127 2-128 188-350 (354)
240 PRK12735 elongation factor Tu; 99.0 3.9E-09 8.5E-14 84.5 11.0 102 4-109 70-180 (396)
241 PRK13351 elongation factor G; 99.0 3E-09 6.4E-14 90.6 10.9 71 4-78 68-138 (687)
242 COG1160 Predicted GTPases [Gen 99.0 5.3E-09 1.2E-13 83.3 11.1 110 8-121 225-350 (444)
243 TIGR02034 CysN sulfate adenyly 99.0 3.5E-09 7.7E-14 85.0 10.1 105 5-112 76-187 (406)
244 KOG1707 Predicted Ras related/ 99.0 1.1E-09 2.3E-14 89.1 6.7 118 6-123 53-176 (625)
245 PRK12288 GTPase RsgA; Reviewed 99.0 3E-09 6.5E-14 83.6 8.7 87 30-119 118-205 (347)
246 PRK05124 cysN sulfate adenylyl 99.0 2.7E-09 5.8E-14 87.2 8.7 107 4-113 102-216 (474)
247 KOG1489 Predicted GTP-binding 99.0 9.4E-09 2E-13 78.5 10.4 107 11-120 246-365 (366)
248 cd01886 EF-G Elongation factor 99.0 3.5E-09 7.5E-14 80.6 8.2 72 4-79 59-130 (270)
249 PRK12740 elongation factor G; 99.0 1.2E-08 2.5E-13 86.8 12.1 71 4-78 55-125 (668)
250 PRK00098 GTPase RsgA; Reviewed 98.9 2.7E-09 5.8E-14 82.4 7.1 84 30-117 78-162 (298)
251 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 3.3E-09 7.1E-14 78.8 7.0 116 9-126 48-180 (232)
252 TIGR03597 GTPase_YqeH ribosome 98.9 8.4E-09 1.8E-13 81.6 9.8 95 19-120 50-151 (360)
253 CHL00071 tufA elongation facto 98.9 1.6E-08 3.4E-13 81.3 10.8 103 4-110 70-181 (409)
254 KOG0077 Vesicle coat complex C 98.9 6.4E-09 1.4E-13 72.3 7.2 111 7-119 62-190 (193)
255 COG2262 HflX GTPases [General 98.9 5.3E-08 1.2E-12 76.7 13.0 121 10-136 241-370 (411)
256 PRK05506 bifunctional sulfate 98.9 1.9E-08 4.1E-13 85.0 10.5 104 6-112 101-211 (632)
257 PTZ00141 elongation factor 1- 98.9 2.9E-08 6.2E-13 80.6 11.0 106 4-112 80-203 (446)
258 PRK00049 elongation factor Tu; 98.9 4.4E-08 9.6E-13 78.5 11.9 100 6-109 72-180 (396)
259 cd04170 EF-G_bact Elongation f 98.9 6.6E-09 1.4E-13 79.0 6.6 106 4-115 59-166 (268)
260 PLN03127 Elongation factor Tu; 98.8 5.6E-08 1.2E-12 78.9 11.2 113 4-120 119-250 (447)
261 PLN03126 Elongation factor Tu; 98.8 3.7E-08 7.9E-13 80.5 9.3 103 4-110 139-250 (478)
262 PF00503 G-alpha: G-protein al 98.8 2.9E-08 6.3E-13 79.3 8.6 115 7-121 234-389 (389)
263 cd01849 YlqF_related_GTPase Yl 98.8 3.3E-08 7.2E-13 69.1 7.8 84 34-122 1-85 (155)
264 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.3E-13 69.5 7.1 88 29-121 5-94 (157)
265 PRK12739 elongation factor G; 98.8 1.3E-07 2.9E-12 80.6 12.3 71 4-78 68-138 (691)
266 cd01899 Ygr210 Ygr210 subfamil 98.8 7.8E-08 1.7E-12 74.8 9.8 53 65-121 214-268 (318)
267 TIGR00503 prfC peptide chain r 98.8 6.1E-08 1.3E-12 80.1 9.5 74 2-79 73-146 (527)
268 TIGR00484 EF-G translation elo 98.7 8.1E-08 1.8E-12 81.9 10.4 72 4-79 70-141 (689)
269 PF09439 SRPRB: Signal recogni 98.7 7.5E-08 1.6E-12 68.9 8.0 70 10-79 50-126 (181)
270 KOG0099 G protein subunit Galp 98.7 8E-08 1.7E-12 71.8 8.3 123 3-125 196-372 (379)
271 COG1084 Predicted GTPase [Gene 98.7 2.1E-07 4.5E-12 71.5 10.1 120 4-127 210-341 (346)
272 TIGR03596 GTPase_YlqF ribosome 98.7 1.6E-07 3.4E-12 71.8 9.6 92 25-124 14-105 (276)
273 KOG1423 Ras-like GTPase ERA [C 98.7 1.2E-07 2.6E-12 72.2 8.4 113 7-122 118-271 (379)
274 COG1217 TypA Predicted membran 98.6 2.1E-07 4.6E-12 74.5 9.0 117 3-123 62-196 (603)
275 COG0536 Obg Predicted GTPase [ 98.6 6E-07 1.3E-11 69.4 10.9 117 10-126 208-337 (369)
276 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.5E-07 3.3E-12 64.8 7.0 76 28-109 7-84 (141)
277 cd04104 p47_IIGP_like p47 (47- 98.6 8.1E-07 1.7E-11 64.5 10.5 108 10-124 53-186 (197)
278 cd01856 YlqF YlqF. Proteins o 98.6 2.6E-07 5.6E-12 65.6 7.2 91 24-122 11-101 (171)
279 COG0370 FeoB Fe2+ transport sy 98.6 6E-07 1.3E-11 74.8 9.9 105 9-120 50-162 (653)
280 KOG1490 GTP-binding protein CR 98.5 5.3E-07 1.1E-11 72.8 9.0 129 3-132 209-351 (620)
281 COG5256 TEF1 Translation elong 98.5 4.7E-07 1E-11 71.5 8.4 109 3-113 79-202 (428)
282 COG0218 Predicted GTPase [Gene 98.5 1.4E-06 3.1E-11 62.8 10.2 105 11-122 72-197 (200)
283 PRK09563 rbgA GTPase YlqF; Rev 98.5 8E-07 1.7E-11 68.3 9.3 90 26-123 18-107 (287)
284 KOG0090 Signal recognition par 98.5 3.8E-06 8.2E-11 61.0 12.1 68 11-78 84-158 (238)
285 COG2895 CysN GTPases - Sulfate 98.5 9.2E-07 2E-11 68.7 9.3 102 8-112 85-193 (431)
286 COG1163 DRG Predicted GTPase [ 98.5 1.2E-06 2.6E-11 67.4 9.6 112 4-122 105-289 (365)
287 PRK01889 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 71.2 8.0 83 30-118 110-193 (356)
288 PRK13796 GTPase YqeH; Provisio 98.5 1.8E-06 3.8E-11 68.6 10.4 93 21-120 58-157 (365)
289 TIGR00101 ureG urease accessor 98.5 1.5E-06 3.3E-11 63.3 8.8 102 9-121 92-195 (199)
290 PF03029 ATP_bind_1: Conserved 98.5 3.7E-07 8E-12 68.3 5.6 112 10-121 92-236 (238)
291 KOG0085 G protein subunit Galp 98.4 2.4E-07 5.1E-12 68.3 4.2 125 3-127 193-354 (359)
292 TIGR00490 aEF-2 translation el 98.4 7.6E-07 1.6E-11 76.4 7.2 71 4-78 81-151 (720)
293 KOG1144 Translation initiation 98.4 2.2E-06 4.7E-11 72.1 9.5 112 10-128 541-693 (1064)
294 cd01850 CDC_Septin CDC/Septin. 98.4 1.7E-06 3.6E-11 66.2 8.1 99 3-105 57-185 (276)
295 COG5257 GCD11 Translation init 98.4 3.7E-06 7.9E-11 64.8 9.0 115 10-126 87-206 (415)
296 PRK00007 elongation factor G; 98.3 6E-06 1.3E-10 70.7 10.7 72 4-79 70-141 (693)
297 PRK09435 membrane ATPase/prote 98.3 6.5E-06 1.4E-10 64.4 9.7 114 7-131 147-269 (332)
298 KOG1191 Mitochondrial GTPase [ 98.3 1.9E-06 4.1E-11 69.4 6.7 123 4-127 311-455 (531)
299 TIGR00073 hypB hydrogenase acc 98.3 1E-05 2.2E-10 59.2 9.7 101 9-120 103-205 (207)
300 PRK07560 elongation factor EF- 98.3 1E-05 2.2E-10 69.7 11.0 70 5-78 83-152 (731)
301 COG1162 Predicted GTPases [Gen 98.3 6.8E-06 1.5E-10 63.0 8.6 94 22-118 69-163 (301)
302 COG4108 PrfC Peptide chain rel 98.3 5.3E-06 1.1E-10 66.2 8.1 92 2-100 74-166 (528)
303 COG4917 EutP Ethanolamine util 98.2 1.4E-05 3.1E-10 53.4 7.6 98 13-119 41-143 (148)
304 PRK09602 translation-associate 98.2 3.3E-05 7.2E-10 62.0 10.8 51 65-119 217-268 (396)
305 KOG1707 Predicted Ras related/ 98.1 1.8E-05 3.8E-10 65.1 8.9 115 6-125 471-586 (625)
306 COG3276 SelB Selenocysteine-sp 98.1 4E-05 8.7E-10 61.2 10.5 110 9-122 50-162 (447)
307 KOG1532 GTPase XAB1, interacts 98.1 8.5E-05 1.8E-09 56.3 11.7 114 8-123 115-265 (366)
308 COG3596 Predicted GTPase [Gene 98.1 7E-05 1.5E-09 56.6 10.1 115 4-122 84-222 (296)
309 TIGR00750 lao LAO/AO transport 98.0 1.7E-05 3.8E-10 61.3 6.9 105 7-122 125-238 (300)
310 PF06858 NOG1: Nucleolar GTP-b 98.0 2.5E-05 5.4E-10 45.0 5.5 44 32-76 13-58 (58)
311 KOG3886 GTP-binding protein [S 98.0 2.5E-05 5.5E-10 57.6 6.8 70 9-79 53-130 (295)
312 PLN00116 translation elongatio 98.0 2.4E-05 5.3E-10 68.3 7.5 68 7-78 96-163 (843)
313 PTZ00416 elongation factor 2; 98.0 2.2E-05 4.8E-10 68.5 7.2 67 8-78 91-157 (836)
314 KOG0458 Elongation factor 1 al 98.0 2.5E-05 5.5E-10 64.2 6.9 110 2-113 248-373 (603)
315 cd01852 AIG1 AIG1 (avrRpt2-ind 98.0 0.00021 4.6E-09 51.7 11.1 113 9-123 49-185 (196)
316 cd01882 BMS1 Bms1. Bms1 is an 97.9 0.00024 5.2E-09 52.7 11.3 96 7-109 81-183 (225)
317 PF01926 MMR_HSR1: 50S ribosom 97.9 0.00019 4E-09 47.4 9.6 63 4-74 44-116 (116)
318 KOG0705 GTPase-activating prot 97.9 7.4E-05 1.6E-09 61.3 8.8 124 2-130 70-197 (749)
319 KOG3905 Dynein light intermedi 97.9 0.00029 6.3E-09 54.7 11.2 115 9-123 100-291 (473)
320 KOG0461 Selenocysteine-specifi 97.9 0.00012 2.6E-09 57.2 8.7 115 5-123 66-194 (522)
321 COG0480 FusA Translation elong 97.8 0.00014 2.9E-09 62.2 9.2 71 4-78 70-141 (697)
322 smart00010 small_GTPase Small 97.8 0.00012 2.7E-09 48.3 7.3 77 25-111 39-115 (124)
323 KOG0468 U5 snRNP-specific prot 97.8 4.7E-05 1E-09 63.7 5.7 70 4-77 192-261 (971)
324 smart00053 DYNc Dynamin, GTPas 97.6 0.00041 9E-09 52.0 7.8 69 9-80 125-207 (240)
325 PF00350 Dynamin_N: Dynamin fa 97.6 0.00023 5E-09 49.9 5.8 63 10-75 102-168 (168)
326 COG5258 GTPBP1 GTPase [General 97.5 0.0021 4.6E-08 51.0 11.1 109 10-123 202-339 (527)
327 KOG3887 Predicted small GTPase 97.5 0.0013 2.8E-08 49.2 9.4 117 7-125 73-205 (347)
328 KOG0466 Translation initiation 97.5 0.00014 3E-09 56.0 3.8 111 10-122 126-241 (466)
329 PF05783 DLIC: Dynein light in 97.4 0.0038 8.3E-08 51.2 11.9 116 8-123 72-265 (472)
330 COG0050 TufB GTPases - transla 97.3 0.00099 2.1E-08 51.1 6.9 92 10-105 76-176 (394)
331 KOG1424 Predicted GTP-binding 97.3 0.00059 1.3E-08 55.7 6.0 80 20-106 163-244 (562)
332 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.0021 4.5E-08 49.9 8.4 72 8-79 85-167 (313)
333 cd03110 Fer4_NifH_child This p 97.2 0.0043 9.2E-08 44.1 9.1 85 7-100 91-175 (179)
334 TIGR02836 spore_IV_A stage IV 97.2 0.0047 1E-07 49.8 9.9 96 5-105 87-218 (492)
335 KOG0464 Elongation factor G [T 97.1 0.00041 9E-09 55.5 3.2 91 2-98 95-185 (753)
336 KOG2423 Nucleolar GTPase [Gene 97.1 0.0032 6.9E-08 50.3 7.8 116 24-153 202-320 (572)
337 PRK10463 hydrogenase nickel in 97.1 0.0013 2.8E-08 50.6 5.6 56 65-120 230-287 (290)
338 COG0378 HypB Ni2+-binding GTPa 97.0 0.0019 4.1E-08 46.6 5.1 79 34-121 119-200 (202)
339 KOG2484 GTPase [General functi 96.9 0.0045 9.8E-08 49.2 7.3 55 21-79 135-191 (435)
340 KOG0460 Mitochondrial translat 96.9 0.011 2.5E-07 46.3 8.9 94 13-109 121-225 (449)
341 COG1703 ArgK Putative periplas 96.8 0.017 3.8E-07 44.5 9.3 110 8-131 143-263 (323)
342 cd04178 Nucleostemin_like Nucl 96.8 0.0036 7.8E-08 44.6 5.3 42 34-79 1-44 (172)
343 PF04548 AIG1: AIG1 family; I 96.8 0.023 4.9E-07 41.8 9.7 115 4-122 46-186 (212)
344 PTZ00258 GTP-binding protein; 96.7 0.016 3.5E-07 46.5 9.1 43 66-108 221-266 (390)
345 cd01853 Toc34_like Toc34-like 96.6 0.013 2.9E-07 44.2 7.7 70 9-78 79-162 (249)
346 COG1161 Predicted GTPases [Gen 96.6 0.0087 1.9E-07 46.9 6.6 94 17-118 18-113 (322)
347 PF03308 ArgK: ArgK protein; 96.4 0.0023 5E-08 48.3 2.2 105 11-129 124-237 (266)
348 KOG1143 Predicted translation 96.3 0.023 4.9E-07 45.3 7.5 101 10-114 250-380 (591)
349 KOG0448 Mitofusin 1 GTPase, in 96.3 0.038 8.2E-07 46.9 9.0 92 11-106 208-310 (749)
350 KOG1954 Endocytosis/signaling 96.3 0.01 2.2E-07 47.1 5.2 67 10-79 148-225 (532)
351 PF11111 CENP-M: Centromere pr 96.2 0.076 1.6E-06 37.8 9.0 87 32-119 64-150 (176)
352 KOG0467 Translation elongation 96.0 0.018 4E-07 49.3 6.1 69 5-77 68-136 (887)
353 KOG0465 Mitochondrial elongati 96.0 0.049 1.1E-06 45.8 8.2 72 5-80 100-171 (721)
354 PF05049 IIGP: Interferon-indu 96.0 0.084 1.8E-06 42.2 9.2 106 10-121 87-217 (376)
355 KOG0410 Predicted GTP binding 95.8 0.02 4.3E-07 44.7 4.7 118 10-138 227-357 (410)
356 KOG1486 GTP-binding protein DR 95.7 0.19 4E-06 38.2 9.4 50 66-122 239-288 (364)
357 KOG0469 Elongation factor 2 [T 95.5 0.033 7.1E-07 46.0 5.5 81 5-89 94-175 (842)
358 TIGR00064 ftsY signal recognit 95.5 0.13 2.9E-06 39.3 8.5 98 8-117 154-263 (272)
359 PRK14974 cell division protein 95.3 0.22 4.8E-06 39.3 9.4 104 9-124 223-332 (336)
360 TIGR03348 VI_IcmF type VI secr 95.2 0.09 2E-06 48.1 7.9 69 11-79 163-257 (1169)
361 PRK09601 GTP-binding protein Y 95.2 0.3 6.5E-06 39.0 9.9 40 66-105 200-240 (364)
362 COG3640 CooC CO dehydrogenase 95.2 0.092 2E-06 39.3 6.5 77 9-98 134-212 (255)
363 COG0012 Predicted GTPase, prob 95.0 0.53 1.2E-05 37.5 10.6 39 66-105 207-247 (372)
364 PF14331 ImcF-related_N: ImcF- 95.0 0.073 1.6E-06 40.6 5.8 93 32-127 25-136 (266)
365 cd02038 FleN-like FleN is a me 94.9 0.15 3.2E-06 34.8 6.6 65 9-77 45-109 (139)
366 PHA02518 ParA-like protein; Pr 94.8 0.32 6.9E-06 35.1 8.6 67 8-77 76-145 (211)
367 KOG0447 Dynamin-like GTP bindi 94.6 0.67 1.4E-05 39.1 10.5 82 10-94 413-508 (980)
368 PRK10416 signal recognition pa 94.6 0.43 9.3E-06 37.4 9.1 106 7-124 195-312 (318)
369 cd02036 MinD Bacterial cell di 94.5 0.78 1.7E-05 32.0 9.7 84 10-100 64-147 (179)
370 KOG0463 GTP-binding protein GP 94.1 0.16 3.6E-06 40.6 5.9 123 10-141 220-372 (641)
371 KOG0459 Polypeptide release fa 94.0 0.062 1.3E-06 43.2 3.5 106 8-115 156-279 (501)
372 COG4963 CpaE Flp pilus assembl 93.9 0.72 1.6E-05 36.7 9.0 68 8-78 217-284 (366)
373 cd03111 CpaE_like This protein 93.8 0.56 1.2E-05 30.4 7.2 62 10-74 44-106 (106)
374 TIGR01425 SRP54_euk signal rec 93.7 0.72 1.6E-05 37.7 9.0 85 8-102 182-272 (429)
375 KOG2486 Predicted GTPase [Gene 93.0 0.1 2.3E-06 39.9 3.0 103 10-118 184-312 (320)
376 TIGR03371 cellulose_yhjQ cellu 92.7 1.9 4.1E-05 31.9 9.5 65 10-77 116-180 (246)
377 TIGR00993 3a0901s04IAP86 chlor 92.6 0.92 2E-05 39.2 8.3 71 9-79 166-250 (763)
378 TIGR00959 ffh signal recogniti 92.0 2.2 4.7E-05 35.0 9.6 86 8-103 182-273 (428)
379 COG1149 MinD superfamily P-loo 91.7 1.4 3E-05 33.7 7.6 79 10-100 165-243 (284)
380 PRK00771 signal recognition pa 91.4 2.3 5.1E-05 34.9 9.2 84 10-103 177-266 (437)
381 cd02117 NifH_like This family 91.0 2.9 6.4E-05 30.4 8.8 89 8-101 116-207 (212)
382 cd03112 CobW_like The function 91.0 0.86 1.9E-05 31.8 5.7 65 8-77 86-158 (158)
383 PRK13505 formate--tetrahydrofo 90.9 2.3 5E-05 35.8 8.7 69 49-122 359-429 (557)
384 PF00735 Septin: Septin; Inte 90.6 3.4 7.3E-05 31.8 9.0 94 4-102 58-181 (281)
385 cd03115 SRP The signal recogni 90.5 4 8.6E-05 28.5 8.8 84 8-101 82-171 (173)
386 cd02037 MRP-like MRP (Multiple 90.3 4.6 0.0001 28.2 9.2 89 7-100 66-162 (169)
387 TIGR01968 minD_bact septum sit 90.3 3.9 8.4E-05 30.4 9.1 65 8-77 111-175 (261)
388 KOG4273 Uncharacterized conser 89.7 0.64 1.4E-05 35.3 4.2 48 29-79 75-123 (418)
389 KOG0780 Signal recognition par 89.6 1.2 2.5E-05 36.0 5.7 52 5-56 180-237 (483)
390 PRK13185 chlL protochlorophyll 89.5 4.2 9.2E-05 30.7 8.8 67 8-76 117-185 (270)
391 PRK10867 signal recognition pa 89.4 5.6 0.00012 32.7 9.8 86 8-103 183-274 (433)
392 PRK12727 flagellar biosynthesi 89.4 6.6 0.00014 33.2 10.2 95 8-114 428-528 (559)
393 PF01656 CbiA: CobQ/CobB/MinD/ 89.1 1.7 3.6E-05 30.7 6.1 67 9-78 95-161 (195)
394 cd02042 ParA ParA and ParB of 88.7 3.4 7.4E-05 26.1 6.8 45 9-56 40-84 (104)
395 CHL00175 minD septum-site dete 88.5 5.8 0.00013 30.1 9.0 65 8-77 126-190 (281)
396 cd03114 ArgK-like The function 87.6 2.6 5.5E-05 29.1 6.0 58 8-76 91-148 (148)
397 cd02032 Bchl_like This family 87.2 6.7 0.00015 29.6 8.6 68 8-77 115-184 (267)
398 PRK13849 putative crown gall t 87.2 3.1 6.7E-05 31.0 6.6 67 7-76 82-151 (231)
399 cd01900 YchF YchF subfamily. 87.0 1.4 3.1E-05 33.8 4.7 34 10-43 63-103 (274)
400 COG3523 IcmF Type VI protein s 86.9 5.6 0.00012 36.7 9.0 69 11-79 176-270 (1188)
401 KOG0781 Signal recognition par 86.0 6.2 0.00013 32.9 8.0 108 7-117 465-585 (587)
402 KOG2485 Conserved ATP/GTP bind 85.9 4 8.6E-05 32.0 6.6 91 26-123 40-132 (335)
403 TIGR01007 eps_fam capsular exo 85.8 4.1 8.9E-05 29.3 6.5 67 8-78 127-193 (204)
404 COG0523 Putative GTPases (G3E 85.8 3.2 6.9E-05 32.7 6.2 89 9-104 85-184 (323)
405 PRK10818 cell division inhibit 85.4 6.9 0.00015 29.5 7.8 67 8-77 113-185 (270)
406 TIGR01969 minD_arch cell divis 85.0 4.2 9.2E-05 30.0 6.4 64 8-77 108-172 (251)
407 PF07015 VirC1: VirC1 protein; 84.9 7.9 0.00017 29.0 7.6 102 9-115 84-187 (231)
408 PRK05703 flhF flagellar biosyn 84.7 20 0.00044 29.3 10.7 105 9-125 300-412 (424)
409 PF03193 DUF258: Protein of un 83.6 3.1 6.8E-05 29.3 4.8 32 87-118 3-34 (161)
410 TIGR01281 DPOR_bchL light-inde 83.6 12 0.00026 28.2 8.4 68 8-77 115-184 (268)
411 PF00448 SRP54: SRP54-type pro 83.1 15 0.00033 26.6 9.3 92 9-112 84-181 (196)
412 PF10087 DUF2325: Uncharacteri 82.7 9.8 0.00021 24.1 7.3 20 26-45 42-61 (97)
413 COG5019 CDC3 Septin family pro 81.7 17 0.00038 29.1 8.7 99 5-109 78-206 (373)
414 KOG1547 Septin CDC10 and relat 81.6 12 0.00025 28.6 7.3 107 4-115 99-236 (336)
415 PF09547 Spore_IV_A: Stage IV 81.2 11 0.00024 31.1 7.6 68 33-105 146-218 (492)
416 COG0552 FtsY Signal recognitio 79.9 12 0.00027 29.5 7.3 93 7-113 220-326 (340)
417 cd02040 NifH NifH gene encodes 79.5 20 0.00044 26.8 8.4 66 8-74 116-184 (270)
418 KOG3929 Uncharacterized conser 79.0 1.8 4E-05 33.1 2.4 40 65-106 190-236 (363)
419 PRK11670 antiporter inner memb 78.1 34 0.00073 27.5 9.7 68 7-78 214-282 (369)
420 PRK06731 flhF flagellar biosyn 77.8 23 0.0005 27.2 8.2 92 8-111 154-251 (270)
421 PRK14723 flhF flagellar biosyn 76.2 41 0.00088 29.9 10.0 108 9-126 264-379 (767)
422 COG0541 Ffh Signal recognition 76.2 14 0.00031 30.3 6.8 64 9-78 183-252 (451)
423 PRK12726 flagellar biosynthesi 73.9 32 0.0007 28.0 8.3 91 9-111 286-382 (407)
424 CHL00072 chlL photochlorophyll 73.7 19 0.00042 27.7 6.9 68 8-77 115-184 (290)
425 cd02035 ArsA ArsA ATPase funct 73.5 19 0.00042 26.3 6.7 67 9-78 114-183 (217)
426 PRK11889 flhF flagellar biosyn 73.1 43 0.00093 27.6 8.8 90 9-110 321-416 (436)
427 PRK14722 flhF flagellar biosyn 72.2 50 0.0011 26.6 9.4 97 9-111 216-321 (374)
428 COG1010 CobJ Precorrin-3B meth 72.0 25 0.00055 26.5 6.8 47 29-75 151-197 (249)
429 COG1419 FlhF Flagellar GTP-bin 71.4 53 0.0012 26.8 9.0 91 8-110 281-377 (407)
430 PRK11537 putative GTP-binding 71.4 40 0.00086 26.5 8.3 86 9-103 91-186 (318)
431 TIGR02016 BchX chlorophyllide 71.2 46 0.00099 25.8 8.9 110 8-126 122-253 (296)
432 PRK12723 flagellar biosynthesi 69.8 58 0.0013 26.4 9.9 106 8-125 254-367 (388)
433 PF09419 PGP_phosphatase: Mito 68.5 40 0.00086 24.0 9.9 85 30-117 36-127 (168)
434 cd02033 BchX Chlorophyllide re 67.8 57 0.0012 25.8 8.4 110 8-126 147-277 (329)
435 PF03709 OKR_DC_1_N: Orn/Lys/A 67.5 32 0.00069 22.5 6.8 47 27-75 31-77 (115)
436 PRK06995 flhF flagellar biosyn 67.3 75 0.0016 26.7 10.1 105 10-126 336-447 (484)
437 KOG2655 Septin family protein 66.1 53 0.0011 26.5 7.9 95 5-104 75-199 (366)
438 TIGR03815 CpaE_hom_Actino heli 66.1 30 0.00065 26.9 6.7 62 8-75 204-265 (322)
439 PRK13507 formate--tetrahydrofo 65.7 52 0.0011 28.1 8.1 64 57-122 393-458 (587)
440 PF02492 cobW: CobW/HypB/UreG, 65.4 7.7 0.00017 27.4 3.0 65 10-79 86-155 (178)
441 KOG1487 GTP-binding protein DR 64.7 18 0.00039 28.0 4.8 75 32-122 206-281 (358)
442 cd00477 FTHFS Formyltetrahydro 64.4 53 0.0012 27.7 7.9 65 56-122 347-413 (524)
443 COG2759 MIS1 Formyltetrahydrof 63.9 58 0.0012 27.2 7.8 90 32-123 319-427 (554)
444 KOG1534 Putative transcription 63.9 27 0.00059 26.1 5.5 70 10-79 99-178 (273)
445 PF08438 MMR_HSR1_C: GTPase of 63.0 10 0.00022 24.9 2.9 31 71-105 1-32 (109)
446 PF05014 Nuc_deoxyrib_tr: Nucl 61.9 25 0.00053 22.8 4.7 43 28-77 57-101 (113)
447 PRK14721 flhF flagellar biosyn 61.1 92 0.002 25.6 10.0 107 9-127 270-383 (420)
448 TIGR02475 CobW cobalamin biosy 61.0 82 0.0018 25.0 8.3 36 9-44 93-135 (341)
449 PRK13232 nifH nitrogenase redu 59.7 73 0.0016 24.0 8.1 68 8-76 116-185 (273)
450 TIGR03029 EpsG chain length de 59.2 43 0.00094 25.2 6.3 51 8-60 212-262 (274)
451 TIGR03566 FMN_reduc_MsuE FMN r 59.2 18 0.0004 25.4 4.0 49 26-74 62-110 (174)
452 PRK13695 putative NTPase; Prov 58.7 59 0.0013 22.6 9.3 80 26-121 90-172 (174)
453 PF12694 MoCo_carrier: Putativ 57.3 62 0.0014 22.4 9.9 98 12-122 44-144 (145)
454 TIGR01287 nifH nitrogenase iro 57.2 81 0.0018 23.7 8.7 66 8-74 115-183 (275)
455 KOG3022 Predicted ATPase, nucl 57.0 32 0.00069 26.7 5.0 121 3-127 151-297 (300)
456 TIGR01005 eps_transp_fam exopo 55.7 43 0.00092 29.5 6.4 66 8-77 655-720 (754)
457 PRK13506 formate--tetrahydrofo 55.5 1E+02 0.0022 26.4 8.1 64 57-122 385-451 (578)
458 PF03358 FMN_red: NADPH-depend 53.9 66 0.0014 21.7 8.4 74 26-100 64-140 (152)
459 PRK10037 cell division protein 53.5 71 0.0015 23.7 6.6 36 7-44 116-151 (250)
460 cd04170 EF-G_bact Elongation f 53.5 21 0.00045 27.0 3.7 25 97-121 241-265 (268)
461 PRK12724 flagellar biosynthesi 53.2 1.3E+02 0.0028 24.9 8.3 86 8-103 299-393 (432)
462 TIGR00092 GTP-binding protein 52.6 21 0.00046 28.7 3.7 35 9-43 67-108 (368)
463 PLN02759 Formate--tetrahydrofo 52.2 72 0.0016 27.5 6.8 64 57-122 442-508 (637)
464 COG1908 FrhD Coenzyme F420-red 50.6 75 0.0016 21.4 9.6 59 67-125 56-125 (132)
465 COG5192 BMS1 GTP-binding prote 49.6 75 0.0016 27.6 6.5 70 3-79 107-177 (1077)
466 cd07393 MPP_DR1119 Deinococcus 49.5 45 0.00098 24.6 4.9 45 27-74 36-81 (232)
467 COG1512 Beta-propeller domains 49.3 1.2E+02 0.0026 23.4 10.7 96 32-132 63-168 (271)
468 cd01983 Fer4_NifH The Fer4_Nif 48.4 57 0.0012 19.4 7.1 35 11-45 36-71 (99)
469 PRK13705 plasmid-partitioning 48.0 1.5E+02 0.0032 24.0 8.2 67 8-77 234-306 (388)
470 PTZ00386 formyl tetrahydrofola 47.8 1.1E+02 0.0025 26.3 7.3 65 56-122 428-496 (625)
471 TIGR03567 FMN_reduc_SsuE FMN r 47.6 29 0.00062 24.3 3.4 50 26-75 59-108 (171)
472 PRK13660 hypothetical protein; 47.4 1.1E+02 0.0023 22.1 7.3 16 29-44 126-141 (182)
473 PRK10569 NAD(P)H-dependent FMN 46.2 31 0.00068 24.8 3.5 49 26-74 60-108 (191)
474 PF01268 FTHFS: Formate--tetra 45.7 17 0.00037 30.8 2.3 89 32-122 321-428 (557)
475 cd01851 GBP Guanylate-binding 45.4 62 0.0013 23.8 5.1 40 7-46 58-105 (224)
476 PRK13231 nitrogenase reductase 45.2 1.3E+02 0.0028 22.5 7.9 66 8-76 113-179 (264)
477 cd07388 MPP_Tt1561 Thermus the 42.9 1.4E+02 0.003 22.2 6.5 62 11-76 8-73 (224)
478 PRK13230 nitrogenase reductase 42.9 1.5E+02 0.0031 22.5 8.3 52 8-60 116-168 (279)
479 TIGR03018 pepcterm_TyrKin exop 41.8 1.3E+02 0.0028 21.6 6.7 47 10-58 150-196 (207)
480 TIGR03790 conserved hypothetic 41.8 1.5E+02 0.0033 23.4 6.7 57 68-129 3-64 (316)
481 PF12098 DUF3574: Protein of u 41.2 31 0.00068 22.4 2.5 32 11-42 38-69 (104)
482 cd06331 PBP1_AmiC_like Type I 40.8 1.4E+02 0.003 22.9 6.7 38 4-42 36-74 (333)
483 PHA02519 plasmid partition pro 40.7 2E+02 0.0042 23.3 8.5 68 8-78 234-307 (387)
484 cd04169 RF3 RF3 subfamily. Pe 40.6 27 0.00058 26.6 2.5 25 97-121 240-264 (267)
485 PF07764 Omega_Repress: Omega 40.6 27 0.00058 20.4 1.9 24 103-126 44-67 (71)
486 KOG1491 Predicted GTP-binding 40.1 46 0.001 26.7 3.7 36 8-43 83-125 (391)
487 TIGR03453 partition_RepA plasm 39.7 1.9E+02 0.0042 23.1 7.4 68 8-77 234-309 (387)
488 cd01886 EF-G Elongation factor 39.6 29 0.00063 26.5 2.6 25 97-121 243-267 (270)
489 PRK13233 nifH nitrogenase redu 39.5 1.2E+02 0.0027 22.7 6.1 67 8-75 118-187 (275)
490 KOG2743 Cobalamin synthesis pr 39.4 1.5E+02 0.0032 23.7 6.2 38 7-44 144-189 (391)
491 PRK13869 plasmid-partitioning 38.2 2.2E+02 0.0047 23.2 7.7 67 8-77 251-326 (405)
492 KOG0446 Vacuolar sorting prote 37.6 7.4 0.00016 33.7 -1.0 68 10-79 133-213 (657)
493 PRK13556 azoreductase; Provisi 36.6 1.6E+02 0.0035 21.2 8.5 46 28-73 85-143 (208)
494 cd02011 TPP_PK Thiamine pyroph 36.2 1.8E+02 0.004 21.7 8.6 82 30-114 76-163 (227)
495 TIGR00503 prfC peptide chain r 35.5 38 0.00082 28.7 2.8 28 97-124 250-277 (527)
496 KOG1249 Predicted GTPases [Gen 34.6 1E+02 0.0023 26.2 5.1 84 31-120 109-209 (572)
497 cd07379 MPP_239FB Homo sapiens 34.5 1.2E+02 0.0026 20.0 4.8 59 11-77 3-62 (135)
498 COG0455 flhG Antiactivator of 34.3 2.1E+02 0.0046 21.8 8.3 64 10-77 114-178 (262)
499 PF07894 DUF1669: Protein of u 33.7 1.2E+02 0.0025 23.6 5.0 54 19-78 132-187 (284)
500 cd08166 MPP_Cdc1_like_1 unchar 33.6 1.7E+02 0.0036 21.4 5.6 64 32-95 42-111 (195)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=196.89 Aligned_cols=155 Identities=45% Similarity=0.784 Sum_probs=134.8
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
++.++|+.+.+++|||+||++|+.+..+||++|+|||||||+++..||+.+..|+.++.++...++|.++|+||+|+.+.
T Consensus 50 t~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 50 TVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred EeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 46799999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQ 159 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
..++.++++.++..++++ ++++||+++.|++++|..|...+..+.............+.+.+ +++..+.
T Consensus 130 ~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~----------~~p~~~~ 199 (205)
T KOG0084|consen 130 RVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLK----------GTPVKKS 199 (205)
T ss_pred eecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeC----------CCCcccc
Confidence 999999999999999999 99999999999999999999999988877654443333333333 2233344
Q ss_pred CCCCCC
Q 031132 160 AGGCCS 165 (165)
Q Consensus 160 ~~~c~~ 165 (165)
..+||+
T Consensus 200 ~~~~C~ 205 (205)
T KOG0084|consen 200 NGGCCE 205 (205)
T ss_pred cCCCCC
Confidence 555885
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=193.30 Aligned_cols=155 Identities=39% Similarity=0.730 Sum_probs=134.7
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
++.++...+.|.+|||+||++|+++.++||++|+++|+|||+++..||..++.|+..+.....+++-+.|++||+||.+.
T Consensus 46 tv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 46 TVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred EEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 46788889999999999999999999999999999999999999999999999999998887666777889999999888
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQA 160 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
+++..++++.++...++.++|+||+++.|++++|..|.+.+...........++++.+.-.... + .+..+
T Consensus 126 R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~---------~-~~~~~ 195 (200)
T KOG0092|consen 126 REVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSN---------Q-EPARP 195 (200)
T ss_pred ccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccC---------C-CCcCc
Confidence 8999999999999999999999999999999999999999988777765544444444433322 1 56678
Q ss_pred CCCCC
Q 031132 161 GGCCS 165 (165)
Q Consensus 161 ~~c~~ 165 (165)
.+|||
T Consensus 196 ~~~C~ 200 (200)
T KOG0092|consen 196 SGCCA 200 (200)
T ss_pred CCcCC
Confidence 88997
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.2e-31 Score=188.99 Aligned_cols=130 Identities=52% Similarity=0.905 Sum_probs=123.8
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
++.++|..+.+++|||+||++|+.+...||++|+++++|||.++..||+.+..|+..+..+....+|.+||+||+|+...
T Consensus 53 ti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 53 TIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred EEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999998778999999999999988
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 130 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~ 130 (165)
++++.+.++.+|.++|+.++|+||++|.||+++|-.|.+.++++....+.
T Consensus 133 R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 133 RQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDAEL 182 (207)
T ss_pred ccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchhhh
Confidence 99999999999999999999999999999999999999999987666543
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.6e-31 Score=184.44 Aligned_cols=139 Identities=81% Similarity=1.191 Sum_probs=132.2
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.++||++.+.+++|||+|++.+++..+.||++|.++|+|||.+.+++|+.+..|+..+.++...+.-++|++||+||...
T Consensus 47 ~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 47 MVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred EEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 37899999999999999999999999999999999999999999999999999999999997788999999999999988
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI 139 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~ 139 (165)
+.++.+++..|++++++.++++||++++|++++|..+...|.+...++-+...+.+.+.
T Consensus 127 R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~k~k 185 (216)
T KOG0098|consen 127 REVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINESKGK 185 (216)
T ss_pred ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999888887777763
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=182.19 Aligned_cols=126 Identities=43% Similarity=0.735 Sum_probs=116.1
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCeEEEEeeCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 79 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~ 79 (165)
++.+.+..+++++|||+||++|+.+.+.|++++.++|+|||+++..||+....|+..++..... ++-+++|+||.||.+
T Consensus 63 t~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 63 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred EEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 4678899999999999999999999999999999999999999999999999999999887764 578899999999999
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
++++..++....+.+++..|+++||+.|+||+++|..|...+.....
T Consensus 143 krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 143 KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999997776666544
No 6
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-30 Score=183.29 Aligned_cols=135 Identities=54% Similarity=0.930 Sum_probs=127.2
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
++.++++.+..++|||+||++|+++...||++|-+.++|||.+...+|+.+..|+.+++.+...++++++|+||+||...
T Consensus 55 t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 55 TVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred ceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999889999999999999888
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 135 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~ 135 (165)
+.++.++++.+++..++.++++||..+.|++++|..++..|.+....+.......
T Consensus 135 raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 135 RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred cccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 8899999999999999999999999999999999999999999877776666555
No 7
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=6.2e-29 Score=182.47 Aligned_cols=163 Identities=97% Similarity=1.433 Sum_probs=150.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..++..+..|+..+........|+++++||+|+....
T Consensus 48 i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 127 (210)
T PLN03108 48 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (210)
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 46788889999999999999999999999999999999999999999999999988776654578999999999997766
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAG 161 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
.+..++...++..++++++++||+++.|++++|.++.+.++++..++.+...++.++..+.+++||..++++...+++-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (210)
T PLN03108 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGG 207 (210)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCC
Confidence 78888889999999999999999999999999999999999988888888888999999999999999999999999999
Q ss_pred CCC
Q 031132 162 GCC 164 (165)
Q Consensus 162 ~c~ 164 (165)
+||
T Consensus 208 ~~~ 210 (210)
T PLN03108 208 GCC 210 (210)
T ss_pred CCC
Confidence 999
No 8
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-30 Score=173.44 Aligned_cols=164 Identities=49% Similarity=0.783 Sum_probs=153.1
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
++.+.++.+.+++|||+||++|++..+.||++|-+.++|||++++++|+.+-+|+..++....+++-+++++||.||.+.
T Consensus 50 IinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 50 IVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred eeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 46788999999999999999999999999999999999999999999999999999998887778888999999999999
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQA 160 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
++++..+...++.+..+-++++||++|+|+++.|-.....|+.+.+.++++.+....|.+-+-+..+.+--|++++..-+
T Consensus 130 R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~ 209 (214)
T KOG0086|consen 130 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNP 209 (214)
T ss_pred hhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888877777777777
Q ss_pred CCCC
Q 031132 161 GGCC 164 (165)
Q Consensus 161 ~~c~ 164 (165)
..|-
T Consensus 210 ~~c~ 213 (214)
T KOG0086|consen 210 QPCG 213 (214)
T ss_pred CCCC
Confidence 8883
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=3.2e-28 Score=177.62 Aligned_cols=124 Identities=48% Similarity=0.818 Sum_probs=112.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+++|||+|+++|+.+|+.+++++|++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+
T Consensus 42 i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 42 VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 56788899999999999999999999999999999999999999999999999998876654679999999999997777
Q ss_pred CCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.+...+...++... ++.+++|||++|.|++++|.++.+.+.+..
T Consensus 122 ~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 122 EISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 78888888888775 788999999999999999999999887653
No 10
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=165.94 Aligned_cols=157 Identities=43% Similarity=0.727 Sum_probs=136.0
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~ 82 (165)
.|..+.+++|||+||++|+++...||+++-++++|||.++..||+.+.+|+.+...+.. +..+ +.+|++|+||...++
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 57889999999999999999999999999999999999999999999999999877765 4444 467899999998899
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCC
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAG 161 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 161 (165)
++-+++..++..+|+.++|+||++|.|+++.|.-|.+.|.....++++..+..=.+.+++.-- ++. .....+-++
T Consensus 134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~----s~~~~~P~k 209 (213)
T KOG0091|consen 134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPR----SPSRKQPSK 209 (213)
T ss_pred ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCC----cccccCCCC
Confidence 999999999999999999999999999999999999999999999888888887777774221 111 233445567
Q ss_pred CCCC
Q 031132 162 GCCS 165 (165)
Q Consensus 162 ~c~~ 165 (165)
.|||
T Consensus 210 ~c~C 213 (213)
T KOG0091|consen 210 PCQC 213 (213)
T ss_pred CCCC
Confidence 8888
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=1.7e-27 Score=172.11 Aligned_cols=123 Identities=39% Similarity=0.732 Sum_probs=113.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|+++|+.+++.+++++|++|+|||++++.+|+.+..|+..+.... .+.|++||+||.||...+
T Consensus 48 i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~ 126 (189)
T cd04121 48 ILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKR 126 (189)
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhcc
Confidence 5678999999999999999999999999999999999999999999999999999997765 579999999999997777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.++.++++.++...++++++|||++|.|++++|++|.+.+..+.
T Consensus 127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred CCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999887543
No 12
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.6e-28 Score=164.48 Aligned_cols=131 Identities=35% Similarity=0.666 Sum_probs=121.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+||++|.++.+.||++++++++|||.+|..||..+++|+.++.......+-++||+||+||.+++
T Consensus 55 ~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 55 VNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred cccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 56788899999999999999999999999999999999999999999999999999988876678899999999999999
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 132 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~ 132 (165)
+++..++..++..-|..|+++||+++.||.++|+.|....++.....+...
T Consensus 135 ~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~ 185 (218)
T KOG0088|consen 135 QVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTR 185 (218)
T ss_pred hhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999999999999999999999999998888776655444
No 13
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.9e-28 Score=162.62 Aligned_cols=124 Identities=43% Similarity=0.756 Sum_probs=119.0
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
|+.|+|..+.+++|||+|+++|+.+...|+++.+++++|||+++.+||.....|+..+...+ ..+|-++|+||.|+++.
T Consensus 49 Tv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 49 TVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPER 127 (198)
T ss_pred EeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999998 57899999999999888
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
+.+..++++.++...++.++|+||+.+.|++..|..|.++++..+
T Consensus 128 rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 128 RVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred eeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999998866
No 14
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=6.2e-27 Score=169.26 Aligned_cols=146 Identities=38% Similarity=0.652 Sum_probs=123.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~ 78 (165)
+.+++..+.+++|||+|+++|..++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 40 VVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 35778889999999999999999999999999999999999999999999999988876542 468999999999997
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCC
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSS 158 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
....+...+...++..++++++++||++|.|++++|+++++.+.++...+. +|...+...+.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------------------~~~~~~~~~~~ 181 (190)
T cd04144 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------------------GPKGGPTKKKE 181 (190)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------------------CCcCCCCCccc
Confidence 666777777788888889999999999999999999999998876666542 11222466677
Q ss_pred CCCCCCC
Q 031132 159 QAGGCCS 165 (165)
Q Consensus 159 ~~~~c~~ 165 (165)
+.++|||
T Consensus 182 ~~~~~~~ 188 (190)
T cd04144 182 KKKRKCV 188 (190)
T ss_pred ccccCce
Confidence 8888886
No 15
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=6e-28 Score=165.23 Aligned_cols=125 Identities=46% Similarity=0.775 Sum_probs=117.6
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
.|.++|..+.+.+|||+||++|+.+.+.||++|.++|+|||++.+++|..+..|++++..++. +++-.++|+||.|...
T Consensus 52 ~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 52 VMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred EEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 378999999999999999999999999999999999999999999999999999999998886 6677889999999877
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
++.++.++...++.++++-++|+||++.+|+...|+.++..|++.-
T Consensus 132 ~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 132 ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 8889999999999999999999999999999999999999998743
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=6.1e-27 Score=170.68 Aligned_cols=154 Identities=36% Similarity=0.622 Sum_probs=123.6
Q ss_pred eeeC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCC
Q 031132 2 ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCD 76 (165)
Q Consensus 2 ~~i~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D 76 (165)
+.++ +..+.+.+|||+|+++++.+++.+++++|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|
T Consensus 42 v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 42 IEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred EEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 3455 7788999999999999999999999999999999999999999999999988765421 4689999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCC
Q 031132 77 LAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG 155 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
+.....+..+++..++...+ ..++++||++|.|++++|++|.+.+++.......+.+... ....... +..
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~-----~~~ 192 (201)
T cd04107 122 LKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPED----GSVIDLK-----QTT 192 (201)
T ss_pred cccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCc----ccccccc-----cce
Confidence 97556678888889999888 6899999999999999999999998876544433332211 1111111 466
Q ss_pred CCCCCCCCC
Q 031132 156 SSSQAGGCC 164 (165)
Q Consensus 156 ~~~~~~~c~ 164 (165)
+..++++||
T Consensus 193 ~~~~~~~~~ 201 (201)
T cd04107 193 TKKKSKGCC 201 (201)
T ss_pred eccccCCCC
Confidence 777788898
No 17
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.6e-26 Score=168.68 Aligned_cols=158 Identities=46% Similarity=0.789 Sum_probs=125.9
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~ 83 (165)
++..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... ...|++||+||+|+.+...+
T Consensus 48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v 127 (211)
T cd04111 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV 127 (211)
T ss_pred CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence 46778999999999999999999999999999999999999999999999999876654 45788999999999776778
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeecc----CC-CCCCCCCCCCCCC
Q 031132 84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGY----GG-IPGPSGGRDGSSS 158 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~ 158 (165)
..++...++..++++++++||++|+|++++|++|.+.+.++..+..+.......+.+.+. +- ++-+ .-++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 204 (211)
T cd04111 128 TREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEER---SPTFAS 204 (211)
T ss_pred CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcc---cccccC
Confidence 888888899999999999999999999999999999998887666534333332222221 11 1111 123455
Q ss_pred CCCCCCC
Q 031132 159 QAGGCCS 165 (165)
Q Consensus 159 ~~~~c~~ 165 (165)
-.++|||
T Consensus 205 ~~~~~~~ 211 (211)
T cd04111 205 PEKSCCC 211 (211)
T ss_pred CCCCCCC
Confidence 6788998
No 18
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=5.4e-26 Score=167.57 Aligned_cols=131 Identities=50% Similarity=0.872 Sum_probs=116.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++++..++..++++++++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus 54 v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 133 (216)
T PLN03110 54 LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (216)
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc
Confidence 56788899999999999999999999999999999999999999999999999998887755579999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 132 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~ 132 (165)
.+..++.+.++...+++++++||++|.|++++|++|...+.+....+....
T Consensus 134 ~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~ 184 (216)
T PLN03110 134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAA 184 (216)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence 777888888888889999999999999999999999999988665544333
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.7e-26 Score=168.69 Aligned_cols=125 Identities=27% Similarity=0.535 Sum_probs=111.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.++||||+|+++|..+++.+++++|++|+|||++++.+|+. +..|+..+.... .+.|++||+||+||..
T Consensus 54 i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~ 132 (232)
T cd04174 54 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTD 132 (232)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc
Confidence 4678999999999999999999999999999999999999999999998 478999888765 5789999999999853
Q ss_pred -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCC-CHHHHHHHHHHHHHHHHhc
Q 031132 80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQ-NVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~-~i~~l~~~l~~~i~~~~~~ 127 (165)
...++.++++.++..+++ .|++|||++|+ |++++|..+...++++..+
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 256888899999999998 59999999998 8999999999998876555
No 20
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=158.09 Aligned_cols=151 Identities=35% Similarity=0.595 Sum_probs=127.5
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+..+.+++|||+||++|+++...++++|-+++++||.++..||-.+++|+..+..+.- .+..+++.+||+||.+.+.++
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 5678899999999999999999999999999999999999999999999999976654 567799999999999989999
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCCCC
Q 031132 85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAGGC 163 (165)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c 163 (165)
..++..++.++++||+|+||-+|.|+++..+.++..++++.++- .+.+.-+.+...++-+ . ....+.+++-|
T Consensus 144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~-v~~s~~p~~~~~~~~g~~------~~e~~~~~~~c 216 (219)
T KOG0081|consen 144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQC-VEKSEIPLLVTRSNCGHL------DGEEPCERKNC 216 (219)
T ss_pred HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHH-HhhcccchhhhccccccC------CCCCChhhhcc
Confidence 99999999999999999999999999999999999999987764 3444445555444421 1 23445555666
No 21
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=2e-26 Score=160.97 Aligned_cols=126 Identities=35% Similarity=0.662 Sum_probs=115.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL 77 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl 77 (165)
+.||++.+++++|||+||++|.++.-.+|++||.+++|||+++..||+.+..|..++..+.. ...|+||++||.|+
T Consensus 51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 67999999999999999999999999999999999999999999999999999999988876 35899999999999
Q ss_pred CC--CCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 78 AH--RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.+ .++++...++.++... ++||+|+||+...|+.++|..+....+.....
T Consensus 131 ~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 131 DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred CCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 65 2688999999999876 58899999999999999999999998886644
No 22
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=7.6e-26 Score=161.86 Aligned_cols=122 Identities=43% Similarity=0.725 Sum_probs=110.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+.||||+|++++..++..++++||++|+|||++++.+|+.+..|+..+......+.|++||+||+||....
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 56789999999999999999999999999999999999999999999999999998876654578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+...++..++..++..++++||++|.|++++|++|...+.+
T Consensus 102 ~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 102 KVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 678888888888888899999999999999999999988755
No 23
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=156.43 Aligned_cols=124 Identities=44% Similarity=0.807 Sum_probs=117.0
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+.+.+.+++|||+|+++|+.+...++++|+++|++||.++.+||+.+..|.-.+..++-.+.|+++++||||+..++.++
T Consensus 66 ~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis 145 (193)
T KOG0093|consen 66 SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS 145 (193)
T ss_pred cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee
Confidence 45678999999999999999999999999999999999999999999999999988877789999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+.++.++.++|+.++|+||+.+.|++++|+.++..|.+...++
T Consensus 146 ~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 146 HERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999876553
No 24
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.94 E-value=2.6e-25 Score=161.91 Aligned_cols=127 Identities=41% Similarity=0.733 Sum_probs=113.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.++..+..|+..+.... ...|++||+||+|+....
T Consensus 48 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 48 VEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERK 126 (199)
T ss_pred EEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccccc
Confidence 3456888899999999999999999999999999999999999999999999999887665 568999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+...+...++...+++++++||++|.|++++|++|...++.....+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~ 174 (199)
T cd04110 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNL 174 (199)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccC
Confidence 677788888888889999999999999999999999999988766553
No 25
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.7e-25 Score=165.13 Aligned_cols=124 Identities=32% Similarity=0.507 Sum_probs=108.7
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC------
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH------ 79 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------ 79 (165)
.+.+.+.+|||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+......+.|++||+||+||.+
T Consensus 41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~ 120 (220)
T cd04126 41 WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAG 120 (220)
T ss_pred eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccc
Confidence 35678999999999999999999999999999999999999999999988887765445789999999999965
Q ss_pred -------------CCCCCHHHHHHHHHHcC--------------CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 80 -------------RRAVSTEEGEQFAKEHG--------------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 80 -------------~~~~~~~~~~~~~~~~~--------------~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+.+..+++..++...+ ++|+||||++|.|++++|..+.+.++.......
T Consensus 121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 45677888999998876 689999999999999999999999887655544
No 26
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=2.7e-25 Score=160.83 Aligned_cols=124 Identities=48% Similarity=0.823 Sum_probs=111.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......++|+++++||+|+....
T Consensus 43 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 43 VTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 46788889999999999999999999999999999999999999999999999999887754578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.+...+...++..++++++++||++|.|++++|.+|.+.+....
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 67777888888888999999999999999999999999987664
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=1.8e-25 Score=159.30 Aligned_cols=125 Identities=33% Similarity=0.545 Sum_probs=112.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++++.++..+++++|++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+...
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 43 ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 56789999999999999999999999999999999999999999999999998888776543 57999999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
..++.++...++...++++++|||++|.|++++|++|...+.+...
T Consensus 123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence 7788888888998889999999999999999999999998876443
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=1.1e-25 Score=161.89 Aligned_cols=120 Identities=28% Similarity=0.569 Sum_probs=108.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ++.|++||+||+||.+
T Consensus 46 ~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~ 124 (182)
T cd04172 46 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124 (182)
T ss_pred EEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcC
Confidence 56889999999999999999999999999999999999999999999997 78999988765 5789999999999853
Q ss_pred -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHH
Q 031132 80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIY 122 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~ 122 (165)
...++.+++..++..+++ +|+||||++|.| ++++|..++..++
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 245888999999999996 899999999998 9999999998654
No 29
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=4.8e-25 Score=158.96 Aligned_cols=128 Identities=44% Similarity=0.739 Sum_probs=115.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+++|||+|++++..++..+++++|++|+|||++++.++..+..|+..+........|+++++||+|+.+..
T Consensus 42 ~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 42 VYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 46778889999999999999999999999999999999999999999999999999887654568999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+.......++...+++++++||++|.|++++|.+|.+.+.++....+
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~ 169 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE 169 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 677778888888888999999999999999999999999988766654
No 30
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=153.85 Aligned_cols=126 Identities=48% Similarity=0.837 Sum_probs=117.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++++.+++|||+||++|++....||++||+++++||..++.||+....|+..+..+....+.+.+++||+|+..++
T Consensus 40 i~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er 119 (192)
T KOG0083|consen 40 IDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER 119 (192)
T ss_pred eccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh
Confidence 57899999999999999999999999999999999999999999999999999999998876678899999999997778
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.+..++...+++.+++|++++||++|.|++-.|-.|.+.+.++...
T Consensus 120 ~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 120 AVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred ccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 8888999999999999999999999999999999999988776554
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=2.6e-25 Score=161.01 Aligned_cols=121 Identities=24% Similarity=0.548 Sum_probs=106.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.++++.+.+++|||+|+++|+.+++.+++++|++|+|||++++.||+.+. .|+..+.... .++|++||+||.||.+.
T Consensus 44 ~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 44 TAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 467899999999999999999999999999999999999999999999997 5877776554 57999999999999543
Q ss_pred ------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+..+++..++..++ ++++++||++|+|++++|.++.+.++.
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 2356678888888888 589999999999999999999998865
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=4.5e-25 Score=155.94 Aligned_cols=122 Identities=65% Similarity=1.055 Sum_probs=111.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus 44 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 44 IEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 45788899999999999999999999999999999999999999999999999998876654678999999999997777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++...+++++++||++|.|+.++|.++...+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 778888888888889999999999999999999999988754
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=2e-25 Score=159.73 Aligned_cols=120 Identities=32% Similarity=0.654 Sum_probs=107.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|+.+++.+++++|++|+|||++++.||+.+ ..|+..+.... .+.|++||+||+||.+.
T Consensus 42 ~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 42 VSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDD 120 (176)
T ss_pred EEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccC
Confidence 46789999999999999999999999999999999999999999999998 68999887665 57999999999999543
Q ss_pred C----------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 R----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~----------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
. .+..+++..++...++ .++||||++|.|++++|+.+.+.++
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 121 KQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred hhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 2 4778889999999998 5999999999999999999998763
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=1.3e-24 Score=160.60 Aligned_cols=125 Identities=25% Similarity=0.535 Sum_probs=107.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.||||+|++.|..+++.+++++|++|+|||++++.+|+.+. .|...+.... .+.|++||+||+||...
T Consensus 42 ~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 42 FEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccc
Confidence 568899999999999999999999999999999999999999999999985 4666555544 67999999999999542
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHHHHHhc
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~~~~~~ 127 (165)
..++.+++..++...+. +|+||||++++| ++++|+.+....+.+...
T Consensus 121 ~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 121 LATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred hhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence 13677889999999995 899999999985 999999999988775543
No 35
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.94 E-value=8.5e-25 Score=161.03 Aligned_cols=118 Identities=32% Similarity=0.538 Sum_probs=106.9
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~ 83 (165)
..+.+++|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.....+
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 578999999999999999999999999999999999999999999999999877643 34689999999999766777
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..++...++..++++++++||++|+|++++|++|...+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 88888888988999999999999999999999999998874
No 36
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-25 Score=148.15 Aligned_cols=139 Identities=62% Similarity=1.018 Sum_probs=127.4
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+|.+.|+++.+++|||+|+++|+...+.|++++.+.++|||.+.+.+++.+..|+.......+++.-+++++||.||...
T Consensus 52 iievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 52 IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred EEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence 36789999999999999999999999999999999999999999999999999999988887778889999999999988
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI 139 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~ 139 (165)
+.++-++...++++.|+-++++||++|.|+++.|-...++|.+...++-++...--.+.
T Consensus 132 rdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgv 190 (215)
T KOG0097|consen 132 RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGV 190 (215)
T ss_pred ccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccC
Confidence 89999999999999999999999999999999999999999998888776655544444
No 37
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=5.7e-25 Score=157.64 Aligned_cols=120 Identities=30% Similarity=0.577 Sum_probs=107.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ++.|++||+||+||.+
T Consensus 42 ~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~ 120 (178)
T cd04131 42 FEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTD 120 (178)
T ss_pred EEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcC
Confidence 56789999999999999999999999999999999999999999999996 78999888776 5789999999999853
Q ss_pred -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHH
Q 031132 80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIY 122 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~ 122 (165)
...++.+++..++..+++ +++||||++|+| ++++|..+.+..+
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 235788899999999997 799999999995 9999999998654
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=1e-24 Score=157.47 Aligned_cols=126 Identities=40% Similarity=0.654 Sum_probs=112.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+.+.
T Consensus 46 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 46 CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46889999999999999999999999999999999999999999999999999988876543 57899999999999766
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+...+...++..++++++++||++|.|+.++|.+|.+.+.+...+
T Consensus 126 ~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172 (189)
T ss_pred cccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 66777777788888889999999999999999999999988765443
No 39
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=151.36 Aligned_cols=126 Identities=46% Similarity=0.788 Sum_probs=116.5
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
|+.++|+++.+++|||+|+++|+++...||+.|+++|+|||.+..++|+-+..|+.++..+.+..+..++|+||.|+.+.
T Consensus 48 tvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 48 TVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred EEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 57899999999999999999999999999999999999999999999999999999999998877888999999999888
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
++++......+.......++++||+..+|++.+|..+.-.++....
T Consensus 128 revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 128 REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEAR 173 (213)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 8888888888988888889999999999999999999887766433
No 40
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=4.1e-24 Score=151.25 Aligned_cols=122 Identities=54% Similarity=0.925 Sum_probs=110.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++++..++..+++++|++++|||+++..++..+..|+..+......+.|+++++||+|+.+..
T Consensus 45 ~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 45 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 45688889999999999999999999999999999999999999999999999999887654678999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++..++++++++||++|.|++++|.++.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 125 VVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 677778888888889999999999999999999999998864
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=3.2e-24 Score=153.33 Aligned_cols=119 Identities=40% Similarity=0.714 Sum_probs=108.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 5678899999999999999999999999999999999999999999999998876543 478999999999997766778
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.++...++...+++++++||++|.|++++|++|.+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8888899999999999999999999999999999988764
No 42
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.93 E-value=3.6e-24 Score=156.03 Aligned_cols=120 Identities=31% Similarity=0.608 Sum_probs=105.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+++|||+|+++|..+++.+++++|++|+|||+++..+++.+..|+..+.... .++|+++|+||+|+.. .
T Consensus 37 ~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~ 114 (200)
T smart00176 37 FHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-R 114 (200)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-c
Confidence 4567889999999999999999999999999999999999999999999999999998775 5799999999999854 3
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+..+. ..++...++.+++|||++|.|++++|++|...+.+.
T Consensus 115 ~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 115 KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 344443 356777889999999999999999999999988764
No 43
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=8.6e-24 Score=152.86 Aligned_cols=125 Identities=34% Similarity=0.620 Sum_probs=108.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR- 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~- 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+...
T Consensus 43 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~ 121 (193)
T cd04118 43 MVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQD 121 (193)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccc
Confidence 5678888999999999999999999999999999999999999999999999998887653 47899999999998532
Q ss_pred ---CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 ---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+...++..++...+.+++++||+++.|++++|+++.+.+.++..+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~ 171 (193)
T cd04118 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANN 171 (193)
T ss_pred cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 23455667777788889999999999999999999999999876543
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=2.6e-24 Score=151.09 Aligned_cols=120 Identities=39% Similarity=0.647 Sum_probs=106.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..+++.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 42 IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 56788899999999999999999999999999999999999999999999999988876643 57899999999999765
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+...+...++..++.+++++||++|.|++++|+++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 56667777777888888999999999999999999998765
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=5.3e-24 Score=150.29 Aligned_cols=122 Identities=53% Similarity=0.918 Sum_probs=110.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++++||+|+....
T Consensus 44 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 44 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 45678889999999999999999999999999999999999999999999999999877654578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+...++..++...+++++++||++|+|++++|.+|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 777788888888889999999999999999999999988753
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=5.9e-24 Score=150.18 Aligned_cols=121 Identities=45% Similarity=0.790 Sum_probs=108.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
..+++.+.+++|||+|++++..++..+++++|++++|||+++..+++.+..|+..+........|+++++||+|+.+...
T Consensus 44 ~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 44 FRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV 123 (165)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccc
Confidence 45677889999999999999999999999999999999999999999999999998776545789999999999976666
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+..++...++..++++++++||++|.|+.++|+++...+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 124 VSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 67777888888889999999999999999999999887643
No 47
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=6.4e-24 Score=149.61 Aligned_cols=119 Identities=41% Similarity=0.772 Sum_probs=108.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|++++..++..+++++|++++|||+++..+|+.+..|+..+......+.|+++|+||.|+....
T Consensus 42 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 42 IEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred EEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 45677888999999999999999999999999999999999999999999999998877654578999999999997777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.+...+...+++..+.+++++||++|.|++++|.+|.+.
T Consensus 122 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 122 QVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 778888899998889999999999999999999999764
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=4.8e-24 Score=150.26 Aligned_cols=121 Identities=36% Similarity=0.633 Sum_probs=107.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 42 VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred EEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 45788899999999999999999999999999999999999999999999999998876543 57899999999999766
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+...+...++...+++++++||++|.|++++|.++.+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 666667777788888899999999999999999999987653
No 49
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=3e-24 Score=155.97 Aligned_cols=115 Identities=25% Similarity=0.475 Sum_probs=101.5
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-- 79 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-- 79 (165)
.+++..+.+++|||+|++. .+.+.+++++|++|+|||++++.||+.+. .|+..+.... .+.|+++|+||+||..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYAD 136 (195)
T ss_pred eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccc
Confidence 5789999999999999975 35667899999999999999999999997 5888887665 4789999999999853
Q ss_pred -----------------CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 80 -----------------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 80 -----------------~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.+.++.++++.++..++++|+||||++|.|++++|+.++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35678889999999999999999999999999999998764
No 50
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=9.6e-24 Score=148.25 Aligned_cols=121 Identities=41% Similarity=0.795 Sum_probs=113.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|+++|..++..+++++|++|+|||++++.|++.+..|+..+......+.|++|++||.|+...+
T Consensus 41 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 41 VSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp EEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 57889999999999999999999999999999999999999999999999999999998875568999999999998778
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.++.++++.++..++.+++++||+++.|+.++|..+++.+.
T Consensus 121 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 121 EVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999875
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=6e-24 Score=151.88 Aligned_cols=119 Identities=23% Similarity=0.511 Sum_probs=103.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.++++.+.+++|||+|+++|..++..+++++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 42 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred EEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence 456788899999999999999999999999999999999999999999997 4887776654 57899999999998543
Q ss_pred ------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+.+..+++..++...+ +.++++||++|.|++++|+.++...
T Consensus 121 ~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4567777888888877 6899999999999999999998754
No 52
>PLN03118 Rab family protein; Provisional
Probab=99.92 E-value=3.7e-23 Score=151.85 Aligned_cols=123 Identities=50% Similarity=0.816 Sum_probs=106.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.||||+|++++..++..+++++|++|+|||+++..++..+.. |...+..... .+.|+++|+||+|+..
T Consensus 55 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 55 LTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4567888999999999999999999999999999999999999999999876 4454443332 4679999999999976
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...+..++...++...+++++++||+++.|++++|++|.+.+...
T Consensus 135 ~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 135 ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 666777778788888899999999999999999999999998764
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.9e-23 Score=150.25 Aligned_cols=122 Identities=32% Similarity=0.554 Sum_probs=106.2
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC----
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR---- 80 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~---- 80 (165)
+..+.+++|||+|++++..+++.+++++|++|+|||+++..+|+.+.. |+..+.... .+.|+++|+||+|+...
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~ 124 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLD 124 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCcccc
Confidence 678899999999999999999999999999999999999999998864 777776544 57899999999998543
Q ss_pred CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
..+...+...++...++ +++++||++|.|+.++|..+.+.+.......
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 125 RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 24567788888888888 8999999999999999999999998766553
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=2.2e-23 Score=146.68 Aligned_cols=121 Identities=33% Similarity=0.677 Sum_probs=108.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-----CCCeEEEEeeCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-----ANMTIMLIGNKCD 76 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~D 76 (165)
+.+++..+.+++|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 42 VSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 45678889999999999999999999999999999999999999999999999999877653 3689999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+.++..+..++...++...+++++++||++|+|+.++|++|++.++
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred cccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9755567778888888888899999999999999999999998876
No 55
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=1.3e-23 Score=147.84 Aligned_cols=120 Identities=35% Similarity=0.588 Sum_probs=105.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|..++..+++++|++++|||+++..+++.+..|+..+..... .++|+++++||+|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 42 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred EEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 56788889999999999999999999999999999999999999999999999988876643 57899999999999665
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+...+...++...+++++++||+++.|+.++|.++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 56666667777777788999999999999999999998654
No 56
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=1.7e-23 Score=150.50 Aligned_cols=121 Identities=26% Similarity=0.480 Sum_probs=103.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR- 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~- 80 (165)
+.+++..+.+++|||+|+++|..+++.+++++|++++|||++++.+++.+..|+..+........| ++|+||+|+...
T Consensus 42 i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 42 ISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 567888999999999999999999999999999999999999999999999999988776434566 678999998421
Q ss_pred ----CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 ----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
......+...++..++.+++++||++|.|++++|+++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1112345667788888999999999999999999999998875
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=1.5e-23 Score=149.68 Aligned_cols=118 Identities=29% Similarity=0.582 Sum_probs=103.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++.|..+++.+++++|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 42 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120 (174)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccC
Confidence 467888999999999999999999999999999999999999999999996 5877776654 57999999999999532
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..+..+++..++..++. +++++||++|+|++++|+.+...
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 24677888889988884 89999999999999999998764
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=4e-23 Score=145.59 Aligned_cols=120 Identities=58% Similarity=0.956 Sum_probs=108.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|++++..+++.++++++++|+|||+++..++..+..|+..+......+.|+++|+||+|+....
T Consensus 45 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 45 IQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred EEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 45678888999999999999999999999999999999999999999999999999887764568999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+..++...++...+++++++||++|.|++++|+++...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6777788888888889999999999999999999998765
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=2e-23 Score=150.86 Aligned_cols=121 Identities=33% Similarity=0.609 Sum_probs=103.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++.|..+++.+++++|++|+|||+++..+|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 41 i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 41 IFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREA 119 (189)
T ss_pred EEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 457888899999999999999999999999999999999999999999886 5888887654 57899999999999643
Q ss_pred C------------CCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 R------------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~------------~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
. .+..++...++...+ ++++++||++|.|++++|.+|.+.++.
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 120 RNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2 244556677777776 689999999999999999999998873
No 60
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=6.1e-23 Score=145.43 Aligned_cols=122 Identities=87% Similarity=1.264 Sum_probs=110.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+......+.|+++++||.|+....
T Consensus 46 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 46 ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 45788889999999999999999999999999999999999999999999999999877655679999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++...+++++++||+++.|++++|.++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 126 EVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 677888888888889999999999999999999999988754
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=4.2e-23 Score=145.23 Aligned_cols=121 Identities=43% Similarity=0.683 Sum_probs=107.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..+++.+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 41 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 41 IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45788889999999999999999999999999999999999999999999999888876543 47899999999999765
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+.......++...+.+++++||++|.|++++|++|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 666777788888888999999999999999999999998765
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=5.2e-23 Score=144.58 Aligned_cols=120 Identities=36% Similarity=0.592 Sum_probs=106.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..+++.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus 43 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 43 CEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred EEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 35788889999999999999999999999999999999999999999999999988876543 57899999999999765
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+...+...++...+++++++||++|.|++++|++|...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 56667777788888889999999999999999999998764
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=2.3e-23 Score=147.96 Aligned_cols=121 Identities=30% Similarity=0.592 Sum_probs=105.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+++..+|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 39 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 39 VEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLRED 117 (174)
T ss_pred EEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhC
Confidence 467888999999999999999999999999999999999999999999986 4888887654 57999999999998542
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..++.++...++...+. +++++||++|.|++++|+.+.+.+++
T Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 118 KSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred hhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 23667777888888886 89999999999999999999988753
No 64
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=3.8e-23 Score=152.71 Aligned_cols=119 Identities=31% Similarity=0.563 Sum_probs=104.0
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+.+.+|||+|+++|..++..+++++|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.. ..
T Consensus 56 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~ 133 (219)
T PLN03071 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ 133 (219)
T ss_pred EECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-cc
Confidence 456778999999999999999999999999999999999999999999999999998765 5799999999999853 33
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+..... .++...+++++++||++|.|++++|.+|.+.+.+.
T Consensus 134 v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 134 VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444 66677789999999999999999999999988754
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=6.9e-23 Score=143.83 Aligned_cols=120 Identities=61% Similarity=0.984 Sum_probs=108.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|++++..+++.+++++|++++|||++++.++..+..|+..+......+.|+++++||+|+....
T Consensus 42 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 42 IRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred EEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 46778889999999999999999999999999999999999999999999999998876655689999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+...+...++...+++++++||+++.|+.++|+++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 6778888888888999999999999999999999998753
No 66
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=9.4e-23 Score=143.15 Aligned_cols=122 Identities=64% Similarity=0.982 Sum_probs=110.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+.+||++|++++..++..+++.+|++++|||++++.+++.+..|+..+......++|+++++||+|+....
T Consensus 42 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 42 IEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 45778888999999999999999999999999999999999999999999999999887765679999999999987656
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..+.+..++...+++++++||.++.|++++|++|.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 677788888888889999999999999999999999998764
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.91 E-value=1.3e-22 Score=144.37 Aligned_cols=122 Identities=34% Similarity=0.639 Sum_probs=104.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|..++..+++++|++++|||+++..++..+..|+..+.+... ...|+++|+||.|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 42 FEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred EEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 45678889999999999999999999999999999999999999999999999998865532 35789999999998544
Q ss_pred CC--CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.. ....+...++.+++.+++++||++|.|++++|+.|...+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 122 AQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33 23556667777888899999999999999999999887754
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=1.6e-22 Score=141.45 Aligned_cols=119 Identities=39% Similarity=0.677 Sum_probs=104.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|+++++.++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+..
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~- 120 (162)
T cd04138 42 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA- 120 (162)
T ss_pred EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-
Confidence 45788888899999999999999999999999999999999999999999999988877653 5789999999999864
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
......+...++...+++++++||++|.|++++|+++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 121 RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 34556677777888889999999999999999999998654
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=1.4e-22 Score=142.65 Aligned_cols=119 Identities=32% Similarity=0.563 Sum_probs=103.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.+++.+..|+..+.... .+.|+++++||+|+...
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~- 119 (161)
T cd04124 42 AKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS- 119 (161)
T ss_pred EEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh-
Confidence 3567889999999999999999999999999999999999999999999999999887654 47899999999998431
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...+...++...+++++++||++|.|++++|+.+.+.+..+
T Consensus 120 --~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred --HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 23345556667788999999999999999999999888764
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=1.5e-22 Score=142.94 Aligned_cols=118 Identities=36% Similarity=0.525 Sum_probs=103.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~ 78 (165)
+..++..+.+++|||+|++++..++..+++.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 42 ISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 34577888999999999999999999999999999999999999999999999887765432 468999999999997
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
....+...+...++..++++++++||++|+|++++|++|+.
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 65667777777788888889999999999999999999875
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=1.7e-22 Score=142.58 Aligned_cols=119 Identities=50% Similarity=0.884 Sum_probs=105.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++.+..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus 45 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 45 LEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred EEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 45678888999999999999999999999999999999999999999999999999876544678999999999997666
Q ss_pred CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.+...+...++...+. .++++||++|.|++++|+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 125 EVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 6777788888888775 58999999999999999999864
No 72
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=1.8e-22 Score=141.67 Aligned_cols=114 Identities=37% Similarity=0.661 Sum_probs=103.3
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+.... .++|+++++||.|+.....+..
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~ 126 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITN 126 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCH
Confidence 667889999999999999999999999999999999999999999999999887655 5799999999999976666777
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
++...++...+++++++||++|.|++++|++|...
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 127 EEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 88888888899999999999999999999998653
No 73
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=1.7e-22 Score=149.48 Aligned_cols=126 Identities=27% Similarity=0.358 Sum_probs=107.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYR-GAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++ ......++. ++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus 43 i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 43 VSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 5678889999999999998 334455667 99999999999999999999999998876543 5789999999999976
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
...+..++...++...+++++++||+++.|++++|+++..++..+....+
T Consensus 121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence 66677777788888889999999999999999999999999876555543
No 74
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.90 E-value=1.9e-22 Score=142.82 Aligned_cols=118 Identities=32% Similarity=0.617 Sum_probs=102.3
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
..+++.+.+.+|||+|++.+..++..++..+|++|+|||+++..++..+..|+..+..... +.|+++|+||+|+.. ..
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~ 120 (166)
T cd00877 43 HTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RK 120 (166)
T ss_pred EECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-cc
Confidence 4567889999999999999999999999999999999999999999999999999987763 799999999999963 23
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.. .+...++...+++++++||++|+|++++|++|.+.+.+
T Consensus 121 ~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 121 VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 33 33445666677889999999999999999999998875
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=2.3e-22 Score=142.78 Aligned_cols=120 Identities=41% Similarity=0.770 Sum_probs=107.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+++|||+|+++++ .+++.+++++|++++|||++++.++..+..|+..+..... .++|+++|+||+|+..
T Consensus 44 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 44 VEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 4578888999999999999987 5889999999999999999999999999999998887653 5799999999999977
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i~~l~~~l~~~i 121 (165)
...+...+...++...+++++++||++ +.|++++|..+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 777778888888888889999999999 999999999998765
No 76
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=2.4e-22 Score=142.36 Aligned_cols=118 Identities=37% Similarity=0.687 Sum_probs=104.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL 77 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl 77 (165)
+.++++.+.+++||++|++++..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+
T Consensus 47 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (170)
T cd04116 47 LEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI 126 (170)
T ss_pred EEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc
Confidence 45789999999999999999999999999999999999999999999999999988766542 46899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
. ...+...+++.++..++. +++++||++|.|+.++|+.+++.
T Consensus 127 ~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 127 P-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred c-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 5 455677888888888874 79999999999999999999865
No 77
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=5.3e-22 Score=139.40 Aligned_cols=120 Identities=48% Similarity=0.885 Sum_probs=108.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+||++|++++...+..+++++|++|+|||+++..++..+..|+..+........|+++++||+|+....
T Consensus 43 v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 43 VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred EEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 56788899999999999999999999999999999999999999999999999999877755678999999999987656
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.....+...++...+++++++||++|.|+.++|++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 123 QVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6677788888888889999999999999999999999875
No 78
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=5.7e-22 Score=138.96 Aligned_cols=119 Identities=47% Similarity=0.818 Sum_probs=106.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|+.++..++..+++.+|++++|||++++.++..+..|+..+......+.|+++++||+|+....
T Consensus 42 ~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 42 MYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 45677888999999999999999999999999999999999999999999999998876654469999999999996656
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
....++...++...+++++++||++++|++++|+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 122 QVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 677778888888888999999999999999999999764
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=5.3e-22 Score=140.52 Aligned_cols=121 Identities=36% Similarity=0.609 Sum_probs=107.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|+++|..+++.++++++++++|||.+++.+++.+..|...+..... .+.|+++++||.|+...
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 42 VEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred EEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 45788889999999999999999999999999999999999999999999999888876543 57999999999999766
Q ss_pred CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+..++...++..++ ++++++||+++.|++++|.++..+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 6677777777777777 78999999999999999999998764
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=2.8e-22 Score=141.05 Aligned_cols=114 Identities=17% Similarity=0.343 Sum_probs=98.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA-- 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~-- 78 (165)
+.+++..+.+.+|||+|++. ..+++++|++++|||.+++.||+.+..|+..+..... .+.|+++|+||.|+.
T Consensus 40 i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 40 VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 57889999999999999975 3567899999999999999999999999999987754 568999999999984
Q ss_pred CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..+.+..+++..++.+. ++.+++|||++|.||+++|..+.+.
T Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 34567777888888776 4899999999999999999998754
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=8.7e-22 Score=137.75 Aligned_cols=120 Identities=42% Similarity=0.767 Sum_probs=107.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+||++|++.+..+++.+++++|++++|||+++..++..+..|+..+......++|+++++||+|+....
T Consensus 42 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 42 VNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 34567788999999999999999999999999999999999999999999999998877764578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+...+...++...+.+++++||++++|++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 122 VVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6777777778888899999999999999999999998865
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=7.3e-22 Score=139.29 Aligned_cols=121 Identities=37% Similarity=0.561 Sum_probs=104.9
Q ss_pred eeeCCEEEEEEEEeCCCchhh-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~ 78 (165)
+.++++.+.+++|||+|++++ ...+..+++++|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 40 VTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 468889999999999999863 4567788999999999999999999999999998887654 2479999999999996
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIY 122 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~ 122 (165)
....+..++...++...+.+++++||+++. |++++|..+.+.+.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 666677788888888889999999999994 99999999988664
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=6.8e-22 Score=139.08 Aligned_cols=115 Identities=30% Similarity=0.574 Sum_probs=102.6
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+..+.+.+|||+|++.+..+++.+++++|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+...+..
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 127 (164)
T cd04101 49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTD 127 (164)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCH
Confidence 677899999999999999999999999999999999999999999999998887664 5689999999999976666676
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...+.+....+++++++||+++.|++++|+.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 128 AQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 666677777788999999999999999999998865
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=7e-22 Score=140.61 Aligned_cols=117 Identities=29% Similarity=0.585 Sum_probs=101.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+++|||+|++++..+++.+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++++||+|+..
T Consensus 41 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 41 VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTD 119 (173)
T ss_pred EEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccC
Confidence 467888899999999999999999999999999999999999999999885 5887776543 4689999999999853
Q ss_pred -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132 80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.+.+..+++..++...+. +++++||++|.|++++|+.++.
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 345677788888888887 7999999999999999998764
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=1.4e-21 Score=146.62 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=104.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---------cCCCCeEEEEe
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---------ANANMTIMLIG 72 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~ 72 (165)
+.++++.+.++||||+|++.|..++..++.++|++|+|||+++..+|+.+..|+..+... ...+.|+++++
T Consensus 41 ~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 41 YSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred EEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 567889999999999999999999999999999999999999999999999998888654 11468999999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 73 NKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 73 nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
||+|+.....+..+++..++.. .++.++++||++|.|++++|++|.....
T Consensus 121 NK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred ECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 9999976556777777766553 3678999999999999999999998654
No 86
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=140.28 Aligned_cols=125 Identities=39% Similarity=0.608 Sum_probs=115.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.++++.+.+.++||+|++.+..+...++.++|++++||+.++..||+.+..++..+.+... ..+|+++|+||+|+...
T Consensus 44 ~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 44 LTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred EEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 67899999999999999999999999999999999999999999999999999999955544 56899999999999877
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
+.++.++++.++..++++++|+||+.+.|++++|..|+..+-....
T Consensus 124 R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 124 RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999998887443
No 87
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=7e-22 Score=141.95 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=93.5
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.+++||++|+++++.+|..+++++|++|||||+++..++.++..++..+..... .+.|++|++||+|+...
T Consensus 56 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-- 133 (181)
T PLN00223 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-- 133 (181)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--
Confidence 455567899999999999999999999999999999999999999988887777654322 47899999999998643
Q ss_pred CCHHHHHHHHHHc-----CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEH-----GLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...++......-. .+.++++||++|+|+.++|++|.+++..+
T Consensus 134 ~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 3333333222111 12356899999999999999999887654
No 88
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.88 E-value=1.7e-21 Score=141.84 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=100.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhh--------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCeEEE
Q 031132 2 ITIDNKPIKLQIWDTAGQESFR--------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIML 70 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~p~iv 70 (165)
+.++++.+.+++|||+|.+.+. ......++++|++|+|||++++.+++.+..|+..+.... ..++|+++
T Consensus 42 i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piii 121 (198)
T cd04142 42 VVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVV 121 (198)
T ss_pred EEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 4678888999999999975432 123345789999999999999999999999998887664 25789999
Q ss_pred EeeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 71 IGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 71 v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
|+||+|+...+....+....++. .++++++++||++|.|++++|+.+...+..+-
T Consensus 122 vgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 122 VGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred EEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 99999996655556666665544 56889999999999999999999998887543
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=6.4e-21 Score=134.89 Aligned_cols=124 Identities=42% Similarity=0.729 Sum_probs=107.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL 77 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl 77 (165)
+.+++..+.+++||++|++.+..++..+++++|++|+|||++++.++..+..|...+..... .++|+++++||+|+
T Consensus 42 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 42 VTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred EEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 45778889999999999999999999999999999999999999999988888887765543 26899999999999
Q ss_pred CCCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
..+.....++...+....+ .+++++||++|.|++++|+++.+.+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 122 EEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred ccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 7555566777777777777 78999999999999999999999888763
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=5.2e-21 Score=134.17 Aligned_cols=121 Identities=40% Similarity=0.675 Sum_probs=107.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.++++.+.+.+|||+|+..+..++..+++.+|++++|||.+++.++..+..|+..+..... .++|+++++||+|+.+.
T Consensus 41 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 41 VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 46788899999999999999999999999999999999999999999999999998887643 57999999999999654
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..........++..++++++++||++++|++++|+++.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 121 RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 445666677777788899999999999999999999988765
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=5.1e-21 Score=135.20 Aligned_cols=120 Identities=48% Similarity=0.813 Sum_probs=105.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+||++|++.+...+..+++.+|++++|||+++..++..+..|+..+......+.|+++++||+|+....
T Consensus 49 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 49 VEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 45788889999999999999999999999999999999999999999999999988876654578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+.......+......+++++||++|.|++++|++|.+.+
T Consensus 129 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 6666666777776778899999999999999999998765
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=4.5e-21 Score=134.47 Aligned_cols=118 Identities=49% Similarity=0.892 Sum_probs=104.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++.+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+..
T Consensus 42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~- 120 (161)
T cd01863 42 LTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN- 120 (161)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-
Confidence 34677889999999999999999999999999999999999999999999999998877754 6789999999999963
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.....++...++...+++++++||++|+|++++++.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 3456677788888889999999999999999999998875
No 93
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.88 E-value=5.7e-22 Score=141.95 Aligned_cols=124 Identities=34% Similarity=0.640 Sum_probs=111.1
Q ss_pred eeeC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 2 ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
++++ |+.+.+.+|||+||++|..+++..|..+|+++++|++.++.|++.+.. |+.++..++ ++.|+|+||+|.||+.
T Consensus 45 v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 45 VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRD 123 (198)
T ss_pred EEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhh
Confidence 5784 999999999999999999999999999999999999999999998655 999999998 7899999999999973
Q ss_pred C------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 80 R------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 80 ~------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
. ..++.+++..++.+.| ..|+||||+++.|++++|+..+...+....
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 2 3577888999999999 559999999999999999999998887543
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=1.3e-21 Score=138.96 Aligned_cols=114 Identities=21% Similarity=0.385 Sum_probs=92.7
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.+++|||+|+++++.+|+.+++++|++|||||+++..++.++..|+..+..... .+.|++||+||+|+.. .
T Consensus 48 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~ 125 (168)
T cd04149 48 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--A 125 (168)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--C
Confidence 344567899999999999999999999999999999999999999999888877764322 5689999999999854 2
Q ss_pred CCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
+..+++..+... ..++++++||++|+|++++|++|.+
T Consensus 126 ~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 126 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 455555554321 2346899999999999999999864
No 95
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.87 E-value=3.4e-21 Score=136.83 Aligned_cols=119 Identities=26% Similarity=0.515 Sum_probs=102.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++++|||.+++.+|+.+. .|+..+... ..+.|+++++||+|+.+.
T Consensus 41 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 41 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred EEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 467888899999999999999999999999999999999999999999886 477766655 367999999999998532
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..++.+++..++...+. +++++||++|.|++++|+.++..+
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 120 PKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 24666778888888886 699999999999999999999876
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=7.3e-22 Score=139.63 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=95.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++++.+.+.+||++|+++++.+|..+++++|++++|||+++..++..+..|+..+.... .++|+++|+||+|+....
T Consensus 37 ~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 37 VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR 115 (164)
T ss_pred EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC
Confidence 3466778899999999999999999999999999999999999999999999988876543 579999999999986544
Q ss_pred CCCH----HHHHHHHHHcCCeEEEecCCC------CCCHHHHHHHHHH
Q 031132 82 AVST----EEGEQFAKEHGLIFMEASAKT------AQNVEEAFIKTAA 119 (165)
Q Consensus 82 ~~~~----~~~~~~~~~~~~~~~~vSa~~------~~~i~~l~~~l~~ 119 (165)
.+.. .....++.+.+++++++||++ ++|++++|+.++.
T Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 116 SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 3221 122344455678889998888 9999999998864
No 97
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=4.4e-21 Score=136.13 Aligned_cols=118 Identities=21% Similarity=0.363 Sum_probs=96.7
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.+++|||+|++++..+|..+++++|+++||||++++.++.++..|+..+..... .+.|++|++||+|+.. .
T Consensus 38 ~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~ 115 (169)
T cd04158 38 VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--A 115 (169)
T ss_pred EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--C
Confidence 445567899999999999999999999999999999999999999999999888865432 4589999999999853 3
Q ss_pred CCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
++.++...++...+ +.++++||++|.|+.++|++|.+.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 116 LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 55666665543222 257899999999999999999877654
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=1.1e-21 Score=140.02 Aligned_cols=115 Identities=20% Similarity=0.364 Sum_probs=91.5
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~ 83 (165)
....+.+++|||+|++++..+|..+++++|++|||||++++.+++++..|+..+..... .+.|++||+||+|+.+. .
T Consensus 53 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~ 130 (175)
T smart00177 53 TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--M 130 (175)
T ss_pred EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--C
Confidence 34567899999999999999999999999999999999999999999998888765432 56899999999998542 2
Q ss_pred CHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 84 STEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...+...... ...+.++++||++|+|+.++|++|...+
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 3333332221 1123477899999999999999998764
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=5.7e-21 Score=134.37 Aligned_cols=114 Identities=20% Similarity=0.366 Sum_probs=89.2
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
++...+.+.+|||+|++++..+|..+++++|++|||||+++..+++.+..|+..+..... ...|++|++||+|+.+.
T Consensus 39 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-- 116 (159)
T cd04150 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA-- 116 (159)
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--
Confidence 344567899999999999999999999999999999999999999999888877754322 46899999999998542
Q ss_pred CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
....+...... ...+.++++||++|+|++++|++|.+
T Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 117 MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 23333222111 12345789999999999999999864
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.86 E-value=4.7e-20 Score=131.79 Aligned_cols=125 Identities=36% Similarity=0.552 Sum_probs=108.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..++..++++++|||.++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus 42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 42 IRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred EEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 45677788899999999999999999999999999999999999999999999888876543 57899999999999765
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
..+...+...++..++.+++++||+++.|+.++|.++.+.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5666666777777788899999999999999999999998876543
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=2.4e-20 Score=135.69 Aligned_cols=121 Identities=24% Similarity=0.356 Sum_probs=101.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+++||++|+..+..++..++.++|++|||||+++..+++.+..|+..+..... .++|+++++||+|+..
T Consensus 40 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 40 YEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred EEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 45677788999999999999999999999999999999999999999999999988877654 5799999999999854
Q ss_pred CCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
...+.......... ..+.+++++||++|.|++++|+++.+.+.
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 34444444443333 44678999999999999999999998775
No 102
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=5.5e-21 Score=135.75 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=99.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+... .++|+++|+||+|+.+..
T Consensus 47 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 47 VEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred EEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccc
Confidence 467888889999999999999999999999999999999999999999988888765332 468999999999996544
Q ss_pred CCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.....+...++..+++. ++++||+++.|++++|+.+.+.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 125 QRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 33334455667777774 799999999999999999998775
No 103
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=3.5e-20 Score=129.34 Aligned_cols=120 Identities=42% Similarity=0.682 Sum_probs=107.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++||++|+..+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus 40 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 40 IVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 45677788999999999999999999999999999999999999999999999988887764 57999999999999765
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+..+.+..++...+.+++++||+++.|++++|++|.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 120 RQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 66777888888888889999999999999999999998753
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1.5e-20 Score=135.08 Aligned_cols=119 Identities=27% Similarity=0.401 Sum_probs=92.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.+++|||+|+++++.+|..+++++|++|||||+++..++..+..++..+.... ...+|++|++||.|+.+.
T Consensus 56 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-- 133 (182)
T PTZ00133 56 VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA-- 133 (182)
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--
Confidence 44556789999999999999999999999999999999999999998888777765432 146899999999998542
Q ss_pred CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
....+...... ...+.++++||++|+|+.++|++|.+.+.+.
T Consensus 134 ~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 134 MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 23333322211 1123567899999999999999999877664
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=3.5e-20 Score=128.60 Aligned_cols=117 Identities=63% Similarity=0.994 Sum_probs=104.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+||++|+..+...+..+++++|++++|||+++++++..+..|+..+......+.|+++++||+|+....
T Consensus 42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 42 IEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 34566788999999999999999999999999999999999999999999999998887754578999999999996455
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
....++...++...+++++++||+++.|++++|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 6677888888888899999999999999999999885
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=2.3e-20 Score=134.15 Aligned_cols=121 Identities=26% Similarity=0.387 Sum_probs=97.5
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~ 83 (165)
++..+.+.+|||+|++++..+|+.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+.. ..
T Consensus 48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~ 125 (183)
T cd04152 48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--AL 125 (183)
T ss_pred CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cC
Confidence 34678899999999999999999999999999999999999999988888887765433 5789999999999853 23
Q ss_pred CHHHHHHHHH--Hc----CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 84 STEEGEQFAK--EH----GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 84 ~~~~~~~~~~--~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..++...+.. .. +++++++||++|+|++++|++|.+.+.++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Confidence 4444443332 11 24688999999999999999999998765544
No 107
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.85 E-value=9.7e-20 Score=129.43 Aligned_cols=119 Identities=32% Similarity=0.602 Sum_probs=99.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|+++|..++..++.++|++++|||+++..+++.+. .|+..+.... .+.|+++++||+|+...
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 42 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred EEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccC
Confidence 467888899999999999999999988999999999999999999998885 4777766543 57899999999998532
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+...+.+.++...+. ++++|||++|.|++++|++|.+.+
T Consensus 121 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 121 EHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 22345666777777764 699999999999999999998654
No 108
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.84 E-value=1.2e-19 Score=130.82 Aligned_cols=121 Identities=31% Similarity=0.592 Sum_probs=102.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+.+|||+|++.+....+.++..+|+++++||+++..+++.+. .|+..+.... .+.|+++|+||+|+..
T Consensus 42 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (187)
T cd04129 42 CRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQD 120 (187)
T ss_pred EEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhC
Confidence 356778888999999999998888888899999999999999999999987 5888887654 4699999999999843
Q ss_pred ---------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 80 ---------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
...+...+...++...+. +++++||++|.|++++|+++.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 121 AVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 233455677778888885 79999999999999999999987754
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=4.7e-20 Score=131.17 Aligned_cols=110 Identities=25% Similarity=0.342 Sum_probs=90.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.+|||+|++.++.+|..+++++|++++|||+++..++.....|+..+..... .+.|+++|+||+|+.+.. ..+
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~ 134 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHH
Confidence 46789999999999999999999999999999999999999988888877754322 579999999999986432 444
Q ss_pred HHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 87 EGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 87 ~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
+...+.. ..+++++++||++|.|++++|+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 4444432 23567999999999999999999864
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=2.7e-19 Score=126.43 Aligned_cols=120 Identities=28% Similarity=0.359 Sum_probs=95.6
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..
T Consensus 41 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 41 DVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGS 119 (166)
T ss_pred eecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccc
Confidence 45677889999999999998888888899999999999999999999875 5777776654 478999999999996544
Q ss_pred CCC--HHHHHHHHHHc-C-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVS--TEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~--~~~~~~~~~~~-~-~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
... ......++..+ + .+++++||+++.|++++|+.+.+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 120 SQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred chhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 321 22333333333 2 369999999999999999999987754
No 111
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=4.5e-20 Score=130.78 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=90.2
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~ 83 (165)
+...+.+++||++|+++++.+|..+++++|++|||||+++..++.++..|+..+..... .++|+++|+||+|+....
T Consensus 39 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-- 116 (167)
T cd04161 39 RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL-- 116 (167)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--
Confidence 34467899999999999999999999999999999999999999999999988876533 578999999999996543
Q ss_pred CHHHHH------HHHHHcC--CeEEEecCCCC------CCHHHHHHHHHH
Q 031132 84 STEEGE------QFAKEHG--LIFMEASAKTA------QNVEEAFIKTAA 119 (165)
Q Consensus 84 ~~~~~~------~~~~~~~--~~~~~vSa~~~------~~i~~l~~~l~~ 119 (165)
+..+.. .++...+ ++++++||++| .|+.+.|+||..
T Consensus 117 ~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 117 LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 222211 1222223 45778999998 899999999974
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=1.2e-19 Score=127.18 Aligned_cols=113 Identities=20% Similarity=0.326 Sum_probs=88.9
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~ 81 (165)
+...+.+++|||+|++++..+|..+++++|++|||+|+++..++..+..|+..+.... ..++|+++|+||+|+....
T Consensus 41 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 120 (162)
T cd04157 41 EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL 120 (162)
T ss_pred EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC
Confidence 3456789999999999999999999999999999999999999988888888775542 1479999999999985432
Q ss_pred CCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 82 ~~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
...+...... ...++++++||++|.|++++|++|.+
T Consensus 121 --~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 --TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred --CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 2232222211 11345899999999999999999865
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=3.9e-20 Score=129.67 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=87.9
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.+++|||+|+++++.+|+.+++.+|++++|+|+++..++.....++..+.+.. ..+.|+++++||+|+.+..
T Consensus 38 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~- 116 (158)
T cd04151 38 VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL- 116 (158)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-
Confidence 44556789999999999999999999999999999999999888877777666554322 2468999999999985432
Q ss_pred CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
...+...... ..+.+++++||++|.|++++|++|.+
T Consensus 117 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 -SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 2223222111 12346999999999999999999865
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.83 E-value=1.2e-19 Score=129.71 Aligned_cols=113 Identities=31% Similarity=0.490 Sum_probs=94.7
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
.++.+.+||.+|+..++..|+.|++++|++|||+|+++...+.+....+..+..... .+.|++|++||+|+.+ ..+.
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~ 133 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSE 133 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTH
T ss_pred CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchh
Confidence 446789999999999999999999999999999999999999999998888876543 6799999999999854 3555
Q ss_pred HHHHHHHH------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 86 EEGEQFAK------EHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 86 ~~~~~~~~------~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+++..... ...+.++.+||.+|+|+.+.|+||.++|
T Consensus 134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 55554332 1244589999999999999999999876
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.83 E-value=3.5e-19 Score=125.84 Aligned_cols=117 Identities=33% Similarity=0.635 Sum_probs=97.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++...+..+++.+|++++|||+++..++..... |+..+.... .+.|+++|+||+|+...
T Consensus 41 ~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 41 VTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDD 119 (171)
T ss_pred EEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhc
Confidence 3567888999999999999998888899999999999999999998887655 666665544 47999999999998543
Q ss_pred C-----------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132 81 R-----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 81 ~-----------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
. .+...+...+....+. +++++||++|+|+.++|++|++
T Consensus 120 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 120 ENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 3 2346667777777887 8999999999999999999875
No 116
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.83 E-value=4.1e-19 Score=122.17 Aligned_cols=121 Identities=26% Similarity=0.411 Sum_probs=101.8
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~ 81 (165)
++..+.+++++||++||...++.|+.||..+|++|+|||.+|+..+++-...+..+..-.. .+.|++|++||+|+..
T Consensus 54 tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~-- 131 (185)
T KOG0073|consen 54 TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG-- 131 (185)
T ss_pred EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--
Confidence 4567788999999999999999999999999999999999999999988888877765333 6789999999999963
Q ss_pred CCCHHHHH------HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGE------QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~------~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.++.+.+. .+++...++.+.|||.+|+++.+.|+|++..++.+.
T Consensus 132 ~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 132 ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHHh
Confidence 34443332 344566788999999999999999999999998854
No 117
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.7e-20 Score=128.27 Aligned_cols=119 Identities=23% Similarity=0.354 Sum_probs=99.3
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~ 81 (165)
++..+++.+++||.+||++++++|++|+++.+++|||+|.+|+..+.+++..+..+..... ...|+++++||.|+++
T Consensus 55 ~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~-- 132 (181)
T KOG0070|consen 55 TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG-- 132 (181)
T ss_pred EEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--
Confidence 3556688999999999999999999999999999999999999999999998888877765 6899999999999965
Q ss_pred CCCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.++..++...... ....+..++|.+|+|+.+.++++...+.+
T Consensus 133 als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 133 ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 3454444433222 23457788999999999999999988765
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=3.1e-19 Score=127.24 Aligned_cols=112 Identities=28% Similarity=0.386 Sum_probs=89.1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
...+.+.+|||+|++.+...|..+++++|+++||+|+++..++.....++..+..... .++|+++++||+|+.+ ...
T Consensus 56 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~ 133 (174)
T cd04153 56 YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMT 133 (174)
T ss_pred ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCC
Confidence 3457899999999999999999999999999999999999999888887777754432 4689999999999854 233
Q ss_pred HHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 85 TEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.++..... ...+++++++||++|+|++++|++|..
T Consensus 134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 33332221 123457899999999999999999864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=3.4e-19 Score=125.63 Aligned_cols=111 Identities=28% Similarity=0.424 Sum_probs=90.5
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
....+.+|||+|++.+..++..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+... ...
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~ 125 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSV 125 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCH
Confidence 356789999999999999999999999999999999998889888888887765432 57899999999998543 334
Q ss_pred HHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.+...+... .+++++++||++|+|+++++++|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 126 EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 444443322 2457999999999999999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=3.3e-19 Score=124.84 Aligned_cols=111 Identities=25% Similarity=0.412 Sum_probs=88.6
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
..+.+.+|||+|++.+..+|..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+... ...
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 119 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA 119 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence 356899999999999999999999999999999999999999998888887765432 57999999999998532 223
Q ss_pred HHHHHHH------HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFA------KEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~------~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.+..... ...+++++++||++|+|++++|++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 3332221 112456899999999999999998853
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=3.6e-19 Score=124.49 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=90.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
..+.+.+||++|++.+...+..+++++|++++|||++++.++.....|+..+..... .+.|+++++||+|+.... ..
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~ 118 (158)
T cd00878 41 KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SV 118 (158)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CH
Confidence 456899999999999999999999999999999999999999999888887766443 578999999999986433 23
Q ss_pred HHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
++...... ...++++++||++|.|++++|++|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 33333222 23457999999999999999999875
No 122
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=2e-20 Score=130.60 Aligned_cols=126 Identities=28% Similarity=0.485 Sum_probs=114.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+++.+|||+|+++|..+...||++|.+.++||+-+|..||+.+..|.+.+...+ ..+|.++|-||+||.+..+
T Consensus 63 ~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 63 KVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred HhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhh
Confidence 345555667789999999999999999999999999999999999999999999998887 5799999999999999889
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
+...++..+++.++..++.+|++...|+..+|..|.+.+.++..++-
T Consensus 142 ~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~ 188 (246)
T KOG4252|consen 142 MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSL 188 (246)
T ss_pred cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998888766643
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.7e-18 Score=124.76 Aligned_cols=111 Identities=27% Similarity=0.353 Sum_probs=91.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.+||++|+..+...|..+++++|++++|+|+++..++.....++..+..... .+.|+++++||+|+.. .+...
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~ 139 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEE 139 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHH
Confidence 36789999999999999999999999999999999999889888888887765433 5689999999999853 45556
Q ss_pred HHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 87 EGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 87 ~~~~~~~~----------------~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+.+.+... ..++++++||++|+|++++|++|.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 66555432 22458999999999999999999765
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=2.3e-18 Score=123.88 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=90.3
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+.+.+.+||++|+..++.+|..+++++|+++||+|++++.++.....++..+..... .+.|+++++||+|+.. .++.
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~ 136 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASE 136 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCH
Confidence 356789999999999999999999999999999999999999888888877654322 5789999999999853 3455
Q ss_pred HHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 86 EEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 86 ~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+++.....- ....++++||++|+|++++++||..+
T Consensus 137 ~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 137 DELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 554433211 12348999999999999999999865
No 125
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=3.5e-18 Score=121.79 Aligned_cols=111 Identities=27% Similarity=0.296 Sum_probs=86.5
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+++.+.++||||+|++++...+..+++++|++|+|||+++..+......|.... . .++|+++++||+|+.+.. .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~--~--~~~~iiiv~NK~Dl~~~~--~ 136 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL--E--NNLEIIPVINKIDLPSAD--P 136 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH--H--cCCCEEEEEECCCCCcCC--H
Confidence 667888999999999999999999999999999999999876665555444322 1 468999999999985421 2
Q ss_pred HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
......++..++++ ++++||++|+|++++|++|...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 22234455555653 89999999999999999998754
No 126
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=1.5e-17 Score=122.39 Aligned_cols=118 Identities=31% Similarity=0.610 Sum_probs=101.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
.+++.+.+.+|||+|++++..++..++..++++++|||+++..++..+..|+..+.... .+.|+++++||+|+.. ...
T Consensus 53 ~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~ 130 (215)
T PTZ00132 53 TNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQV 130 (215)
T ss_pred ECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccC
Confidence 47788999999999999999999999999999999999999999999999999887665 5789999999999853 233
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.... ..++...++.++++||++|.|+.++|.+|.+.+...
T Consensus 131 ~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 131 KARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred CHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 3333 345667788999999999999999999999988753
No 127
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.78 E-value=5.1e-18 Score=123.79 Aligned_cols=104 Identities=22% Similarity=0.425 Sum_probs=86.3
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-------------------CCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-------------------NAN 65 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-------------------~~~ 65 (165)
+++.+.+++|||+|+++|..++..+++++|++|+|||++++.|++.+..|+..+.... ..+
T Consensus 50 ~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (202)
T cd04102 50 EEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQ 129 (202)
T ss_pred CCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCC
Confidence 3578899999999999999999999999999999999999999999999999987642 136
Q ss_pred CeEEEEeeCCCCCCCCCCCHH----HHHHHHHHcCCeEEEecCCCCC
Q 031132 66 MTIMLIGNKCDLAHRRAVSTE----EGEQFAKEHGLIFMEASAKTAQ 108 (165)
Q Consensus 66 ~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~vSa~~~~ 108 (165)
+|++||+||.|+.+++.+... ....++.+.+++.++.++.++.
T Consensus 130 ~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 130 IPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred ceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 899999999999665444443 2445688899998888766443
No 128
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-17 Score=111.63 Aligned_cols=116 Identities=22% Similarity=0.405 Sum_probs=96.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+-++++.|.+||.+|+++.+++|++||.+..++|||+|+.+.+..+++++.+..+..... ...|++|.+||.|+++ .
T Consensus 56 VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A 133 (180)
T KOG0071|consen 56 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--A 133 (180)
T ss_pred EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--c
Confidence 446778899999999999999999999999999999999999999999998877766554 6789999999999965 3
Q ss_pred CCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+.+++.+.+- ..+.+.+++|.+|+|+.+.|.||...+
T Consensus 134 ~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 134 MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 466666554332 234578899999999999999997654
No 129
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.75 E-value=6.3e-18 Score=114.51 Aligned_cols=118 Identities=21% Similarity=0.338 Sum_probs=95.4
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~ 81 (165)
.+..+.+++.+||.+||.+++.+|+.|++.++++++|+|+++++.+...++.+..++.... .++|++|++||.|+++
T Consensus 59 k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~-- 136 (186)
T KOG0075|consen 59 KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG-- 136 (186)
T ss_pred EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--
Confidence 5677888999999999999999999999999999999999999888888888877765554 6899999999999854
Q ss_pred CCCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.++......- .....+.+|-+|++...|++-+.+||+++--
T Consensus 137 AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 137 ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 3333322211 1112345889999999999999999998753
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=4.2e-17 Score=113.17 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=87.3
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
..+.+.+||++|++.+..+|..+++.+|++++|+|+++..++.....|+..+..... .+.|+++++||+|+.+.. ..
T Consensus 42 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~ 119 (159)
T cd04159 42 GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SV 119 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CH
Confidence 347799999999999999999999999999999999999888888887777654332 578999999999986432 22
Q ss_pred HHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.+..... ....++++++||+++.|+++++++|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 2221111 112357899999999999999999865
No 131
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.74 E-value=5.4e-17 Score=110.73 Aligned_cols=126 Identities=24% Similarity=0.380 Sum_probs=112.5
Q ss_pred EEEEEEEeCCCchhh-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 8 PIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
.=.+.|+||+|...+ ..+-++|+.-+|++++||+..+++||+.+..+...|.+... ..+|+++++||+|+.++.++..
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 346899999999887 66889999999999999999999999999888888888765 6899999999999988888899
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCC
Q 031132 86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 133 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~ 133 (165)
+.++.+++.-.+..++++|.+...+-+.|..+...+.....+..++-.
T Consensus 139 d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 139 DVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCcch
Confidence 999999999999999999999999999999999988877777666554
No 132
>PLN00023 GTP-binding protein; Provisional
Probab=99.72 E-value=2.7e-16 Score=120.95 Aligned_cols=121 Identities=24% Similarity=0.480 Sum_probs=93.6
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCeEEEEee
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGN 73 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~n 73 (165)
++.+.++||||+|+++|+.+++.+++++|++|+|||+++..+++.+..|+..+..... .++|++||+|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 3578899999999999999999999999999999999999999999999999987631 2489999999
Q ss_pred CCCCCCCC---C---CCHHHHHHHHHHcCCe-E------E---------EecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 74 KCDLAHRR---A---VSTEEGEQFAKEHGLI-F------M---------EASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 74 K~Dl~~~~---~---~~~~~~~~~~~~~~~~-~------~---------~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
|+||.... . +..++++.+++..++. . . ...|+.+.-=++++....+.+++++.
T Consensus 160 K~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (334)
T PLN00023 160 KADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRY 234 (334)
T ss_pred CccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHh
Confidence 99996432 2 3567888999887742 1 1 12355544445666666666666544
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=1.5e-16 Score=112.25 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=79.4
Q ss_pred EEEEEEEEeCCCchhh----h-----hhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 7 KPIKLQIWDTAGQESF----R-----SITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~----~-----~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
+.+.+++|||+|+... + .........+|++++|+|+++..+ ++....|+..+.... .+.|+++++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEcc
Confidence 4578999999998421 0 111112234689999999998654 355566777765543 478999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
|+.....+.. ...+....+.+++++||++|.|++++|+++.+.+
T Consensus 124 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 9864433222 3444444567899999999999999999998875
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.71 E-value=3.7e-16 Score=110.76 Aligned_cols=107 Identities=24% Similarity=0.380 Sum_probs=84.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
...+.+||++|+..+...|..+++++|++++|+|+++..++.....++..+..... .++|+++++||+|+.... ...
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH
Confidence 45789999999999999999999999999999999998888888877776654432 568999999999985422 222
Q ss_pred HHHHHHHHcC--------CeEEEecCCCCCCHHHHHHHHHH
Q 031132 87 EGEQFAKEHG--------LIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 87 ~~~~~~~~~~--------~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
+. ....+ .+++++||++|+|++++|++|.+
T Consensus 135 ~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 135 EI---AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HH---HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 22 22222 24789999999999999999975
No 135
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8e-17 Score=111.94 Aligned_cols=115 Identities=29% Similarity=0.393 Sum_probs=94.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
+..+.|||.+||+..+++|..||..++++|+++|+++++.|++-...+..+..+-. .++|+++.+||.|+.+.. ...
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~ 145 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAA 145 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHH
Confidence 55789999999999999999999999999999999999999888887777765554 789999999999996533 333
Q ss_pred HHHHH---HHH---cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 87 EGEQF---AKE---HGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 87 ~~~~~---~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
++... +.. ..+++.++||.+|+||++.+.|++..+.+.
T Consensus 146 El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 146 ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 33322 222 246799999999999999999999887665
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=6.6e-16 Score=120.46 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=88.1
Q ss_pred EEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 79 (165)
..+.+||+||..+ ....+..+++.++++|+|+|+++..+++.+..|...+..+.. .++|+++|+||+|+..
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 3589999999742 223333456789999999999987788888889888876643 4689999999999865
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
...........++...+.+++++||++++|+++++++|.+.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 43333333444455566889999999999999999999987754
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=3.5e-16 Score=110.39 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=82.8
Q ss_pred EEEEEEeCCCch----hhhhhhHhh---hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQE----SFRSITRSY---YRGAAGALLVYDITRR-ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~----~~~~~~~~~---~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~ 78 (165)
..+.+|||||.. .+..++..+ +..+|++++|+|+++. .+++.+..|...+..... .+.|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 478999999973 222233333 4469999999999998 788888888888766532 368999999999986
Q ss_pred CCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..... ......+... .+.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 54332 2333444444 36789999999999999999998864
No 138
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=4.4e-15 Score=101.30 Aligned_cols=115 Identities=55% Similarity=0.874 Sum_probs=90.0
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH-HhcCCCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR-QHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
..+....+.+||++|...+...+..+++.+|++++|+|+++..++.....|+.... .....+.|+++++||+|+.....
T Consensus 40 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 40 VDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred ECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 34567889999999999998888999999999999999999998888887733222 22226799999999999864433
Q ss_pred CCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132 83 VSTEE-GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
..... ..........+++++|+.++.|+++++++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 120 VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 22222 3344455578899999999999999999875
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=1.6e-15 Score=106.23 Aligned_cols=109 Identities=19% Similarity=0.092 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 85 (165)
...+.+|||+|++++......++.++|++++|+|+++... ......+..+... ...|+++++||+|+..... ...
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~ 126 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-PQTREHLEILELL--GIKRGLVVLTKADLVDEDWLELVE 126 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-HhHHHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHH
Confidence 4578999999999998777778899999999999987211 1111122222211 2248999999999854321 111
Q ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.+...+... .+.+++++||++++|++++++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 223333333 3578999999999999999998753
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=2.4e-15 Score=104.79 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred EEEEEEeCCCchhhhh------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS------ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~------~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||||+..+.. ++..++. ++|++++|+|+++..... .++..+.. .++|+++++||+|+...
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK 116 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc
Confidence 4689999999977653 4566665 999999999998854432 23333322 36899999999999654
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..+.. ....+....+.+++++||.++.|++++++++.+.
T Consensus 117 ~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 117 RGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 33332 2445666678899999999999999999998775
No 141
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.9e-16 Score=106.13 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=90.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+-+++..+++||.+|+-..++.|+.||.+.|++|+|+|.+|.....-....+..++.-.. ++.-+++++||.|... .
T Consensus 57 v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~ 134 (182)
T KOG0072|consen 57 VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--A 134 (182)
T ss_pred cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--h
Confidence 456788999999999999999999999999999999999998766555554444433322 5677899999999853 2
Q ss_pred CCHHHHHH-----HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQ-----FAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+...++.. ..+..-+.++++||.+|+|++.+++|+.+.+..+
T Consensus 135 ~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 135 LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 33333222 1222336799999999999999999999887643
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=1.2e-15 Score=110.57 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=76.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+.+.+|||+|+++|...+..+++++|++++|||+++.. +.....++..+.. .++|+++++||+|+.....
T Consensus 59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~ 134 (194)
T cd01891 59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARP 134 (194)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCH
Confidence 45666788999999999999999999999999999999998742 2223333333322 3689999999999854321
Q ss_pred -CCHHHHHHHHH-------HcCCeEEEecCCCCCCHHHH
Q 031132 83 -VSTEEGEQFAK-------EHGLIFMEASAKTAQNVEEA 113 (165)
Q Consensus 83 -~~~~~~~~~~~-------~~~~~~~~vSa~~~~~i~~l 113 (165)
....+...+.. ..+++++++||++|.|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 11223333332 23678999999999887443
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=1.8e-15 Score=104.11 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=73.9
Q ss_pred EEEeCCCch-----hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 12 QIWDTAGQE-----SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 12 ~l~Dt~G~~-----~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+|||+|+. .++.+.+ .++++|++++|||++++.++.. ..|... . ..|+++++||+|+.+ .....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~----~--~~p~ilv~NK~Dl~~-~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI----F--VKPVIGLVTKIDLAE-ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh----c--cCCeEEEEEeeccCC-cccCHH
Confidence 689999982 3444444 5899999999999999887654 233322 1 249999999999854 234455
Q ss_pred HHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHH
Q 031132 87 EGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 87 ~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~ 118 (165)
....++...+. +++++||++|.|++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 66666777776 799999999999999999874
No 144
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.64 E-value=4.6e-15 Score=123.48 Aligned_cols=112 Identities=24% Similarity=0.260 Sum_probs=87.4
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
++..+.+.||||||+.+|...+..+++.+|++|+|||+++..+......|...+. .+.|+++++||+|+.... .
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~ 139 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P 139 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence 5677899999999999999999999999999999999998766665555544332 368999999999985321 1
Q ss_pred HHHHHHHHHHcCC---eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGL---IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 85 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
......+...+++ .++++||++|.|+.++|++|.+.+.
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2223344445565 3899999999999999999987663
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=4e-15 Score=108.47 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=79.1
Q ss_pred EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.+.+|||+|... +...+ ..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+...
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 789999999732 22222 23678999999999999888877777776665544356899999999998543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
... .........+++++||+++.|+++++++|.+.+
T Consensus 169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 221 133344566799999999999999999987653
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.62 E-value=7.1e-15 Score=103.42 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=77.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-HH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~ 86 (165)
...+.+|||+|+..+..++...+..+|++++|+|+++..... ....+..+.. .++|+++++||+|+....... ..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~ 124 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence 567899999999999999999999999999999998743211 1112222222 468999999999985322100 01
Q ss_pred HHHHHHH----H--cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 87 EGEQFAK----E--HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 87 ~~~~~~~----~--~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
....+.. . ..++++++||++++|+.+++++|.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111111 1 1357999999999999999999987653
No 147
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.62 E-value=6e-15 Score=101.04 Aligned_cols=122 Identities=25% Similarity=0.477 Sum_probs=101.9
Q ss_pred CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC--
Q 031132 1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-- 78 (165)
Q Consensus 1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-- 78 (165)
++.+.|..+.+.+||.+|++++..+.+...+++-+++|+||.+.+.+++.+..|+...+......+|+ +|+||.|+-
T Consensus 61 t~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~ 139 (205)
T KOG1673|consen 61 TVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID 139 (205)
T ss_pred EEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc
Confidence 46788999999999999999999999999999999999999999999999999999988776445555 579999962
Q ss_pred --CCCC-CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 79 --HRRA-VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 79 --~~~~-~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+.+ .-..+.+.+++.++.+.+++|+..+.|+..+|.-++..+..
T Consensus 140 lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 140 LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence 1111 11234566788889999999999999999999988887764
No 148
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.62 E-value=2.1e-14 Score=99.03 Aligned_cols=116 Identities=35% Similarity=0.524 Sum_probs=88.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+||++|+.++..++..+++.++++++++|.... .++.... .|...+......+.|+++++||+|+..
T Consensus 43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 34566668899999999999999999999999999999999876 5565554 566555555433789999999999854
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
.. ........+......+++++||.++.|+.++|++|.
T Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 33 223333333333456799999999999999999863
No 149
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=1.4e-14 Score=112.97 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=82.8
Q ss_pred EEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D 76 (165)
..+.+|||||..+ ....+...+++++++++|+|+++. ..++.+..|...+..... .+.|++||+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 5689999999843 222233345679999999999976 567777777777765532 4689999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+..... .....+.+....+.+++++||++++|+++++++|.+.+
T Consensus 285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 864322 22334445556678899999999999999999998754
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=6.4e-15 Score=104.32 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=80.6
Q ss_pred EEEEEEEeCCCchh----hhhhh---HhhhcCCcEEEEEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCe
Q 031132 8 PIKLQIWDTAGQES----FRSIT---RSYYRGAAGALLVYDITRR------ETFNHLASWLEDARQHAN-------ANMT 67 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----~~~~~---~~~~~~ad~vi~v~D~~~~------~s~~~~~~~~~~i~~~~~-------~~~p 67 (165)
...+.+|||||... .+.++ ..+++++|++++|+|+++. .++.++..|...+..... .+.|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 45689999999732 22222 3457789999999999987 567777777777654431 3689
Q ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 68 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+++++||+|+..................+.+++++||+++.|++++++++...
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999999986443332222223333446679999999999999999988764
No 151
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=8e-15 Score=107.11 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=75.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 86 (165)
..+.||||||++++...+...+.++|++++|+|++++.........+..+... ...|+++++||+|+...... ..+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHH
Confidence 57899999999998887777788999999999998742111112222222222 22478999999998542211 112
Q ss_pred HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 87 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 87 ~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+.+... .+++++++||++|+|++++|+.|.+.+
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 22333332 256799999999999999999887643
No 152
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.60 E-value=4.4e-16 Score=109.49 Aligned_cols=120 Identities=35% Similarity=0.619 Sum_probs=100.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~ 83 (165)
.+++++||++||+++..|..-|++.+.+.++|||++...+|+....|.+.+..-.. .++|+++.+||||.......
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~ 153 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN 153 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence 34678999999999999999999999999999999999999999999998864432 46889999999998532211
Q ss_pred -CHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 84 -STEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 84 -~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
...+..++..++|+. ++++|++.+.|+.|+-..+++.++-...+
T Consensus 154 ~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 154 EATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred hhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccC
Confidence 235666778888887 99999999999999999999988765543
No 153
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.59 E-value=9.7e-14 Score=101.96 Aligned_cols=122 Identities=39% Similarity=0.592 Sum_probs=93.2
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC---
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--- 81 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--- 81 (165)
+..+.+.+|||+|+++++.+++.|+.++++++++||.++ ..+++....|+..+........|+++++||+|+....
T Consensus 51 ~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 51 RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 337789999999999999999999999999999999999 4555666678878777653468999999999996543
Q ss_pred ---------CCCHHHHHHHHHHc---CCeEEEecCC--CCCCHHHHHHHHHHHHHHHHhc
Q 031132 82 ---------AVSTEEGEQFAKEH---GLIFMEASAK--TAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 82 ---------~~~~~~~~~~~~~~---~~~~~~vSa~--~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.............. ...++++|+. .+.++.++|..+...+......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 131 EEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred HHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 12222222222211 3338999999 9999999999999998765433
No 154
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=3.1e-14 Score=118.68 Aligned_cols=113 Identities=24% Similarity=0.253 Sum_probs=86.0
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+++.+.++||||||+.+|...+..+++.+|++|+|+|+++.........|.... . .+.|+++|+||+|+.... .
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~--~~lpiIvViNKiDl~~a~--~ 143 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E--NDLEIIPVLNKIDLPAAD--P 143 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--H--CCCCEEEEEECCCCCccc--H
Confidence 566889999999999999999999999999999999999875554444443322 1 468999999999985422 1
Q ss_pred HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
......+....++. ++++||++|.|+.+++++|.+.+..
T Consensus 144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22223344445554 8999999999999999999887654
No 155
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.57 E-value=3e-14 Score=100.22 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=75.6
Q ss_pred EEeCCCc-----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 13 IWDTAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 13 l~Dt~G~-----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+|||||+ +.++.+.. .++.+|++++|+|+++..++. ..|+..+ . .+.|+++++||+|+.. ...+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~-~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALIT-TLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA 110 (158)
T ss_pred cccCCccccCCHHHHHHHHH-HHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence 6999997 33333333 478999999999999876542 2333332 1 3578999999999853 23455
Q ss_pred HHHHHHHcCC--eEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 88 GEQFAKEHGL--IFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 88 ~~~~~~~~~~--~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
...++...++ +++++||++|+|++++|+.+.+.+.....
T Consensus 111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence 6666767775 89999999999999999988776655443
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=2.9e-14 Score=98.98 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=73.6
Q ss_pred EEEEEEeCCCchhhhh--------hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||||...+.. .+...++.+|++++|+|+++..+.... .+...+. . .+.|+++++||+|+...
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~-~--~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLR-K--SKKPVILVVNKVDNIKE 120 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHH-h--cCCCEEEEEECcccCCh
Confidence 5689999999877443 345668899999999999875443322 1222222 2 35899999999998643
Q ss_pred CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
... .......++ +++++|++++.|++++|+++.++
T Consensus 121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 211 222334566 68999999999999999999875
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.56 E-value=7e-14 Score=99.98 Aligned_cols=110 Identities=23% Similarity=0.201 Sum_probs=80.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--H
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~ 85 (165)
...+.||||+|...+...+..+++.+|++++|+|+++..+.. ...++..+.. .+.|+++++||+|+....... .
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence 467899999999999999999999999999999998765433 2233333332 468999999999986422211 1
Q ss_pred HHHHHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 86 EEGEQFAKE--------------HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 86 ~~~~~~~~~--------------~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
......... ...+++++||++|.|+.+++.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 222233322 246799999999999999999998875
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=97.11 Aligned_cols=107 Identities=22% Similarity=0.305 Sum_probs=89.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
..+.|++||||+++.-+|+.+++++.++|+++|.+.+..+ .....+..+... ..+|++|++||.||.. ..+.+++
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~--~~ip~vVa~NK~DL~~--a~ppe~i 142 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR--NPIPVVVAINKQDLFD--ALPPEKI 142 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc--cCCCEEEEeeccccCC--CCCHHHH
Confidence 4688999999999999999999999999999999998888 455555555444 2399999999999965 4577777
Q ss_pred HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+.+.... ..++++++|..+++..+.++.+...
T Consensus 143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 7766554 7889999999999999999888766
No 159
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.55 E-value=1.1e-14 Score=98.27 Aligned_cols=111 Identities=21% Similarity=0.352 Sum_probs=86.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+.+.+||++|+...+..|..||.+.|++|||+|.+|...|+++...+.++..-.. ..+|+++.+||.|+.-...+....
T Consensus 62 f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia 141 (185)
T KOG0074|consen 62 FHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIA 141 (185)
T ss_pred EEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHH
Confidence 7899999999999999999999999999999999999999999888877754443 679999999999985322111111
Q ss_pred HH-HH--HHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 88 GE-QF--AKEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 88 ~~-~~--~~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.. .+ .....+++.++||..++|+....+|+..
T Consensus 142 ~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 142 LKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred HhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 00 01 1122456889999999999998888764
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.55 E-value=6.8e-14 Score=101.70 Aligned_cols=107 Identities=22% Similarity=0.210 Sum_probs=72.8
Q ss_pred EEEEEeCCC-----------chhhhhhhHhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCC
Q 031132 10 KLQIWDTAG-----------QESFRSITRSYYR----GAAGALLVYDITRRETF-N---------HLASWLEDARQHANA 64 (165)
Q Consensus 10 ~~~l~Dt~G-----------~~~~~~~~~~~~~----~ad~vi~v~D~~~~~s~-~---------~~~~~~~~i~~~~~~ 64 (165)
.+.+|||+| +++++.++..++. .++++++|+|+++...+ + ....++..+. . .
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-E--L 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-H--c
Confidence 478999999 5777777777764 35789999998653221 0 0011122221 1 4
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCC---------eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL---------IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
++|+++|+||+|+.+.. ......+...+++ +++++||++| |+++++++|.+.+..
T Consensus 130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 78999999999985432 2344445555554 4799999999 999999999887643
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.55 E-value=6.3e-14 Score=101.35 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=76.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-- 83 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-- 83 (165)
++.+.+.+|||||+..+..........+|++++|+|+++.........+. +... .+.|+++++||+|+......
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence 44678999999999765333334456789999999998754333322221 1222 35799999999998532211
Q ss_pred CHHHHHHHHH-------HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 84 STEEGEQFAK-------EHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 84 ~~~~~~~~~~-------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..++...... ..+++++++||++|+|+++++++|..+|..
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1122221111 135789999999999999999999988764
No 162
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.54 E-value=1.5e-13 Score=107.94 Aligned_cols=105 Identities=21% Similarity=0.163 Sum_probs=76.0
Q ss_pred EEEEEEeCCCc---------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
..+.+|||+|. +.|...+. .+.+||++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 46899999998 22333333 478999999999999988777776666555544334789999999999853
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.. ..... .....+++++||++|.|+++++++|.+.
T Consensus 316 ~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 EP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 21 11111 1223468999999999999999988754
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=7.4e-14 Score=113.84 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=74.0
Q ss_pred EEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 10 KLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 10 ~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+|||+|.+. +...+..+++.+|++|||||+++..++.. ..+...+. . .++|+++|+||+|+....
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~-~--~~~piilV~NK~Dl~~~~ 162 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLR-R--SGKPVILAANKVDDERGE 162 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-H--cCCCEEEEEECccCCccc
Confidence 478999999762 44456678899999999999998755432 22233332 2 478999999999985321
Q ss_pred CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+....+ ..++ ..+++||++|.|+.++|+++...+.+
T Consensus 163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1111112 2344 35799999999999999999988754
No 164
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.51 E-value=1e-13 Score=104.06 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=77.2
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 031132 20 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 98 (165)
Q Consensus 20 ~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 98 (165)
+++..+.+.+++++|++++|||++++. +++.+..|+..+.. .++|+++|+||+||.....+..+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 678888999999999999999999877 89999999876643 4689999999999964443333333333 457899
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 031132 99 FMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 99 ~~~vSa~~~~~i~~l~~~l~ 118 (165)
++++||++|+|++++|+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999998875
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=6.7e-13 Score=106.34 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=82.9
Q ss_pred EEEEEEEeCCCchh----hhhhhHhh---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132 8 PIKLQIWDTAGQES----FRSITRSY---YRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKC 75 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----~~~~~~~~---~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~ 75 (165)
...+.|||+||... ...+...+ +++++++|+|+|+++. ..++....|...+..+.. .++|.+||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 34689999999743 22233333 5679999999999864 556667777777766532 468999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
|+.. .......+...++.+++++||++++|+++++++|.+.+.+
T Consensus 285 DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 285 DLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9842 2334455566666789999999999999999999887755
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=2.3e-13 Score=110.99 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=77.1
Q ss_pred eeCCEEEEEEEEeCCCc----------hhhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~----------~~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.+++.. +.+|||+|. +.|..+. ..+++++|++++|+|+++..++.... ++..+.. .+.|+++|
T Consensus 255 ~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV 328 (472)
T PRK03003 255 ELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLA 328 (472)
T ss_pred EECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence 455554 579999995 3333333 34678999999999999987776653 3333322 46899999
Q ss_pred eeCCCCCCCCCCC--HHHHHH-HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRRAVS--TEEGEQ-FAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 72 ~nK~Dl~~~~~~~--~~~~~~-~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+||+|+....... ..+... +......+++++||++|.|++++|+.+.+.+.
T Consensus 329 ~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 329 FNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999996422110 111111 11112467999999999999999999987664
No 167
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.50 E-value=2.1e-13 Score=110.10 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=79.3
Q ss_pred EEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||+|+..+... ...+++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN 325 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence 45789999998654332 24578899999999999988776654 5554432 36899999999998532
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
....+....+.+++++||++ .|++++|+.+.+.+.+..
T Consensus 326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 12334556678899999997 699999999999887654
No 168
>PRK15494 era GTPase Era; Provisional
Probab=99.50 E-value=3.2e-13 Score=105.80 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=71.0
Q ss_pred EEEEEEeCCCchh-hhhhh-------HhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQES-FRSIT-------RSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-~~~~~-------~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.++.||||||... +..+. ...+.++|+++||+|.++. +..... |+..+.. .+.|+++|+||+|+..
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIES 174 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCcc
Confidence 4679999999843 22211 2347899999999998763 333333 3444332 2467788999999853
Q ss_pred CCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
. ...+...++...+ ..++++||++|.|++++|++|...+
T Consensus 175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 2 2334444444443 5699999999999999999887654
No 169
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.50 E-value=2.9e-13 Score=102.94 Aligned_cols=107 Identities=18% Similarity=0.084 Sum_probs=73.8
Q ss_pred EEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.++.||||||.... .......++++|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+...
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 46899999997532 112345678999999999999876554 223333322 46899999999998532
Q ss_pred CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.. .......+....++ +++++||++|.|+++++++|.+.+
T Consensus 123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 21 12223333333444 699999999999999999887764
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.49 E-value=4.1e-13 Score=111.57 Aligned_cols=103 Identities=23% Similarity=0.235 Sum_probs=74.8
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 89 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 89 (165)
.+.||||||++.|..++...+..+|++++|||+++...... ...+..+. ..++|+++++||+|+.+. ..+...
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~ 208 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHAK---AANVPIIVAINKIDKPEA---NPDRVK 208 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHHH---HcCCCEEEEEECcccccC---CHHHHH
Confidence 68899999999999999999999999999999987422111 11122211 147899999999998532 233333
Q ss_pred HHHHHc-------C--CeEEEecCCCCCCHHHHHHHHHH
Q 031132 90 QFAKEH-------G--LIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 90 ~~~~~~-------~--~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
..+... + .+++++||++|+|+.++|+++..
T Consensus 209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 332222 2 46999999999999999999874
No 171
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=5.5e-13 Score=112.73 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=79.1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+....+.||||||++.|..++...+..+|++|+|+|+++....... ..+..+. ..++|+++++||+|+.... .
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~-E~I~~~k---~~~iPiIVViNKiDl~~~~---~ 364 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTI-EAINYIQ---AANVPIIVAINKIDKANAN---T 364 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhH-HHHHHHH---hcCceEEEEEECCCccccC---H
Confidence 3457899999999999999999999999999999999874322211 1122221 1478999999999986421 2
Q ss_pred HHHHHH-------HHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 86 EEGEQF-------AKEHG--LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 86 ~~~~~~-------~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...... ...++ ++++++||++|.|+.+++++|....
T Consensus 365 e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 365 ERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 222221 22233 6799999999999999999987753
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.49 E-value=1.5e-13 Score=111.30 Aligned_cols=101 Identities=25% Similarity=0.243 Sum_probs=76.0
Q ss_pred EEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||+|.+.+... ...+++++|++++|||++++.+++....|.. ..+.|+++|+||+|+...
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence 46899999998754332 2346889999999999998877765433332 246899999999999543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.... ...+.+++++||++|.|+++++++|.+.+..
T Consensus 337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2211 2345679999999999999999999987754
No 173
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.48 E-value=4.4e-13 Score=92.88 Aligned_cols=101 Identities=24% Similarity=0.202 Sum_probs=74.5
Q ss_pred EEEEEEEeCCCchhhhh--------hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...+.+|||+|...+.. .....+.++|++++|+|++++.+......+.. ....|+++++||+|+..
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence 45689999999754321 22346779999999999998766655543332 24689999999999864
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.... .....+.+++++||+++.|+.+++++|.+.+
T Consensus 122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3322 2334467899999999999999999987753
No 174
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.47 E-value=3.2e-13 Score=112.52 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=77.7
Q ss_pred EEEEEEeCCCchhhhhh------hHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~------~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+++|||+|+.++... ++.++ ..+|++++|+|+++.+. ...+...+. ..+.|+++++||+|+.+.
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEK 114 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHh
Confidence 35789999999776442 44444 37899999999987432 222222222 247899999999998544
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+. .+.+.+.+..+++++++||++|+|++++++++.+..
T Consensus 115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4443 345667778899999999999999999999998753
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.47 E-value=7.7e-13 Score=106.60 Aligned_cols=109 Identities=24% Similarity=0.162 Sum_probs=74.0
Q ss_pred EEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 10 KLQIWDTAGQESFRSI-----------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~-----------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.+|||+|..++... ...+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccC
Confidence 6889999997543221 134688999999999999876655442 2332222 468999999999986
Q ss_pred CCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 79 ~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
. .......... +... .+++++++||++|.|++++|+++......
T Consensus 297 ~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 297 K-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred C-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 1111122221 1112 24689999999999999999999886543
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.46 E-value=7.4e-13 Score=112.76 Aligned_cols=105 Identities=23% Similarity=0.260 Sum_probs=75.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
..+.||||||++.|..++...+..+|++|+|||+++...-.. ...+..+. ..++|++|++||+|+... .....
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT-~e~i~~a~---~~~vPiIVviNKiDl~~a---~~e~V 409 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT-IEAINHAK---AAGVPIIVAINKIDKPGA---NPDRV 409 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH-HHHHHHHH---hcCCcEEEEEECcccccc---CHHHH
Confidence 468899999999999999999999999999999987421111 11112211 247899999999999542 12222
Q ss_pred HH-------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHH
Q 031132 89 EQ-------FAKEHG--LIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 89 ~~-------~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.. ++..++ ++++++||++|.|+.++|++|...
T Consensus 410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 11 122333 679999999999999999998764
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=1.6e-12 Score=105.73 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=78.7
Q ss_pred EEEEEEEeCCCchh----hhhh---hHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-----------CCC
Q 031132 8 PIKLQIWDTAGQES----FRSI---TRSYYRGAAGALLVYDITRR----ETFNHLASWLEDARQHA-----------NAN 65 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----~~~~---~~~~~~~ad~vi~v~D~~~~----~s~~~~~~~~~~i~~~~-----------~~~ 65 (165)
...|.||||||... ...+ ...+++++|++|+|+|+++. ..+..+..+...+..+. ..+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 35789999999632 1111 22346789999999999752 23444444444443332 146
Q ss_pred CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.|.+||+||+|+.+.... .+.........+++++++||++++|+++++.+|.+.+....
T Consensus 285 kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 285 RPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 899999999998643222 12222333455789999999999999999999998876643
No 178
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.45 E-value=2e-12 Score=107.42 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=74.7
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC---
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--- 83 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--- 83 (165)
.+.||||||++.|..++..+++.+|++++|+|+++ +.+++.+. .+ .. .++|+++++||+|+......
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~--~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM--YKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH--cCCCEEEEEECCCccchhhhccC
Confidence 38899999999999999999999999999999987 33443332 12 12 46899999999998532100
Q ss_pred ---------CHHHH------------HHHHH------------Hc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 84 ---------STEEG------------EQFAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 84 ---------~~~~~------------~~~~~------------~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..... ..+.. .+ .++++++||++|+|+++++.+|.....
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00000 01111 11 357999999999999999998876443
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=1.7e-12 Score=104.88 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=72.5
Q ss_pred EEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
..+.+|||+|... +......++..+|++|||+|+++..+. ..+..|+.. .+.|+++++||+|+.
T Consensus 49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~ 122 (435)
T PRK00093 49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP 122 (435)
T ss_pred cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc
Confidence 6789999999976 333456678899999999999875433 233333332 368999999999974
Q ss_pred CCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~ 119 (165)
.. ......+ ..+++. ++++||.+|.|+.++++.+..
T Consensus 123 ~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 123 DE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred cc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 31 1222222 345664 899999999999999999887
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.44 E-value=1.6e-12 Score=108.22 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCCC-
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV- 83 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~- 83 (165)
..+.|||+||+++|...+...+.++|++++|+|+++. .+.+.+ ..+ .. .++| +++++||+|+.+...+
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il-~~--lgi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVL-DL--LGIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHH-HH--cCCCeEEEEEECCCCCCHHHHH
Confidence 6789999999999988888889999999999999883 333322 222 22 3577 9999999998643221
Q ss_pred -CHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 84 -STEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 84 -~~~~~~~~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
...+...+.... +++++++||++|+|+++++..+...+-.
T Consensus 123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 122344444443 4679999999999999999988765543
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.44 E-value=1.8e-12 Score=93.46 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=77.8
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-CC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~ 84 (165)
.....+.|+||||+..|.......+..+|++|+|+|+.+..... ....+..+.. .++|+++++||+|+..... ..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHH
Confidence 34557899999999999888888899999999999998764332 2223333322 4688999999999862110 01
Q ss_pred HHHHH-HHHHHc------CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 85 TEEGE-QFAKEH------GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 85 ~~~~~-~~~~~~------~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.++.. .+.+.. .++++++||.+|.|+.++++.|.+.+
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 11122 232332 25799999999999999999988764
No 182
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.44 E-value=8.1e-13 Score=88.10 Aligned_cols=73 Identities=36% Similarity=0.661 Sum_probs=60.4
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHH---HHHHHHhcCCCCeEEEEeeCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~---~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+....+++||++|++.+...+...+.++|++++|||++++.+++.+..+ +..+.... .++|++||+||.|
T Consensus 44 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 44 VVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 4566676799999999999998888889999999999999999999887554 55555433 5699999999998
No 183
>PRK11058 GTPase HflX; Provisional
Probab=99.44 E-value=2.9e-12 Score=103.05 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=76.9
Q ss_pred EEEEEeCCCchhh--hhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 10 KLQIWDTAGQESF--RSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 10 ~~~l~Dt~G~~~~--~~~~~------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+|||+|..+. ..++. ..++.||++++|+|++++.+++.+..|...+......+.|+++|+||+|+....
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 5789999998432 22333 336899999999999998777776555554444333468999999999985321
Q ss_pred CCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
. .... ....+.+ ++++||++|.|+++++++|.+.+..
T Consensus 326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1 1111 1123555 5889999999999999999988754
No 184
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.3e-13 Score=97.32 Aligned_cols=114 Identities=31% Similarity=0.556 Sum_probs=96.9
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
+.+.+..|||+|++.+..+...|+-.+.+.|++||++...++..+..|...+.+.+ .++|+++.+||.|..+.. ...
T Consensus 57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~ 133 (216)
T KOG0096|consen 57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKA 133 (216)
T ss_pred CcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--ccc
Confidence 36899999999999999999999999999999999999999999999999999888 579999999999985432 122
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+.-.+....++.++++||+.+.|....|-++...+..
T Consensus 134 k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 134 KPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence 2233445567899999999999999999999887654
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.43 E-value=1.4e-12 Score=89.81 Aligned_cols=109 Identities=21% Similarity=0.132 Sum_probs=76.8
Q ss_pred EEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
...+.+|||+|..... ..+..++..+|++++|+|+++........ +...... .+.|+++++||.|+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCCh
Confidence 3468999999986543 34456789999999999999876665554 2222222 47899999999998643
Q ss_pred CCCCHHH---HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEE---GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
....... ........+.+++++||.++.|+.++++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 3222111 112222345779999999999999999998865
No 186
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.43 E-value=1e-12 Score=106.00 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=74.0
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
++...+.+.||||+|+++|.......+..+|++++|+|+++..++. ....++. +.... ...|+++++||+|+.+..
T Consensus 80 ~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~ 157 (426)
T TIGR00483 80 FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYD 157 (426)
T ss_pred EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCcc
Confidence 4555678999999999988766666678999999999999874321 1111111 22222 235789999999985321
Q ss_pred C----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHH
Q 031132 82 A----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAF 114 (165)
Q Consensus 82 ~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~ 114 (165)
. ....++..++...+ ++++++||++|+|+.+.+
T Consensus 158 ~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 158 EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1 11234445555555 569999999999998754
No 187
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.42 E-value=1.4e-12 Score=108.64 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=84.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+.+.+|||||+.+|...+..+++.+|++++|+|+++.. ......|+..+.. .++|+++++||+|+.....
T Consensus 58 ~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~ 133 (594)
T TIGR01394 58 AIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARP 133 (594)
T ss_pred EEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCH
Confidence 45666788999999999999999999999999999999998743 3444555555543 3689999999999854321
Q ss_pred C-CHHHHHHHHH-------HcCCeEEEecCCCCC----------CHHHHHHHHHHHHH
Q 031132 83 V-STEEGEQFAK-------EHGLIFMEASAKTAQ----------NVEEAFIKTAATIY 122 (165)
Q Consensus 83 ~-~~~~~~~~~~-------~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~ 122 (165)
. ...+...+.. +..++++++||++|. |+..+|+.+++.+-
T Consensus 134 ~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 134 DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 1 1223333332 235789999999996 78888888777654
No 188
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.41 E-value=1.7e-12 Score=104.02 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=77.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 85 (165)
...+.+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+...... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence 457899999999999888888888999999999998643112222333322222 23578999999998642211 11
Q ss_pred HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 86 EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 86 ~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+++..+.... +++++++||++|+|+++++++|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2233333332 56899999999999999999988754
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.40 E-value=2.6e-12 Score=103.54 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=74.6
Q ss_pred EEEEEEeCCCc--------hhhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQ--------ESFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~--------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
..+.+|||+|. +.+......+++.+|+++||+|+++..+.. ++..|+. . .++|+++|+||+|+.
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEEECccCC
Confidence 35899999996 344556677789999999999998754332 2333332 2 368999999999985
Q ss_pred CCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..... ... ...+++ +++++||.+|.|+.++++++...+.
T Consensus 121 ~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 121 KEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 43321 111 335566 6999999999999999999887663
No 190
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.40 E-value=4.1e-12 Score=98.75 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=91.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv 71 (165)
.++.+.+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....+..+..... .+.|++|+
T Consensus 155 ~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~ 234 (317)
T cd00066 155 KFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILF 234 (317)
T ss_pred EEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEE
Confidence 4555678899999999999999999999999999999999874 345555555555554433 57999999
Q ss_pred eeCCCCCCC---------------C-CCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHR---------------R-AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 72 ~nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
+||.|+..+ . .-+.+.+..+... ..+.++.++|.+..++..+|+.+.+.|+...
T Consensus 235 ~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 235 LNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 999996311 1 1223333333221 1344678899999999999999999998865
Q ss_pred h
Q 031132 126 Q 126 (165)
Q Consensus 126 ~ 126 (165)
.
T Consensus 315 l 315 (317)
T cd00066 315 L 315 (317)
T ss_pred h
Confidence 4
No 191
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.39 E-value=2.7e-12 Score=102.97 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=73.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 86 (165)
..+.||||||+++|......-...+|++++|+|++++.........+..+... .-.|+++++||+|+.+..... .+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 57899999999888665555566789999999999642111111222222221 224689999999986432211 12
Q ss_pred HHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 87 EGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 87 ~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+...++... +.+++++||++|+|++++++.|...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 233333322 46799999999999999999987765
No 192
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.38 E-value=1.1e-11 Score=98.60 Aligned_cols=113 Identities=16% Similarity=0.081 Sum_probs=80.4
Q ss_pred EEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDIT---RRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl 77 (165)
.+.|+||||..+- .......++.+|++++|+|++ +...++....|+..+..... .+.|+++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 5899999997531 111223578999999999988 44556667777777765432 36899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.....+ ......+....+ .+++.+||+++.|++++++.|.+.+.+
T Consensus 288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 543222 223333444444 368999999999999999999887754
No 193
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.37 E-value=6.9e-12 Score=87.32 Aligned_cols=110 Identities=18% Similarity=0.097 Sum_probs=72.7
Q ss_pred EEEEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 7 KPIKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
....+.+|||+|.... .......+..+|++++|+|+++..+.. ...+...+.. .+.|+++++||+|+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhcc
Confidence 3467889999997532 223455688999999999999862111 1122222222 358999999999985
Q ss_pred CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
............+.... ..+++++|++++.|++++++.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 32222222233333333 3579999999999999999998764
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.37 E-value=2.5e-12 Score=95.01 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=69.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh------HHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s------~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+......+.+|||+|+..+...+...+..+|++++|+|+++... .......+.... .. ...|+++++||+|
T Consensus 71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~D 148 (219)
T cd01883 71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMD 148 (219)
T ss_pred EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccc
Confidence 344556789999999998887766677888999999999988421 112222222222 21 2368999999999
Q ss_pred CCCCC--CCC----HHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 031132 77 LAHRR--AVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVE 111 (165)
Q Consensus 77 l~~~~--~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~ 111 (165)
+.... ... ..++..+....+ ++++++||++|+|++
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 86311 011 112222333433 569999999999987
No 195
>PRK10218 GTP-binding protein; Provisional
Probab=99.36 E-value=9e-12 Score=103.90 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=81.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+.+.+|||+|+.+|...+..+++.+|++++|+|+++.... ....++..+.. .++|.++++||+|+.....
T Consensus 62 ~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~ 137 (607)
T PRK10218 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARP 137 (607)
T ss_pred EEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCch
Confidence 4566778899999999999999999999999999999999875432 23333333332 4689999999999864321
Q ss_pred -CCHHHHHHHHH-------HcCCeEEEecCCCCC----------CHHHHHHHHHHHHH
Q 031132 83 -VSTEEGEQFAK-------EHGLIFMEASAKTAQ----------NVEEAFIKTAATIY 122 (165)
Q Consensus 83 -~~~~~~~~~~~-------~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~ 122 (165)
....+...+.. ...++++.+||.+|. |+..+++.|++.+-
T Consensus 138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 11223333321 235779999999998 46777776666553
No 196
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.36 E-value=2.2e-11 Score=85.53 Aligned_cols=106 Identities=24% Similarity=0.165 Sum_probs=70.3
Q ss_pred EEEEEeCCCchhh----------hh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 10 KLQIWDTAGQESF----------RS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~~----------~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.+|||+|.... .. .....+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccC
Confidence 4789999996432 11 112356799999999999987665433 22222222 368999999999986
Q ss_pred CCCCCCHHHHHH-HHHHc----CCeEEEecCCCCCCHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQ-FAKEH----GLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
............ +.... ..+++++||++++|+.++++++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 542122222222 22222 367999999999999999998875
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.36 E-value=3.6e-12 Score=102.76 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=71.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
++.+.+.+.||||||+++|.......+..+|++++|+|+++..++ .....++..+ ... ...|+++++||+|+.....
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~-~~~~iivviNK~Dl~~~~~ 156 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL-GINQLIVAINKMDAVNYDE 156 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc-CCCeEEEEEEccccccccH
Confidence 455667899999999988765444557899999999999873112 1122222222 222 2246899999999864211
Q ss_pred ----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132 83 ----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 83 ----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~ 115 (165)
...+++..++...+ ++++++||++|+|+.+.+.
T Consensus 157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11233444454454 4699999999999987543
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.35 E-value=9.3e-12 Score=91.26 Aligned_cols=105 Identities=21% Similarity=0.140 Sum_probs=68.1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-- 83 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-- 83 (165)
.....+.||||||+++|...+...++.+|++++|+|+++...-. ....+. +.... ...++++++||+|+......
T Consensus 74 ~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~-~~~~~-~~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 74 TPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSY-ILSLL-GIRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred cCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHH-HHHHc-CCCcEEEEEEchhcccCCHHHH
Confidence 34457889999999988766667789999999999998753211 112222 22221 12457779999998542211
Q ss_pred --CHHHHHHHHHHcCC---eEEEecCCCCCCHHHH
Q 031132 84 --STEEGEQFAKEHGL---IFMEASAKTAQNVEEA 113 (165)
Q Consensus 84 --~~~~~~~~~~~~~~---~~~~vSa~~~~~i~~l 113 (165)
...+...+...+++ +++++||++|.|+.+.
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 11233444455553 4899999999998753
No 199
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.35 E-value=1.5e-11 Score=96.47 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=90.2
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIG 72 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv~ 72 (165)
+....+.+.+||++|+..++..|.+++.+++++|||+|+++. ..+.+....+..+..... .+.|++|++
T Consensus 179 f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~ 258 (342)
T smart00275 179 FIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL 258 (342)
T ss_pred EEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 444556789999999999999999999999999999999973 345555556665554432 678999999
Q ss_pred eCCCCCCC---------------CCCCHHHHHHHHHH-----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 73 NKCDLAHR---------------RAVSTEEGEQFAKE-----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 73 nK~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
||.|+..+ ..-+...+..+... ..+.++.++|.+..++..+|+.+.+.|+.+..
T Consensus 259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 99997321 01122232222211 12446788999999999999999999988765
Q ss_pred c
Q 031132 127 D 127 (165)
Q Consensus 127 ~ 127 (165)
.
T Consensus 339 ~ 339 (342)
T smart00275 339 K 339 (342)
T ss_pred H
Confidence 4
No 200
>PRK00089 era GTPase Era; Reviewed
Probab=99.34 E-value=1.1e-11 Score=95.23 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=72.8
Q ss_pred EEEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...+.||||||.... .......+..+|++++|+|+++..+ ....++...... .+.|+++|+||+|+..
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVK 127 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCC
Confidence 367999999997442 2233446789999999999988321 111222222222 3689999999999853
Q ss_pred CCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...........+....+ .+++++||+++.|+++++++|.+.+
T Consensus 128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 22122223333333334 4699999999999999999988765
No 201
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.5e-11 Score=97.77 Aligned_cols=112 Identities=25% Similarity=0.268 Sum_probs=88.4
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+|+.+.++|.||||+-+|...-...+..+.+.++|+|+++.-.-..+.+.+..+.. +..++-|+||+||+...
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--- 144 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--- 144 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---
Confidence 67889999999999999888777788899999999999998666667666666653 46788899999997533
Q ss_pred HHHHH-HHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 85 TEEGE-QFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 85 ~~~~~-~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+... +...-.|+. .+.+||++|.||++++++|++.+-.
T Consensus 145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 33333 334445765 7899999999999999988876543
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.31 E-value=3e-11 Score=87.20 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=71.4
Q ss_pred EEEEEEeCCCc----------hhhhhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 9 IKLQIWDTAGQ----------ESFRSITRSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 9 ~~~~l~Dt~G~----------~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
..+.+|||+|. +.+..+...+++.+ +++++|+|.+++.+.... .+...+ .. .+.|+++++||+
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~ 145 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKA 145 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECc
Confidence 46889999994 44555666666654 678899998875433221 111222 22 368999999999
Q ss_pred CCCCCCCCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 76 DLAHRRAVS--TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 76 Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
|+....... ...+.........+++++||+++.|++++++.|.+.+
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 985432211 1123233333357899999999999999999887654
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=1.9e-11 Score=104.17 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=72.5
Q ss_pred EEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||+|.+. +......+++.+|++|||+|+++.....+ ..|...+.. .+.|+++|+||+|+...
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence 4688999999763 34455667899999999999987422111 123333332 47899999999998532
Q ss_pred CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
. .....+ ...++ ..+++||++|.|+.+++++|++.+..
T Consensus 399 ~----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 399 E----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred h----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1 111111 12343 36799999999999999999987744
No 204
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.31 E-value=1.7e-11 Score=85.68 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=67.0
Q ss_pred EEEEEEeCCCch------hhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQE------SFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~------~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.|+|+||.- .....+..++ ...|++++|+|+++.. .-......+.. .++|+++++||+|....
T Consensus 47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAER 120 (156)
T ss_dssp EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHH
T ss_pred ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHH
Confidence 468999999942 1234445554 5899999999998743 22222222222 47999999999997543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l 117 (165)
..+.. ....+.+.+++|++.+||.+++|+++++++|
T Consensus 121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 33322 3455666789999999999999999999875
No 205
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.3e-11 Score=97.22 Aligned_cols=113 Identities=26% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+|+.+.++++||||+-+|+..-...+..+|++|+|+|+++...-....+++..+. .+.-+|.|+||+|++..+
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad--- 193 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD--- 193 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---
Confidence 4667999999999999999988888999999999999998765555555554444 457888999999997543
Q ss_pred HHHHHHHH-HHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 85 TEEGEQFA-KEH---GLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 85 ~~~~~~~~-~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+.+.... .-+ .-+++.+||++|.|+.++++++++.+-..
T Consensus 194 pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 194 PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 33332222 222 34599999999999999988888776443
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.30 E-value=6.8e-11 Score=98.56 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=72.9
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--C-
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S- 84 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~- 84 (165)
+.||||||++.|..++...+..+|++++|+|+++ +.+++.+. .+. . .++|+++++||+|+...... .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-~--~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-R--RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-H--cCCCEEEEEECcCCchhhhhhcCc
Confidence 6899999999999999988999999999999997 44444332 221 1 46899999999998421110 0
Q ss_pred ---------HHH-----------HHHHHHHc---------------CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 85 ---------TEE-----------GEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 85 ---------~~~-----------~~~~~~~~---------------~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
... ........ .++++++||++|+|+.+++..+...+
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000 00111111 25689999999999999998876543
No 207
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.29 E-value=3.2e-11 Score=88.16 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=60.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVYDITRR-ETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAH 79 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a-d~vi~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~ 79 (165)
....+.+||+||+.+++..+..+++.+ +++|||+|+++. .++.++..++..+.... ..++|+++++||+|+..
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 356789999999999999999999999 999999999997 67777777766554322 14799999999999854
No 208
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.28 E-value=3e-11 Score=88.84 Aligned_cols=70 Identities=27% Similarity=0.313 Sum_probs=55.1
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+++.+.+.+|||+|+.++...+..++..+|++++|+|+++..+.. ...++..+.. .+.|+++++||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence 456789999999999999888888999999999999998765543 2333333322 358999999999974
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.28 E-value=1.1e-10 Score=87.28 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=56.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.++.+...+.+|||||+.+|...+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+.
T Consensus 58 ~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 58 SFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred EEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 3455667899999999999988889999999999999999986433 33444444433 368999999999985
No 210
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=4.5e-11 Score=96.60 Aligned_cols=109 Identities=25% Similarity=0.207 Sum_probs=71.8
Q ss_pred EEEEEEeCCCchh----------hhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQES----------FRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~----------~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
..+.+|||+|..+ |... ...+++.+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl 296 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDL 296 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccC
Confidence 4578999999643 2211 224678999999999999876554432 2222222 36899999999998
Q ss_pred CCCCCCCHHHHHHHHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKE----HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
...... .+....+... ...+++++||++|.|+.++++.+.+...
T Consensus 297 ~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 297 VDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 632111 1111111111 2468999999999999999999877543
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.27 E-value=6.4e-11 Score=99.18 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=73.8
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCCCC--HH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS--TE 86 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~ 86 (165)
.+.||||||+++|.......+.++|++++|+|+++... ......+..+ .. .++| ++||+||+|+.++.... .+
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-~qT~ehl~il-~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ 127 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-AQTREHLAIL-QL--TGNPMLTVALTKADRVDEARIAEVRR 127 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCccCCHHHHHHHHH
Confidence 47899999999997766667899999999999987321 1122222222 22 2455 57999999985432111 22
Q ss_pred HHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 87 EGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 87 ~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+...+....+ .+++++||++|+|++++++.|....
T Consensus 128 ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 128 QVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 3334444444 5799999999999999999987654
No 212
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.4e-10 Score=93.53 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=80.7
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 89 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 89 (165)
.+.|.||||++.|..|+..=.+-+|++|+|+|+++.- ..+.+..+......+.|++|++||+|.++ .++....
T Consensus 56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~ 128 (509)
T COG0532 56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVK 128 (509)
T ss_pred eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHH
Confidence 5889999999999999988888999999999999842 11122223222235899999999999873 3344444
Q ss_pred HHHHHcC---------CeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 90 QFAKEHG---------LIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 90 ~~~~~~~---------~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
....++| ..++++||++|+|+.+++..++-+....
T Consensus 129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 4344433 3589999999999999999888766655
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=1.3e-10 Score=99.16 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=75.4
Q ss_pred eeCCEEEEEEEEeCCCch----------hhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQE----------SFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~----------~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.+++.. +.+|||+|.. .|..+. ...++.+|++++|+|+++..+...... +..+.. .++|+++|
T Consensus 494 ~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV 567 (712)
T PRK09518 494 EIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLV 567 (712)
T ss_pred EECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEE
Confidence 345544 6699999963 222222 344789999999999998877665542 333322 46899999
Q ss_pred eeCCCCCCCCCCCHHHHHH-HHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRRAVSTEEGEQ-FAKEH----GLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 72 ~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+||+|+.+... ...... +.... ..+++++||++|.|++++|+.+.+....
T Consensus 568 ~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 568 FNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999954221 111111 11111 2457999999999999999998886654
No 214
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.24 E-value=4.3e-11 Score=85.55 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=63.4
Q ss_pred EEEEEeCCCc----------hhhhhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 10 KLQIWDTAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G~----------~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+|||+|. ..+..+...+++. ++++++|+|++++.+.... .++..+. . .++|+++++||+|
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~--~~~pviiv~nK~D 140 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E--RGIPVLIVLTKAD 140 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H--cCCCEEEEEECcc
Confidence 4789999995 3344455556654 5899999999876444433 2223222 2 3689999999999
Q ss_pred CCCCCCC--CHHHHHHHHHHcC--CeEEEecCCCCCCHH
Q 031132 77 LAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVE 111 (165)
Q Consensus 77 l~~~~~~--~~~~~~~~~~~~~--~~~~~vSa~~~~~i~ 111 (165)
+...... ...+++......+ .+++++||++|+|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 8543211 2233333444433 479999999999973
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.23 E-value=1.5e-10 Score=99.04 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=80.5
Q ss_pred eCCEEEEEEEEeCCCchhhhh----------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 4 IDNKPIKLQIWDTAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
+++....+++|||||..++.. ....++ ..+|++++|+|+++.+. ...+...+.+ .+.|++++
T Consensus 45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvV 118 (772)
T PRK09554 45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVA 118 (772)
T ss_pred EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEE
Confidence 445566789999999866532 233343 48999999999988533 2223333332 46899999
Q ss_pred eeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 72 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+||+|+.+...+ ......+.+.++++++++||.+++|++++++.+.+..
T Consensus 119 lNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 119 LNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 999998644433 3455667778899999999999999999999887654
No 216
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.23 E-value=3.7e-10 Score=98.68 Aligned_cols=105 Identities=26% Similarity=0.284 Sum_probs=72.6
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-- 85 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 85 (165)
+.||||||++.|..+....+..+|++++|+|+++. .+++.+ ..+. . .++|+++++||+|+........
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk-~--~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILR-Q--YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHH-H--cCCCEEEEEECCCCccccccccch
Confidence 79999999999988888888899999999999873 333332 2222 2 3689999999999853221100
Q ss_pred ----------HH-HHHH----------HHHc---------------CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 86 ----------EE-GEQF----------AKEH---------------GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 86 ----------~~-~~~~----------~~~~---------------~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.. ...+ .... .++++++||++|+|+++++..|.....
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 00 0000 0111 356899999999999999987765433
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.21 E-value=3.4e-10 Score=82.27 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=69.2
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.+...+.|.||||..+|.......+..+|++++|+|++....- .....+..+.. .++| +++++||+|+.....
T Consensus 60 ~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~ 135 (195)
T cd01884 60 YETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEE 135 (195)
T ss_pred ecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHH
Confidence 444556789999999998877666678899999999999875322 22233333332 3566 778999999853221
Q ss_pred C---CHHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 031132 83 V---STEEGEQFAKEHG-----LIFMEASAKTAQNVE 111 (165)
Q Consensus 83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~ 111 (165)
. ...++..+....+ ++++++||++|.|+.
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 1 1123444444443 579999999999863
No 218
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.19 E-value=5.1e-10 Score=83.48 Aligned_cols=107 Identities=24% Similarity=0.168 Sum_probs=71.1
Q ss_pred EEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHH----------------------
Q 031132 8 PIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRE-TFNHLASWLED---------------------- 57 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~---------------------- 57 (165)
...+++|||||..+.. ......++++|++++|+|+++.. ..+.+...+..
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi 125 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI 125 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence 4568999999975322 23345789999999999998754 33323222210
Q ss_pred ------------------HHHhc----------------------C---CCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 031132 58 ------------------ARQHA----------------------N---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 94 (165)
Q Consensus 58 ------------------i~~~~----------------------~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 94 (165)
+++.. . ..+|+++|+||+|+. ..++...++.
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~- 199 (233)
T cd01896 126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLAR- 199 (233)
T ss_pred EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhc-
Confidence 00000 0 236999999999984 2344444433
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 95 HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 95 ~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...++++||.++.|++++|+.+.+.+
T Consensus 200 -~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 200 -QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred -CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999887754
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.17 E-value=6.8e-10 Score=82.34 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=68.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-
Q 031132 8 PIKLQIWDTAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS- 84 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~- 84 (165)
...+.|.||||.++|.......+ ..+|++++|+|++.... .....++..+.. .++|+++++||+|+.+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHHHH
Confidence 34689999999998865433334 36899999999887532 222223333322 368999999999985432111
Q ss_pred -HHHHHHHHHH--------------------------cCCeEEEecCCCCCCHHHHHHHHH
Q 031132 85 -TEEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 85 -~~~~~~~~~~--------------------------~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
..+...+... ...+++.+||.+|+|++++...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1112222210 123789999999999999887664
No 220
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.17 E-value=4.9e-10 Score=89.09 Aligned_cols=103 Identities=19% Similarity=0.111 Sum_probs=72.0
Q ss_pred EEEEEEeCCCchhh---------hhhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQESF---------RSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~---------~~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
..|.+.||+|.+.. .......+..||++|||+|.....+ -+.+..++. . .++|+++|+||+|-
T Consensus 51 ~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~ 124 (444)
T COG1160 51 REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDN 124 (444)
T ss_pred ceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccC
Confidence 34899999998632 2223445778999999999987432 233333333 2 56999999999996
Q ss_pred CCCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.. .+........+|+. ++.+||.+|.|+.+++++++..+-
T Consensus 125 ~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 125 LK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 41 22222223345655 999999999999999999888764
No 221
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.15 E-value=1.6e-10 Score=80.85 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=65.0
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 22 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 22 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
|+.++++.++++|++|+|+|++++..... ..+...+ .. .+.|+++++||+|+..... ......+....+.++++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~--~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE--LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh--CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 56788899999999999999987543221 1111212 11 3689999999999843211 11111233345678999
Q ss_pred ecCCCCCCHHHHHHHHHHHHH
Q 031132 102 ASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 102 vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999998877654
No 222
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.14 E-value=5.4e-10 Score=80.70 Aligned_cols=93 Identities=23% Similarity=0.165 Sum_probs=64.9
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHH-----HHcC
Q 031132 22 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHG 96 (165)
Q Consensus 22 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 96 (165)
+..++..+++++|++++|+|+++.... |...+.... .+.|+++|+||+|+.... ........+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 477889999999999999999875421 111222121 468999999999986432 2233333332 2233
Q ss_pred C---eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 97 L---IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 97 ~---~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+ +++++||+++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998775
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.12 E-value=5.2e-10 Score=82.78 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=54.4
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
++.+.+.+|||||+.+|.......++.+|++++|+|++....... ...+..... .++|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 558899999999999999999999999999999999998654443 222222221 367999999999974
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.12 E-value=8.5e-10 Score=88.23 Aligned_cols=102 Identities=19% Similarity=0.173 Sum_probs=66.1
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRR 81 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~ 81 (165)
.++.....+.||||||+++|......-+..+|++++|+|++...... ....+..+.. .++|.+ +++||+|+.+..
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHH
Confidence 34455667899999999988665555567889999999998742221 2222333322 356755 689999986422
Q ss_pred CCC---HHHHHHHHHHcC-----CeEEEecCCCCC
Q 031132 82 AVS---TEEGEQFAKEHG-----LIFMEASAKTAQ 108 (165)
Q Consensus 82 ~~~---~~~~~~~~~~~~-----~~~~~vSa~~~~ 108 (165)
... ..+...++..++ ++++++||.++.
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 111 123445555554 679999999875
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.12 E-value=1e-09 Score=87.81 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=64.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.....+.||||||+++|......-+..+|++++|+|++.... .....++..+.. .++| +++++||+|+.+...
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~ 145 (394)
T PRK12736 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYLVVFLNKVDLVDDEE 145 (394)
T ss_pred ecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCEEEEEEEecCCcchHH
Confidence 33445568899999998886655555678999999999987422 122223333322 3677 678899999853222
Q ss_pred CC---HHHHHHHHHHcC-----CeEEEecCCCCC
Q 031132 83 VS---TEEGEQFAKEHG-----LIFMEASAKTAQ 108 (165)
Q Consensus 83 ~~---~~~~~~~~~~~~-----~~~~~vSa~~~~ 108 (165)
.. ..+...+....+ ++++++||++|.
T Consensus 146 ~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 146 LLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 11 123444444444 479999999983
No 226
>COG1159 Era GTPase [General function prediction only]
Probab=99.12 E-value=7.9e-10 Score=83.68 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=71.6
Q ss_pred EEEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
..++.|.||||..+ .......-++.+|+++||+|+++...- ...++-...+. .+.|+++++||.|...
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~ 128 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVK 128 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCC
Confidence 66899999999754 222334457899999999999884322 22222222222 3579999999999865
Q ss_pred CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
....-......+.....+ .++++||++|.|++.+.+.+...+
T Consensus 129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhC
Confidence 433112222222223333 599999999999999988776654
No 227
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-09 Score=88.61 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=79.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
-.+.|.||||+.-|.+|+..=..-+|++++|+.++|.- +.+.+..+......++|++|++||+|.++. +++.+
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv 273 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKV 273 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHH
Confidence 35899999999999999998888999999999998852 112222233333358999999999997643 34444
Q ss_pred HHHHHH-------cC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 89 EQFAKE-------HG--LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 89 ~~~~~~-------~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
...... +| .+++++||++|+|++.+-++++-+.--
T Consensus 274 ~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 274 KRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV 317 (683)
T ss_pred HHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence 333333 32 569999999999999988887765433
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.10 E-value=1.7e-09 Score=89.18 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=54.7
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.++++.+.+.+|||||+.+|.......+..+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 73 ~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred EEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 4566678899999999999988777788999999999999875322 22333332222 478999999999974
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.10 E-value=1.2e-09 Score=76.11 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=68.0
Q ss_pred EEEEEeCCCc----------hhhhhhhHhhhc---CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 10 KLQIWDTAGQ----------ESFRSITRSYYR---GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 10 ~~~l~Dt~G~----------~~~~~~~~~~~~---~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+.+|||+|. +.+...+..++. +.+++++++|.+...+ ...+..|+.. .+.|+++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEc
Confidence 6789999994 234555566655 4578999999886532 2223333332 25799999999
Q ss_pred CCCCCCCCCCH--HHHHHHHH--HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 75 CDLAHRRAVST--EEGEQFAK--EHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 75 ~Dl~~~~~~~~--~~~~~~~~--~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+|+........ ........ ....+++++||+++.|+.+++++|.+.
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 99853321111 11222222 234568999999999999999998765
No 230
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.09 E-value=6.3e-10 Score=90.18 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=73.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHHHHHHHHHHhcCCCC-eEEEEeeCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLASWLEDARQHANANM-TIMLIGNKC 75 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~-------~~~~~~~~~i~~~~~~~~-p~ivv~nK~ 75 (165)
+..+...+.+.|+||+++|.......+..+|++|+|+|+++. .+ ......+..+.. .++ ++++++||+
T Consensus 80 ~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKm 155 (447)
T PLN00043 80 FETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKM 155 (447)
T ss_pred ecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcc
Confidence 455567899999999999988888889999999999999873 22 233333332222 356 468889999
Q ss_pred CCCCCC--C----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132 76 DLAHRR--A----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE 112 (165)
Q Consensus 76 Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~ 112 (165)
|+.... . ...+++..++...+ ++++++||++|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 975211 0 11334555666665 5699999999999854
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.08 E-value=2.2e-09 Score=81.63 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=55.5
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.++++.+.+.+|||+|+.+|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 5667788999999999999888777788999999999999875322 22233333222 4689999999999854
No 232
>PRK09866 hypothetical protein; Provisional
Probab=99.07 E-value=3.4e-09 Score=87.97 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=71.9
Q ss_pred EEEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 9 IKLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
.++.|.||||... ........+..+|+|+||+|++...+..+. ..+..+... +...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 3678999999854 233344568999999999999875333321 222333322 123599999999998543322
Q ss_pred CHHHHHHHHH----HcCC---eEEEecCCCCCCHHHHHHHHHH
Q 031132 84 STEEGEQFAK----EHGL---IFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 84 ~~~~~~~~~~----~~~~---~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
..+....+.. ..++ .++++||+.|.|++.+++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444444432 2222 4999999999999999998876
No 233
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=6.8e-10 Score=87.29 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=67.1
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 23 RSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 23 ~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
..+.+..+.++|.+++|+|+.++. +...+..|+..+.. .++|++||+||+||..... ..........+++++++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 445556689999999999998764 44566677765532 4789999999999953211 12222334467889999
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 031132 102 ASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 102 vSa~~~~~i~~l~~~l~~ 119 (165)
+||.++.|++++++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999988754
No 234
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.06 E-value=1.6e-09 Score=87.86 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=72.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 86 (165)
..+.|.|+||+++|-.....-+..+|++++|+|++...........+..+. .. .-.++++++||+|+...... ..+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHHHHHHHH
Confidence 368999999999986655556779999999999987421122223333222 21 22468899999998532211 011
Q ss_pred HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 87 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 87 ~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
++..+... ...+++++||.+|+|++.+++.|...+
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 22222222 256899999999999999998887644
No 235
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=1.9e-09 Score=81.30 Aligned_cols=111 Identities=20% Similarity=0.197 Sum_probs=70.1
Q ss_pred EEEEEeCCCchhh---hhhhHhhhcC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 10 KLQIWDTAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 10 ~~~l~Dt~G~~~~---~~~~~~~~~~-----ad~vi~v~D~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.+.+||++|+.+. +..++.+++. ++++++|+|++........ ..|+....... .+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 5789999998663 4444444333 8999999999764332222 22222222111 4789999999999864
Q ss_pred CCCCCHH--HHH------------------------HHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTE--EGE------------------------QFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~--~~~------------------------~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
....... ... ......+ .+++++|+.+++|+++++++|.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3321100 000 0122233 5789999999999999999987765
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.04 E-value=2.8e-09 Score=73.22 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=72.8
Q ss_pred EEEeCCCc----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 12 QIWDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 12 ~l~Dt~G~----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
.+.||||. ..+....-....+||.|++|.|++++.+... ..+... -+.|+|=|+||+|+.. .....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHH
Confidence 46899995 4455555556679999999999998643211 112222 3589999999999963 2345566
Q ss_pred HHHHHHHcCCe-EEEecCCCCCCHHHHHHHHH
Q 031132 88 GEQFAKEHGLI-FMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 88 ~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~ 118 (165)
...+....|+. +|++|+.+|+|++++.+.|.
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 67777777876 89999999999999998874
No 237
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.03 E-value=1.3e-09 Score=83.60 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=66.1
Q ss_pred hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCC
Q 031132 28 SYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT 106 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 106 (165)
..+.++|.+++|+|++++. ++..+..|+..+... ++|+++|+||+||.... ............+++++++||++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCC
Confidence 3488999999999999887 778888888766543 68999999999995431 11122333445788999999999
Q ss_pred CCCHHHHHHHHH
Q 031132 107 AQNVEEAFIKTA 118 (165)
Q Consensus 107 ~~~i~~l~~~l~ 118 (165)
+.|+++++..|.
T Consensus 149 g~gi~~L~~~L~ 160 (287)
T cd01854 149 GEGLDELREYLK 160 (287)
T ss_pred CccHHHHHhhhc
Confidence 999999988765
No 238
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=85.13 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=77.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.++-.++.+.+.||+|.++.... ....++.||.+++|+|.+.+.+-.+... +. ....+.|+++|.||
T Consensus 259 ~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~----~~-~~~~~~~~i~v~NK 333 (454)
T COG0486 259 DINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL----IE-LLPKKKPIIVVLNK 333 (454)
T ss_pred EEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH----HH-hcccCCCEEEEEec
Confidence 35556677999999998653322 2345789999999999998522211111 11 12257899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.||......... ....+.+++.+|+++|+|++.+.+.|...+...
T Consensus 334 ~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 334 ADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 999654332111 112355799999999999999999988877766
No 239
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.02 E-value=3.5e-09 Score=82.50 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=92.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHHHhcC----CCCeEEE
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLASWLEDARQHAN----ANMTIML 70 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s-------~~~~~~~~~~i~~~~~----~~~p~iv 70 (165)
+.+..+...+.++|++||...+..|-+++.+++++|||++++..+. .+.+..-+..+...++ .+.++++
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 4456666889999999999999999999999999999999986432 3344455555555554 5789999
Q ss_pred EeeCCCCCCC---------------CCCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 71 IGNKCDLAHR---------------RAVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 71 v~nK~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
++||.||-.+ +.-..+++..+... ..+.++.+.|.+..+|+.+|.++.+.|+...
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999998422 11122232222211 1344778899999999999999999999876
Q ss_pred hcC
Q 031132 126 QDG 128 (165)
Q Consensus 126 ~~~ 128 (165)
...
T Consensus 348 lk~ 350 (354)
T KOG0082|consen 348 LKD 350 (354)
T ss_pred HHH
Confidence 653
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=99.02 E-value=3.9e-09 Score=84.50 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~ 82 (165)
++.+...+.|+||||+++|......-+..+|++++|+|+++... .....++..+.. .++|.+ +++||+|+.....
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHH
Confidence 33445578999999998886655566778999999999987432 222233333322 357865 5799999853221
Q ss_pred C---CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132 83 V---STEEGEQFAKEHG-----LIFMEASAKTAQN 109 (165)
Q Consensus 83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~ 109 (165)
. ...++..+...++ ++++++||.+|.|
T Consensus 146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 1 1123444454443 5789999999854
No 241
>PRK13351 elongation factor G; Reviewed
Probab=99.02 E-value=3e-09 Score=90.64 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=56.5
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+++....+.+|||||+.++...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 68 ~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 68 CDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 445567899999999999999999999999999999999987655543333 33322 368999999999985
No 242
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.01 E-value=5.3e-09 Score=83.27 Aligned_cols=110 Identities=24% Similarity=0.139 Sum_probs=73.9
Q ss_pred EEEEEEEeCCCchh----------hhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQES----------FRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----------~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.-.+.|.||+|..+ |.- -....+..+|++++|+|++.+.+-.+.. ....+.. .+.+++++.||+|
T Consensus 225 ~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWD 300 (444)
T COG1160 225 GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWD 300 (444)
T ss_pred CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccc
Confidence 34478999999753 222 1234577899999999999875444331 2222222 4789999999999
Q ss_pred CCCCCCCCHHHHHHHHH----Hc-CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAK----EH-GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~----~~-~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+.+......++...... .. ..+.+++||.++.++..+|+++....
T Consensus 301 l~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 301 LVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred cCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 86654344444332222 22 35699999999999999999887643
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.00 E-value=3.5e-09 Score=84.99 Aligned_cols=105 Identities=22% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
..+...+.||||||+++|......-+..+|++++|+|++....-. ....+..+... ...++++++||+|+.......
T Consensus 76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc--CCCcEEEEEEecccccchHHH
Confidence 344557899999999998665556688999999999998653211 11122222222 224688899999985422111
Q ss_pred ----HHHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 031132 85 ----TEEGEQFAKEHG---LIFMEASAKTAQNVEE 112 (165)
Q Consensus 85 ----~~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 112 (165)
.++...+....+ ++++++||++|+|+.+
T Consensus 153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 112222333344 4699999999999886
No 244
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.98 E-value=1.1e-09 Score=89.10 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=91.5
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcC--CCCeEEEEeeCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHAN--ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~ 82 (165)
-..+...+.||+..+.-+......++.||++.+||+++++.+++.+.. |+..+++... .+.|+|+|+||+|+.....
T Consensus 53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 345668899998777666777888999999999999999999998877 7777777664 5799999999999865444
Q ss_pred CCHHH-HHHHHHHc-CCe-EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 83 VSTEE-GEQFAKEH-GLI-FMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~~~-~~~~~~~~-~~~-~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+.+. ...+..++ .+. +++|||++..++.++|+...+.++.
T Consensus 133 ~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 133 NSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred cchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 43333 22223333 344 8999999999999999998887765
No 245
>PRK12288 GTPase RsgA; Reviewed
Probab=98.98 E-value=3e-09 Score=83.57 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=66.4
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEecCCCCC
Q 031132 30 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLIFMEASAKTAQ 108 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~~~ 108 (165)
..|+|.+++|++.+...++..+..|+..+.. .++|++||+||+||...... ............+++++++||.+++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999875542 46899999999999542211 1122223344678899999999999
Q ss_pred CHHHHHHHHHH
Q 031132 109 NVEEAFIKTAA 119 (165)
Q Consensus 109 ~i~~l~~~l~~ 119 (165)
|++++++.|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988754
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.97 E-value=2.7e-09 Score=87.17 Aligned_cols=107 Identities=21% Similarity=0.122 Sum_probs=66.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
+..+..++.||||||+++|......-+..+|++++|+|++....-. ....+..+... .-.|+++++||+|+......
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence 3344567899999999888654444579999999999998653211 11111112212 12478899999998632211
Q ss_pred CHHH----HHHHHHHc----CCeEEEecCCCCCCHHHH
Q 031132 84 STEE----GEQFAKEH----GLIFMEASAKTAQNVEEA 113 (165)
Q Consensus 84 ~~~~----~~~~~~~~----~~~~~~vSa~~~~~i~~l 113 (165)
.... ...+.... ..+++++||++|+|+.++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1111 22223333 366999999999999865
No 247
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.96 E-value=9.4e-09 Score=78.47 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=79.8
Q ss_pred EEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031132 11 LQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 78 (165)
Q Consensus 11 ~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~ 78 (165)
+.+=|.||.-+- .......++.++.++||+|++.. +-++.+..++.++..+.. ...|.++|+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 888999997542 22233447789999999999988 778888887777776654 578999999999985
Q ss_pred CCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+. ......+++....-+ ++++||++++|+.++++.|.+.
T Consensus 326 ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 326 EA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred hH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 21 122235556555544 9999999999999999887653
No 248
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.96 E-value=3.5e-09 Score=80.65 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=54.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+..+...+.||||||..++...+...++.+|++++|+|+++...-. ...++..+.. .++|+++++||+|+.+
T Consensus 59 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 59 CFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 3445677899999999999888899999999999999998753222 2223333322 4689999999999854
No 249
>PRK12740 elongation factor G; Reviewed
Probab=98.95 E-value=1.2e-08 Score=86.79 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=54.5
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+..+.+.+.+|||||+.++...+...+..+|++++|+|++........ ..+..+.. .++|+++++||+|+.
T Consensus 55 ~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 55 CEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 444567899999999999888888889999999999999886554433 22222222 468999999999985
No 250
>PRK00098 GTPase RsgA; Reviewed
Probab=98.94 E-value=2.7e-09 Score=82.39 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=61.5
Q ss_pred hcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCC
Q 031132 30 YRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 108 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 108 (165)
+.++|++++|+|++++... ..+..|+..+.. .++|+++|+||+||..... ............+++++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 4899999999999876543 345666665543 4689999999999953211 1122334455678899999999999
Q ss_pred CHHHHHHHH
Q 031132 109 NVEEAFIKT 117 (165)
Q Consensus 109 ~i~~l~~~l 117 (165)
|++++++.+
T Consensus 154 gi~~L~~~l 162 (298)
T PRK00098 154 GLDELKPLL 162 (298)
T ss_pred cHHHHHhhc
Confidence 999998876
No 251
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.93 E-value=3.3e-09 Score=78.84 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred EEEEEEeCCCchhhh-----hhhHhhhcCCcEEEEEEeCCChhhH---HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~-----~~~~~~~~~ad~vi~v~D~~~~~s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++||.||+..+- ......++++.++|||+|+.+.+-. ..+...+..+.+.. ++..+.+++.|+|+..+
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-H
T ss_pred cEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCH
Confidence 478999999997542 3467889999999999999854333 33333444444443 78899999999998532
Q ss_pred CC--CC----HHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RA--VS----TEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~--~~----~~~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.. .. ...+...+...+ +.++.+|..+ +.+.++|..+++.++....
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred HHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 11 11 112222334445 6688888887 6999999999988876443
No 252
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.93 E-value=8.4e-09 Score=81.61 Aligned_cols=95 Identities=26% Similarity=0.334 Sum_probs=69.0
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HHHH
Q 031132 19 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAKE 94 (165)
Q Consensus 19 ~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 94 (165)
.++|..+...+++.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+.... ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4578888999999999999999997643 22334444333 36799999999998543 233333333 3555
Q ss_pred cCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132 95 HGL---IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 95 ~~~---~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.++ .++++||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999988654
No 253
>CHL00071 tufA elongation factor Tu
Probab=98.91 E-value=1.6e-08 Score=81.34 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=67.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.+..++.|.||||+.+|......-+..+|++++|+|++.... ......+..+.. .++| +++++||+|+.....
T Consensus 70 ~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred EccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHH
Confidence 33445568899999998876655566789999999999986432 222233333222 3578 778999999864222
Q ss_pred C---CHHHHHHHHHHcC-----CeEEEecCCCCCCH
Q 031132 83 V---STEEGEQFAKEHG-----LIFMEASAKTAQNV 110 (165)
Q Consensus 83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~i 110 (165)
. ...++..+....+ ++++++||.+|.|+
T Consensus 146 ~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 146 LLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 1 1123444444443 57999999998754
No 254
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.4e-09 Score=72.34 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=84.1
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
.+++++.+|.+|+..-+..|..|+..+|+++|++|+.|.+.+.+.+..+..+..... ..+|+++.+||+|.+.. .+.
T Consensus 62 g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se 139 (193)
T KOG0077|consen 62 GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASE 139 (193)
T ss_pred cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccH
Confidence 456789999999999999999999999999999999999999999888877765543 68999999999998643 344
Q ss_pred HHHHHHHH---Hc-----------C---CeEEEecCCCCCCHHHHHHHHHH
Q 031132 86 EEGEQFAK---EH-----------G---LIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 86 ~~~~~~~~---~~-----------~---~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
++.+.... .. + +..+.||...+.+.-+.|.|+-.
T Consensus 140 ~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 140 DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 44332211 11 1 23566787777777777776654
No 255
>COG2262 HflX GTPases [General function prediction only]
Probab=98.90 E-value=5.3e-08 Score=76.69 Aligned_cols=121 Identities=18% Similarity=0.110 Sum_probs=83.3
Q ss_pred EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.+.+.||-|.-+ |++..+ ....||.++.|+|++++.....+......+....-..+|+++|.||+|+...
T Consensus 241 ~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 241 KVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred eEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 477889998743 333333 3568999999999999976666666555555543356899999999997543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 136 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~ 136 (165)
.. ....+....-..+.+||++|+|++.+...|...+........+..+...
T Consensus 320 ~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~ 370 (411)
T COG2262 320 EE-----ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTD 370 (411)
T ss_pred hh-----hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccc
Confidence 22 1111111111489999999999999999999988876665555554433
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.87 E-value=1.9e-08 Score=85.00 Aligned_cols=104 Identities=22% Similarity=0.157 Sum_probs=66.1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
.....+.|+||||+++|......-+..+|++++|+|++....- .....+..+... ...+++|++||+|+.+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 3444678999999998866555567899999999999764321 111222222222 2357889999999853211111
Q ss_pred ----HHHHHHHHHcCC---eEEEecCCCCCCHHH
Q 031132 86 ----EEGEQFAKEHGL---IFMEASAKTAQNVEE 112 (165)
Q Consensus 86 ----~~~~~~~~~~~~---~~~~vSa~~~~~i~~ 112 (165)
.+...+....++ +++++||++|+|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 122233344453 589999999999874
No 257
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.87 E-value=2.9e-08 Score=80.61 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=69.9
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCe-EEEEeeCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCD 76 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D 76 (165)
++.....+.|.||||+.+|......-+..+|++++|+|++...- + ......+..+.. .++| +++++||+|
T Consensus 80 ~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD 156 (446)
T PTZ00141 80 FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMD 156 (446)
T ss_pred EccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccc
Confidence 45566789999999999997777777889999999999986421 1 123333333222 3566 678999999
Q ss_pred CCCC--CC----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132 77 LAHR--RA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE 112 (165)
Q Consensus 77 l~~~--~~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~ 112 (165)
+... .. ....++..+....+ ++++++||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 5321 10 11223333333333 5699999999999864
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=4.4e-08 Score=78.46 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=64.3
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCCC-
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV- 83 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~- 83 (165)
.+...+.|.||||+.+|......-+..+|++++|+|++.... .....++..+.. .++|.+ +++||+|+.+....
T Consensus 72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~ 147 (396)
T PRK00049 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELL 147 (396)
T ss_pred CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHH
Confidence 344568899999998886655566789999999999987432 222233333322 357876 58999998532211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132 84 --STEEGEQFAKEHG-----LIFMEASAKTAQN 109 (165)
Q Consensus 84 --~~~~~~~~~~~~~-----~~~~~vSa~~~~~ 109 (165)
...++..+....+ ++++++||.++.+
T Consensus 148 ~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 1122333343333 5789999998764
No 259
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.86 E-value=6.6e-09 Score=78.98 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=67.9
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
++.+.+.+.+|||+|..++...+...+..+|++++|+|+++....... ..+..+.. .++|.++++||+|+....
T Consensus 59 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~-- 132 (268)
T cd04170 59 LEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD-- 132 (268)
T ss_pred EEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--
Confidence 334456789999999998888888899999999999999886544322 22222222 468999999999986431
Q ss_pred CHHHHHHHHHHcCCeEEE--ecCCCCCCHHHHHH
Q 031132 84 STEEGEQFAKEHGLIFME--ASAKTAQNVEEAFI 115 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~--vSa~~~~~i~~l~~ 115 (165)
.......+...++.+++. +...++.++..+.+
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd 166 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVD 166 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccCCCceeEEEE
Confidence 122233333444554333 33455555444433
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=98.82 E-value=5.6e-08 Score=78.92 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=66.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.+..++.|.||||+.+|-.....-+..+|++++|+|++.... ......+..+.. .++| +++++||+|+.+...
T Consensus 119 ~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 119 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred EcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHH
Confidence 44445678999999998875544445567999999999986532 222222332222 3678 578899999864221
Q ss_pred CCH---HHHHHHHHHc-----CCeEEEecCC---CCCC-------HHHHHHHHHHH
Q 031132 83 VST---EEGEQFAKEH-----GLIFMEASAK---TAQN-------VEEAFIKTAAT 120 (165)
Q Consensus 83 ~~~---~~~~~~~~~~-----~~~~~~vSa~---~~~~-------i~~l~~~l~~~ 120 (165)
... .+...+.... .++++++||. ++.| +..+++.+...
T Consensus 195 ~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 195 LLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 111 1222333322 2568888875 5555 45555555443
No 261
>PLN03126 Elongation factor Tu; Provisional
Probab=98.79 E-value=3.7e-08 Score=80.52 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=67.3
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.+...+.|+|+||+++|-.....-+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.....
T Consensus 139 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~ 214 (478)
T PLN03126 139 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEE 214 (478)
T ss_pred EecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEecccccCHHH
Confidence 33445578999999999987666666778999999999987532 223333333322 3677 778999999854221
Q ss_pred C---CHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 031132 83 V---STEEGEQFAKEH-----GLIFMEASAKTAQNV 110 (165)
Q Consensus 83 ~---~~~~~~~~~~~~-----~~~~~~vSa~~~~~i 110 (165)
. ...++..+.... .++++++||.++.|+
T Consensus 215 ~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 215 LLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 1 112334444443 457999999988643
No 262
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.79 E-value=2.9e-08 Score=79.34 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=79.9
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLIGNKC 75 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 75 (165)
....+.|+|++|+...+..|.+++.++++||||+++++.+ .+.+....+..+..... .+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4456899999999999999999999999999999987532 24444444544443332 579999999999
Q ss_pred CCCC----C------------CC--CCHHHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 76 DLAH----R------------RA--VSTEEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 76 Dl~~----~------------~~--~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
|+.. . +. -+.+.+..+... ..+.++.++|.+..++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9621 1 11 223344443332 112477899999999999999988764
No 263
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.79 E-value=3.3e-08 Score=69.11 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=54.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 34 AGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 34 d~vi~v~D~~~~~s~~~~~~~~~-~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
|++++|+|++++.+.... ++. ..... .++|+++|+||+|+.....+ ......+....+..++.+||.++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 789999999886544321 222 11111 46899999999998432111 1111122223355689999999999999
Q ss_pred HHHHHHHHHH
Q 031132 113 AFIKTAATIY 122 (165)
Q Consensus 113 l~~~l~~~i~ 122 (165)
+++.+.+...
T Consensus 76 L~~~i~~~~~ 85 (155)
T cd01849 76 KESAFTKQTN 85 (155)
T ss_pred HHHHHHHHhH
Confidence 9999887654
No 264
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.9e-08 Score=69.51 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=55.5
Q ss_pred hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCC
Q 031132 29 YYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT 106 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 106 (165)
.++.+|++++|+|++++.. ...+..++. .. ..+.|+++|+||+|+..+... ......+...+....+.+||++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4679999999999988632 223333332 22 245899999999998532111 1111112222222357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 031132 107 AQNVEEAFIKTAATI 121 (165)
Q Consensus 107 ~~~i~~l~~~l~~~i 121 (165)
+.|++++++.+....
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999887643
No 265
>PRK12739 elongation factor G; Reviewed
Probab=98.77 E-value=1.3e-07 Score=80.62 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=53.0
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+..+...+.|+||||..++...+...++.+|++++|+|+++...... ...+..+.. .++|.++++||+|+.
T Consensus 68 ~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 68 CFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred EEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 33445678999999999888888888999999999999987643322 222332222 468999999999985
No 266
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.76 E-value=7.8e-08 Score=74.81 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH-HHHHHH
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFI-KTAATI 121 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~-~l~~~i 121 (165)
.+|+++++||.|+.... +....+.... ..+++.+||+.+.++.++.+ .+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~----~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAE----NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChH----HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 37999999999974321 1111222233 45699999999999999887 466655
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.75 E-value=6.1e-08 Score=80.14 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=55.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+.++++.+.+.+|||||+.+|.......+..+|++|+|+|+++... .....++.... . .++|+++++||+|+..
T Consensus 73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h--cCCCEEEEEECccccC
Confidence 3567778889999999999887766667899999999999987421 12233333222 2 4689999999999853
No 268
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=8.1e-08 Score=81.94 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=54.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+..++..+.||||||+.++...+...++.+|++++|+|+++....... .++..+.. .++|+++++||+|+..
T Consensus 70 ~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 70 VFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 334567799999999998888888899999999999999886544322 23333322 3689999999999864
No 269
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.72 E-value=7.5e-08 Score=68.89 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=49.9
Q ss_pred EEEEEeCCCchhhhhhhHh---hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCC
Q 031132 10 KLQIWDTAGQESFRSITRS---YYRGAAGALLVYDITR-RETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~---~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~ 79 (165)
.+.+.|+||+.+.+..... +...+.+||||+|++. .....++.+++-.+..... ..+|++|+.||.|+..
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 5789999999998774433 4889999999999985 4456666666655544332 5789999999999854
No 270
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.72 E-value=8e-08 Score=71.81 Aligned_cols=123 Identities=13% Similarity=0.184 Sum_probs=85.1
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv 71 (165)
.+.-..+.|+++|++||...+..|-+++.+..++|||+.++.. +.+.+...++..++...- ..+.+|++
T Consensus 196 ~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlF 275 (379)
T KOG0099|consen 196 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILF 275 (379)
T ss_pred EEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEE
Confidence 4555667899999999999999999999999999999998753 223444445555554432 45789999
Q ss_pred eeCCCCCCC----------------------------CCCCHHH--HHHHHH----H---------cCCeEEEecCCCCC
Q 031132 72 GNKCDLAHR----------------------------RAVSTEE--GEQFAK----E---------HGLIFMEASAKTAQ 108 (165)
Q Consensus 72 ~nK~Dl~~~----------------------------~~~~~~~--~~~~~~----~---------~~~~~~~vSa~~~~ 108 (165)
+||.|+..+ ...++.- ...+.. . +.+.++++.|.+.+
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 999998421 0011111 111111 1 12346789999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 031132 109 NVEEAFIKTAATIYKKI 125 (165)
Q Consensus 109 ~i~~l~~~l~~~i~~~~ 125 (165)
||..+|+...+.|....
T Consensus 356 nIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888777643
No 271
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=2.1e-07 Score=71.53 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=81.4
Q ss_pred eCCEEEEEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031132 4 IDNKPIKLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIG 72 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 72 (165)
++.+..++|+.||||.-+ ........-.=+++|+|+||++. ..+.++...++..+.... ..|+++|.
T Consensus 210 fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~ 287 (346)
T COG1084 210 FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVI 287 (346)
T ss_pred eecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEE
Confidence 455667899999999632 11111222224689999999986 356788888888887775 48999999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 73 NKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 73 nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
||.|+.....+ ++.......- +.....+++..+.+++.+-..+.....+...+
T Consensus 288 nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~~~e 341 (346)
T COG1084 288 NKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLE 341 (346)
T ss_pred ecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhchhhh
Confidence 99998543322 2222223333 34488899999999888888877776655444
No 272
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=1.6e-07 Score=71.79 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=60.8
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132 25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 104 (165)
.....++.+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+.+... ...........+.+++.+||
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 345568899999999999876433211 111111 2579999999999843211 11112223334667899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 031132 105 KTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 105 ~~~~~i~~l~~~l~~~i~~~ 124 (165)
.++.|++++++.+.+.+...
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCcccHHHHHHHHHHHHHHh
Confidence 99999999999888776443
No 273
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.68 E-value=1.2e-07 Score=72.23 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=68.8
Q ss_pred EEEEEEEEeCCCchh------hhhh------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 7 KPIKLQIWDTAGQES------FRSI------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~------~~~~------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
+..++.|+||||.-. +..+ ....+.+||.+++|+|+++....- -...+..+..+ ..+|-+++.||
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y--s~ips~lvmnk 194 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY--SKIPSILVMNK 194 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH--hcCCceeeccc
Confidence 345789999999631 1111 123367899999999999632211 11223334444 46899999999
Q ss_pred CCCCCC-------------CCCCHHHHHHHHHHc------------CC---e-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 75 CDLAHR-------------RAVSTEEGEQFAKEH------------GL---I-FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 75 ~Dl~~~-------------~~~~~~~~~~~~~~~------------~~---~-~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.|.... .+++........+.. |+ . +|.+||++|+|++++-++|+.+..
T Consensus 195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 997432 222211111111111 12 2 899999999999999998876653
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.64 E-value=2.1e-07 Score=74.50 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=80.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.++++.+.+.+.||||+-+|.-.-+..++-.|++++++|+...+ ....+..+..... .+.+.|||+||+|.+..+.
T Consensus 62 av~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 62 AVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred eeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCH
Confidence 46677788999999999999998899999999999999998753 2233333333333 3677788899999875442
Q ss_pred C-CHHHHHHHH-------HHcCCeEEEecCCCCC----------CHHHHHHHHHHHHHH
Q 031132 83 V-STEEGEQFA-------KEHGLIFMEASAKTAQ----------NVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~-~~~~~~~~~-------~~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~~ 123 (165)
. -.++...+. .++++|++..|+..|. ++.-+|+.|++++-.
T Consensus 138 ~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 138 DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 1 112223222 2457899999987654 466666666665543
No 275
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.63 E-value=6e-07 Score=69.41 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=78.2
Q ss_pred EEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHAN--ANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~~s---~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl 77 (165)
.|.+=|+||.-+- ..-....++++.++++|+|++..+. .+....+..++..+.. .++|.+||+||+|+
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 4888999987432 2222334678999999999986442 4555555566655543 67899999999997
Q ss_pred CCCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 78 AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
....+.-......+....+.. .+.+||.+++|++++...+.+.+.+...
T Consensus 288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETKA 337 (369)
T ss_pred CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhhh
Confidence 432222222223333344444 2229999999999999999998888763
No 276
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.62 E-value=1.5e-07 Score=64.77 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=51.4
Q ss_pred hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 28 SYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
..++.+|++++|+|++++.+.. .+..++... ..++|+++++||+|+..+.. ...........+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3578999999999998875433 343444322 13689999999999853221 223334455567789999999
Q ss_pred CCCC
Q 031132 106 TAQN 109 (165)
Q Consensus 106 ~~~~ 109 (165)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 277
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.60 E-value=8.1e-07 Score=64.55 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=63.9
Q ss_pred EEEEEeCCCchhhhh-----hhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-
Q 031132 10 KLQIWDTAGQESFRS-----ITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA- 82 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~-----~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~- 82 (165)
.+.+|||+|...... +....+..+|++++|.+.. +... ..++..+... +.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence 589999999754222 2223367889999985432 2222 2233444333 579999999999832111
Q ss_pred ---C---CHHH----HHHHHH----HcC--C-eEEEecCC--CCCCHHHHHHHHHHHHHHH
Q 031132 83 ---V---STEE----GEQFAK----EHG--L-IFMEASAK--TAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ---~---~~~~----~~~~~~----~~~--~-~~~~vSa~--~~~~i~~l~~~l~~~i~~~ 124 (165)
. ..++ .+..+. ..+ . +++-+|+. .+.++..+.+.++..+-+.
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 0 1111 111111 212 3 38888988 5789999888888877653
No 278
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=2.6e-07 Score=65.64 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=60.0
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 031132 24 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 24 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 103 (165)
......+++||.+++|+|++++...... .+.. .. .+.|+++|+||+|+..... ......+....+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 3445668899999999999875432111 1111 11 3578999999999853211 1111122233355689999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 031132 104 AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 104 a~~~~~i~~l~~~l~~~i~ 122 (165)
|+++.|++++...+...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999888753
No 279
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.56 E-value=6e-07 Score=74.82 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=71.5
Q ss_pred EEEEEEeCCCchh------hhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQES------FRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~------~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
-++++.|.||-=. -+...+.|+ .++|++|-|+|+++-+ .... ...+....+.|++++.|+.|.-++
T Consensus 50 ~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLy---ltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 50 HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLY---LTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHH---HHHHHHHcCCCeEEEeccHhhHHh
Confidence 3488999998521 223334443 3579999999999842 1111 111122247899999999997443
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..+ .-+...+.+.+|+|++++||++|.|+++++..+.+.
T Consensus 124 ~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 124 RGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred cCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 322 334556677789999999999999999988887753
No 280
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=5.3e-07 Score=72.79 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=92.9
Q ss_pred eeCCEEEEEEEEeCCCchhh----hhhhHh-----hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQESF----RSITRS-----YYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~----~~~~~~-----~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
+++.+-..+++.||||..+. +..++. ...=..+|+|+.|++. ..|..+...++..+.-.+ .+.|+|+|
T Consensus 209 H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~Ilv 287 (620)
T KOG1490|consen 209 HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILV 287 (620)
T ss_pred hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEE
Confidence 45677788999999997431 111111 1223467889999886 457777777787776665 68999999
Q ss_pred eeCCCCCCCCCCCHHHH---HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132 72 GNKCDLAHRRAVSTEEG---EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 132 (165)
Q Consensus 72 ~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~ 132 (165)
+||+|+.....++.+.. +.+....+++++++|..+.+|+.++-...++.++..+-++.+..
T Consensus 288 lNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 288 LNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred eecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 99999876666655442 23344456899999999999999999999998888766655443
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.7e-07 Score=71.53 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=70.3
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.-..+.|.+.|+||+.+|-.-.-.-...||+.|+|+|+++.+ +|. ..+. ...+.+.. .-..++|+.||+|
T Consensus 79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhc-CCceEEEEEEccc
Confidence 45556678999999999888776666678899999999998863 111 1222 22222222 2346888999999
Q ss_pred CCCCCCCCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132 77 LAHRRAVST----EEGEQFAKEHG-----LIFMEASAKTAQNVEEA 113 (165)
Q Consensus 77 l~~~~~~~~----~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l 113 (165)
+.+=++... .++..+.+..| ++++++|+..|+|+.+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 865211111 12223343433 45999999999998764
No 282
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.54 E-value=1.4e-06 Score=62.76 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=70.7
Q ss_pred EEEEeCCCc----------hhhhhhhHhhhcC---CcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 11 LQIWDTAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 11 ~~l~Dt~G~----------~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
+.|.|.||- +.+..+...|++. -.++++++|+....... ++..|+.. .++|++|++||+
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~ 145 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKA 145 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEcc
Confidence 778999983 5567777777765 47899999998865432 33333333 579999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHc----CCe--EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKEH----GLI--FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~~----~~~--~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
|......... .....+... ... ++..|+.++.|++++...|.+.+.
T Consensus 146 DKi~~~~~~k-~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 146 DKLKKSERNK-QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccCChhHHHH-HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 9865432221 112222222 222 778899999999999888877654
No 283
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.53 E-value=8e-07 Score=68.33 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=60.0
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
....++.+|++++|+|+.++.+... .++..+. .+.|+++|+||+|+..... ......+....+.+++.+||.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence 4556889999999999987643321 1111111 2579999999999843210 112222233446778999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 031132 106 TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 106 ~~~~i~~l~~~l~~~i~~ 123 (165)
++.|++++++.+...+-.
T Consensus 90 ~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 999999999988777644
No 284
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.8e-06 Score=61.05 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=52.2
Q ss_pred EEEEeCCCchhhhhhhHhhhc---CCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCC
Q 031132 11 LQIWDTAGQESFRSITRSYYR---GAAGALLVYDITR-RETFNHLASWLEDARQHA---NANMTIMLIGNKCDLA 78 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~---~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~ 78 (165)
+++.|.||+.+.+.....+++ .+-++|||+|+.- .....+...++-.+.... ...+|++++-||.|+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 689999999999998888888 7999999999764 334555555544443333 3578999999999984
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.52 E-value=9.2e-07 Score=68.71 Aligned_cols=102 Identities=23% Similarity=0.174 Sum_probs=69.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-- 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 85 (165)
+-.|.+-||||++.|......=...||+.|+++|+...- ++..+. ...+.... .=..++++.||+||.+-++...
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHHHH
Confidence 346889999999999876666678899999999996531 222222 22233332 2246889999999975433222
Q ss_pred --HHHHHHHHHcCCe---EEEecCCCCCCHHH
Q 031132 86 --EEGEQFAKEHGLI---FMEASAKTAQNVEE 112 (165)
Q Consensus 86 --~~~~~~~~~~~~~---~~~vSa~~~~~i~~ 112 (165)
.+...|+.++++. ++++||+.|+|+-.
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3345577777754 99999999999643
No 286
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.51 E-value=1.2e-06 Score=67.36 Aligned_cols=112 Identities=23% Similarity=0.188 Sum_probs=75.1
Q ss_pred eCCEEEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcC--CC--------
Q 031132 4 IDNKPIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHAN--AN-------- 65 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~--~~-------- 65 (165)
++++.+.+|+.|+||.-... ...-...++||.+++|+|+....+ .+.+...+...--..+ ++
T Consensus 105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~ 184 (365)
T COG1163 105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE 184 (365)
T ss_pred EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence 56677889999999864321 223455789999999999986554 3333333322111111 00
Q ss_pred -------------------------------------------------------CeEEEEeeCCCCCCCCCCCHHHHHH
Q 031132 66 -------------------------------------------------------MTIMLIGNKCDLAHRRAVSTEEGEQ 90 (165)
Q Consensus 66 -------------------------------------------------------~p~ivv~nK~Dl~~~~~~~~~~~~~ 90 (165)
+|.+++.||.|+.. .+....
T Consensus 185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~ 259 (365)
T COG1163 185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER 259 (365)
T ss_pred cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence 89999999999854 233333
Q ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 91 FAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 91 ~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+.... .++.+||.++.|++++.+.|.+.+-
T Consensus 260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 LARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 33322 7999999999999999999888654
No 287
>PRK01889 GTPase RsgA; Reviewed
Probab=98.50 E-value=5.4e-07 Score=71.24 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=58.7
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEecCCCCC
Q 031132 30 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ 108 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~ 108 (165)
..++|.+++|++++...+...+..++..+... +++.+||+||+||.+.. ......+.. ..+++++.+|+.++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997555555566665555443 67889999999995421 111122211 457889999999999
Q ss_pred CHHHHHHHHH
Q 031132 109 NVEEAFIKTA 118 (165)
Q Consensus 109 ~i~~l~~~l~ 118 (165)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888763
No 288
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=1.8e-06 Score=68.59 Aligned_cols=93 Identities=26% Similarity=0.333 Sum_probs=60.7
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH----HHHHHcC
Q 031132 21 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE----QFAKEHG 96 (165)
Q Consensus 21 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~ 96 (165)
.|.......-...+.+++|+|+.+.. ..|...+.... .+.|+++|+||+||... ....+... .++...+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 45554444433344999999997743 22334444433 36799999999999542 23333333 2344556
Q ss_pred C---eEEEecCCCCCCHHHHHHHHHHH
Q 031132 97 L---IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 97 ~---~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+ .++.+||+++.|++++++.|.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5 48999999999999999998653
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.46 E-value=1.5e-06 Score=63.35 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
.-+.+.++.|..-.....+ .+ +|.+|.|+|+.+..+... .... . -...-++++||+|+........+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~----q--i~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGP----G--ITRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHh----H--hhhccEEEEEhhhccccccccHHHH
Confidence 3456778888432222222 12 688999999987554321 1001 1 1123378899999963212223333
Q ss_pred HHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 89 EQFAKE--HGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 89 ~~~~~~--~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...+.. .+.+++++||++|+|++++|+++.++.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333333 457799999999999999999998754
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.45 E-value=3.7e-07 Score=68.33 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=58.7
Q ss_pred EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 10 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~--------~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.+.++|||||.+....|...- ...-++++++|+....+ ...+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999988766655444 56779999999764322 112222222222222247999999999999652
Q ss_pred CC-------CC------------HHHHHHHHHH---cC-C-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RA-------VS------------TEEGEQFAKE---HG-L-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.. .. ......++.- ++ . .++.+|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 00 0001111111 22 3 599999999999999998876654
No 291
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.44 E-value=2.4e-07 Score=68.30 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=91.0
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv 71 (165)
.++-.++.+.+.|++|+...+..|-+++.+...++|++..+.. +..++-..++..+....= .+.+++++
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF 272 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 272 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence 5677788899999999999999999999999999998876543 333444444444444432 57899999
Q ss_pred eeCCCCCCCC----------------CCCHHHHHHHHHHc----C------CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRR----------------AVSTEEGEQFAKEH----G------LIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 72 ~nK~Dl~~~~----------------~~~~~~~~~~~~~~----~------~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.||.|+.++. ..+...++.+..++ + +..+++.|.+.+||.-+|.++.+.|+...
T Consensus 273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 9999985431 22333344444432 1 23678899999999999999999999876
Q ss_pred hc
Q 031132 126 QD 127 (165)
Q Consensus 126 ~~ 127 (165)
.+
T Consensus 353 Lk 354 (359)
T KOG0085|consen 353 LK 354 (359)
T ss_pred hH
Confidence 54
No 292
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.41 E-value=7.6e-07 Score=76.38 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=53.3
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+++..+.+.+|||||+.+|.......++.+|++++|+|+......... ..+..+.. .+.|.++++||+|..
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhcc
Confidence 677788999999999999888788889999999999999874322221 11222211 357888999999974
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.2e-06 Score=72.11 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=78.2
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC----
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA---- 82 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---- 82 (165)
-+.++||+|++.|..++.....-+|..|+|+|+-+. .+.+.+ +.++. .+.|+||++||+|..-.+.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCC
Confidence 367899999999999999999999999999998764 333333 22322 4789999999999642210
Q ss_pred ---------CCHHH-----------HHHHHHHc------------C--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 83 ---------VSTEE-----------GEQFAKEH------------G--LIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 83 ---------~~~~~-----------~~~~~~~~------------~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
....- +.+|+.+- + +.++++||.+|+||-+++-+|++...+..-++
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 00000 11122210 0 23788999999999999999999888766544
No 294
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.39 E-value=1.7e-06 Score=66.19 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=58.7
Q ss_pred eeCCEEEEEEEEeCCCchhh------------------hh--------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHH
Q 031132 3 TIDNKPIKLQIWDTAGQESF------------------RS--------ITRSYYR--GAAGALLVYDITRRETFNHLASW 54 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~------------------~~--------~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~ 54 (165)
..+|..+.+.+|||+|.... .. .+...+. .+|+++|+++.+...-...-...
T Consensus 57 ~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~ 136 (276)
T cd01850 57 EENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF 136 (276)
T ss_pred EECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHH
Confidence 45677889999999994221 11 1112222 47889999987752211111222
Q ss_pred HHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEecCC
Q 031132 55 LEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 55 ~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
+..+. ..+|+++|+||+|+..... .....++..+..++++++.....
T Consensus 137 lk~l~----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 137 MKRLS----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHh----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 23332 2589999999999854222 22344556677788888876653
No 295
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.7e-06 Score=64.75 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=74.6
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEE 87 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~ 87 (165)
.+.|.|.+|++-.-+....=..--|+.++|++++.+----...+.+..+.-. .-..++++-||.||...... +-++
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 5789999999864332222223349999999998653333344444444333 23578999999999543211 2223
Q ss_pred HHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 88 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 88 ~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
+++|.+-. +.|++++||..+.||+.+++.|.+.|-....
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 44444322 5689999999999999999988887765433
No 296
>PRK00007 elongation factor G; Reviewed
Probab=98.33 E-value=6e-06 Score=70.67 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=51.8
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+..+...+.|.||||..+|.......+..+|++++|+|+......... ..+..+.. .+.|.++++||+|+..
T Consensus 70 ~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 70 CFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred EEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 334456789999999988766666678899999999998876433322 22232322 3689999999999864
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.31 E-value=6.5e-06 Score=64.40 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=70.8
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--C
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S 84 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 84 (165)
..+.+.|.||+|....... ....||.+++|.++.....+..+. ..+. ...-++|+||+|+.+.... .
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRA 215 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHH
Confidence 3567899999997632222 466799999998755443333222 2122 2234789999998643211 1
Q ss_pred HHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132 85 TEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 131 (165)
Q Consensus 85 ~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~ 131 (165)
..+....... +..+++.+||.++.|++++++.|.+.+-.....+.+.
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~ 269 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFA 269 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHH
Confidence 1122222211 1246999999999999999999999876555444443
No 298
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.9e-06 Score=69.43 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=76.6
Q ss_pred eCCEEEEEEEEeCCCchh-hhh--------hhHhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhcC------CCC
Q 031132 4 IDNKPIKLQIWDTAGQES-FRS--------ITRSYYRGAAGALLVYDI--TRRETFNHLASWLEDARQHAN------ANM 66 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~-~~~--------~~~~~~~~ad~vi~v~D~--~~~~s~~~~~~~~~~i~~~~~------~~~ 66 (165)
|+-.++++.+.||+|..+ -.. ..+..+..||++++|+|+ ++-.+...+...+.....-.. ...
T Consensus 311 v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~ 390 (531)
T KOG1191|consen 311 VTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQ 390 (531)
T ss_pred eecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecccccc
Confidence 444556689999999865 111 123447789999999999 443333444444443322221 237
Q ss_pred eEEEEeeCCCCCCC-CCCCHHHHHHHHHHc---CCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 67 TIMLIGNKCDLAHR-RAVSTEEGEQFAKEH---GLI-FMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 67 p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
|++++.||.|+..+ .+... ....+.... .++ +.++|+++++|++.+.+++.+.+...-..
T Consensus 391 ~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 391 RIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred ceEEEechhhccCccccccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 89999999998644 11211 111111111 244 56699999999999999999887765553
No 299
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.28 E-value=1e-05 Score=59.20 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+.+.|.+|.|.-.... .+.-..+..+.|+|..+..... . ... .. ...|.++++||+|+.+.........
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~---~~~-~~--~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--L---KYP-GM--FKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--h---hhH-hH--HhhCCEEEEEHHHccccchhhHHHH
Confidence 3567888888311111 1112345566788887543211 1 111 11 2467899999999964322223333
Q ss_pred HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
....... ..+++++||+++.|++++|+++.+.
T Consensus 172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333 3789999999999999999999774
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.27 E-value=1e-05 Score=69.65 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+++.+.+.|+||||..+|.......++.+|++++|+|+....... ....+..+.. .+.|.++++||+|+.
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence 445778999999999998887888889999999999988753322 2222222222 246789999999974
No 301
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=6.8e-06 Score=62.96 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=67.5
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 22 FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 22 ~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
...+.+.-+.+.|-+++|+.+.+++ +...+..++..+... ++..+|++||+||.++......+........+++++
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 3444455566778888888877764 666777766655544 677788899999965433322345556777899999
Q ss_pred EecCCCCCCHHHHHHHHH
Q 031132 101 EASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 101 ~vSa~~~~~i~~l~~~l~ 118 (165)
.+|++++++++++.+.+.
T Consensus 146 ~~s~~~~~~~~~l~~~l~ 163 (301)
T COG1162 146 FVSAKNGDGLEELAELLA 163 (301)
T ss_pred EecCcCcccHHHHHHHhc
Confidence 999999999999888764
No 302
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=5.3e-06 Score=66.18 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=65.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
|.+++....+++.||||+++|..-+-..+-.+|..+.|+|+...-.-. ... +-..|. .+.|++-++||.|....
T Consensus 74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~K----LfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLK----LFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHH----HHHHHhhcCCceEEEeeccccccC
Confidence 678999999999999999998877666778899999999997642222 212 222232 58999999999998543
Q ss_pred CCCCHHHHHHHHHHcCCeEE
Q 031132 81 RAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (165)
. +.+...+....+++.++
T Consensus 149 d--P~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 149 D--PLELLDEIEEELGIQCA 166 (528)
T ss_pred C--hHHHHHHHHHHhCccee
Confidence 3 44445555555555433
No 303
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.18 E-value=1.4e-05 Score=53.44 Aligned_cols=98 Identities=20% Similarity=0.133 Sum_probs=68.3
Q ss_pred EEeCCCc----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 13 IWDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 13 l~Dt~G~----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
..||+|. ..+.+........+|++++|-.++++.+.-. ..+... ...|+|-+.+|.||.+. ......
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAED--ADISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccch--HhHHHH
Confidence 4788885 3344444556789999999999998744211 112222 34678999999999642 334555
Q ss_pred HHHHHHcCCe-EEEecCCCCCCHHHHHHHHHH
Q 031132 89 EQFAKEHGLI-FMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 89 ~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~ 119 (165)
..+..+.|.. ++++|+.++.|++++++.|..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 6666667754 999999999999999987754
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.15 E-value=3.3e-05 Score=61.96 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHH
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE-AFIKTAA 119 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~-l~~~l~~ 119 (165)
.+|+++|+||.|+.... .....+....+..++.+||..+.++.+ +.+.+.+
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 38999999999974211 112222222344599999999999888 4444444
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.13 E-value=1.8e-05 Score=65.10 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=79.3
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
|+.-.+.+-|.+-. ....+.+.. ..+|++.++||.+++.+|......+...... ...|+++|++|.|+.+..+...
T Consensus 471 g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~ 546 (625)
T KOG1707|consen 471 GQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYS 546 (625)
T ss_pred cccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccC
Confidence 34444555555443 233333333 6899999999999999999888877655444 5799999999999965443333
Q ss_pred HHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 86 EEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 86 ~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
.+...++.+++++ .+.+|..+.-. .++|..|........
T Consensus 547 iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 547 IQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 3336788888887 66677664333 788988888776655
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=4e-05 Score=61.20 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=73.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
..+.|.|++|.+++-.-.-.-+...|..++|+|+++..... ..+.+. +.... .-...++|+||+|+.++.. .....
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~q-tgEhL~-iLdll-gi~~giivltk~D~~d~~r-~e~~i 125 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQ-TGEHLL-ILDLL-GIKNGIIVLTKADRVDEAR-IEQKI 125 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchh-hHHHHH-HHHhc-CCCceEEEEeccccccHHH-HHHHH
Confidence 36889999999988665555567899999999997643221 222222 22222 2234588999999864331 12223
Q ss_pred HHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 89 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 89 ~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+....+ ..+++.+|+++|+||+++-+.|.....
T Consensus 126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 3333333 355899999999999999999998884
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.12 E-value=8.5e-05 Score=56.29 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=67.2
Q ss_pred EEEEEEEeCCCchh-h-----hhhhHhhhc--CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQES-F-----RSITRSYYR--GAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~-~-----~~~~~~~~~--~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+.+.|||||.+ | ..++..-+. ...++++|+|... +.+|-..-.+--.+.-. ...|++++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEeccc
Confidence 35578999999853 1 222222222 4578888888543 33343322222233322 5799999999999
Q ss_pred CCCCCC-----CCHHHHHHHHH--------------------H-cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 77 LAHRRA-----VSTEEGEQFAK--------------------E-HGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 77 l~~~~~-----~~~~~~~~~~~--------------------~-~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+.+..- .+.+..+.... - .++..+-+||.+|.|.+++|.++-..+-+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 854210 00111111111 0 14678899999999999999998776654
No 308
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.05 E-value=7e-05 Score=56.64 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=74.7
Q ss_pred eCCEEEEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 4 IDNKPIKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
++++ .+.+||+||..+ |+.....++...|.++++.++.|+.---+.. ++..+.... ...+++++.|.+|
T Consensus 84 ~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~-~~~~~i~~VtQ~D 159 (296)
T COG3596 84 YDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDED-FLRDVIILG-LDKRVLFVVTQAD 159 (296)
T ss_pred cccc--ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHH-HHHHHHHhc-cCceeEEEEehhh
Confidence 4453 378999999754 7788888999999999999998864211121 222232222 3489999999999
Q ss_pred CCCCC-------CCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 77 LAHRR-------AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 77 l~~~~-------~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
...+. ..+....+++... .-.|++.++...+.|++.+...++..+-
T Consensus 160 ~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 160 RAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 74321 1111122221111 1235888888999999999999887664
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.03 E-value=1.7e-05 Score=61.31 Aligned_cols=105 Identities=13% Similarity=0.024 Sum_probs=65.0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH-
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST- 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~- 85 (165)
..+.+.|.||+|.-.. ....+..+|.++++.+... .+++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHH
Confidence 3566889999985421 1235667899988865443 33443333332 2467899999999864321110
Q ss_pred -HHH----HHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 86 -EEG----EQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 86 -~~~----~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
... ..+... +..+++++||.++.|++++++++.+..-
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 111111 1235899999999999999999998744
No 310
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.01 E-value=2.5e-05 Score=45.03 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 32 GAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 32 ~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
=+++++|++|++.. .+.++-..++..+.... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 46899999999863 46777777888888776 5899999999998
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.01 E-value=2.5e-05 Score=57.63 Aligned_cols=70 Identities=26% Similarity=0.467 Sum_probs=49.1
Q ss_pred EEEEEEeCCCchhh-----hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhcCCCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~-----~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~---~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+.+.+||.+|++.+ .......+++.+++++|||++..+-..++..+-. .+.+.. +...+++...|.||..
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcc
Confidence 46789999999853 2234567899999999999987654444433333 333332 5667888999999964
No 312
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.98 E-value=2.4e-05 Score=68.33 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=51.8
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
..+.+.++||||+.+|......-++.+|++|+|+|+...-..... ..+..+.. .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence 367789999999999988777788999999999999876433322 22232322 468999999999975
No 313
>PTZ00416 elongation factor 2; Provisional
Probab=97.98 E-value=2.2e-05 Score=68.49 Aligned_cols=67 Identities=28% Similarity=0.349 Sum_probs=51.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
...+.|.||||..+|.......++.+|++|+|+|+........ ...+..+.. .+.|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 5678999999999987777778899999999999987543332 222333322 368999999999984
No 314
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.5e-05 Score=64.16 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=70.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
..|+-....+.+.|+||+..|..-.-.-...||+.++|+|++-.. +|+ .++. ...+.+.. .-..++|++||+
T Consensus 248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L-gi~qlivaiNKm 325 (603)
T KOG0458|consen 248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL-GISQLIVAINKM 325 (603)
T ss_pred EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc-CcceEEEEeecc
Confidence 345666778999999998888776555677899999999997632 222 1222 22233333 234688999999
Q ss_pred CCCCCCCCCHHH----HHHHH-HHcC-----CeEEEecCCCCCCHHHH
Q 031132 76 DLAHRRAVSTEE----GEQFA-KEHG-----LIFMEASAKTAQNVEEA 113 (165)
Q Consensus 76 Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~vSa~~~~~i~~l 113 (165)
|+.+=.+...++ +..+. +..| +.+++||+..|+|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 986422222222 33344 3333 46999999999996543
No 315
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.96 E-value=0.00021 Score=51.69 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=64.4
Q ss_pred EEEEEEeCCCchhhh--------hh---hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132 9 IKLQIWDTAGQESFR--------SI---TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKC 75 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~--------~~---~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~ 75 (165)
..+.++||||..... .+ +.....++|+++||+++.+ .+- .....+..+...+. .-.++++++|+.
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 468999999964321 11 1222467899999999887 222 22333444444432 125788999999
Q ss_pred CCCCCCCC------CHHHHHHHHHHcCCeEEEec-----CCCCCCHHHHHHHHHHHHHH
Q 031132 76 DLAHRRAV------STEEGEQFAKEHGLIFMEAS-----AKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 76 Dl~~~~~~------~~~~~~~~~~~~~~~~~~vS-----a~~~~~i~~l~~~l~~~i~~ 123 (165)
|......+ .....+.+....+-.++..+ +..+.+++++++.+.+.+..
T Consensus 127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 96443221 11334455555565665554 34455666666665554443
No 316
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.94 E-value=0.00024 Score=52.75 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=55.5
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCC-CC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRRA-VS 84 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~-~~ 84 (165)
....+.++||+|.. ..+. ...+.+|++++|+|++....... ..++..+.. .+.|. ++|+||+|+.+... ..
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHH
Confidence 44567899999864 2333 34688999999999986433222 222332322 35675 45999999853221 11
Q ss_pred --HHHHHH-HHHH--cCCeEEEecCCCCCC
Q 031132 85 --TEEGEQ-FAKE--HGLIFMEASAKTAQN 109 (165)
Q Consensus 85 --~~~~~~-~~~~--~~~~~~~vSa~~~~~ 109 (165)
...++. +... .+.+++.+||++.-.
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 111111 2211 245699999997643
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.94 E-value=0.00019 Score=47.40 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=40.6
Q ss_pred eCCEEEEEEEEeCCCchh----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 4 IDNKPIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
+++.. +.++||||... +....+. +..+|++++|+|+++... +....++..+. .+.|+++|+|
T Consensus 44 ~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~N 115 (116)
T PF01926_consen 44 YNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLN 115 (116)
T ss_dssp ETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEE
T ss_pred eceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEc
Confidence 34444 46999999742 1123333 489999999999877321 22333344442 4689999999
Q ss_pred C
Q 031132 74 K 74 (165)
Q Consensus 74 K 74 (165)
|
T Consensus 116 K 116 (116)
T PF01926_consen 116 K 116 (116)
T ss_dssp S
T ss_pred C
Confidence 8
No 318
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.92 E-value=7.4e-05 Score=61.30 Aligned_cols=124 Identities=16% Similarity=0.338 Sum_probs=93.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~- 79 (165)
+.++++...+.+.|.+|... .+|-..+|++||||...+..++..+..+...+..+.+ ..+|+++++++.-...
T Consensus 70 ~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~ 144 (749)
T KOG0705|consen 70 VVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK 144 (749)
T ss_pred EEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc
Confidence 56788888888899888443 6677889999999999999999988887777765554 5678888888765432
Q ss_pred -CCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132 80 -RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 130 (165)
Q Consensus 80 -~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~ 130 (165)
.+.+.+.....+.. ...+.+++++|.+|.++...|..+...++..+..++.
T Consensus 145 ~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 145 RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence 23344555554444 4467799999999999999999999988776554443
No 319
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.90 E-value=0.00029 Score=54.66 Aligned_cols=115 Identities=14% Similarity=0.313 Sum_probs=81.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCC----cEEEEEEeCCCh-hhHHHHHHHHHHHHHhcC---C----------------
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGA----AGALLVYDITRR-ETFNHLASWLEDARQHAN---A---------------- 64 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~a----d~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~---~---------------- 64 (165)
.++.+|-.-|...+..+....+... ..+|++.|++++ .-++.+..|..-+..+.. .
T Consensus 100 tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~w 179 (473)
T KOG3905|consen 100 TRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDW 179 (473)
T ss_pred hhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3566787778776666665554432 578889999998 556667666665543322 0
Q ss_pred ------------------------------------------CCeEEEEeeCCCC----CCCCCCCH-------HHHHHH
Q 031132 65 ------------------------------------------NMTIMLIGNKCDL----AHRRAVST-------EEGEQF 91 (165)
Q Consensus 65 ------------------------------------------~~p~ivv~nK~Dl----~~~~~~~~-------~~~~~~ 91 (165)
++|++||.||+|. ..+.+..+ ..++.|
T Consensus 180 QeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF 259 (473)
T KOG3905|consen 180 QEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF 259 (473)
T ss_pred HHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence 0899999999997 23332222 335678
Q ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 92 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 92 ~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+..+|...+.+|++...|++-+...|++.+..
T Consensus 260 CLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 260 CLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred HHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 88999999999999999999998888887653
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00012 Score=57.17 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-C
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-V 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~ 83 (165)
.++..++.+.|.||+...-...-.-..-.|..++|+|+...-.-..+..++.. ... -...+||+||+|+..+.+ .
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-~~~---c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-ELL---CKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-hhh---ccceEEEEeccccccchhhh
Confidence 46678899999999875333222222334888999998764333322222211 111 234677788888643321 1
Q ss_pred C--HHHHHHHHH---Hc----CCeEEEecCCCC----CCHHHHHHHHHHHHHH
Q 031132 84 S--TEEGEQFAK---EH----GLIFMEASAKTA----QNVEEAFIKTAATIYK 123 (165)
Q Consensus 84 ~--~~~~~~~~~---~~----~~~~~~vSa~~~----~~i~~l~~~l~~~i~~ 123 (165)
+ ......+.+ .. +.|++++||..| +++.++.+.|..++..
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 111222222 12 267999999999 5666666666665554
No 321
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00014 Score=62.16 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=53.7
Q ss_pred eCCE-EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 4 IDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+..+ .+.+++.||||+-+|......-++-.|+.++|+|+...-....-.-|.+ +.+ .++|.++++||+|..
T Consensus 70 ~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~---~~vp~i~fiNKmDR~ 141 (697)
T COG0480 70 LFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK---YGVPRILFVNKMDRL 141 (697)
T ss_pred EEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh---cCCCeEEEEECcccc
Confidence 3344 4889999999999999988888999999999999987543332222222 222 579999999999974
No 322
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.82 E-value=0.00012 Score=48.31 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=55.0
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132 25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 104 (165)
+...+++.+++++++|+.++..+++.+ |...+........|.++++||.|+.....+..... ..++++|+
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~ 108 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSA 108 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhC
Confidence 345667889999999999999888765 76666544445678999999999844333333222 24556889
Q ss_pred CCCCCHH
Q 031132 105 KTAQNVE 111 (165)
Q Consensus 105 ~~~~~i~ 111 (165)
+++.|+.
T Consensus 109 ~~~~~~~ 115 (124)
T smart00010 109 KTPEEGE 115 (124)
T ss_pred CCcchhh
Confidence 9999874
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=4.7e-05 Score=63.70 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=55.3
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+++.+.+++.||+|+-.|......-++-+|++++|+|+...-.++.-+.+...+. ...|+++++||.|+
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 36778889999999999998888888999999999999988766553332222222 35899999999995
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.60 E-value=0.00041 Score=52.00 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=44.9
Q ss_pred EEEEEEeCCCchh-------------hhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 9 IKLQIWDTAGQES-------------FRSITRSYYR-GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-------------~~~~~~~~~~-~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
..+.+.||||... ...+...|++ ..+++++|+|++....-.+...+...+.. .+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 3678999999742 2345667777 45699999998764322222222222222 46899999999
Q ss_pred CCCCCC
Q 031132 75 CDLAHR 80 (165)
Q Consensus 75 ~Dl~~~ 80 (165)
.|...+
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998643
No 325
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.56 E-value=0.00023 Score=49.90 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=44.8
Q ss_pred EEEEEeCCCchh----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 10 KLQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 10 ~~~l~Dt~G~~~----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.+.|+||||... ...++..++..+|++|+|.++++.-+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478999999843 3467888999999999999999865545554444444333 34488888984
No 326
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.53 E-value=0.0021 Score=51.05 Aligned_cols=109 Identities=18% Similarity=0.108 Sum_probs=65.4
Q ss_pred EEEEEeCCCchhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--H
Q 031132 10 KLQIWDTAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T 85 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~--~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~ 85 (165)
.+.|.||.|++.|-. +.-.+-...|-.++++.+++..+- ..++.+-.+.. .+.|++++.||+|+..+..+. .
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence 478999999998733 333445578999999999886432 22232322222 378999999999985431100 0
Q ss_pred HHHH----------------------HHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 86 EEGE----------------------QFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 86 ~~~~----------------------~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+++. ..+-+.+ .|++.+|+.+|+|++-+.+ +...+-+
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~ 339 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPK 339 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCc
Confidence 1111 1111122 4799999999999764443 3333333
No 327
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0013 Score=49.23 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=71.4
Q ss_pred EEEEEEEEeCCCchhhhh---hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC-CC
Q 031132 7 KPIKLQIWDTAGQESFRS---ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA-HR 80 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~-~~ 80 (165)
--+.+++||.|||-.+-. -.+..++.+-++|||+|+-+.. .+.+..+...+.+.-. +++-+=|++.|.|-. ++
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 346789999999965422 2466789999999999986542 3333333333333322 567778889999953 22
Q ss_pred CCC-CHHHHHH----HHHHc---CC--eEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 81 RAV-STEEGEQ----FAKEH---GL--IFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~-~~~~~~~----~~~~~---~~--~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
..+ +...+.+ -.... ++ .++.+|-. ..+|-+.|..+++.++.++
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHhhhc
Confidence 111 1111111 11112 23 36667766 4689999999999887754
No 328
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00014 Score=55.99 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=67.6
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEE 87 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~ 87 (165)
.+.|.|.+|++-.-+....-..-.|+.++++..+..---....+.+..+.-. .-..++++-||.||..+.+.. -++
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhhHHHHHHHHHH
Confidence 3578999999864332221122348888888766421111122222333222 125789999999997544321 123
Q ss_pred HHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 88 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 88 ~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
++.|.... +.|++++||.-++||+.+.+.|+..|-
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 34444432 578999999999999999888887664
No 329
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.42 E-value=0.0038 Score=51.23 Aligned_cols=116 Identities=17% Similarity=0.323 Sum_probs=77.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCCChhh-HHHHHHHHHHHHHhcC-------------------
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDITRRET-FNHLASWLEDARQHAN------------------- 63 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~------------------- 63 (165)
..++.+|-..|...+..+....+.. --.|++|+|.+.+-. ++.+..|+..+..+..
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~ 151 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ 151 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3568999998877777777665553 368899999998733 2333333332221110
Q ss_pred -------------------------------------------CCCeEEEEeeCCCCC----CCCCCC-------HHHHH
Q 031132 64 -------------------------------------------ANMTIMLIGNKCDLA----HRRAVS-------TEEGE 89 (165)
Q Consensus 64 -------------------------------------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~ 89 (165)
.++|++||.+|+|.. .+.... ...++
T Consensus 152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR 231 (472)
T PF05783_consen 152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR 231 (472)
T ss_pred HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence 017999999999962 111111 22356
Q ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 90 QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 90 ~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.++..+|.-.+.+|++...|++-++..|.+.+..
T Consensus 232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred HHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 6788899999999999999998888776666543
No 330
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00099 Score=51.13 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC---CCH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VST 85 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~ 85 (165)
.+-..|+||+.+|-...-.-....|+.|+|+.+++.+-- ..+..+- +.++ -++| ++++.||+|+.+..+ +-.
T Consensus 76 hyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiL-larq--vGvp~ivvflnK~Dmvdd~ellelVe 151 (394)
T COG0050 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHIL-LARQ--VGVPYIVVFLNKVDMVDDEELLELVE 151 (394)
T ss_pred eEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhh-hhhh--cCCcEEEEEEecccccCcHHHHHHHH
Confidence 345799999998866444445678999999999985421 1111111 1122 4675 566899999975332 223
Q ss_pred HHHHHHHHHcCCe-----EEEecCC
Q 031132 86 EEGEQFAKEHGLI-----FMEASAK 105 (165)
Q Consensus 86 ~~~~~~~~~~~~~-----~~~vSa~ 105 (165)
.+++.+...++++ ++.-||+
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhh
Confidence 3466677777654 6666765
No 331
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.32 E-value=0.00059 Score=55.69 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=53.8
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCC
Q 031132 20 ESFRSITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL 97 (165)
Q Consensus 20 ~~~~~~~~~~~~~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 97 (165)
+-|+.+|+- ++.+|+||.++|+.++--| .++..++..+. ..+-.+|+.||.||....+ ......+....++
T Consensus 163 E~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni 235 (562)
T KOG1424|consen 163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI 235 (562)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCc
Confidence 446777774 7899999999999997543 34444555443 3366888999999954221 1222334555678
Q ss_pred eEEEecCCC
Q 031132 98 IFMEASAKT 106 (165)
Q Consensus 98 ~~~~vSa~~ 106 (165)
++++.||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999876
No 332
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.28 E-value=0.0021 Score=49.94 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=42.1
Q ss_pred EEEEEEEeCCCchhhhhhhH---hhhc------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITR---SYYR------GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~---~~~~------~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D 76 (165)
...+.+|||||..+...... ..++ +.|+++||..++.....+.-...+..+...+. .-.+.+|+.|+.|
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 35789999999865422211 1122 68999999665432211122233444444432 2357899999999
Q ss_pred CCC
Q 031132 77 LAH 79 (165)
Q Consensus 77 l~~ 79 (165)
...
T Consensus 165 ~~~ 167 (313)
T TIGR00991 165 FSP 167 (313)
T ss_pred cCC
Confidence 753
No 333
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.22 E-value=0.0043 Score=44.09 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=58.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
..+.+.++||++.... .....+..+|.+++++.++. .+...+..++..+... +.|+.+|+||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 5677899999966432 33445789999999999874 3556666666655443 5678899999996321 234
Q ss_pred HHHHHHHHcCCeEE
Q 031132 87 EGEQFAKEHGLIFM 100 (165)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (165)
+...+.+..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 55666777787754
No 334
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.21 E-value=0.0047 Score=49.85 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEEEEeCCCchhhhh-------h----------------------hHhhhc-CCcEEEEEE-eCCC----hhhHH
Q 031132 5 DNKPIKLQIWDTAGQESFRS-------I----------------------TRSYYR-GAAGALLVY-DITR----RETFN 49 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~-------~----------------------~~~~~~-~ad~vi~v~-D~~~----~~s~~ 49 (165)
++-...+.|.||+|...-.+ . ++..+. .+|+.|+|. |.+- +..+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 45567899999998632110 0 334455 889999998 7741 11122
Q ss_pred H-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 50 H-LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 50 ~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
+ -..++..+.. .++|+++++||.|-... .+......+..+++.+++.+|+.
T Consensus 167 ~aEe~~i~eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 167 EAEERVIEELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHHHHHHHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence 2 2234444443 37999999999993221 13344445556678887777755
No 335
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00041 Score=55.49 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=65.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+++|++..++.++||+|+-+|+-..+.+++--|+++.|||++..-.-..+--|.+. . ..++|-..++||+|.....
T Consensus 95 v~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-d---k~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 95 VNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-D---KFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-c---ccCCchhhhhhhhhhhhhh
Confidence 57899999999999999999999889999999999999999875433333333322 1 1468989999999975322
Q ss_pred CCCHHHHHHHHHHcCCe
Q 031132 82 AVSTEEGEQFAKEHGLI 98 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (165)
-...+...-++++..
T Consensus 171 --fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 171 --FENAVDSIEEKLGAK 185 (753)
T ss_pred --hhhHHHHHHHHhCCc
Confidence 122334444556655
No 336
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.10 E-value=0.0032 Score=50.26 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=64.8
Q ss_pred hhhHhh---hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 24 SITRSY---YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 24 ~~~~~~---~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
.+|... +..+|++|-|+|+.|+-.. -...+....+.-.+....|+|+||+||..-. ++..=+..+...+-.--|
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGT--rc~~ve~ylkke~phKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGT--RCKHVEEYLKKEKPHKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCccc--ccHHHHHHHhhcCCcceeEEEeeccccccHH-HHHHHHHHHhhhCcceee
Confidence 345444 4578999999999997321 1112222222222567899999999995422 112222233333333356
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCC
Q 031132 101 EASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR 153 (165)
Q Consensus 101 ~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (165)
..|..+..|-.. +-.|++++-+...++ .+.+.|-|+=|-+|+
T Consensus 279 HAsi~nsfGKga-lI~llRQf~kLh~dk----------kqISVGfiGYPNvGK 320 (572)
T KOG2423|consen 279 HASINNSFGKGA-LIQLLRQFAKLHSDK----------KQISVGFIGYPNVGK 320 (572)
T ss_pred ehhhcCccchhH-HHHHHHHHHhhccCc----------cceeeeeecCCCCch
Confidence 677667777444 445566666555432 234555566665554
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.09 E-value=0.0013 Score=50.57 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
...-++|+||+|+........+........ ...+++.+||++|+|+++++++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 356788999999954211122223333333 25679999999999999999999764
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.96 E-value=0.0019 Score=46.64 Aligned_cols=79 Identities=23% Similarity=0.151 Sum_probs=50.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEecCCCCCCH
Q 031132 34 AGALLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HGLIFMEASAKTAQNV 110 (165)
Q Consensus 34 d~vi~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i 110 (165)
+.-|+|+|.+..+..- ++ ....-..=++|+||.||...-..+.+....-+.+ .+.+++++|+++|+|+
T Consensus 119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 3778888887653111 11 1100124578899999954333333433333333 3578999999999999
Q ss_pred HHHHHHHHHHH
Q 031132 111 EEAFIKTAATI 121 (165)
Q Consensus 111 ~~l~~~l~~~i 121 (165)
++++.++....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 339
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.93 E-value=0.0045 Score=49.23 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=38.8
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 21 SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 21 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.|.......++.+|+||.|+|+.|+.+.. ++..++.. .. .+...|+|+||.||..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~--~~--gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ--AH--GNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh--cc--CCceEEEEeehhccCC
Confidence 45666677788999999999999986532 33333221 11 4588999999999953
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.011 Score=46.30 Aligned_cols=94 Identities=22% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC---CCHHHHH
Q 031132 13 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA---VSTEEGE 89 (165)
Q Consensus 13 l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~ 89 (165)
=.|+||+.+|-...-.=...-|+.|+|+.++|.+ ....++.+-...+. .=..+++++||.|+.++.+ +-+-+.+
T Consensus 121 H~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 121 HTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred cCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHH
Confidence 3788999887553333345669999999999853 23333333333333 2235788899999864322 2223456
Q ss_pred HHHHHcCC-----eEEEecC---CCCCC
Q 031132 90 QFAKEHGL-----IFMEASA---KTAQN 109 (165)
Q Consensus 90 ~~~~~~~~-----~~~~vSa---~~~~~ 109 (165)
++...+++ |++.-|| +.|.+
T Consensus 198 ElLse~gf~Gd~~PvI~GSAL~ALeg~~ 225 (449)
T KOG0460|consen 198 ELLSEFGFDGDNTPVIRGSALCALEGRQ 225 (449)
T ss_pred HHHHHcCCCCCCCCeeecchhhhhcCCC
Confidence 67777764 5777664 45644
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.79 E-value=0.017 Score=44.49 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=67.8
Q ss_pred EEEEEEEeCCC--chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 8 PIKLQIWDTAG--QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G--~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
.+-+.|.+|-| |.+ -....-+|.+++|.-+.-.+....++ ..+.. +-=++|+||.|..... ...
T Consensus 143 G~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimE-----iaDi~vINKaD~~~A~-~a~ 208 (323)
T COG1703 143 GYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIK---AGIME-----IADIIVINKADRKGAE-KAA 208 (323)
T ss_pred CCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHH---hhhhh-----hhheeeEeccChhhHH-HHH
Confidence 34466777764 443 33456789999988776654444333 33322 2346788999964321 111
Q ss_pred HHHHHHHHH---------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132 86 EEGEQFAKE---------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 131 (165)
Q Consensus 86 ~~~~~~~~~---------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~ 131 (165)
.+....... +.-+++.+||.+|+|++++++.+.++.......+.+.
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~~ 263 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFT 263 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 111111111 1235999999999999999999999888877776553
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.78 E-value=0.0036 Score=44.58 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=27.5
Q ss_pred cEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 34 AGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 34 d~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
|++++|+|+.++.+. .++... +. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~---~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEA---VL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHH---HH-hccCCCCEEEEEehhhcCC
Confidence 789999999886332 222222 11 1114689999999999953
No 343
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.77 E-value=0.023 Score=41.75 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=60.3
Q ss_pred eCCEEEEEEEEeCCCchhh-------hh-h---hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEE
Q 031132 4 IDNKPIKLQIWDTAGQESF-------RS-I---TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIML 70 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~-------~~-~---~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~iv 70 (165)
++|. .+.++||||..+. .. + ......+.+++++|+.... -+ +.....+..+...+. .-..++|
T Consensus 46 ~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t-~~~~~~l~~l~~~FG~~~~k~~iv 121 (212)
T PF04548_consen 46 VDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FT-EEDREVLELLQEIFGEEIWKHTIV 121 (212)
T ss_dssp ETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred ecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-ch-HHHHHHHHHHHHHccHHHHhHhhH
Confidence 4554 4789999995321 11 1 1223457899999999883 22 222233344444432 1246888
Q ss_pred EeeCCCCCCCCCCC-------HHHHHHHHHHcCCeEEEecCC------CCCCHHHHHHHHHHHHH
Q 031132 71 IGNKCDLAHRRAVS-------TEEGEQFAKEHGLIFMEASAK------TAQNVEEAFIKTAATIY 122 (165)
Q Consensus 71 v~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~vSa~------~~~~i~~l~~~l~~~i~ 122 (165)
|.|..|......+. ....+.+....+-.|+..+.. ....+.++++.+-+.+.
T Consensus 122 vfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 122 VFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp EEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 99999865443311 122445566667778777655 12235555555444433
No 344
>PTZ00258 GTP-binding protein; Provisional
Probab=96.71 E-value=0.016 Score=46.54 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=27.8
Q ss_pred CeEEEEeeCC--CCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCC
Q 031132 66 MTIMLIGNKC--DLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQ 108 (165)
Q Consensus 66 ~p~ivv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~ 108 (165)
+|+++++|+. |+.....-....+..++... +.+++.+||+...
T Consensus 221 KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 221 KPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred CCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 8999999999 76222212234455555566 4789999976443
No 345
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.62 E-value=0.013 Score=44.20 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=41.1
Q ss_pred EEEEEEeCCCchhhh--h-----h---hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031132 9 IKLQIWDTAGQESFR--S-----I---TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~--~-----~---~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK 74 (165)
..+.+|||||..... . . ...+++ ..|+++||..++....-......++.+...+. .-.++++|.||
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~ 158 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTH 158 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeC
Confidence 468999999976431 0 1 122333 57889998766643211122234444444332 12579999999
Q ss_pred CCCC
Q 031132 75 CDLA 78 (165)
Q Consensus 75 ~Dl~ 78 (165)
+|..
T Consensus 159 ~d~~ 162 (249)
T cd01853 159 AASS 162 (249)
T ss_pred CccC
Confidence 9974
No 346
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.56 E-value=0.0087 Score=46.89 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH-HHHHH
Q 031132 17 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE-QFAKE 94 (165)
Q Consensus 17 ~G~-~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~ 94 (165)
+|+ .++.......+..+|+|+-|+|+.++.+... ..+.... .+.|.++|+||.||..... ..... .+..+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~~~~--~~~W~~~~~~~ 89 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAPKEV--TKKWKKYFKKE 89 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCCHHH--HHHHHHHHHhc
Confidence 454 4566677778999999999999999764431 1222222 3456699999999954332 22222 33334
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHH
Q 031132 95 HGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 95 ~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
.+...+.+++..+.+...+...+.
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred CCCccEEEEeecccCccchHHHHH
Confidence 467788888888877766664333
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.36 E-value=0.0023 Score=48.30 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=61.2
Q ss_pred EEEEeCC--CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 11 LQIWDTA--GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 11 ~~l~Dt~--G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+.|.+|- ||.+ -....-+|.+++|.-+.-.+....++. .+.. +.=++|.||.|+.... ....+.
T Consensus 124 ~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE-----iaDi~vVNKaD~~gA~-~~~~~l 189 (266)
T PF03308_consen 124 VIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKA---GIME-----IADIFVVNKADRPGAD-RTVRDL 189 (266)
T ss_dssp EEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-T---THHH-----H-SEEEEE--SHHHHH-HHHHHH
T ss_pred EEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhh---hhhh-----hccEEEEeCCChHHHH-HHHHHH
Confidence 4566665 4554 334667899999998876544443322 1222 2346778999964321 112222
Q ss_pred HHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 89 EQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 89 ~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
...... +.-+++.+||.++.|++++++.|.+.--.....+.
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~ 237 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGE 237 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcch
Confidence 222221 12469999999999999999999886665555443
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.023 Score=45.29 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=60.4
Q ss_pred EEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC----
Q 031132 10 KLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV---- 83 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---- 83 (165)
.+.|+|.+|..+|-...-+-+. ..|...+|+.++..-.. ..++.+..+.. .++|++++.+|+|+.....+
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH---hCCCeEEEEEeeccccchhHHHHH
Confidence 4789999999998664333222 35777888887654322 12233333332 37999999999999643111
Q ss_pred --------------------CHHHHHHHHHH----cCCeEEEecCCCCCCHHHHH
Q 031132 84 --------------------STEEGEQFAKE----HGLIFMEASAKTAQNVEEAF 114 (165)
Q Consensus 84 --------------------~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~ 114 (165)
+..++-..+++ .=.|++-+|+.+|+|+.-+-
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 11122222222 22468889999999976543
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.038 Score=46.94 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=57.8
Q ss_pred EEEEeCCCch---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 11 LQIWDTAGQE---SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 11 ~~l~Dt~G~~---~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+.+.|.||.+ ......-.+...+|++|||.++.+.-+..+. ..+......+..++|+-||+|.....+...+.
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCCcEEEEechhhhhcccHHHHHH
Confidence 5688999875 3455556778899999999998875433332 33333332345578888999986554444444
Q ss_pred HHHHHHHcC--------CeEEEecCCC
Q 031132 88 GEQFAKEHG--------LIFMEASAKT 106 (165)
Q Consensus 88 ~~~~~~~~~--------~~~~~vSa~~ 106 (165)
+......++ -.+++|||+.
T Consensus 284 V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 284 VLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 444333332 2488899763
No 350
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.01 Score=47.13 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=47.7
Q ss_pred EEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 10 KLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.+.||+|.-. |....+=+...+|.||++||+..-+--++....+..+..+ .-.+-||.||.|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence 468899999532 3445666788999999999987655455555555555444 34677889999975
Q ss_pred C
Q 031132 79 H 79 (165)
Q Consensus 79 ~ 79 (165)
+
T Consensus 225 d 225 (532)
T KOG1954|consen 225 D 225 (532)
T ss_pred C
Confidence 4
No 351
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.23 E-value=0.076 Score=37.76 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=63.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 031132 32 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 111 (165)
Q Consensus 32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 111 (165)
..|.|+|++|.+...|+.....-+..+......++-++++ +-....+...+..+.+..++..+..|++++--.+.++..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~-t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLA-TNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEE-cCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 4699999999999999999988888776554445555554 444444456688999999999999999988776655544
Q ss_pred HHHHHHHH
Q 031132 112 EAFIKTAA 119 (165)
Q Consensus 112 ~l~~~l~~ 119 (165)
.+=..|++
T Consensus 143 ~lAqRLL~ 150 (176)
T PF11111_consen 143 SLAQRLLR 150 (176)
T ss_pred HHHHHHHH
Confidence 44444433
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.018 Score=49.31 Aligned_cols=69 Identities=26% Similarity=0.271 Sum_probs=49.3
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
-.+.+.+.++|+||+-+|........+=+|+.++++|+...-...... .+...+. .+...++|+||+|.
T Consensus 68 ~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~~---~~~~~~lvinkidr 136 (887)
T KOG0467|consen 68 LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI---EGLKPILVINKIDR 136 (887)
T ss_pred ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHHH---ccCceEEEEehhhh
Confidence 346678999999999999998888888999999999987643222111 1111111 24667888999993
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.049 Score=45.78 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=51.3
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
-++.+.+.++||||+-+|.-.-+.-++--|+.|+|+|+...-.-....-|.+ +.+ .++|.+.+.||.|....
T Consensus 100 ~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 100 TWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMGA 171 (721)
T ss_pred eeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcCC
Confidence 3457889999999998887666667778899999999876432222222222 222 58999999999997543
No 354
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.96 E-value=0.084 Score=42.19 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=49.4
Q ss_pred EEEEEeCCCchhhhhhh-----HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC------
Q 031132 10 KLQIWDTAGQESFRSIT-----RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA------ 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~-----~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~------ 78 (165)
.+.+||.||.....-.. ..-+..-|.+|++.+-. |.+..-++....+. .++|+++|-||.|..
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~ 160 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERR 160 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHC
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhc
Confidence 37899999863221112 22355679888877643 33333333222222 478999999999951
Q ss_pred -CCCCCCHHH----HHHHHHH----cCC---eEEEecCCC--CCCHHHHHHHHHHHH
Q 031132 79 -HRRAVSTEE----GEQFAKE----HGL---IFMEASAKT--AQNVEEAFIKTAATI 121 (165)
Q Consensus 79 -~~~~~~~~~----~~~~~~~----~~~---~~~~vSa~~--~~~i~~l~~~l~~~i 121 (165)
.++..+.++ ++..+.+ .++ ++|.+|..+ ...+..+.+.|.+.+
T Consensus 161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 122333322 2222221 243 388899875 455666766666544
No 355
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.75 E-value=0.02 Score=44.73 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=73.4
Q ss_pred EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe----EEEEeeCCC
Q 031132 10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT----IMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~D 76 (165)
.+.+.||-|.-. |.+..+ ....+|.++-|.|.+++..-......+.-+....-+..| ++=|-||.|
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 367889988632 333333 367899999999999987665555555544444222223 344678888
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcc
Q 031132 77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYG 138 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~ 138 (165)
..... ... + ..-.+.+||.+|+|.+++++.+-..+...-.-.+.-.+.+..+
T Consensus 306 ~e~~~-~e~-------E--~n~~v~isaltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d~gd 357 (410)
T KOG0410|consen 306 YEEDE-VEE-------E--KNLDVGISALTGDGLEELLKAEETKVASETTVDEDQLRNDDGD 357 (410)
T ss_pred ccccc-Ccc-------c--cCCccccccccCccHHHHHHHHHHHhhhhheeeeEEeecCCCc
Confidence 64322 111 1 1126779999999999999988887766544444444444443
No 356
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.67 E-value=0.19 Score=38.19 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=34.4
Q ss_pred CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
++++.|.||+|. ++.+++..++.+.+ .+-+|...+-|++.+++.+-+.+.
T Consensus 239 ~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 567777777774 45666666665443 444677888899998888877654
No 357
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.033 Score=46.00 Aligned_cols=81 Identities=23% Similarity=0.230 Sum_probs=54.1
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-CCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-HRRAV 83 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-~~~~~ 83 (165)
++..+.+.++|.+|+-+|.+.....++-.|+.++|+|+-+.--...---+.+.+. ..+..+++.||.|.. -+-++
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQL 169 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcC
Confidence 5667889999999999999988888999999999999877532221111112222 234456678999951 12344
Q ss_pred CHHHHH
Q 031132 84 STEEGE 89 (165)
Q Consensus 84 ~~~~~~ 89 (165)
+.++..
T Consensus 170 ~~EeLy 175 (842)
T KOG0469|consen 170 SQEELY 175 (842)
T ss_pred CHHHHH
Confidence 555443
No 358
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.49 E-value=0.13 Score=39.30 Aligned_cols=98 Identities=18% Similarity=0.074 Sum_probs=57.6
Q ss_pred EEEEEEEeCCCchhhhhhh----Hh---hh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 8 PIKLQIWDTAGQESFRSIT----RS---YY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~----~~---~~-----~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.+.+.+.||+|........ .. .. ..+|.+++|+|++... +.+. ....+.+.. .+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 4568899999986432221 11 11 2389999999997532 2222 223333222 2457788999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l 117 (165)
|-... .-.........+.|+.+++ +|++++++-..-
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~ 263 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFD 263 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCC
Confidence 96332 1233444556689988887 788877664433
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.22 Score=39.29 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred EEEEEEeCCCchhhhh-h---hHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS-I---TRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~-~---~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.+.||+|...... + ...+ .-+.|.+++|+|++.... .......+.... ..--+++||.|-....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCCCc-
Confidence 4589999999863211 1 1222 235789999999976432 222222232221 2356778999974322
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
-.+..++...+.|+.+++ +|++++++...=-+.+..+
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~ 332 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK 332 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence 123334455689988887 7899888765544444443
No 360
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.25 E-value=0.09 Score=48.09 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=46.5
Q ss_pred EEEEeCCCch--------hhhhhhHhhhc---------CCcEEEEEEeCCChh-----h----HHHHHHHHHHHHHhcCC
Q 031132 11 LQIWDTAGQE--------SFRSITRSYYR---------GAAGALLVYDITRRE-----T----FNHLASWLEDARQHANA 64 (165)
Q Consensus 11 ~~l~Dt~G~~--------~~~~~~~~~~~---------~ad~vi~v~D~~~~~-----s----~~~~~~~~~~i~~~~~~ 64 (165)
-.++||+|.- .....|..++. ..+|||+++|+++-- . -..++..+.++......
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3589999831 22344555433 579999999987531 1 12445566666666667
Q ss_pred CCeEEEEeeCCCCCC
Q 031132 65 NMTIMLIGNKCDLAH 79 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~ 79 (165)
..||+|+.||+|+..
T Consensus 243 ~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 243 RFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCEEEEEecchhhc
Confidence 899999999999864
No 361
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.22 E-value=0.3 Score=38.97 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred CeEEEEeeCCCCC-CCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 66 MTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 66 ~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
+|+++++|+.|.. ....-....+..++...+.+++.+||.
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 8999999999852 111122344555666678889999975
No 362
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.20 E-value=0.092 Score=39.25 Aligned_cols=77 Identities=26% Similarity=0.280 Sum_probs=47.4
Q ss_pred EEEEEEeC-CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCCCCCCCHH
Q 031132 9 IKLQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 9 ~~~~l~Dt-~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
..+.+.|| +|.+.+.. ...+++|.+|+|+|++- .++........ +... .+ .++.+|+||.|-. ..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e--lg~k~i~~V~NKv~e~------e~ 200 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE--LGIKRIFVVLNKVDEE------EE 200 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH--hCCceEEEEEeeccch------hH
Confidence 45678887 57665543 44678999999999874 34443333222 2222 24 7899999999842 23
Q ss_pred HHHHHHHHcCCe
Q 031132 87 EGEQFAKEHGLI 98 (165)
Q Consensus 87 ~~~~~~~~~~~~ 98 (165)
.....+...+.+
T Consensus 201 ~~~~~~~~~~~~ 212 (255)
T COG3640 201 LLRELAEELGLE 212 (255)
T ss_pred HHHhhhhccCCe
Confidence 334445555554
No 363
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.53 Score=37.49 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=28.5
Q ss_pred CeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEecCC
Q 031132 66 MTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 66 ~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~ 105 (165)
+|+++++||.|...... + ...+..++...+.+++.+||.
T Consensus 207 KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 207 KPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred CCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence 89999999999753321 2 345566666777889999975
No 364
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=95.01 E-value=0.073 Score=40.58 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=52.3
Q ss_pred CCcEEEEEEeCCCh-----h--hHH----HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----CCCHHHHHHHHHHc
Q 031132 32 GAAGALLVYDITRR-----E--TFN----HLASWLEDARQHANANMTIMLIGNKCDLAHRR-----AVSTEEGEQFAKEH 95 (165)
Q Consensus 32 ~ad~vi~v~D~~~~-----~--s~~----~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~ 95 (165)
..+|||+++|+++- . .+. .++.-+..+........||+|++||+|+...- .++.++. .+.+
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~l 101 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQVL 101 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCCc
Confidence 45999999997631 1 111 23334455555555689999999999986432 1222222 1223
Q ss_pred CCeEEEecCCCCCC---HHHHHHHHHHHHHHHHhc
Q 031132 96 GLIFMEASAKTAQN---VEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 96 ~~~~~~vSa~~~~~---i~~l~~~l~~~i~~~~~~ 127 (165)
|+.+-.-....... +.+.|+.+...+..+...
T Consensus 102 G~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 136 (266)
T PF14331_consen 102 GFTFPYDEDADGDAWAWFDEEFDELVARLNARVLE 136 (266)
T ss_pred ccccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 54422222233334 777777777766665443
No 365
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.90 E-value=0.15 Score=34.79 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=43.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
+.+.++|+++.. .......+..+|.++++.+++. .++..+...+..+.... ...++.++.|+.+-
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 457899998753 2333567889999999999864 44554445555554332 34567789999974
No 366
>PHA02518 ParA-like protein; Provisional
Probab=94.84 E-value=0.32 Score=35.12 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=41.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMT-IMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 77 (165)
.+.+.++|++|.. .......+..+|.+|+++.++.. .....+..++..+... ..+.| ..++.|+.+-
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV-TDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh-CCCCceEEEEEeccCC
Confidence 4678999999874 45566778899999999988742 2233343444433222 22344 4566777653
No 367
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.63 E-value=0.67 Score=39.06 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=56.3
Q ss_pred EEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132 10 KLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKC 75 (165)
Q Consensus 10 ~~~l~Dt~G~-------------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 75 (165)
+..+.|.||- +....+...|..+..++|+++-- .|.+.-+..+..+...+. .+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3567898884 23566788999999999999832 223333334444444444 578899999999
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKE 94 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~ 94 (165)
|+.++...++..++....-
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9976666677777766543
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.57 E-value=0.43 Score=37.42 Aligned_cols=106 Identities=19% Similarity=0.127 Sum_probs=61.0
Q ss_pred EEEEEEEEeCCCchhhhh----hhHhh--------hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 7 KPIKLQIWDTAGQESFRS----ITRSY--------YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~----~~~~~--------~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
..+.+.+.||+|...... ....+ -...+.+++|+|++... +.+... ..+.... .+.-+|.||
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTK 268 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTK 268 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEEC
Confidence 345689999999743211 11111 12468899999998642 223221 2222221 345678999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.|-.... -.+..++...++|+.+++ +|++++++-..--+.+...
T Consensus 269 lD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~~~ 312 (318)
T PRK10416 269 LDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFVDA 312 (318)
T ss_pred CCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHHHH
Confidence 9953221 233444566799988887 7888877654444444443
No 369
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.51 E-value=0.78 Score=32.04 Aligned_cols=84 Identities=12% Similarity=-0.030 Sum_probs=51.1
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 89 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 89 (165)
.+.++|+++.... .....+..+|.+|++++++. .++..+..++..+... ......++.|+.+-... .......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 4789999876433 23445679999999998764 3455555555555442 22456788999985321 2222234
Q ss_pred HHHHHcCCeEE
Q 031132 90 QFAKEHGLIFM 100 (165)
Q Consensus 90 ~~~~~~~~~~~ 100 (165)
.+...++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 370
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=94.12 E-value=0.16 Score=40.61 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=65.4
Q ss_pred EEEEEeCCCchhhhhhh--HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CH
Q 031132 10 KLQIWDTAGQESFRSIT--RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST 85 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~--~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 85 (165)
.+.|+|.+|+++|-... -..-.-.|...+++-++.. -....++.+...+. ..+|+++|.||+|+-....+ +.
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPANiLqEtm 295 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPANILQETM 295 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcHHHHHHHH
Confidence 37899999999875432 2222345777777765432 12222333322222 36899999999998432211 11
Q ss_pred HHHHHHHHH--------------------------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132 86 EEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI 139 (165)
Q Consensus 86 ~~~~~~~~~--------------------------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~ 139 (165)
..+..+.+. .-+|+|.+|-.+|+|+.-+.. .+.....+..-.++++..+
T Consensus 296 Kll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm-----FLNlls~R~~~~E~~PAeF 370 (641)
T KOG0463|consen 296 KLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM-----FLNLLSLRRQLNENDPAEF 370 (641)
T ss_pred HHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH-----HHhhcCcccccccCCCcce
Confidence 111112211 225688899999999764433 3333333333444555555
Q ss_pred ee
Q 031132 140 KV 141 (165)
Q Consensus 140 ~~ 141 (165)
+.
T Consensus 371 QI 372 (641)
T KOG0463|consen 371 QI 372 (641)
T ss_pred ee
Confidence 44
No 371
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.062 Score=43.17 Aligned_cols=106 Identities=23% Similarity=0.197 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHH--HHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLED--ARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~--i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.-++.+.|++|+..|-.-.-.-...||.-++|+.+... ..|+.-.+.... +.+.. .-...|+++||+|-+.. .
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv-n 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV-N 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc-C
Confidence 34688999999988765433345678988999887542 223322121111 12221 33568889999996421 1
Q ss_pred CC-------HHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 031132 83 VS-------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 83 ~~-------~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~ 115 (165)
.+ .+....+....| ..++++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 122333333333 3489999999999988664
No 372
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=93.86 E-value=0.72 Score=36.75 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.+.++|.| .-+......++..+|-+++|++.+- .++...++.+..+.+......+..+++|+.+..
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence 4567889988 4456677889999999999999754 567888888888877765567788889999863
No 373
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.83 E-value=0.56 Score=30.38 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=40.6
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCeEEEEeeC
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNK 74 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 74 (165)
.+.+.|+++.... .....+..+|.++++++++ ..+...+..++..+...... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3578999876532 2345678899999999875 45566666666666554322 3456677775
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.70 E-value=0.72 Score=37.69 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+.|.||+|...... +.. .+ ....+-+++|+|++....-... ...+... -.+.-+|+||.|-....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCCCc
Confidence 46789999999854322 111 11 2256889999998764322222 2333222 23567889999964322
Q ss_pred CCCHHHHHHHHHHcCCeEEEe
Q 031132 82 AVSTEEGEQFAKEHGLIFMEA 102 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v 102 (165)
-.+..+....+.|+.++
T Consensus 256 ----G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFI 272 (429)
T ss_pred ----cHHhhhHHHHCCCeEEE
Confidence 11233344456665544
No 375
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=92.99 E-value=0.1 Score=39.93 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=61.5
Q ss_pred EEEEEeCCCc----------hhhhhhhHhhhcCCc---EEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 10 KLQIWDTAGQ----------ESFRSITRSYYRGAA---GALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 10 ~~~l~Dt~G~----------~~~~~~~~~~~~~ad---~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+.+.|.+|- ..+..+...|+.+.+ -+++++|++-+ ..-.....|+.+ .++|..+|.||
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK 257 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTK 257 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeeh
Confidence 4678899982 346677777766543 45666676653 222333334433 47999999999
Q ss_pred CCCCCCCC----CCHHHHHH----H---HHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132 75 CDLAHRRA----VSTEEGEQ----F---AKEHGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 75 ~Dl~~~~~----~~~~~~~~----~---~~~~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
+|...... -....++. + ...-..+++.+|+.++.|+++++..+.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 99742211 01111111 1 111235678899999999998876554
No 376
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.68 E-value=1.9 Score=31.90 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=42.4
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.++|+++.. .......+..+|.+++++.++. .++..+...+..+........++.++.|+.|.
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 58899999853 3455667789999999998853 44555543332232211134557789999985
No 377
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=92.62 E-value=0.92 Score=39.19 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=44.8
Q ss_pred EEEEEEeCCCchhhh-------hh---hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCeEEEEeeC
Q 031132 9 IKLQIWDTAGQESFR-------SI---TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~-------~~---~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK 74 (165)
..+.++||||..... .+ ...+++ .+|++|+|..++......+-..++..+...+.. -..+||+.|+
T Consensus 166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh 245 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH 245 (763)
T ss_pred ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence 458999999976421 11 122333 589999999876443332333566666666542 2468999999
Q ss_pred CCCCC
Q 031132 75 CDLAH 79 (165)
Q Consensus 75 ~Dl~~ 79 (165)
.|...
T Consensus 246 gD~lp 250 (763)
T TIGR00993 246 AASAP 250 (763)
T ss_pred CccCC
Confidence 99753
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.97 E-value=2.2 Score=34.97 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+.+.||+|...... +.. .+ .-..|.+++|+|+... .+...+...+.... + ..=+|.||.|-....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence 35688999999643221 111 11 2357889999998754 33434444444332 2 345668999953221
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 031132 82 AVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vS 103 (165)
-.+..+....++|+.+++
T Consensus 256 ----G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIG 273 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEe
Confidence 125556667788866654
No 379
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.68 E-value=1.4 Score=33.73 Aligned_cols=79 Identities=25% Similarity=0.309 Sum_probs=51.3
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 89 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 89 (165)
.+.+.|++---. -+ .-..+.++|.+|+|--+|- .++.+++..+..+... ++|..+|+||.++.. + ++.
T Consensus 165 ~~~IIDsaaG~g-Cp-Vi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~----s--~ie 232 (284)
T COG1149 165 DLLIIDSAAGTG-CP-VIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD----S--EIE 232 (284)
T ss_pred ceeEEecCCCCC-Ch-HHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc----h--HHH
Confidence 456677652211 00 1234679999999998874 3456666655554444 799999999996521 2 667
Q ss_pred HHHHHcCCeEE
Q 031132 90 QFAKEHGLIFM 100 (165)
Q Consensus 90 ~~~~~~~~~~~ 100 (165)
.++.+.+++++
T Consensus 233 ~~~~e~gi~il 243 (284)
T COG1149 233 EYCEEEGIPIL 243 (284)
T ss_pred HHHHHcCCCee
Confidence 77888887754
No 380
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.43 E-value=2.3 Score=34.87 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=47.6
Q ss_pred EEEEEeCCCchhhhhh-h---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 10 KLQIWDTAGQESFRSI-T---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~-~---~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
.+.+.||+|....... . ..+ +-.+|.+++|+|++... +.......+.... + ..-+|.||.|-....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~~-- 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAKG-- 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCcc--
Confidence 6789999998653221 1 111 33689999999987742 2222223332221 1 335678999963221
Q ss_pred CHHHHHHHHHHcCCeEEEec
Q 031132 84 STEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vS 103 (165)
-.+..+....+.|+.+++
T Consensus 249 --G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 249 --GGALSAVAETGAPIKFIG 266 (437)
T ss_pred --cHHHHHHHHHCcCEEEEe
Confidence 233445556677766654
No 381
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.03 E-value=2.9 Score=30.40 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=51.6
Q ss_pred EEEEEEEeCCCchhhhhhhHh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~-~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~ 84 (165)
.+-+.+.|++|.......... ..+.||.++++++++ ..++..+...+..+..... .+.+ ..++.|+.+.. ..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~ 190 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE 190 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence 467889999765432222111 124799999999874 4445445554444444322 1333 45899999852 23
Q ss_pred HHHHHHHHHHcCCeEEE
Q 031132 85 TEEGEQFAKEHGLIFME 101 (165)
Q Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (165)
......+...++.+++.
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 34455666666766443
No 382
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.01 E-value=0.86 Score=31.77 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCchhhhhhhHh--------hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.....+.||+|..+-...... ..-..|.+++++|+......... ...+..+. ..-=+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~---~~~~~~Qi--~~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ---QTEAQSQI--AFADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc---cHHHHHHH--HHCCEEEEecccC
Confidence 456788999998643333322 12357999999998653321111 11111111 1223557899996
No 383
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=90.89 E-value=2.3 Score=35.79 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 49 NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
..+...+..+.+ .++|++|++||.|...+ ...+.++.++.+.++++..+. +.=|+|-.++-..+++.+.
T Consensus 359 ~NL~RHIenvr~---FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 359 ANLERHIENIRK---FGVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHH---cCCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 334444444433 48999999999997432 234567788999999877555 4457788887777777665
No 384
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=90.63 E-value=3.4 Score=31.84 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=45.6
Q ss_pred eCCEEEEEEEEeCCCch------------------hhhhhhHhhh---------cCCcEEEEEEeCCChh-hHHHHHHHH
Q 031132 4 IDNKPIKLQIWDTAGQE------------------SFRSITRSYY---------RGAAGALLVYDITRRE-TFNHLASWL 55 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~------------------~~~~~~~~~~---------~~ad~vi~v~D~~~~~-s~~~~~~~~ 55 (165)
=++..+.+.++||+|.- .|........ ...|+++++++++... +-.++ ..+
T Consensus 58 e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~m 136 (281)
T PF00735_consen 58 ENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFM 136 (281)
T ss_dssp ETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHH
T ss_pred cCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHH
Confidence 36778889999999932 1111111111 1469999999987532 11122 223
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEe
Q 031132 56 EDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEA 102 (165)
Q Consensus 56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~v 102 (165)
+.+. ..+++|=|+.|+|.....++. ...+..-+...+++++..
T Consensus 137 k~Ls----~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 137 KRLS----KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHT----TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred HHhc----ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 3333 347788899999974322111 122333344567775543
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.54 E-value=4 Score=28.54 Aligned_cols=84 Identities=17% Similarity=0.062 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
...+.+.||+|...+.. ....+ ....+.+++|+|+.... +...+...+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~--~-~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL--G-ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence 34577899999742211 11112 12489999999986543 2223344443332 2 35667799996432
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 031132 82 AVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (165)
......++...++|+..
T Consensus 155 ---~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 ---GGAALSIRAVTGKPIKF 171 (173)
T ss_pred ---cchhhhhHHHHCcCeEe
Confidence 12223356666777543
No 386
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=90.35 E-value=4.6 Score=28.15 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=52.9
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC---
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--- 81 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--- 81 (165)
..+.+.+.|+++...-.. ...+ ..+|.++++..++ ..+...+..++..+.+.. -...-++.|+.+.....
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC
Confidence 356789999998642111 2222 5789999999875 456677777777766552 22345789998752111
Q ss_pred --CC-CHHHHHHHHHHcCCeEE
Q 031132 82 --AV-STEEGEQFAKEHGLIFM 100 (165)
Q Consensus 82 --~~-~~~~~~~~~~~~~~~~~ 100 (165)
.. .....+.+.+.++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 11 12244555666665543
No 387
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.34 E-value=3.9 Score=30.39 Aligned_cols=65 Identities=15% Similarity=-0.001 Sum_probs=43.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+.++|+++.... .....+..+|.+|+++.++ ..++..+...+..+.... ..++.++.|+.+-
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 356789999876432 2334567899999999875 445666666665555432 2367788899874
No 388
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=0.64 Score=35.29 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=35.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031132 29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAH 79 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~ 79 (165)
......++++|||.+....+..+..|+....-. ... .+.++||.|...
T Consensus 75 ~a~pl~a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvp 123 (418)
T KOG4273|consen 75 IAEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVP 123 (418)
T ss_pred cccceeeEEEEEeccchhhhHHHHhhccccccc---cchhheeccccccccc
Confidence 344568999999999999999999998754322 223 345799999753
No 389
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=1.2 Score=36.04 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=34.0
Q ss_pred CCEEEEEEEEeCCCchhhhh-hhHhh-----hcCCcEEEEEEeCCChhhHHHHHHHHH
Q 031132 5 DNKPIKLQIWDTAGQESFRS-ITRSY-----YRGAAGALLVYDITRRETFNHLASWLE 56 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~ad~vi~v~D~~~~~s~~~~~~~~~ 56 (165)
..+++.+.+.||+|+..... +.+.. .-+.|-+|||.|++-...-+.....++
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 34567899999999865432 22222 235799999999998665544444333
No 390
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=89.50 E-value=4.2 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~D 76 (165)
.+-+.++||+|.-.... ....+..||.+|+++.+ +..++..+...+..+.... +.+.++ -++.|+.+
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46789999977543222 22336789999999976 4444555555544443322 245554 47889976
No 391
>PRK10867 signal recognition particle protein; Provisional
Probab=89.41 E-value=5.6 Score=32.65 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~-~~---~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+.+.||+|...... +. ..+ .-..+.+++|+|+... .++......+.... + ..-+|.||.|-....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence 35688999999653211 11 111 1256788999998753 23333333343321 2 235667999953221
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 031132 82 AVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vS 103 (165)
-.+.......++|+.+++
T Consensus 257 ----G~alsi~~~~~~PI~fig 274 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIG 274 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEe
Confidence 124555666788866654
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.36 E-value=6.6 Score=33.24 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCchhhhhh-h---Hhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSI-T---RSY-YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~---~~~-~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.+.+.|+||+|....... . ..+ .......++|++.+.. ..++...+..+... .+.-+|+||.|-..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 456889999997432211 1 000 0112356777777642 34444444444322 46778999999632
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAF 114 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~ 114 (165)
..-.........++++.+++ +|+.+ +++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~ 528 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLH 528 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCchhhhh
Confidence 23345556667788876664 45665 3443
No 393
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=89.15 E-value=1.7 Score=30.75 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=47.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+-+.+.|+++..... ....+..+|.+|++++++. .+...+..++..+.........+.+|.|+.+..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 557899998765433 4556779999999999865 447777777766665531213567899999864
No 394
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.75 E-value=3.4 Score=26.13 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=30.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 56 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~ 56 (165)
+.+.++|+++.... .....+..+|.++++++.+ ..++..+..++.
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 35678999887532 2336677899999999875 445665655554
No 395
>CHL00175 minD septum-site determining protein; Validated
Probab=88.45 E-value=5.8 Score=30.14 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=42.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+.++||++.-. ......+..+|.+++|++++ ..++..+...+..+.... .....++.|+.+-
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG--IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC--CCceEEEEeccCh
Confidence 46689999997643 23334456799999998865 445555655555555432 2345677899874
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=87.61 E-value=2.6 Score=29.10 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=35.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+-+.|.||+|... ....++..||-++++..++-.+...-+ ...+.. .-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhh-----hcCEEEEeCCC
Confidence 45688999999652 223478899999999988732222211 112221 23466789987
No 397
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=87.22 E-value=6.7 Score=29.56 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~Dl 77 (165)
.+.+.+.||+|...... ....+..||.+|++..++. .++..+...+..+.... +.+.++ .+|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 46788999987643221 1223678999999998753 33444444333333221 234543 467899884
No 398
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.15 E-value=3.1 Score=30.99 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=44.3
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCeEEEEeeCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA---RQHANANMTIMLIGNKCD 76 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i---~~~~~~~~p~ivv~nK~D 76 (165)
+.+.+.|.|++|... ......+..+|.+|+.+.++.. ++..+...+..+ ....+.+.|..++.|..+
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~-d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL-DIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH-HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 356789999999764 4445667789999999887543 343333333332 222235678889999986
No 399
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=86.98 E-value=1.4 Score=33.81 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=23.9
Q ss_pred EEEEEeCCCchhh----hhh---hHhhhcCCcEEEEEEeCC
Q 031132 10 KLQIWDTAGQESF----RSI---TRSYYRGAAGALLVYDIT 43 (165)
Q Consensus 10 ~~~l~Dt~G~~~~----~~~---~~~~~~~ad~vi~v~D~~ 43 (165)
.++++|+||...- ..+ ....++.+|++++|+|+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 5899999996431 122 223467899999999874
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=5.6 Score=36.72 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=44.9
Q ss_pred EEEEeCCCch--------hhhhhhHhh---------hcCCcEEEEEEeCCChhh---------HHHHHHHHHHHHHhcCC
Q 031132 11 LQIWDTAGQE--------SFRSITRSY---------YRGAAGALLVYDITRRET---------FNHLASWLEDARQHANA 64 (165)
Q Consensus 11 ~~l~Dt~G~~--------~~~~~~~~~---------~~~ad~vi~v~D~~~~~s---------~~~~~~~~~~i~~~~~~ 64 (165)
-.++||+|.- .-...|..+ .+..+|||+.+|+++--+ ...++.-+.++......
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3578988851 234455544 345799999999865211 12234445556555556
Q ss_pred CCeEEEEeeCCCCCC
Q 031132 65 NMTIMLIGNKCDLAH 79 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~ 79 (165)
..|++|++||.|+..
T Consensus 256 ~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 256 RLPVYLVLTKADLLP 270 (1188)
T ss_pred CCceEEEEecccccc
Confidence 799999999999854
No 401
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=6.2 Score=32.88 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred EEEEEEEEeCCCchhh-----hhhhHh-hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 7 KPIKLQIWDTAGQESF-----RSITRS-YYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~-----~~~~~~-~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
..+-+.++||+|+..- .++... -....|.|+||-.+-- -++.+.+..+-..+..+..+..---++++|.|-.+
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 3456889999997532 222211 1457899999986533 34677777766666666433333456789999643
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEec------CCCCCCHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEAS------AKTAQNVEEAFIKT 117 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vS------a~~~~~i~~l~~~l 117 (165)
+. .-....+....+.|++++- .+..-|++.+...|
T Consensus 545 d~---vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 545 DK---VGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred hH---HHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 21 1112223334578877763 33444555554443
No 402
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=85.87 E-value=4 Score=32.01 Aligned_cols=91 Identities=9% Similarity=-0.029 Sum_probs=50.2
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
.+..++..|.+|=|=|+.-+-|-+.- .+.... ..+|-+||.||+||.+.. ....-++.+..+....++..+..
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn~-----~~~~~~-~~k~riiVlNK~DLad~~-~~k~~iq~~~~~~~~~~~~~~c~ 112 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSSRNE-----LFQDFL-PPKPRIIVLNKMDLADPK-EQKKIIQYLEWQNLESYIKLDCN 112 (335)
T ss_pred HHhhcccccEEEEeeccccCCccccH-----HHHHhc-CCCceEEEEecccccCch-hhhHHHHHHHhhcccchhhhhhh
Confidence 45567889999999999876443211 122222 357889999999995532 22333444444433334444333
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q 031132 106 --TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 106 --~~~~i~~l~~~l~~~i~~ 123 (165)
...++..++..+-....+
T Consensus 113 ~~~~~~v~~l~~il~~~~~~ 132 (335)
T KOG2485|consen 113 KDCNKQVSPLLKILTILSEE 132 (335)
T ss_pred hhhhhccccHHHHHHHHHHH
Confidence 333355555544444443
No 403
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=85.79 E-value=4.1 Score=29.35 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=41.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+-+.|.|++...... ......+.+|.+|+|.++.. .+...+...+..+... ....+-+|.||.+..
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQT--GSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC--CCCEEEEEEeCcccc
Confidence 4567899998632211 12335567899999999854 3345555555555433 223466789999864
No 404
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=85.79 E-value=3.2 Score=32.68 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=48.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~--------~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+-..+.+|.|.-.=.+....+.. .-|++|-|+|+.+-..... +.. .+..+. ..-=+|++||.|+..
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~---~~~~Qi--a~AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE---LAEDQL--AFADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH---HHHHHH--HhCcEEEEecccCCC
Confidence 44567888887543233222222 3588999999987433222 222 222221 223467889999965
Q ss_pred CCCCCHHHHHHHHHHc--CCeEEEecC
Q 031132 80 RRAVSTEEGEQFAKEH--GLIFMEASA 104 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~vSa 104 (165)
... .........++ ..++++++.
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 442 23333333333 466888776
No 405
>PRK10818 cell division inhibitor MinD; Provisional
Probab=85.39 E-value=6.9 Score=29.49 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=43.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----C--CCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----N--ANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~----~--~~~p~ivv~nK~Dl 77 (165)
.+.+.+.|+++.-... ....+..+|.++++++++. .++..+..++..+.... + .+....++.|..+.
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 4678999998765432 2334678999999999864 44555555555554221 1 12345678898875
No 406
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=84.96 E-value=4.2 Score=30.04 Aligned_cols=64 Identities=11% Similarity=-0.007 Sum_probs=40.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 77 (165)
.+.+.++|+++.... .....+..+|.+|++++++- .++..+......+. . .+.+ ..+++|+.+-
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~--~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-K--LGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-h--cCCceEEEEEECCCc
Confidence 467889999976542 23344568999999999864 34444433333222 2 2344 5688999985
No 407
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.87 E-value=7.9 Score=28.99 Aligned_cols=102 Identities=9% Similarity=0.125 Sum_probs=59.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
+.|.|.|+.|... .+....+..+|.||+=.-.+..+. -.....|+..+.+.....+|.-|+.|+..-. .......
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~-~~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA-RLTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc-hhhHHHH
Confidence 5688999988653 223445667999998877664322 2233345555544444678999999998732 1111111
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 031132 87 EGEQFAKEHGLIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~ 115 (165)
....+.. ++|++.+.-....-+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2222222 58888777665555555554
No 408
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.73 E-value=20 Score=29.31 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~----~~~~~~~~---~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+.|.||+|..... .....++. ...-+++|++++.. ...+...+..+... + +--++.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 468899999985332 22233333 33567888888654 23333333333211 1 2357789999532
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~ 125 (165)
..-.+..++...++|+.+++ +|+++ +++...=-+.+.++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a~~~~l~~~l 412 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIKVANPEELVRLL 412 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHH
Confidence 22245666777888866664 46665 455444333444433
No 409
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=83.62 E-value=3.1 Score=29.29 Aligned_cols=32 Identities=25% Similarity=0.075 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132 87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
+........+++++.+|+.++++++++...+.
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence 34455667788888888888888888776553
No 410
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=83.55 E-value=12 Score=28.16 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=39.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~Dl 77 (165)
.+-+.+.||+|.-..... ...+..||.+|+++.++ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 467889999775322221 12367899999988663 344544444444443322 234543 577899874
No 411
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.08 E-value=15 Score=26.57 Aligned_cols=92 Identities=23% Similarity=0.147 Sum_probs=51.1
Q ss_pred EEEEEEeCCCchhhhh----hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~----~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.|.||+|...... .+..+++ ..+-+++|++++.... .+..... +.... + +-=++.||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence 4578999999754321 1112211 5788999999987542 2222222 22221 2 2345689999522
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
..-....++...+.|+-.++ +|+++++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 23445666777889976664 3555533
No 412
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.68 E-value=9.8 Score=24.07 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=10.3
Q ss_pred hHhhhcCCcEEEEEEeCCCh
Q 031132 26 TRSYYRGAAGALLVYDITRR 45 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~ 45 (165)
++..++.+|+||++.|.-+-
T Consensus 42 l~~~i~~aD~VIv~t~~vsH 61 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSH 61 (97)
T ss_pred HHHhcCCCCEEEEEeCCcCh
Confidence 44445555555555555443
No 413
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=81.73 E-value=17 Score=29.11 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=53.8
Q ss_pred CCEEEEEEEEeCCCchh--------------hhhhhHhhhc--------------CCcEEEEEEeCCChhhHHHHHHHHH
Q 031132 5 DNKPIKLQIWDTAGQES--------------FRSITRSYYR--------------GAAGALLVYDITRRETFNHLASWLE 56 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~--------------~ad~vi~v~D~~~~~s~~~~~~~~~ 56 (165)
+|..+.+.+.||+|.-+ .......|+. +.++++|.+.++...--..-...+.
T Consensus 78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk 157 (373)
T COG5019 78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK 157 (373)
T ss_pred CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH
Confidence 56778889999999521 0111112211 4699999999775321111112334
Q ss_pred HHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCeEEEecCCCCCC
Q 031132 57 DARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQN 109 (165)
Q Consensus 57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~ 109 (165)
.+... +-+|=|+-|+|.....++ ....+.+.....++++|. ..+.+.
T Consensus 158 ~ls~~----vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~ 206 (373)
T COG5019 158 RLSKR----VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD--PYDPED 206 (373)
T ss_pred HHhcc----cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC--CCCccc
Confidence 44433 345556689997432221 223444556667888774 344444
No 414
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=81.57 E-value=12 Score=28.61 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=53.8
Q ss_pred eCCEEEEEEEEeCCCchhh---hhh-----------hHhhhc--------------CCcEEEEEEeCCChhhHHHHH-HH
Q 031132 4 IDNKPIKLQIWDTAGQESF---RSI-----------TRSYYR--------------GAAGALLVYDITRRETFNHLA-SW 54 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~---~~~-----------~~~~~~--------------~ad~vi~v~D~~~~~s~~~~~-~~ 54 (165)
=+|.+..+.+.||+|.-++ ... .++|++ ..+++++.+.++-. ++..+. ..
T Consensus 99 E~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDief 177 (336)
T KOG1547|consen 99 EKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEF 177 (336)
T ss_pred ecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHH
Confidence 3567778899999995221 111 122222 36888888887642 222221 12
Q ss_pred HHHHHHhcCCCCeEEEEeeCCCCC--CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 031132 55 LEDARQHANANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 55 ~~~i~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~ 115 (165)
++.+... +-++=|+-|.|-. +++..-...++.-...+++.+|+--+.+.+.=+..++
T Consensus 178 lkrLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 178 LKRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 2333322 3455566789842 1221222334444556677777665554433333333
No 415
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=81.23 E-value=11 Score=31.06 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=41.6
Q ss_pred CcEEEEEEeCCC----hhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 33 AAGALLVYDITR----RETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 33 ad~vi~v~D~~~----~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
.-|+++.-|.+- ++++.++.. .+..+.. .++|+++++|-.+= ....+......+..+++.+++.+++.
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehH
Confidence 356777777653 233433333 3333333 47999999998873 22234555666777888888887655
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.86 E-value=12 Score=29.55 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=51.0
Q ss_pred EEEEEEEEeCCCchh--------hhhhhHhhhcCCcE-----EEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031132 7 KPIKLQIWDTAGQES--------FRSITRSYYRGAAG-----ALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIG 72 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~-----vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~ 72 (165)
+++-+.+.||+|+-. ...+ ...++..+. +++++|++-.. ++..++ .++. .. + ---++.
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI-~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~e---av--~-l~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKI-VRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNE---AV--G-LDGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHH-HHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHH---hc--C-CceEEE
Confidence 345678999999742 1111 122333333 88888998764 344332 2222 21 1 234678
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 031132 73 NKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113 (165)
Q Consensus 73 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l 113 (165)
||.|-....-+- ...+..+++|+.++-. |++++++
T Consensus 292 TKlDgtAKGG~i----l~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 292 TKLDGTAKGGII----LSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EecccCCCccee----eeHHHHhCCCEEEEeC--CCChhhc
Confidence 999965433222 2345567899877743 4555544
No 417
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=79.50 E-value=20 Score=26.78 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCchhhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEE-EEeeC
Q 031132 8 PIKLQIWDTAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM-LIGNK 74 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~i-vv~nK 74 (165)
.+-+.++||+|......+. ...+..||.+|+++.++. .++..+...+..+..... .+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCch-HHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 4678899998754322221 222336999999998754 455555555554444332 244554 44565
No 418
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.95 E-value=1.8 Score=33.11 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHH-------HHHcCCeEEEecCCC
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQF-------AKEHGLIFMEASAKT 106 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~~~~~~vSa~~ 106 (165)
++|++||+.|.|.-. ....+.++.. +..+|...+..|++.
T Consensus 190 P~PV~IVgsKYDvFq--~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM 236 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVFQ--DFESEKRKHICKTLRFVAHYYGAALLMFSSKM 236 (363)
T ss_pred CCceEEeccchhhhc--cccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 389999999999632 2334444433 333455555566653
No 419
>PRK11670 antiporter inner membrane protein; Provisional
Probab=78.12 E-value=34 Score=27.47 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=38.5
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLA 78 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~ 78 (165)
+.+-+.++|+|..-.-..+....+-.+|.+|+|..+... ++.+....+..+. ..+.|+ -+|.|+.+..
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~---~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFE---KVEVPVLGIVENMSMHI 282 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHh---ccCCCeEEEEEcCCccc
Confidence 356788999975432112222233368999999877543 3333433333332 235665 4788998753
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.79 E-value=23 Score=27.16 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=51.2
Q ss_pred EEEEEEEeCCCchhhh-hh---hHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFR-SI---TRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~-~~---~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+.+.||+|..... .. +..++ ...+-+++|+|++.. ..++..++..+... .+-=++.||.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~~- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCCC-
Confidence 3568899999986321 11 12222 245678999998743 23333334443321 234567899995321
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVE 111 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 111 (165)
.-.+..++...+.|+.+++ +|+++.
T Consensus 227 ---~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 ---SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2234455666788866664 344444
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.23 E-value=41 Score=29.91 Aligned_cols=108 Identities=20% Similarity=0.132 Sum_probs=58.8
Q ss_pred EEEEEEeCCCchhhh----hhhHhh--hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR----SITRSY--YRGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~----~~~~~~--~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+.|+||+|..... ...... ....+-+++|+|++.. ..+.++ +..+.... .-.+-=+|+||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~-~~~i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGA-GEDVDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcc-cCCCCEEEEeccCCCC--
Confidence 358899999953221 111111 2245678899998753 333333 33332221 0023456789999532
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHHh
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKIQ 126 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~~ 126 (165)
.-=.+..+....++|+.+++ +|++| +++...--+.+.+...
T Consensus 338 --~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll 379 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAF 379 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHh
Confidence 12234455666788876664 47777 6665544444444444
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=76.16 E-value=14 Score=30.34 Aligned_cols=64 Identities=20% Similarity=0.111 Sum_probs=36.6
Q ss_pred EEEEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQESFRS-ITRS-----YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~-~~~~-----~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+-+.++||+|+..... +... -.-+.|=+++|+|+.-...-.... ..+.... + -.=||+||.|-.
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A---~aF~e~l--~-itGvIlTKlDGd 252 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA---KAFNEAL--G-ITGVILTKLDGD 252 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH---HHHhhhc--C-CceEEEEcccCC
Confidence 4578999999865433 2111 133679999999998754322222 2232221 1 123566888853
No 423
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.91 E-value=32 Score=28.03 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=49.8
Q ss_pred EEEEEEeCCCchhhhh----hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~----~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.|.||+|...... ....+.. ..+.+++|+++... ..++...+..+.. -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 5688999999843221 1222222 34677778776432 3334333333221 123466789999532
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVE 111 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 111 (165)
..-.+..++...+.|+.+++ +|+++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 22344556677788866665 355554
No 424
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=73.71 E-value=19 Score=27.73 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=40.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCe-EEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMT-IMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p-~ivv~nK~Dl 77 (165)
.+.+.+.||+|.-....+. ..+..||.+|++++++ ..++..+...+..+.... +.+.+ .-++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 4678899997763222222 2356799999998874 445555555544443322 23333 3478899873
No 425
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=73.53 E-value=19 Score=26.25 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=42.0
Q ss_pred EEEEEEeCCCchh-hhhhhHhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQES-FRSITRSYYRG--AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-~~~~~~~~~~~--ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+.+.++|++.... ...+....+.. +|.+++|..++ ..+..++...+..+.... -...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~--~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG--IPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC--CCCCEEEEeCCcCc
Confidence 6789999985432 23333444444 48899999876 445666666666666542 12346778998753
No 426
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.09 E-value=43 Score=27.58 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=49.8
Q ss_pred EEEEEEeCCCchhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~----~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.|.||+|...... .+..++ ...+.+++|+|++-. ..++..++..+... ..-=+|+||.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 5688999999853211 112222 235778899998643 23333344444321 234567899995321
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNV 110 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i 110 (165)
.-.+..++...++|+.+++ +|+++
T Consensus 393 --~G~iLni~~~~~lPIsyit--~GQ~V 416 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT--DGQDV 416 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCC
Confidence 2234455666788866654 34444
No 427
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.19 E-value=50 Score=26.65 Aligned_cols=97 Identities=20% Similarity=0.065 Sum_probs=50.7
Q ss_pred EEEEEEeCCCchhhhhh----hHhh--hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCC--CCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRE-TFNHLASWLEDARQHANA--NMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~----~~~~--~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 79 (165)
..+.++||+|....... ...+ .....-.++|++++... ...++..-+......... ..+-=+|+||.|=..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 46789999997643221 1211 12345668999988743 334333323322211100 013456789999422
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 111 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 111 (165)
..-.+..++...++|+.+++ +|+++-
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 22344556667788866664 344443
No 428
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=71.95 E-value=25 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
....+|.++.+|++.++..-+.+...+..++++.....|+.++-|-.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 35578999999999887766666666777777776788998886655
No 429
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=71.37 E-value=53 Score=26.83 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=50.6
Q ss_pred EEEEEEEeCCCchhhhhh----hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~----~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+.|.||.|...+... ...++. ...-+.+|++++.. .+++...+..+... ..-=+++||.|=.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET--- 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDET--- 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEccccc---
Confidence 346889999998654332 333333 23556677777765 44555555554333 1224568999932
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNV 110 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 110 (165)
-+.-....+..+.+.|+..++ +|++|
T Consensus 352 -~s~G~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 352 -TSLGNLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred -CchhHHHHHHHHhCCCeEEEe--CCCCC
Confidence 123334455666677755443 35544
No 430
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=71.35 E-value=40 Score=26.47 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=45.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~--------~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
....+.+|.|...-.++...++. .-+++|.|+|+.+...... . ...+..+. ..-=+|++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~--~-~~~~~~Qi--~~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--Q-FTIAQSQV--GYADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc--c-cHHHHHHH--HhCCEEEEeccccCCH
Confidence 44567888998765555444322 2489999999976322111 1 11111111 1234667899998642
Q ss_pred CCCCHHHHHHHHHHc--CCeEEEec
Q 031132 81 RAVSTEEGEQFAKEH--GLIFMEAS 103 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~vS 103 (165)
.+.+....... ..+++.++
T Consensus 166 ----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 ----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred ----HHHHHHHHHHhCCCCEEEEec
Confidence 13333333333 35566543
No 431
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=71.24 E-value=46 Score=25.76 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=59.6
Q ss_pred EEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHH---HHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANM-TIMLIGNKCDLAHRRA 82 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~---~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~~~ 82 (165)
.+.+.++|++|... ...........||.+|++..++ ..++.. +...+..+... +.+. +..+|.|+.+..
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~---- 195 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGS---- 195 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCc----
Confidence 57789999876431 0111122234689998888764 334433 34444444332 1223 466889998742
Q ss_pred CCHHHHHHHHHHcCCeEEEec----------------CCC-CCCHHHHHHHHHHHHHHHHh
Q 031132 83 VSTEEGEQFAKEHGLIFMEAS----------------AKT-AQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vS----------------a~~-~~~i~~l~~~l~~~i~~~~~ 126 (165)
.....++++++++++-.- ... .....+.|..|.+.+.....
T Consensus 196 ---~~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 196 ---GEAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred ---cHHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 133455666666543321 011 11267888888888877544
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.80 E-value=58 Score=26.41 Aligned_cols=106 Identities=17% Similarity=0.061 Sum_probs=59.1
Q ss_pred EEEEEEEeCCCchhhhh----hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS----ITRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~----~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
.+.+.+.||+|...... ....++.. ..-+++|+|++.. ...+...+..+... .+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 35688999999754221 11222332 2358899999875 33333333333211 24456789999532
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~ 125 (165)
..-.+..++...++|+..++ +|+++ +++...=-..+.+..
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l 367 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKI 367 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHh
Confidence 22234455666788866663 47777 555544444444444
No 433
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=68.51 E-value=40 Score=23.96 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=58.3
Q ss_pred hcCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Q 031132 30 YRGAAGALLVYDITRR-------ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA 102 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~-------~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 102 (165)
++...+=.+++|.++- .-..++..|+..+.+.. ...-++||-|-.-... .....++..+.+.++++++.-
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF-GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC-CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 5666666677776652 12357888888888774 2225888888764322 345677888888999998888
Q ss_pred cCCCCCCHHHHHHHH
Q 031132 103 SAKTAQNVEEAFIKT 117 (165)
Q Consensus 103 Sa~~~~~i~~l~~~l 117 (165)
+++...+.++++..+
T Consensus 113 ~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 113 RAKKPGCFREILKYF 127 (168)
T ss_pred CCCCCccHHHHHHHH
Confidence 888776777666554
No 434
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=67.77 E-value=57 Score=25.83 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=56.4
Q ss_pred EEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHH---HHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANM-TIMLIGNKCDLAHRRA 82 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~---~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~~~ 82 (165)
.+-+.++|+.|...-... ......-+|.+|+|.. .+..++.. +...+..+.+.. .+. -+-+|.||.|...
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~~~ad~VIVVt~-pe~~si~~A~~v~kai~~~~~lg-~~~~i~GlViNr~d~~~--- 221 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIARDMAQKVIVVGS-NDLQSLYVANNVCNAVEYFRKLG-GNVGVAGMVINKDDGTG--- 221 (329)
T ss_pred cCCEEEEecCCcceeccccchhhhcCCceEEEeCC-chHHHHHHHHHHHHHHHHHHHhC-CCCCceEEEEeCcCCcc---
Confidence 456888998775431111 1111123566655554 34445543 344444444331 122 3678899998521
Q ss_pred CCHHHHHHHHHHcCCeEEEe---------c-------CCCCCCHHHHHHHHHHHHHHHHh
Q 031132 83 VSTEEGEQFAKEHGLIFMEA---------S-------AKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v---------S-------a~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.+..++..++++++-. + ...+..+.+.|..|.+.+.+...
T Consensus 222 ----~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 222 ----EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred ----hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 2445555566653321 0 11123467788888888877443
No 435
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=67.46 E-value=32 Score=22.49 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=31.2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
...-..+++-.+|+|.+ ....+.....+..+.... .++|++++.++.
T Consensus 31 ~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~~ 77 (115)
T PF03709_consen 31 AIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERN-FGIPVFLLAERD 77 (115)
T ss_dssp HHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS-TT-EEEEEESCC
T ss_pred HHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 33334677777777765 555556666777776665 689999998866
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.26 E-value=75 Score=26.67 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred EEEEEeCCCchhhhh-h--hHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132 10 KLQIWDTAGQESFRS-I--TRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 83 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~-~--~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 83 (165)
.+.+.||+|...... + ....+.. ..-.++|+|++... ..+...+..+.. ....-+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence 578999999543221 1 1111221 23378888987542 233332222221 224456789999532
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHHh
Q 031132 84 STEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKIQ 126 (165)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~~ 126 (165)
..-.+..+....++++.+++ +|+++ +++...=.+.+.++..
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll 447 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAF 447 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHh
Confidence 23345556677788876664 47777 6655444444444333
No 437
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=53 Score=26.45 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCEEEEEEEEeCCCchh-------h-------hhhhHhh-----------hc--CCcEEEEEEeCCChhhHHHHH-HHHH
Q 031132 5 DNKPIKLQIWDTAGQES-------F-------RSITRSY-----------YR--GAAGALLVYDITRRETFNHLA-SWLE 56 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~-------~-------~~~~~~~-----------~~--~ad~vi~v~D~~~~~s~~~~~-~~~~ 56 (165)
+|..+++.+.||||.-+ | .+....| +. ..+++++.+.++-.. +..+. ..+.
T Consensus 75 ~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk 153 (366)
T KOG2655|consen 75 NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMK 153 (366)
T ss_pred CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHH
Confidence 57788899999999521 1 1112222 22 579999999977532 11111 1222
Q ss_pred HHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCeEEEecC
Q 031132 57 DARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa 104 (165)
.+. ..+.+|=|+-|+|......+ -...+..-+...+++++....
T Consensus 154 ~l~----~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~ 199 (366)
T KOG2655|consen 154 KLS----KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPT 199 (366)
T ss_pred HHh----ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCC
Confidence 232 34556667789996433221 122333445556777655443
No 438
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=66.08 E-value=30 Score=26.91 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=40.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.+.+.++|+++... ......+..+|.+++|++.+ ..++..+..++..+.... ..+.++.|..
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~---~~~~lVv~~~ 265 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRN---PDLRLVVRGP 265 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhC---CCeEEEEeCC
Confidence 46688999997753 33566788999999999864 455666666666655432 2344455653
No 439
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=65.71 E-value=52 Score=28.11 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=42.2
Q ss_pred HHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 57 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
.+......++|++|.+|+..-.. +...+.++.++.+.++.+..+. +.=|+|-.++-+.+++.+-
T Consensus 393 Hi~n~~~fg~pvVVaiN~F~~Dt--~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 393 HIGTVKKSGINPVVCINAFYTDT--HAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHcCCCeEEEeCCCCCCC--HHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 33333336899999999987422 2233456677888888766544 4457788888777776554
No 440
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=65.37 E-value=7.7 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=33.8
Q ss_pred EEEEEeCCCchhhhhh--h-Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 10 KLQIWDTAGQESFRSI--T-RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~--~-~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...|.++.|...-..+ . +.+ .-..+.+|.|+|+........+...+..... .-=+|++||+|+..
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-----~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-----FADVIVLNKIDLVS 155 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-----T-SEEEEE-GGGHH
T ss_pred CEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-----hcCEEEEeccccCC
Confidence 3456677775443332 0 111 2256999999999775333333332222221 22366789999854
No 441
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=64.68 E-value=18 Score=27.96 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=46.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 031132 32 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNV 110 (165)
Q Consensus 32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i 110 (165)
....+.+=+|++... + +..+.... ..+|.+.+.||.|-.. .++.. ..+.++ .+.+||-++.|+
T Consensus 206 hsAdi~Lr~DaT~Dd----L---IdvVegnr-~yVp~iyvLNkIdsIS-----iEELd---ii~~iphavpISA~~~wn~ 269 (358)
T KOG1487|consen 206 HSADIALRFDATADD----L---IDVVEGNR-IYVPCIYVLNKIDSIS-----IEELD---IIYTIPHAVPISAHTGWNF 269 (358)
T ss_pred cchheeeecCcchhh----h---hhhhccCc-eeeeeeeeecccceee-----eeccc---eeeeccceeecccccccch
Confidence 344456677776432 1 22222111 3589999999999532 11111 112344 889999999999
Q ss_pred HHHHHHHHHHHH
Q 031132 111 EEAFIKTAATIY 122 (165)
Q Consensus 111 ~~l~~~l~~~i~ 122 (165)
+++++.+-+.+.
T Consensus 270 d~lL~~mweyL~ 281 (358)
T KOG1487|consen 270 DKLLEKMWEYLK 281 (358)
T ss_pred HHHHHHHhhcch
Confidence 999988877554
No 442
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=64.43 E-value=53 Score=27.70 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 56 EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
..+......+.|++|.+|+..-. .+...+.++.++.+.++++..+. +.=|+|-.++-+.+++.+-
T Consensus 347 ~Hi~n~~~fg~p~VVaiN~F~~D--t~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 347 KHIENIKKFGVPVVVAINKFSTD--TDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 33333333589999999999742 22234456778888898876664 4457788888877776553
No 443
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=63.88 E-value=58 Score=27.21 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCcEEEEEEeCCCh-------------hhHHHHH----HHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 031132 32 GAAGALLVYDITRR-------------ETFNHLA----SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 94 (165)
Q Consensus 32 ~ad~vi~v~D~~~~-------------~s~~~~~----~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 94 (165)
..|++++|-.+..- +..+.++ ++...+......++|++|.+||.-.. .+.....+..++.+
T Consensus 319 ~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tD--t~~Ei~~i~~~~~~ 396 (554)
T COG2759 319 KPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTD--TEAEIAAIEKLCEE 396 (554)
T ss_pred CCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCC--CHHHHHHHHHHHHH
Confidence 56888888865320 1112222 23333333333589999999998632 22233456677888
Q ss_pred cCCeEEEec--CCCCCCHHHHHHHHHHHHHH
Q 031132 95 HGLIFMEAS--AKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 95 ~~~~~~~vS--a~~~~~i~~l~~~l~~~i~~ 123 (165)
+++++..+. ++-|+|-.++-+.++..+..
T Consensus 397 ~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 397 HGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred cCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 887765443 66788888888887777664
No 444
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=63.86 E-value=27 Score=26.13 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=36.6
Q ss_pred EEEEEeCCCchhh-------hhhhHhhh--cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 10 KLQIWDTAGQESF-------RSITRSYY--RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 10 ~~~l~Dt~G~~~~-------~~~~~~~~--~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.+.++|.|||-+. ..+.++.- .---+++|++|..= -++...+.-.+..+..-....+|-|-|.+|.||..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4678999999642 22222211 12345667776421 11222222223333222224789999999999854
No 445
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=63.01 E-value=10 Score=24.90 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=16.9
Q ss_pred EeeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEecCC
Q 031132 71 IGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAK 105 (165)
Q Consensus 71 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~ 105 (165)
++||+|++. ..+.+..+...+ +..++.+||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999743 445555555554 4678888874
No 446
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=61.92 E-value=25 Score=22.76 Aligned_cols=43 Identities=12% Similarity=-0.037 Sum_probs=27.6
Q ss_pred hhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 28 SYYRGAAGALLVYDI--TRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~--~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
..++.||++|..+|. -+..+.-++..... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a-------lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYA-------LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHH-------TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHH-------CCCEEEEEEcCCcc
Confidence 347789999999998 34444333422211 47899998877664
No 447
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.15 E-value=92 Score=25.61 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=58.8
Q ss_pred EEEEEEeCCCchhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR----SITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~----~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
..+.+.||+|..... .....+. ....-.++|+|++.. .+.+..++..+... .+-=+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence 357899999975421 2222222 234567899998853 22333333333211 23456789999532
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHHhc
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKIQD 127 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~~~ 127 (165)
..-.+..++...++|+..++ +|+++ +++...-.+.+.++...
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 22234555667788866664 46776 55555444455554443
No 448
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=61.02 E-value=82 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhh-------cCCcEEEEEEeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYY-------RGAAGALLVYDITR 44 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~-------~~ad~vi~v~D~~~ 44 (165)
....+.++.|...-.++...+. -.-|++|.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 4567888999866555444431 14589999999975
No 449
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=59.74 E-value=73 Score=24.01 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=40.6
Q ss_pred EEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D 76 (165)
.+-+.+.|++|......+ ....+..||.+++++.+ +..++..+...++.+......+.++ .++.|+.+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASG-ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCc-hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 356789999765421211 11223478999999986 4556666666666665543344555 37778765
No 450
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=59.18 E-value=43 Score=25.23 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=29.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~ 60 (165)
.+-+.++|+|-.... .-...+...+|++|+|+.... .+...+...+..+..
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~-t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNE-TRLHELTSLKEHLSG 262 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh
Confidence 355778888754321 223344567788888887543 344555555555543
No 451
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=59.15 E-value=18 Score=25.37 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=32.7
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
+...+..||++||+....+..--..++.++..+......++|++++.+-
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 3445778999999998776544455666666543222257899888774
No 452
>PRK13695 putative NTPase; Provisional
Probab=58.70 E-value=59 Score=22.60 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=43.1
Q ss_pred hHhhhcCCcEEEEEEe---CCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Q 031132 26 TRSYYRGAAGALLVYD---ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA 102 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D---~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 102 (165)
....+.+++. +++| ..+..+ .. +...+......+.|++++.+|... ......+....+..++++
T Consensus 90 ~~~~l~~~~~--lllDE~~~~e~~~-~~---~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 90 LERALEEADV--IIIDEIGKMELKS-PK---FVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHhccCCCCE--EEEECCCcchhhh-HH---HHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE
Confidence 3344566777 5778 332211 11 222333222356899999888543 112233334445667766
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 031132 103 SAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 103 Sa~~~~~i~~l~~~l~~~i 121 (165)
+.+|-+++.+.+++.+
T Consensus 157 ---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 ---TPENRDSLPFEILNRL 172 (174)
T ss_pred ---cchhhhhHHHHHHHHH
Confidence 5567777777777654
No 453
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=57.25 E-value=62 Score=22.41 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=52.7
Q ss_pred EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHH
Q 031132 12 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 91 (165)
Q Consensus 12 ~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 91 (165)
.+-+++. ..|..-++.-..++|+.++++.......-. ..+....+ .++|++++ |+... .....+..+
T Consensus 44 ~L~E~~~-~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt~---lT~~~a~~---~~KP~l~i----~~~~~--~~~~~v~~w 110 (145)
T PF12694_consen 44 PLQETPS-SGYRQRTEWNVRDSDGTLIFTRGELTGGTA---LTVEFARK---HGKPCLHI----DLSIP--EAAAAVAEW 110 (145)
T ss_dssp --EE-SS---HHHHHHHHHHTSSEEEEEESSS--HHHH---HHHHHHHH---TT--EEEE----TS-HH--HHHHHHHHH
T ss_pred cceecCC-CCHHHHHHhhhhhcCeEEEEecCCCCcHHH---HHHHHHHH---hCCCEEEE----ecCcc--cHHHHHHHH
Confidence 3444444 345666666788999999999654432221 11222222 46898887 44221 235667778
Q ss_pred HHHcCCeEEEec---CCCCCCHHHHHHHHHHHHH
Q 031132 92 AKEHGLIFMEAS---AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 92 ~~~~~~~~~~vS---a~~~~~i~~l~~~l~~~i~ 122 (165)
...+++.++-|- +...-+|...-..++..++
T Consensus 111 l~~~~i~vLNVAGPReS~~PgI~~~~~~~L~~~l 144 (145)
T PF12694_consen 111 LREHNIRVLNVAGPRESKAPGIYRQVRAFLEALL 144 (145)
T ss_dssp HHHTT--EEEEE---TTT-TTHHHHHHHHHHHHH
T ss_pred HHHCCceEEEeccCcccCCCCHHHHHHHHHHHHh
Confidence 888888887762 3445577777777776655
No 454
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=57.22 E-value=81 Score=23.74 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEE-EEeeC
Q 031132 8 PIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM-LIGNK 74 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~i-vv~nK 74 (165)
.+-+.++||+|..-...+ .......||.+|+++.++. .++..+..++..+..... .+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchH-HHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 467889999775432222 1112346899999998753 445555555444333221 344443 45554
No 455
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=57.02 E-value=32 Score=26.71 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=69.1
Q ss_pred eeCCEEEEEEEEeCC-CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE-EeeCCCCCCC
Q 031132 3 TIDNKPIKLQIWDTA-GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML-IGNKCDLAHR 80 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv-v~nK~Dl~~~ 80 (165)
.++++..-+.+.||| |-.+..--.-.+++.+|+.|+|-.+ +.-++.+.+..+....+. ++|++= |-|-+--.-+
T Consensus 151 ~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTP-Q~vAl~Dv~K~i~fc~K~---~I~ilGvVENMs~f~Cp 226 (300)
T KOG3022|consen 151 DVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTP-QEVALQDVRKEIDFCRKA---GIPILGVVENMSGFVCP 226 (300)
T ss_pred cCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCc-hhhhhHHHHhhhhhhhhc---CCceEEEEeccccccCC
Confidence 356777788999997 5444333444566666887777765 445566676666655544 677754 4454432211
Q ss_pred ------CCCCHHHHHHHHHHcCCeEEEe---------cCCCCC---------CHHHHHHHHHHHHHHHHhc
Q 031132 81 ------RAVSTEEGEQFAKEHGLIFMEA---------SAKTAQ---------NVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ------~~~~~~~~~~~~~~~~~~~~~v---------Sa~~~~---------~i~~l~~~l~~~i~~~~~~ 127 (165)
......-+..+++.++++++-. +...|. -..+.|..|...+.++...
T Consensus 227 ~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~~ 297 (300)
T KOG3022|consen 227 KCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLSS 297 (300)
T ss_pred CCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHHHHHHhhcc
Confidence 1122234566777777775432 111222 2446777777777765443
No 456
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.73 E-value=43 Score=29.50 Aligned_cols=66 Identities=17% Similarity=0.015 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+-+.++|+|........ ......+|++|+|+.. +..+...+...+..+... .....-+|.|+.|.
T Consensus 655 ~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL--NGEVTGVFLNMLDP 720 (754)
T ss_pred hCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc--CCceEEEEecCCCh
Confidence 456889999987643332 3345578999999875 444455666666666543 12334588999985
No 457
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=55.55 E-value=1e+02 Score=26.43 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=41.7
Q ss_pred HHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 57 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
.+......++|++|.+|+..-.. +...+.++.++.+ .++++..+. +.=|+|-.++-+.+++.+-
T Consensus 385 Hi~n~~~fg~pvVVaiN~F~~Dt--~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 385 HINNVAQYGLPVVVAINRFPTDT--DEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHcCCCeEEEecCCCCCC--HHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 33333336899999999987422 2233456667777 577766555 4557788888887776654
No 458
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=53.88 E-value=66 Score=21.66 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=42.5
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH---HhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDAR---QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~---~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
+...+..||++||........--..++..+..+. .....++|+.++.+--.... ..............+++.++
T Consensus 64 ~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g-~~~~~~~l~~~~~~~~~~~~ 140 (152)
T PF03358_consen 64 LYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRG-GLRALEQLRQILDYLGMIVV 140 (152)
T ss_dssp HHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSST-THHHHHHHHHHHHHTTBEEE
T ss_pred HHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcH-HHHHHHHHHHHHHHCCCEEc
Confidence 3455789999999998776544445555555554 22226788888866544222 12233444445555665543
No 459
>PRK10037 cell division protein; Provisional
Probab=53.50 E-value=71 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 44 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~ 44 (165)
+.+-+.+.||++... ......+..||.+|+++.++.
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~ 151 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA 151 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH
Confidence 356789999998853 345667789999999998853
No 460
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=53.50 E-value=21 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.7
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 97 LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 97 ~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+|++..||+++.|+..+++.+.+.+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 4689999999999999999887653
No 461
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.17 E-value=1.3e+02 Score=24.89 Aligned_cols=86 Identities=22% Similarity=0.122 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCchhh----hhhhHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESF----RSITRSYYR-----GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~----~~~~~~~~~-----~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.+.++||+|.... -..+..+++ ...-+++|+|++... +.+...+..+... .+-=+|.||.|=.
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCC
Confidence 456789999997421 112222222 234688999988753 2333333333111 2345678999953
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEec
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vS 103 (165)
. ..-.+..++...+.|+..++
T Consensus 373 ~----~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 373 D----FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred C----CccHHHHHHHHHCCCEEEEe
Confidence 2 12234555667788866664
No 462
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=52.62 E-value=21 Score=28.70 Aligned_cols=35 Identities=14% Similarity=-0.099 Sum_probs=25.9
Q ss_pred EEEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCC
Q 031132 9 IKLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDIT 43 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~ 43 (165)
..+++.|++|...- .......++++|+++.|+++.
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 35789999997542 223445688999999999985
No 463
>PLN02759 Formate--tetrahydrofolate ligase
Probab=52.20 E-value=72 Score=27.55 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=42.4
Q ss_pred HHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 57 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
.+......++|++|.+|+..-. .....+.++.++.+.+ +.+..+. +.=|+|-.++-+.+++.+-
T Consensus 442 Hi~n~~~fg~pvVVaiN~F~~D--t~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 442 HIENTKSYGVNVVVAINMFATD--TEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 3333333589999999999742 2223455677788888 4766555 4457788888777776553
No 464
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=50.57 E-value=75 Score=21.37 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=39.0
Q ss_pred eEEEEeeCCCCC---CCCCC---CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 67 TIMLIGNKCDLA---HRRAV---STEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 67 p~ivv~nK~Dl~---~~~~~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
=++|++.|.+-- ..... ..+.+.+++.+++ +.++++||..++.+.+.++...++|.+.-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 477788888731 11101 1122334455555 45899999999999999999999887643
No 465
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.57 E-value=75 Score=27.55 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=45.2
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAH 79 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~ 79 (165)
-+.|+.-++.|.+++ ....++.. ..+-||.|++++|.+-.-..+ ...+++.+..+ +.| ++-|+|+.||..
T Consensus 107 vvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLlIdgnfGfEME-TmEFLnil~~H---GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 107 VVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLLIDGNFGFEME-TMEFLNILISH---GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred EeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEEeccccCceeh-HHHHHHHHhhc---CCCceEEEEeeccccc
Confidence 356778889999988 33444433 467899999999987553222 22333433333 555 555899999853
No 466
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=49.46 E-value=45 Score=24.61 Aligned_cols=45 Identities=18% Similarity=0.005 Sum_probs=25.8
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeC
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNK 74 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK 74 (165)
...+..+|++|+.=|.++....+.....+..+... ..|+ +|.+|+
T Consensus 36 ~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l---~~~v~~V~GNH 81 (232)
T cd07393 36 DNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL---PGTKVLLKGNH 81 (232)
T ss_pred HhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC---CCCeEEEeCCc
Confidence 33445899999999998754444443434433332 2344 444554
No 467
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=49.29 E-value=1.2e+02 Score=23.36 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=63.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC--------CCCCCCHHHHHHHHHHcCCeEEE
Q 031132 32 GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA--------HRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
.++++|++++.+..++.++...-+-.-++.-. .+-=+++++.+.|.. .+..+++..........=.|.+
T Consensus 63 ~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~f- 141 (271)
T COG1512 63 GAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAF- 141 (271)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChHHHHHHHHhhhCccc-
Confidence 68999999999998887776665444443322 344588888999942 2456777777766655544443
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132 102 ASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 132 (165)
Q Consensus 102 vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~ 132 (165)
...|....++..++.+.+....+..+.
T Consensus 142 ----r~gny~~gi~~~id~l~~~l~g~~~~~ 168 (271)
T COG1512 142 ----RDGNYAGGLEAGIDRLVALLAGEPLPS 168 (271)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHcCCCCCC
Confidence 455677777777777777666654333
No 468
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=48.38 E-value=57 Score=19.36 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=23.9
Q ss_pred EEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCCh
Q 031132 11 LQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRR 45 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~ 45 (165)
+.++|+++....... .......+|.++++++.+..
T Consensus 36 ~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 36 YVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 568898877543321 24456688999999987653
No 469
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=47.99 E-value=1.5e+02 Score=24.00 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=39.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc------CCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA------NANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~------~~~~p~ivv~nK~Dl 77 (165)
.+-+.++|++..-.. +....+-.||.+|+.+.++ ..++..+...+..+.... ..+..+-++.|+.|.
T Consensus 234 ~YD~IiIDtpP~l~~--~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 234 DYDVIVIDSAPNLGI--GTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 456889999987543 3344455889999998764 334444443333332211 012334467899885
No 470
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=47.84 E-value=1.1e+02 Score=26.34 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH-HcC-CeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 56 EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHG-LIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
..+......++|+||.+|+.--. .+...+.++.++. +.+ +.+..+. +.=|+|-.++-+.+++.+-
T Consensus 428 ~Hien~~~fgvpvVVAIN~F~tD--T~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 428 RHIQNIRKFGVPVVVALNKFSTD--TDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred HHHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHh
Confidence 33433333689999999998642 2223345666777 778 4666555 4457788888777776553
No 471
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=47.58 E-value=29 Score=24.35 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=31.6
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
+...+..||++||+....+..--..++.|+..+......++|+.++.+--
T Consensus 59 l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~~~~~gg 108 (171)
T TIGR03567 59 ATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVLPIATGG 108 (171)
T ss_pred HHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEEEEEcCC
Confidence 34446789999999987664433455555555432222567888887753
No 472
>PRK13660 hypothetical protein; Provisional
Probab=47.38 E-value=1.1e+02 Score=22.14 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=7.5
Q ss_pred hhcCCcEEEEEEeCCC
Q 031132 29 YYRGAAGALLVYDITR 44 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~ 44 (165)
.+..+|++|.+||...
T Consensus 126 mv~~sd~~i~~YD~e~ 141 (182)
T PRK13660 126 MLEHTDGALLVYDEEN 141 (182)
T ss_pred HHHccCeEEEEEcCCC
Confidence 3444455555555443
No 473
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=46.20 E-value=31 Score=24.83 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=30.5
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
+...+..||++||+...-...--..++.++..+......++|+.++++-
T Consensus 60 ~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 60 FTEQLAQADGLIVATPVYKASFSGALKTLLDLLPERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCChhhhCCCEEEEEEec
Confidence 3345778999999998766432334444444432222257899988885
No 474
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=45.72 E-value=17 Score=30.78 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCCC-------------hhhHHH----HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 031132 32 GAAGALLVYDITR-------------RETFNH----LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 94 (165)
Q Consensus 32 ~ad~vi~v~D~~~-------------~~s~~~----~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 94 (165)
..|++++|..+.. .+..+. +.++...+......++|+||.+|+.--.. ....+.+..++.+
T Consensus 321 ~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT--~aEi~~I~~~~~~ 398 (557)
T PF01268_consen 321 KPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDT--DAEIELIRELCEE 398 (557)
T ss_dssp --SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS---HHHHHHHHHHCCC
T ss_pred CcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCC--HHHHHHHHHHHHh
Confidence 4688888876431 111222 22233444444446899999999986421 1122345556667
Q ss_pred cCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132 95 HGLIFMEAS--AKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 95 ~~~~~~~vS--a~~~~~i~~l~~~l~~~i~ 122 (165)
.|+++..+. +.=|+|-.++-+.+++.+.
T Consensus 399 ~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 399 LGVRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp CCEEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred CCCCEEEechhhcccccHHHHHHHHHHHhh
Confidence 788855444 4458888888888888873
No 475
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=45.41 E-value=62 Score=23.84 Aligned_cols=40 Identities=13% Similarity=-0.064 Sum_probs=26.4
Q ss_pred EEEEEEEEeCCCchhh------hhhhHhhhcC--CcEEEEEEeCCChh
Q 031132 7 KPIKLQIWDTAGQESF------RSITRSYYRG--AAGALLVYDITRRE 46 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~------~~~~~~~~~~--ad~vi~v~D~~~~~ 46 (165)
....+.++||+|.... .......+.. ++.+|+..+.+...
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccH
Confidence 3467999999997532 2222333344 89999998887644
No 476
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=45.24 E-value=1.3e+02 Score=22.50 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+-+.+.||+|......+ .......+|.+|+++.+ +..++..+..++..+.... . ....++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~i~~~~-~-~~~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARGIKKLK-G-KLGGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHHHHHcC-C-cceEEEEcCCC
Confidence 356789999765422221 11223688999999887 4455666666666555442 1 12334555544
No 477
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=42.90 E-value=1.4e+02 Score=22.21 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=39.9
Q ss_pred EEEEeCCCchh-hhhhhHhhh--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 11 LQIWDTAGQES-FRSITRSYY--RGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 11 ~~l~Dt~G~~~-~~~~~~~~~--~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
+-+-|+-|... ...... .+ ..+|.+|++=|.++.. ..+++..++..+... +.|+++|.--+|
T Consensus 8 l~iSDiHgn~~~le~l~~-~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l---~~pv~~V~GNhD 73 (224)
T cd07388 8 LATSNPKGDLEALEKLVG-LAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA---HLPTFYVPGPQD 73 (224)
T ss_pred EEEEecCCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCceEEEcCCCC
Confidence 56778888643 333333 33 4899999999999865 355555555555433 468877765566
No 478
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=42.90 E-value=1.5e+02 Score=22.46 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=31.1
Q ss_pred EEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q 031132 8 PIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~ 60 (165)
.+-+.+.||+|......+ ....+..||.+|+++.++ ..++..+...+..+..
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll~~i~~ 168 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNICKGIKR 168 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHHHHHHH
Confidence 467889999764322221 122244689999999874 4455555555544433
No 479
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=41.82 E-value=1.3e+02 Score=21.61 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=25.4
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA 58 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i 58 (165)
-+.++|++...... .....+..+|.+|+|+..... +...+...+..+
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~~-~~~~~~~~~~~l 196 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEGRT-TQEAVKEALSAL 196 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECCCC-CHHHHHHHHHHh
Confidence 36778877554322 223334567888888876542 234444444443
No 480
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=41.77 E-value=1.5e+02 Score=23.42 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=38.3
Q ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe---EEE--ecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI---FME--ASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 68 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~--vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
++||+|+.|= .+...++.++++.++| ++. ++......-.+.++.|..-+...++..+
T Consensus 3 v~Vv~N~~dp-----~Sv~ia~yYa~~R~IP~~nii~L~~p~~e~i~~~ef~~~I~~pl~~~L~~~~ 64 (316)
T TIGR03790 3 VAVVVNGADP-----ESVQIARYYAEKRGIPEENLITLDLPPKETISREEFFQQIKEPLRAYLVENG 64 (316)
T ss_pred EEEEEcCCCh-----hHHHHHHHHHHHcCCCHHHEEEEECCCccccccHHHHHHHHHHHHHHHHhcc
Confidence 6788888873 3566777788888877 443 4444555667777888777777655544
No 481
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=41.18 E-value=31 Score=22.44 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=20.3
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDI 42 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~ 42 (165)
+.+||..|+-.-+.-....-+++-+++++++.
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~ 69 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPD 69 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCC
Confidence 67899999876534333344456677777754
No 482
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=40.84 E-value=1.4e+02 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=23.0
Q ss_pred eCCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeC
Q 031132 4 IDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDI 42 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~ 42 (165)
++|+++.+.+.|+.+...-. ...+.++ ..+.+..++-.
T Consensus 36 i~G~~i~l~~~D~~~~p~~a~~~a~~Li-~~~~V~aiiG~ 74 (333)
T cd06331 36 ILGRPLELVVEDPASDPAFAAKAARRLI-RDDKVDAVFGC 74 (333)
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHH-hccCCcEEEec
Confidence 57889999999999865432 2333333 33344444443
No 483
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=40.74 E-value=2e+02 Score=23.34 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=38.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhc---CCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA---RQHA---NANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i---~~~~---~~~~p~ivv~nK~Dl~ 78 (165)
.+-+.|+|+++.-.+- ....+-.||.+|+.+.++ ..++..+...+..+ .... ..+..+-++.|+.|..
T Consensus 234 ~YD~IlID~pPslg~l--t~nAL~AAd~vliPv~~~-~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 234 NYDIIVIDSAPNLGTG--TINVVCAADVIVVATPAE-LFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred cCCEEEEECCCCccHH--HHHHHHHhCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 4678899999887553 344455779999988764 33333333322222 1110 1133455788999853
No 484
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=40.65 E-value=27 Score=26.61 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=21.5
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 97 LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 97 ~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+|++..||.++.|+..+++.|.+.+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 4688889999999999999988753
No 485
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=40.63 E-value=27 Score=20.36 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 103 SAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 103 Sa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
+|++|-|+++.++..++.-++...
T Consensus 44 tAknGgNvKEvme~~lr~~l~~~l 67 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKSVL 67 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHHHS
T ss_pred ecccCCCHHHHHHHHHHHHHHHhc
Confidence 789999999999988887776543
No 486
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=40.08 E-value=46 Score=26.71 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=26.7
Q ss_pred EEEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCC
Q 031132 8 PIKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDIT 43 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~ 43 (165)
...++++|++|.-+ ........++.+|+++-|+++.
T Consensus 83 pa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 83 PAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred eeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 46789999998743 2333445578899999999875
No 487
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=39.67 E-value=1.9e+02 Score=23.14 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh--hhHHHHHH----HHHHHHHhcC-CCC-eEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLAS----WLEDARQHAN-ANM-TIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~--~s~~~~~~----~~~~i~~~~~-~~~-p~ivv~nK~Dl 77 (165)
.+-+.++||++.... .....+..+|.+|+.+.++.. .+...+.. .+..+..... .+. .+.++.|+.|.
T Consensus 234 ~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 309 (387)
T TIGR03453 234 DYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP 309 (387)
T ss_pred cCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC
Confidence 467889999987643 334456688999999987542 22222222 2222322211 112 24568899885
No 488
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=39.59 E-value=29 Score=26.45 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 97 LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 97 ~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+|++..||.++.|+..+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 4688889999999999999887653
No 489
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=39.49 E-value=1.2e+02 Score=22.72 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEE-EEeeCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSY-YRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIM-LIGNKC 75 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~-~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~i-vv~nK~ 75 (165)
.+-+.++|+.|..-...+.... -..||.+|+++.++ ..++..+...+..+.... +.+.+++ ++.|+.
T Consensus 118 ~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCEEEEecCCceeeccccccchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 3567899996643211111000 02689999999874 556666666555443222 2455543 678864
No 490
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=39.36 E-value=1.5e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=26.6
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITR 44 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~--------~ad~vi~v~D~~~ 44 (165)
+++-..+.+|.|...-.++...++. .-|++|-|+|+.+
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 3445678889998765555555543 2499999999865
No 491
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=38.21 E-value=2.2e+02 Score=23.17 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH-------HHHHhc-CCCCeE-EEEeeCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-------DARQHA-NANMTI-MLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~-------~i~~~~-~~~~p~-ivv~nK~Dl 77 (165)
.+-+.|+||++...+ +....+-.||.+|+.+.++. .++..+...+. .+.... .....+ -++.|+.|-
T Consensus 251 ~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 251 DYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQM-LDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 467889999988754 33445667999999997643 33444444332 222221 111223 478999985
No 492
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=37.63 E-value=7.4 Score=33.75 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=46.0
Q ss_pred EEEEEeCCCch-------------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 10 KLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+.|.||.. ....+...|+.....+|+.+.+.+. --....++.........+.-++-|++|.|
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~--d~ats~alkiarevDp~g~RTigvitK~D 210 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS--DIATSPALVVAREVDPGGSRTLEVITKFD 210 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh--hhhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence 46678988853 3567888999999999999887662 11222344555555445667788888888
Q ss_pred CCC
Q 031132 77 LAH 79 (165)
Q Consensus 77 l~~ 79 (165)
+.+
T Consensus 211 lmd 213 (657)
T KOG0446|consen 211 FMD 213 (657)
T ss_pred hhh
Confidence 743
No 493
>PRK13556 azoreductase; Provisional
Probab=36.62 E-value=1.6e+02 Score=21.20 Aligned_cols=46 Identities=7% Similarity=0.147 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-------------CCCCeEEEEee
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-------------NANMTIMLIGN 73 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-------------~~~~p~ivv~n 73 (165)
..++.||++||++..-+..--..++.|+..+.... ..+++++++.+
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 34778999999999887655567788888776541 13567777655
No 494
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=36.16 E-value=1.8e+02 Score=21.72 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=41.7
Q ss_pred hcCCcEEEEEEeCCChhhHHH-HHHHHH-HHH-HhcCCCCeEEEEeeCCCCCCCCC---CCHHHHHHHHHHcCCeEEEec
Q 031132 30 YRGAAGALLVYDITRRETFNH-LASWLE-DAR-QHANANMTIMLIGNKCDLAHRRA---VSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~~s~~~-~~~~~~-~i~-~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~vS 103 (165)
+.+.|.+++|+=.+-.-.--. ...|-. .+. .....++-.||-.|+.-+..... .+.+.+......+|++.+++
T Consensus 76 ~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~V- 154 (227)
T cd02011 76 FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFV- 154 (227)
T ss_pred hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEE-
Confidence 566777777774432211111 122321 111 11113444555677766543332 33456667778889998888
Q ss_pred CCCCCCHHHHH
Q 031132 104 AKTAQNVEEAF 114 (165)
Q Consensus 104 a~~~~~i~~l~ 114 (165)
+|.++.++.
T Consensus 155 --DG~D~~av~ 163 (227)
T cd02011 155 --EGDDPETMH 163 (227)
T ss_pred --CCCCHHHHH
Confidence 455544433
No 495
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=35.46 E-value=38 Score=28.66 Aligned_cols=28 Identities=11% Similarity=-0.159 Sum_probs=24.1
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 97 LIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 97 ~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+|++..||.++.|+..+++.+.+.+-..
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCC
Confidence 4688899999999999999998877543
No 496
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=34.63 E-value=1e+02 Score=26.23 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=43.9
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH--HHHH-----H----cCC--
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE--QFAK-----E----HGL-- 97 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--~~~~-----~----~~~-- 97 (165)
++--.+..|+|.++... .+. ..+...- ...-.++.+||.|+...+....-..+ .... . ...
T Consensus 109 ~~~~~~~~vvd~~d~p~--~i~---p~~~~~v-~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~ 182 (572)
T KOG1249|consen 109 ENPALARKVVDLSDEPC--SID---PLLTNDV-GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD 182 (572)
T ss_pred hcccceEEeeecccCcc--ccc---cchhhcc-cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence 34456666777766432 221 2222221 22236889999998644322211111 1000 0 011
Q ss_pred ----eEEEecCCCCCCHHHHHHHHHHH
Q 031132 98 ----IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 98 ----~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
....++++++.|+++++-.|...
T Consensus 183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 183 FDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred cchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 14567899999999988877654
No 497
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=34.54 E-value=1.2e+02 Score=19.98 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=32.3
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDL 77 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 77 (165)
+.+-|+-|... ......+|.+|++=|..+.....+...++..+... ...+ +++.+| +|.
T Consensus 3 ~~isD~H~~~~-----~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~--~~~~~~~v~GN-HD~ 62 (135)
T cd07379 3 VCISDTHSRHR-----TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSL--PHPHKIVIAGN-HDL 62 (135)
T ss_pred EEEeCCCCCCC-----cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhC--CCCeEEEEECC-CCC
Confidence 34556666543 11235789999999987754444433333333332 1223 456677 553
No 498
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=34.28 E-value=2.1e+02 Score=21.82 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=36.0
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCC
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl 77 (165)
.+.+.|+++--.... ... +-.+|.+|+|..++- .+.......+..+.... ..... ++|.|+.+-
T Consensus 114 D~iliD~~aGl~~~~-~~~-~~~sd~~viVt~pe~-~si~~A~~~i~~~~~~~-~~~~~~~vV~N~v~~ 178 (262)
T COG0455 114 DYILIDTGAGLSRDT-LSF-ILSSDELVIVTTPEP-TSITDAYKTIKILSKLG-LDLLGRRVVLNRVRS 178 (262)
T ss_pred CEEEEeCCCCccHHH-HHH-HHhcCcEEEEeCCCc-chHHHHHHHHHHHHHcC-CccccceEEEEeccc
Confidence 578899986654333 232 334499999997654 33444444444443332 11112 488899983
No 499
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=33.69 E-value=1.2e+02 Score=23.62 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=31.2
Q ss_pred chhhhhhhHhhhcCC-cEEEEEEeC-CChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 19 QESFRSITRSYYRGA-AGALLVYDI-TRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 19 ~~~~~~~~~~~~~~a-d~vi~v~D~-~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+.......+..++.| .+|.+|.|. ||.+-|.++ +......++|+.|+++...+.
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DL------leAa~kR~VpVYiLLD~~~~~ 187 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDL------LEAANKRGVPVYILLDEQNLP 187 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHH------HHHHHhcCCcEEEEechhcCh
Confidence 334455555566655 566677775 443333332 222222579999998887763
No 500
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=33.62 E-value=1.7e+02 Score=21.36 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=37.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHH---HHHHHhcC--CCCeEEEEeeCCCCCCC-CCCCHHHHHHHHHHc
Q 031132 32 GAAGALLVYDITRRETFNHLASWL---EDARQHAN--ANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEH 95 (165)
Q Consensus 32 ~ad~vi~v~D~~~~~s~~~~~~~~---~~i~~~~~--~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~ 95 (165)
+.|++||+-|..+.........|. ..+..... .+.|++.|.-=.|.... .....+.+..+.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 689999999999865433233333 33333321 45787777666776532 223455555555444
Done!