Query 031132
Match_columns 165
No_of_seqs 113 out of 1481
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.7E-32 9.2E-37 200.1 14.7 125 2-126 55-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2E-27 6.9E-32 171.8 16.5 130 2-131 50-179 (206)
3 3cpj_B GTP-binding protein YPT 99.9 1.7E-26 6E-31 169.1 13.8 130 2-131 55-184 (223)
4 2bov_A RAla, RAS-related prote 99.9 8.3E-26 2.8E-30 162.8 17.1 126 2-127 55-181 (206)
5 3tkl_A RAS-related protein RAB 99.9 4.2E-25 1.4E-29 157.9 17.3 128 2-129 58-185 (196)
6 2fu5_C RAS-related protein RAB 99.9 5.4E-25 1.9E-29 155.9 15.7 127 2-128 50-176 (183)
7 2hup_A RAS-related protein RAB 99.9 9.7E-25 3.3E-29 157.6 17.1 126 2-127 71-197 (201)
8 2a5j_A RAS-related protein RAB 99.9 1.4E-24 4.7E-29 155.3 17.0 127 2-128 63-189 (191)
9 1vg8_A RAS-related protein RAB 99.9 2.2E-25 7.5E-30 160.8 12.4 126 2-128 50-180 (207)
10 2ew1_A RAS-related protein RAB 99.9 1.7E-24 6E-29 156.6 16.5 127 2-128 68-194 (201)
11 2bme_A RAB4A, RAS-related prot 99.9 3.4E-24 1.2E-28 152.0 17.5 129 2-130 52-180 (186)
12 3q72_A GTP-binding protein RAD 99.9 2.8E-24 9.5E-29 149.7 15.4 123 2-124 42-165 (166)
13 2o52_A RAS-related protein RAB 99.9 4.5E-24 1.5E-28 153.9 16.6 128 2-129 67-194 (200)
14 1z0f_A RAB14, member RAS oncog 99.9 6.5E-24 2.2E-28 149.3 16.4 122 2-123 57-178 (179)
15 1zbd_A Rabphilin-3A; G protein 99.9 1.2E-23 4E-28 151.5 17.5 127 2-128 50-176 (203)
16 2gf9_A RAS-related protein RAB 99.9 7.3E-24 2.5E-28 151.1 16.3 125 2-126 64-188 (189)
17 2efe_B Small GTP-binding prote 99.9 8.1E-24 2.8E-28 149.3 16.2 123 2-124 54-176 (181)
18 2nzj_A GTP-binding protein REM 99.9 1.1E-23 3.6E-28 147.8 16.6 126 2-127 45-173 (175)
19 3kkq_A RAS-related protein M-R 99.9 8E-24 2.7E-28 149.8 16.0 122 2-123 59-182 (183)
20 2g6b_A RAS-related protein RAB 99.9 8.9E-24 3E-28 149.0 16.0 123 2-124 53-175 (180)
21 3cbq_A GTP-binding protein REM 99.9 8.6E-24 3E-28 152.1 16.3 123 2-124 65-189 (195)
22 3q85_A GTP-binding protein REM 99.9 5.1E-24 1.7E-28 148.8 14.5 123 2-124 44-168 (169)
23 4dsu_A GTPase KRAS, isoform 2B 99.9 1.6E-23 5.5E-28 148.6 17.2 126 2-128 45-171 (189)
24 3tw8_B RAS-related protein RAB 99.9 1E-23 3.4E-28 148.5 16.0 126 2-128 51-176 (181)
25 3dz8_A RAS-related protein RAB 99.9 1.9E-24 6.3E-29 154.6 12.2 125 2-126 65-189 (191)
26 2j0v_A RAC-like GTP-binding pr 99.9 6.4E-25 2.2E-29 159.3 9.9 125 2-127 50-184 (212)
27 3t5g_A GTP-binding protein RHE 99.9 4.1E-24 1.4E-28 151.1 13.7 124 2-125 47-171 (181)
28 2oil_A CATX-8, RAS-related pro 99.9 1.2E-23 4.3E-28 150.3 16.3 126 2-127 67-192 (193)
29 2fn4_A P23, RAS-related protei 99.9 1.6E-23 5.6E-28 147.4 16.0 126 2-127 50-176 (181)
30 1r2q_A RAS-related protein RAB 99.9 1.5E-23 5.3E-28 146.1 15.7 120 2-121 48-167 (170)
31 1z08_A RAS-related protein RAB 99.9 5.9E-24 2E-28 148.5 13.4 121 2-122 48-168 (170)
32 2a9k_A RAS-related protein RAL 99.9 2.8E-23 9.4E-28 147.0 17.0 126 2-127 59-185 (187)
33 1u8z_A RAS-related protein RAL 99.9 1.4E-23 4.7E-28 145.9 15.2 122 2-123 45-167 (168)
34 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-23 4.8E-28 150.3 15.5 123 2-124 68-191 (192)
35 2q3h_A RAS homolog gene family 99.9 2.3E-23 8E-28 149.7 16.2 125 2-127 61-199 (201)
36 2g3y_A GTP-binding protein GEM 99.9 1.9E-23 6.4E-28 152.5 15.9 125 2-126 80-206 (211)
37 1g16_A RAS-related protein SEC 99.9 1.1E-23 3.8E-28 146.9 14.0 122 2-124 45-166 (170)
38 2gf0_A GTP-binding protein DI- 99.9 5.2E-24 1.8E-28 152.6 12.3 121 2-123 49-171 (199)
39 1ek0_A Protein (GTP-binding pr 99.9 3E-23 1E-27 144.6 15.5 120 2-121 45-167 (170)
40 3ihw_A Centg3; RAS, centaurin, 99.9 3.1E-23 1.1E-27 147.8 15.7 120 2-126 60-183 (184)
41 3cph_A RAS-related protein SEC 99.9 8.2E-23 2.8E-27 147.9 17.6 127 2-129 62-188 (213)
42 2hxs_A RAB-26, RAS-related pro 99.9 2.2E-23 7.4E-28 146.7 14.2 122 3-124 49-174 (178)
43 2p5s_A RAS and EF-hand domain 99.9 1.7E-23 5.8E-28 150.5 13.9 122 2-123 70-197 (199)
44 3bc1_A RAS-related protein RAB 99.9 4.7E-23 1.6E-27 146.6 16.0 121 8-128 69-190 (195)
45 3q3j_B RHO-related GTP-binding 99.9 1.2E-23 4.2E-28 153.3 13.0 124 2-126 68-206 (214)
46 3c5c_A RAS-like protein 12; GD 99.9 1.8E-23 6.1E-28 149.2 13.5 121 2-123 62-186 (187)
47 1z0j_A RAB-22, RAS-related pro 99.9 8.8E-23 3E-27 142.3 16.7 120 2-121 48-167 (170)
48 3reg_A RHO-like small GTPase; 99.9 3.2E-23 1.1E-27 148.3 14.7 122 2-124 64-189 (194)
49 2yc2_C IFT27, small RAB-relate 99.9 3.2E-23 1.1E-27 149.2 14.8 126 2-127 64-196 (208)
50 2y8e_A RAB-protein 6, GH09086P 99.9 2.9E-23 9.8E-28 146.0 14.1 121 2-122 56-176 (179)
51 1kao_A RAP2A; GTP-binding prot 99.9 3.1E-23 1.1E-27 143.9 14.1 122 2-123 44-166 (167)
52 1z2a_A RAS-related protein RAB 99.9 3.2E-23 1.1E-27 144.3 14.1 121 2-123 47-167 (168)
53 3oes_A GTPase rhebl1; small GT 99.9 7.8E-24 2.7E-28 152.5 11.4 126 2-127 65-191 (201)
54 2f7s_A C25KG, RAS-related prot 99.9 1.8E-23 6.2E-28 152.1 13.4 120 8-127 83-203 (217)
55 1c1y_A RAS-related protein RAP 99.9 3.6E-23 1.2E-27 143.9 14.3 121 2-122 44-166 (167)
56 2fg5_A RAB-22B, RAS-related pr 99.9 2.1E-23 7E-28 149.3 13.1 122 2-123 65-186 (192)
57 3t1o_A Gliding protein MGLA; G 99.9 1.4E-23 4.8E-28 149.8 12.1 122 3-127 68-196 (198)
58 1x3s_A RAS-related protein RAB 99.9 6.8E-23 2.3E-27 146.2 15.5 122 2-124 57-179 (195)
59 2atv_A RERG, RAS-like estrogen 99.9 6.5E-23 2.2E-27 147.0 15.4 123 2-125 69-193 (196)
60 2iwr_A Centaurin gamma 1; ANK 99.9 8.1E-23 2.8E-27 144.0 15.7 122 2-128 47-174 (178)
61 1z06_A RAS-related protein RAB 99.9 6.4E-23 2.2E-27 146.2 15.1 121 2-122 62-187 (189)
62 2atx_A Small GTP binding prote 99.9 8.2E-23 2.8E-27 146.1 15.5 120 2-122 59-192 (194)
63 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.7E-22 5.9E-27 142.0 16.7 121 2-123 49-174 (177)
64 3con_A GTPase NRAS; structural 99.9 4.3E-22 1.5E-26 141.8 16.9 124 2-126 62-186 (190)
65 1mh1_A RAC1; GTP-binding, GTPa 99.9 6E-23 2E-27 145.3 12.4 121 2-123 46-180 (186)
66 2gco_A H9, RHO-related GTP-bin 99.9 3.4E-22 1.2E-26 144.0 16.2 120 2-122 66-199 (201)
67 3clv_A RAB5 protein, putative; 99.9 5.2E-22 1.8E-26 142.0 17.1 115 9-126 93-207 (208)
68 2j1l_A RHO-related GTP-binding 99.9 1.3E-22 4.4E-27 147.7 14.0 122 2-124 75-210 (214)
69 1m7b_A RND3/RHOE small GTP-bin 99.9 7.2E-23 2.5E-27 145.5 12.0 121 2-123 48-183 (184)
70 2cjw_A GTP-binding protein GEM 99.9 3.7E-22 1.3E-26 143.2 15.5 125 2-126 49-175 (192)
71 2ce2_X GTPase HRAS; signaling 99.9 6.6E-22 2.3E-26 136.9 16.0 120 2-122 44-164 (166)
72 1ky3_A GTP-binding protein YPT 99.9 2.5E-22 8.7E-27 141.4 13.9 120 6-125 55-180 (182)
73 2fv8_A H6, RHO-related GTP-bin 99.9 3.4E-22 1.1E-26 144.7 14.8 122 2-124 66-201 (207)
74 1gwn_A RHO-related GTP-binding 99.9 1.2E-22 4.2E-27 147.2 12.4 121 2-123 69-204 (205)
75 3bwd_D RAC-like GTP-binding pr 99.9 5E-23 1.7E-27 145.3 10.0 120 2-122 49-180 (182)
76 2erx_A GTP-binding protein DI- 99.9 2.5E-22 8.6E-27 140.1 13.2 120 2-121 44-165 (172)
77 4djt_A GTP-binding nuclear pro 99.9 3.5E-22 1.2E-26 145.3 13.4 122 6-127 58-179 (218)
78 3l0i_B RAS-related protein RAB 99.9 4.4E-24 1.5E-28 153.6 2.1 122 2-123 75-196 (199)
79 4gzl_A RAS-related C3 botulinu 99.9 2.6E-22 8.9E-27 145.1 10.3 119 2-121 71-203 (204)
80 1r8s_A ADP-ribosylation factor 99.9 8.5E-23 2.9E-27 141.9 7.3 119 4-124 39-163 (164)
81 4bas_A ADP-ribosylation factor 99.9 2.4E-22 8.3E-27 143.8 8.8 122 4-127 58-193 (199)
82 1f6b_A SAR1; gtpases, N-termin 99.9 1.1E-21 3.6E-26 141.3 11.9 115 2-120 64-196 (198)
83 3gj0_A GTP-binding nuclear pro 99.9 9.8E-22 3.3E-26 143.4 10.8 121 2-125 57-177 (221)
84 1m2o_B GTP-binding protein SAR 99.9 2.3E-21 8E-26 138.6 12.1 115 2-120 62-189 (190)
85 2wkq_A NPH1-1, RAS-related C3 99.9 1.1E-20 3.9E-25 145.1 14.2 121 2-123 196-330 (332)
86 2f9l_A RAB11B, member RAS onco 99.9 6.8E-20 2.3E-24 131.7 17.3 130 2-131 47-176 (199)
87 1fzq_A ADP-ribosylation factor 99.9 7.7E-21 2.6E-25 134.8 12.0 115 8-124 59-179 (181)
88 2b6h_A ADP-ribosylation factor 99.9 3.3E-22 1.1E-26 143.3 4.7 114 7-122 71-190 (192)
89 1upt_A ARL1, ADP-ribosylation 99.9 1.8E-21 6E-26 135.9 8.3 114 8-123 50-169 (171)
90 1zj6_A ADP-ribosylation factor 99.8 3.4E-20 1.2E-24 131.8 14.1 114 9-124 60-179 (187)
91 1cip_A Protein (guanine nucleo 99.8 9.3E-22 3.2E-26 153.4 6.2 119 8-126 192-347 (353)
92 2h57_A ADP-ribosylation factor 99.8 2.9E-20 9.8E-25 132.5 13.2 113 9-123 67-187 (190)
93 3th5_A RAS-related C3 botulinu 99.7 1.1E-22 3.9E-27 146.6 0.0 120 2-122 71-204 (204)
94 1ksh_A ARF-like protein 2; sma 99.8 3.3E-20 1.1E-24 131.5 12.7 115 8-124 61-181 (186)
95 3llu_A RAS-related GTP-binding 99.8 3E-21 1E-25 138.5 7.4 114 6-121 66-195 (196)
96 2h17_A ADP-ribosylation factor 99.8 2.3E-20 7.9E-25 132.1 11.7 110 9-120 65-180 (181)
97 1zd9_A ADP-ribosylation factor 99.8 1.5E-20 5E-25 134.0 10.1 117 6-124 64-186 (188)
98 2x77_A ADP-ribosylation factor 99.8 1.1E-21 3.9E-26 139.6 4.2 115 8-124 65-185 (189)
99 2xtz_A Guanine nucleotide-bind 99.8 6.1E-21 2.1E-25 148.8 8.2 121 7-127 181-349 (354)
100 1moz_A ARL1, ADP-ribosylation 99.8 7.8E-20 2.7E-24 129.1 11.8 115 9-125 62-182 (183)
101 2zej_A Dardarin, leucine-rich 99.8 6E-21 2.1E-25 135.7 5.3 118 6-124 53-179 (184)
102 3ohm_A Guanine nucleotide-bind 99.8 5.4E-21 1.8E-25 147.4 5.0 124 4-127 162-322 (327)
103 1zcb_A G alpha I/13; GTP-bindi 99.8 1.5E-20 5.1E-25 147.0 6.8 120 8-127 200-357 (362)
104 1azs_C GS-alpha; complex (lyas 99.8 4.9E-20 1.7E-24 145.5 9.1 119 8-126 216-388 (402)
105 3c5h_A Glucocorticoid receptor 99.8 2.1E-20 7.2E-25 139.8 6.4 117 4-122 90-254 (255)
106 1oix_A RAS-related protein RAB 99.8 1.4E-18 4.9E-23 124.2 14.6 120 2-121 71-190 (191)
107 3r7w_B Gtpase2, GTP-binding pr 99.8 1.5E-20 5E-25 144.7 3.3 114 8-123 45-174 (331)
108 3o47_A ADP-ribosylation factor 99.8 8.7E-20 3E-24 141.2 7.6 118 4-123 204-327 (329)
109 3lvq_E ARF-GAP with SH3 domain 99.8 5.9E-20 2E-24 149.0 5.5 121 4-126 361-487 (497)
110 4fid_A G protein alpha subunit 99.8 1.3E-19 4.4E-24 140.3 6.6 120 4-123 156-328 (340)
111 2fh5_B SR-beta, signal recogni 99.8 1.8E-18 6E-23 125.3 12.1 113 8-120 53-213 (214)
112 3r7w_A Gtpase1, GTP-binding pr 99.8 1E-18 3.5E-23 134.0 9.6 114 8-122 51-180 (307)
113 2qu8_A Putative nucleolar GTP- 99.8 1.5E-17 5.2E-22 121.9 13.6 118 9-127 76-209 (228)
114 2wji_A Ferrous iron transport 99.7 5.9E-18 2E-22 118.1 9.4 106 9-121 50-163 (165)
115 2lkc_A Translation initiation 99.7 2.6E-17 8.9E-22 115.4 9.7 113 3-127 51-175 (178)
116 2cxx_A Probable GTP-binding pr 99.7 2.6E-17 8.8E-22 116.6 8.5 113 10-125 45-186 (190)
117 1u0l_A Probable GTPase ENGC; p 99.7 2E-17 6.7E-22 126.5 8.1 102 10-118 64-168 (301)
118 3dpu_A RAB family protein; roc 99.7 1.4E-17 4.7E-22 136.3 7.1 114 6-123 95-208 (535)
119 2dyk_A GTP-binding protein; GT 99.7 2.8E-17 9.7E-22 113.3 7.2 103 10-121 50-160 (161)
120 1svi_A GTP-binding protein YSX 99.7 1.1E-16 3.8E-21 113.9 9.5 108 10-121 70-193 (195)
121 2gj8_A MNME, tRNA modification 99.7 1.3E-17 4.4E-22 117.3 4.3 110 3-122 48-165 (172)
122 2wjg_A FEOB, ferrous iron tran 99.7 7.8E-17 2.7E-21 114.1 7.9 108 9-123 54-169 (188)
123 3iev_A GTP-binding protein ERA 99.7 3.6E-16 1.2E-20 119.8 11.2 111 8-121 58-180 (308)
124 3pqc_A Probable GTP-binding pr 99.7 6.2E-16 2.1E-20 109.7 9.7 107 10-122 69-193 (195)
125 3b1v_A Ferrous iron uptake tra 99.6 1.9E-16 6.6E-21 119.4 6.5 107 8-121 48-162 (272)
126 4dcu_A GTP-binding protein ENG 99.6 1.3E-15 4.3E-20 122.5 11.6 117 3-125 239-371 (456)
127 3a1s_A Iron(II) transport prot 99.6 2.3E-16 7.8E-21 118.2 6.8 108 8-122 51-166 (258)
128 3cb4_D GTP-binding protein LEP 99.6 4.1E-15 1.4E-19 122.9 12.8 112 5-122 67-181 (599)
129 3iby_A Ferrous iron transport 99.6 6.1E-16 2.1E-20 115.7 6.5 104 10-120 49-164 (256)
130 2ywe_A GTP-binding protein LEP 99.6 6.5E-15 2.2E-19 121.6 12.8 112 5-122 69-183 (600)
131 1nrj_B SR-beta, signal recogni 99.6 4.9E-16 1.7E-20 112.7 5.1 101 9-109 55-170 (218)
132 4dhe_A Probable GTP-binding pr 99.6 2.4E-15 8.3E-20 109.3 8.8 113 9-125 79-213 (223)
133 3sjy_A Translation initiation 99.6 1.7E-14 6E-19 114.2 13.3 113 7-121 73-190 (403)
134 3gee_A MNME, tRNA modification 99.6 4E-15 1.4E-19 120.1 9.8 113 3-122 277-397 (476)
135 2hjg_A GTP-binding protein ENG 99.6 4.8E-15 1.7E-19 118.5 10.1 116 3-124 219-350 (436)
136 2e87_A Hypothetical protein PH 99.6 2.6E-14 8.9E-19 111.5 12.8 113 9-124 214-337 (357)
137 2yv5_A YJEQ protein; hydrolase 99.6 5.5E-15 1.9E-19 113.0 7.4 110 5-117 46-163 (302)
138 3qq5_A Small GTP-binding prote 99.6 3.7E-15 1.3E-19 118.6 6.6 105 10-122 84-195 (423)
139 1s0u_A EIF-2-gamma, translatio 99.6 3.9E-14 1.3E-18 112.4 11.8 113 8-122 80-197 (408)
140 3k53_A Ferrous iron transport 99.5 1.2E-14 4.2E-19 109.3 8.3 107 10-122 51-165 (271)
141 1lnz_A SPO0B-associated GTP-bi 99.5 5.6E-15 1.9E-19 114.7 6.6 111 9-123 206-330 (342)
142 3i8s_A Ferrous iron transport 99.5 2.3E-15 7.8E-20 113.6 3.8 106 9-121 50-167 (274)
143 3l82_B F-box only protein 4; T 99.5 5.5E-15 1.9E-19 106.6 5.3 104 16-122 109-222 (227)
144 1wf3_A GTP-binding protein; GT 99.5 1.9E-14 6.6E-19 109.9 7.9 107 8-121 54-171 (301)
145 1xzp_A Probable tRNA modificat 99.5 9.7E-14 3.3E-18 112.2 12.4 111 3-124 287-406 (482)
146 1mky_A Probable GTP-binding pr 99.5 5.8E-14 2E-18 112.3 10.7 111 3-123 45-166 (439)
147 3tr5_A RF-3, peptide chain rel 99.5 7E-14 2.4E-18 114.2 10.4 72 4-79 77-148 (528)
148 3p26_A Elongation factor 1 alp 99.5 5.5E-14 1.9E-18 113.8 9.6 108 4-113 106-228 (483)
149 1kk1_A EIF2gamma; initiation o 99.5 7.9E-14 2.7E-18 110.6 9.9 113 8-122 82-199 (410)
150 1wb1_A Translation elongation 99.5 1.5E-13 5.3E-18 111.1 10.3 107 9-122 73-188 (482)
151 1jny_A EF-1-alpha, elongation 99.5 3.8E-14 1.3E-18 113.3 6.5 111 4-115 79-205 (435)
152 3j2k_7 ERF3, eukaryotic polype 99.5 7.8E-14 2.7E-18 111.6 8.1 108 5-115 91-217 (439)
153 1g7s_A Translation initiation 99.5 4.3E-13 1.5E-17 110.8 12.5 108 10-124 71-219 (594)
154 1zun_B Sulfate adenylate trans 99.5 6.7E-14 2.3E-18 111.9 7.4 106 7-115 102-216 (434)
155 2elf_A Protein translation elo 99.5 9.1E-14 3.1E-18 109.0 7.8 113 5-123 56-180 (370)
156 2c78_A Elongation factor TU-A; 99.5 4.6E-14 1.6E-18 111.8 5.7 102 4-109 70-180 (405)
157 2hjg_A GTP-binding protein ENG 99.5 5.1E-14 1.7E-18 112.6 5.3 106 8-122 50-164 (436)
158 3l2o_B F-box only protein 4; s 99.5 1.1E-13 3.6E-18 104.4 6.7 105 16-123 194-308 (312)
159 3geh_A MNME, tRNA modification 99.4 2E-13 6.9E-18 109.8 8.2 110 2-123 267-384 (462)
160 1d2e_A Elongation factor TU (E 99.4 1.5E-13 5.2E-18 108.6 6.8 113 5-121 62-193 (397)
161 2qtf_A Protein HFLX, GTP-bindi 99.4 6.2E-12 2.1E-16 98.4 15.4 121 2-126 221-357 (364)
162 1r5b_A Eukaryotic peptide chai 99.4 3.3E-14 1.1E-18 114.6 2.1 107 8-114 120-243 (467)
163 3izy_P Translation initiation 99.4 4.2E-14 1.4E-18 115.4 1.8 109 10-122 53-167 (537)
164 1ega_A Protein (GTP-binding pr 99.4 2.3E-13 7.8E-18 103.9 5.4 109 8-121 55-173 (301)
165 1mky_A Probable GTP-binding pr 99.4 5.1E-12 1.7E-16 101.1 13.4 116 2-123 223-355 (439)
166 1f60_A Elongation factor EEF1A 99.4 5E-13 1.7E-17 107.5 6.7 107 4-113 80-202 (458)
167 3avx_A Elongation factor TS, e 99.4 6.4E-13 2.2E-17 115.7 7.6 113 4-120 354-483 (1289)
168 3izq_1 HBS1P, elongation facto 99.4 2.7E-13 9.2E-18 112.5 4.4 110 4-113 240-362 (611)
169 4dcu_A GTP-binding protein ENG 99.3 5.9E-13 2E-17 107.0 4.2 107 6-121 68-183 (456)
170 2qag_A Septin-2, protein NEDD5 99.3 2.1E-13 7E-18 106.7 1.4 116 4-125 90-235 (361)
171 2ged_A SR-beta, signal recogni 99.3 9.7E-13 3.3E-17 93.3 4.7 74 8-81 90-172 (193)
172 2aka_B Dynamin-1; fusion prote 99.3 1.3E-12 4.5E-17 98.9 5.2 110 9-121 125-251 (299)
173 1zo1_I IF2, translation initia 99.3 3.4E-13 1.2E-17 109.3 1.5 104 9-119 51-163 (501)
174 2dy1_A Elongation factor G; tr 99.3 1.1E-11 3.6E-16 103.9 10.4 68 7-78 72-139 (665)
175 3lxx_A GTPase IMAP family memb 99.3 2.8E-11 9.7E-16 89.0 10.7 111 9-121 78-212 (239)
176 3t5d_A Septin-7; GTP-binding p 99.3 1.7E-12 5.9E-17 97.7 3.7 112 5-120 61-201 (274)
177 2xtp_A GTPase IMAP family memb 99.3 9.4E-12 3.2E-16 92.6 7.5 113 9-123 71-208 (260)
178 2h5e_A Peptide chain release f 99.2 4.8E-11 1.6E-15 97.5 10.3 72 4-79 77-148 (529)
179 1dar_A EF-G, elongation factor 99.2 4.3E-11 1.5E-15 100.6 9.7 68 8-79 76-143 (691)
180 2rdo_7 EF-G, elongation factor 99.2 1.8E-10 6.2E-15 97.0 12.8 70 6-79 79-148 (704)
181 3t34_A Dynamin-related protein 99.2 1.2E-11 4.1E-16 96.5 3.8 108 10-119 137-257 (360)
182 2j69_A Bacterial dynamin-like 99.2 4.6E-11 1.6E-15 100.5 7.3 111 10-123 175-325 (695)
183 3h2y_A GTPase family protein; 99.2 2.5E-10 8.6E-15 89.4 10.6 96 18-120 55-157 (368)
184 3lxw_A GTPase IMAP family memb 99.1 1.6E-10 5.5E-15 85.7 8.9 112 9-122 70-207 (247)
185 3mca_A HBS1, elongation factor 99.1 3.6E-12 1.2E-16 105.4 -0.7 103 6-111 252-371 (592)
186 1udx_A The GTP-binding protein 99.1 3.8E-10 1.3E-14 89.6 10.9 113 9-124 205-326 (416)
187 2xex_A Elongation factor G; GT 99.1 4.3E-10 1.5E-14 94.6 10.7 68 8-79 74-141 (693)
188 1yrb_A ATP(GTP)binding protein 99.1 4.3E-10 1.5E-14 83.4 9.1 112 9-123 109-257 (262)
189 1pui_A ENGB, probable GTP-bind 99.1 7.2E-10 2.5E-14 79.4 9.1 106 10-121 73-197 (210)
190 1jwy_B Dynamin A GTPase domain 99.1 3.2E-10 1.1E-14 86.5 7.6 111 9-122 131-261 (315)
191 3ec1_A YQEH GTPase; atnos1, at 99.0 8.1E-10 2.8E-14 86.5 8.4 97 17-120 56-159 (369)
192 3vqt_A RF-3, peptide chain rel 99.0 1.8E-09 6.1E-14 88.6 10.3 73 3-79 94-166 (548)
193 3p32_A Probable GTPase RV1496/ 99.0 1.8E-10 6.3E-15 89.7 3.2 106 8-124 171-285 (355)
194 2wsm_A Hydrogenase expression/ 99.0 9.4E-10 3.2E-14 79.5 6.2 105 9-124 109-215 (221)
195 2qnr_A Septin-2, protein NEDD5 98.9 2.4E-10 8.3E-15 87.1 2.3 113 6-123 73-214 (301)
196 3def_A T7I23.11 protein; chlor 98.9 1.3E-09 4.4E-14 81.3 6.0 75 9-83 84-169 (262)
197 1wxq_A GTP-binding protein; st 98.9 1.4E-09 4.7E-14 86.0 4.3 38 8-45 70-114 (397)
198 1n0u_A EF-2, elongation factor 98.9 2.9E-09 9.8E-14 91.3 6.3 70 5-78 94-163 (842)
199 1puj_A YLQF, conserved hypothe 98.8 1.1E-08 3.6E-13 77.4 8.3 100 15-124 5-107 (282)
200 2x2e_A Dynamin-1; nitration, h 98.8 2.1E-10 7.2E-15 89.2 -1.2 108 9-119 130-254 (353)
201 1h65_A Chloroplast outer envel 98.8 4.7E-09 1.6E-13 78.6 5.6 74 7-81 85-170 (270)
202 2p67_A LAO/AO transport system 98.8 4.2E-09 1.4E-13 81.6 4.8 103 9-122 149-260 (341)
203 3j25_A Tetracycline resistance 98.7 8.8E-09 3E-13 85.9 5.5 73 2-78 60-132 (638)
204 2qag_C Septin-7; cell cycle, c 98.7 5.7E-09 2E-13 82.9 2.4 108 7-119 86-223 (418)
205 2www_A Methylmalonic aciduria 98.7 1.6E-07 5.4E-12 72.9 10.3 102 9-122 167-278 (349)
206 4fn5_A EF-G 1, elongation fact 98.6 3.6E-07 1.2E-11 77.1 11.5 68 7-78 83-150 (709)
207 3zvr_A Dynamin-1; hydrolase, D 98.6 2E-08 6.8E-13 84.9 2.4 108 10-120 151-275 (772)
208 2qpt_A EH domain-containing pr 98.5 6.4E-08 2.2E-12 79.4 3.9 67 10-79 155-232 (550)
209 1t9h_A YLOQ, probable GTPase E 98.4 5E-08 1.7E-12 74.5 1.9 91 22-115 76-169 (307)
210 1jal_A YCHF protein; nucleotid 98.4 8.6E-06 2.9E-10 63.5 13.3 41 65-105 199-239 (363)
211 3cnl_A YLQF, putative uncharac 98.4 1.9E-07 6.6E-12 69.7 3.5 90 17-119 5-97 (262)
212 2qm8_A GTPase/ATPase; G protei 98.4 8E-07 2.7E-11 68.7 6.8 104 8-122 147-260 (337)
213 2dby_A GTP-binding protein; GD 98.3 2E-06 7E-11 67.2 8.1 52 65-116 201-255 (368)
214 2rcn_A Probable GTPase ENGC; Y 98.3 3E-06 1E-10 65.9 8.0 85 29-116 127-212 (358)
215 2hf9_A Probable hydrogenase ni 98.3 1.1E-06 3.8E-11 63.4 5.1 59 65-123 164-224 (226)
216 4a9a_A Ribosome-interacting GT 97.5 0.0017 5.8E-08 50.8 12.3 88 9-98 119-223 (376)
217 2j37_W Signal recognition part 97.4 0.00023 7.7E-09 57.8 5.7 101 9-120 184-310 (504)
218 3dm5_A SRP54, signal recogniti 96.7 0.0077 2.6E-07 48.1 8.5 86 9-104 183-274 (443)
219 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0014 4.6E-08 51.7 3.8 36 10-45 87-129 (396)
220 1ni3_A YCHF GTPase, YCHF GTP-b 96.3 0.053 1.8E-06 42.6 11.1 35 10-44 86-127 (392)
221 1j8m_F SRP54, signal recogniti 95.9 0.042 1.4E-06 41.4 8.5 91 9-112 181-280 (297)
222 3kl4_A SRP54, signal recogniti 95.3 0.04 1.4E-06 43.8 6.6 90 9-110 180-277 (433)
223 4dzz_A Plasmid partitioning pr 94.8 0.11 3.7E-06 36.2 7.0 85 9-100 76-162 (206)
224 3ea0_A ATPase, para family; al 94.3 0.51 1.7E-05 33.6 9.8 88 9-104 119-206 (245)
225 2v3c_C SRP54, signal recogniti 94.3 0.45 1.5E-05 37.7 10.2 83 9-102 181-271 (432)
226 3cwq_A Para family chromosome 93.3 0.8 2.7E-05 32.2 9.2 85 9-100 68-153 (209)
227 3end_A Light-independent proto 92.9 1.5 5.2E-05 32.5 10.6 84 9-101 157-242 (307)
228 3k9g_A PF-32 protein; ssgcid, 91.9 0.68 2.3E-05 33.6 7.4 64 9-76 145-208 (267)
229 1g3q_A MIND ATPase, cell divis 91.8 1.9 6.4E-05 30.4 9.6 65 9-78 112-176 (237)
230 1hyq_A MIND, cell division inh 91.6 2 6.7E-05 30.9 9.6 83 9-100 111-193 (263)
231 3pg5_A Uncharacterized protein 91.6 1.5 5E-05 33.7 9.3 123 8-133 153-357 (361)
232 1tq4_A IIGP1, interferon-induc 91.6 1.9 6.6E-05 33.9 10.0 104 10-121 121-251 (413)
233 1wcv_1 SOJ, segregation protei 90.8 1.8 6.1E-05 31.2 8.7 66 9-77 112-181 (257)
234 2ph1_A Nucleotide-binding prot 90.5 0.92 3.1E-05 32.9 7.0 90 8-101 128-224 (262)
235 3kjh_A CO dehydrogenase/acetyl 89.8 1.4 4.8E-05 31.2 7.3 63 9-76 132-194 (254)
236 3ec1_A YQEH GTPase; atnos1, at 89.1 0.016 5.3E-07 45.1 -3.8 94 11-109 214-317 (369)
237 3q9l_A Septum site-determining 88.1 1.4 4.8E-05 31.5 6.4 66 9-77 114-185 (260)
238 1cp2_A CP2, nitrogenase iron p 86.1 7.6 0.00026 27.8 10.4 87 9-100 116-205 (269)
239 2oze_A ORF delta'; para, walke 85.8 3.6 0.00012 30.2 7.6 66 9-77 155-224 (298)
240 2xxa_A Signal recognition part 85.7 5.9 0.0002 31.3 9.2 82 9-101 184-272 (433)
241 3h2y_A GTPase family protein; 84.9 0.018 6E-07 44.8 -5.7 89 11-104 213-311 (368)
242 2afh_E Nitrogenase iron protei 82.3 12 0.00042 27.2 9.7 87 9-100 119-208 (289)
243 3e70_C DPA, signal recognition 80.8 3 0.0001 31.6 5.5 90 11-112 214-309 (328)
244 3bfv_A CAPA1, CAPB2, membrane 80.5 4 0.00014 29.9 5.9 64 9-77 192-256 (271)
245 2ffh_A Protein (FFH); SRP54, s 80.0 9 0.00031 30.2 8.1 85 9-103 181-271 (425)
246 2qag_B Septin-6, protein NEDD5 79.4 0.84 2.9E-05 36.2 2.0 66 35-105 151-218 (427)
247 3szr_A Interferon-induced GTP- 78.4 3.4 0.00011 34.2 5.4 67 10-79 148-228 (608)
248 1vma_A Cell division protein F 76.9 18 0.00062 27.0 8.7 85 10-104 188-284 (306)
249 2xj4_A MIPZ; replication, cell 76.6 1.7 5.7E-05 32.0 2.8 34 9-44 104-137 (286)
250 1zu4_A FTSY; GTPase, signal re 74.6 25 0.00084 26.4 9.5 91 9-112 192-295 (320)
251 1ls1_A Signal recognition part 73.5 25 0.00085 26.0 8.7 85 9-103 181-271 (295)
252 3la6_A Tyrosine-protein kinase 73.2 17 0.00059 26.7 7.7 66 9-78 202-267 (286)
253 2px0_A Flagellar biosynthesis 70.7 7.3 0.00025 29.0 5.1 85 9-103 183-273 (296)
254 4a9a_A Ribosome-interacting GT 70.0 17 0.00057 28.2 7.1 83 25-121 216-298 (376)
255 3sop_A Neuronal-specific septi 66.6 14 0.00049 26.9 5.9 65 32-101 111-178 (270)
256 1bif_A 6-phosphofructo-2-kinas 65.2 9 0.00031 30.3 4.9 50 11-61 89-148 (469)
257 3ez9_A Para; DNA binding, wing 64.1 29 0.00098 26.7 7.5 65 9-76 248-321 (403)
258 2ark_A Flavodoxin; FMN, struct 61.7 31 0.0011 23.3 6.6 62 9-76 35-99 (188)
259 4hs4_A Chromate reductase; tri 56.6 16 0.00056 25.3 4.5 74 26-100 67-143 (199)
260 3k1y_A Oxidoreductase; structu 54.0 13 0.00044 25.7 3.5 71 26-98 79-150 (191)
261 2vzf_A NADH-dependent FMN redu 54.0 15 0.00052 25.1 4.0 71 28-100 65-136 (197)
262 2a5l_A Trp repressor binding p 53.9 39 0.0013 22.8 6.1 74 27-100 66-143 (200)
263 3cio_A ETK, tyrosine-protein k 53.8 30 0.001 25.5 5.8 65 9-78 214-279 (299)
264 1ko7_A HPR kinase/phosphatase; 52.7 14 0.00048 27.9 3.8 56 58-120 73-128 (314)
265 2yhs_A FTSY, cell division pro 50.9 48 0.0017 26.8 6.8 91 10-112 377-479 (503)
266 2zki_A 199AA long hypothetical 48.2 37 0.0013 22.9 5.2 74 28-101 66-143 (199)
267 3u7r_A NADPH-dependent FMN red 47.9 25 0.00085 24.3 4.2 72 26-98 61-136 (190)
268 3svl_A Protein YIEF; E. coli C 47.5 38 0.0013 23.2 5.1 74 26-100 66-142 (193)
269 3hyn_A Putative signal transdu 47.0 39 0.0013 23.5 5.0 54 19-76 66-120 (189)
270 3do6_A Formate--tetrahydrofola 46.6 37 0.0013 27.5 5.4 64 56-121 351-416 (543)
271 3ha2_A NADPH-quinone reductase 46.4 66 0.0023 21.8 6.3 64 11-75 31-102 (177)
272 3gfs_A FMN-dependent NADPH-azo 46.2 10 0.00035 25.4 2.0 74 27-101 58-131 (174)
273 2f62_A Nucleoside 2-deoxyribos 42.1 35 0.0012 22.9 4.1 42 27-75 62-108 (161)
274 3lcm_A SMU.1420, putative oxid 41.9 31 0.0011 23.6 4.0 49 27-75 68-129 (196)
275 3fkq_A NTRC-like two-domain pr 41.6 36 0.0012 25.9 4.7 49 8-59 259-307 (373)
276 3fvw_A Putative NAD(P)H-depend 41.5 25 0.00085 24.0 3.4 72 26-99 61-142 (192)
277 2nx2_A Hypothetical protein YP 41.1 33 0.0011 23.5 4.0 21 24-44 122-142 (181)
278 2khz_A C-MYC-responsive protei 39.7 43 0.0015 22.4 4.3 42 28-76 73-114 (165)
279 3fwy_A Light-independent proto 38.7 1.2E+02 0.0041 22.5 10.6 82 10-100 165-248 (314)
280 3ehd_A Uncharacterized conserv 38.4 46 0.0016 22.4 4.2 40 29-75 66-107 (162)
281 3b6i_A Flavoprotein WRBA; flav 37.4 48 0.0016 22.2 4.4 74 27-101 63-140 (198)
282 1t0i_A YLR011WP; FMN binding p 37.3 30 0.001 23.2 3.3 72 26-101 78-149 (191)
283 1rtt_A Conserved hypothetical 37.3 21 0.00072 24.2 2.5 72 28-100 68-142 (193)
284 1ydg_A Trp repressor binding p 36.8 47 0.0016 22.7 4.3 75 27-101 73-151 (211)
285 3ez2_A Plasmid partition prote 36.5 81 0.0028 24.0 6.0 34 9-44 245-278 (398)
286 2amj_A Modulator of drug activ 36.1 1E+02 0.0035 21.1 7.1 48 10-58 49-96 (204)
287 1uf3_A Hypothetical protein TT 35.8 99 0.0034 20.8 6.7 63 11-77 9-75 (228)
288 1s2d_A Purine trans deoxyribos 34.8 66 0.0023 21.7 4.6 37 29-72 78-116 (167)
289 1rli_A Trp repressor binding p 34.3 46 0.0016 22.0 3.8 73 28-100 67-151 (184)
290 2fz5_A Flavodoxin; alpha/beta 33.2 39 0.0013 21.1 3.1 68 29-100 43-112 (137)
291 4fyk_A Deoxyribonucleoside 5'- 32.1 60 0.0021 21.6 4.0 78 28-119 64-141 (152)
292 1sqs_A Conserved hypothetical 30.6 55 0.0019 23.0 3.9 98 28-127 75-179 (242)
293 3gv0_A Transcriptional regulat 29.4 1.3E+02 0.0046 21.1 5.9 58 9-76 41-100 (288)
294 1f8y_A Nucleoside 2-deoxyribos 29.2 85 0.0029 20.9 4.4 40 29-75 75-116 (157)
295 2q62_A ARSH; alpha/beta, flavo 29.1 34 0.0012 24.6 2.5 71 26-98 92-167 (247)
296 3eb2_A Putative dihydrodipicol 28.9 87 0.003 23.1 4.8 69 31-103 98-166 (300)
297 3s2y_A Chromate reductase; ura 34.0 13 0.00043 25.9 0.0 49 26-74 67-118 (199)
298 1rj9_A FTSY, signal recognitio 27.9 1.8E+02 0.0062 21.4 8.5 83 11-103 187-281 (304)
299 3qk7_A Transcriptional regulat 27.9 1E+02 0.0035 21.9 5.1 57 10-76 42-99 (294)
300 1t5b_A Acyl carrier protein ph 27.4 53 0.0018 22.0 3.2 73 28-100 82-169 (201)
301 1byi_A Dethiobiotin synthase; 27.0 1.5E+02 0.0051 20.0 8.5 87 9-101 109-201 (224)
302 3pzx_A Formate--tetrahydrofola 26.9 33 0.0011 28.0 2.2 68 54-123 363-430 (557)
303 2ehh_A DHDPS, dihydrodipicolin 26.6 87 0.003 23.0 4.4 38 31-70 94-131 (294)
304 2yxg_A DHDPS, dihydrodipicolin 26.3 87 0.003 22.9 4.4 38 31-70 94-131 (289)
305 1xky_A Dihydrodipicolinate syn 25.6 87 0.003 23.1 4.3 38 31-70 106-143 (301)
306 1w3i_A EDA, 2-keto-3-deoxy glu 25.6 95 0.0033 22.8 4.5 38 31-70 90-128 (293)
307 3f2v_A General stress protein 25.5 62 0.0021 22.3 3.2 49 27-75 53-110 (192)
308 3cpr_A Dihydrodipicolinate syn 25.1 95 0.0033 23.0 4.4 38 31-70 110-147 (304)
309 3tak_A DHDPS, dihydrodipicolin 25.0 97 0.0033 22.7 4.4 39 31-71 95-133 (291)
310 3qze_A DHDPS, dihydrodipicolin 24.8 95 0.0032 23.1 4.4 39 31-71 117-155 (314)
311 1d4a_A DT-diaphorase, quinone 24.6 72 0.0025 23.1 3.6 47 30-76 91-150 (273)
312 2yvt_A Hypothetical protein AQ 24.4 1.8E+02 0.0061 20.1 7.7 37 11-47 9-47 (260)
313 3flu_A DHDPS, dihydrodipicolin 24.4 1E+02 0.0034 22.7 4.4 45 31-77 101-149 (297)
314 2ojp_A DHDPS, dihydrodipicolin 24.0 90 0.0031 22.9 4.1 38 31-70 95-132 (292)
315 3n0x_A Possible substrate bind 23.8 2.2E+02 0.0075 20.9 6.4 18 4-21 42-59 (374)
316 1o5k_A DHDPS, dihydrodipicolin 23.6 90 0.0031 23.1 4.1 38 31-70 106-143 (306)
317 2v9d_A YAGE; dihydrodipicolini 23.6 95 0.0033 23.5 4.2 38 31-70 125-162 (343)
318 3d0c_A Dihydrodipicolinate syn 23.0 85 0.0029 23.4 3.8 40 31-73 105-144 (314)
319 3l21_A DHDPS, dihydrodipicolin 22.7 92 0.0032 23.1 3.9 54 31-92 109-166 (304)
320 2r8w_A AGR_C_1641P; APC7498, d 22.6 87 0.003 23.6 3.8 38 31-70 128-165 (332)
321 4gnr_A ABC transporter substra 22.5 2E+02 0.007 20.8 5.9 19 4-22 44-62 (353)
322 2q9u_A A-type flavoprotein; fl 22.3 1.3E+02 0.0044 22.9 4.8 66 29-98 304-371 (414)
323 2rfg_A Dihydrodipicolinate syn 22.3 91 0.0031 23.0 3.8 38 31-70 94-131 (297)
324 3na8_A Putative dihydrodipicol 22.2 90 0.0031 23.3 3.8 65 31-103 118-187 (315)
325 5nul_A Flavodoxin; electron tr 22.1 89 0.0031 19.5 3.4 67 29-99 42-110 (138)
326 2nuw_A 2-keto-3-deoxygluconate 22.1 95 0.0033 22.7 3.9 38 31-70 90-128 (288)
327 3rl5_A Metallophosphoesterase 21.9 1.7E+02 0.0059 21.6 5.3 60 11-77 63-122 (296)
328 2r91_A 2-keto-3-deoxy-(6-phosp 21.8 96 0.0033 22.7 3.9 38 31-70 89-127 (286)
329 3daq_A DHDPS, dihydrodipicolin 21.8 90 0.0031 22.9 3.7 54 32-93 97-154 (292)
330 1f6k_A N-acetylneuraminate lya 21.7 90 0.0031 22.9 3.7 38 31-70 98-135 (293)
331 3i09_A Periplasmic branched-ch 21.5 2.4E+02 0.0083 20.6 7.5 18 4-21 40-57 (375)
332 1eiw_A Hypothetical protein MT 20.9 1.4E+02 0.0048 18.6 3.9 42 28-73 34-75 (111)
333 2wkj_A N-acetylneuraminate lya 20.6 96 0.0033 22.9 3.7 39 31-70 105-143 (303)
334 3tem_A Ribosyldihydronicotinam 20.2 1.1E+02 0.0038 21.5 3.8 48 29-76 89-149 (228)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.7e-32 Score=200.06 Aligned_cols=125 Identities=44% Similarity=0.749 Sum_probs=114.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|+++|+.+++.|+++++++++|||.++..+|+.+..|+..+......++|++||+||+|+...+
T Consensus 55 ~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 55 MYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 46788899999999999999999999999999999999999999999999999999988776789999999999998888
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.++.+++..++..++++|++|||++|.||+++|+.|.+.+.....
T Consensus 135 ~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred cccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999999999999999999988865443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=2e-27 Score=171.79 Aligned_cols=130 Identities=42% Similarity=0.791 Sum_probs=116.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus 50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 45788889999999999999999999999999999999999999999999999999887765678999999999997766
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 131 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~ 131 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.++.......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179 (206)
T ss_dssp CSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 77888888888889999999999999999999999999998876555433
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-26 Score=169.15 Aligned_cols=130 Identities=50% Similarity=0.852 Sum_probs=110.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++|+|||++++.+++.+..|+..+......+.|++||+||+|+....
T Consensus 55 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 55 LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred EEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 45788889999999999999999999999999999999999999999999999999887755578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 131 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~ 131 (165)
.+..++...++...+++++++||+++.|++++|++|.+.+.++...++..
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence 77888888889889999999999999999999999999998876666544
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=8.3e-26 Score=162.77 Aligned_cols=126 Identities=33% Similarity=0.570 Sum_probs=114.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus 55 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred EEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 45788889999999999999999999999999999999999999999999999999887754 47999999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+..+++..++..++++++++||++|.|++++|++|.+.+..++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 181 (206)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccc
Confidence 67888888889988999999999999999999999999999886543
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=4.2e-25 Score=157.90 Aligned_cols=128 Identities=49% Similarity=0.876 Sum_probs=115.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 58 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 58 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 46788889999999999999999999999999999999999999999999999999988765679999999999998777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+.......++..++++++++||++|.|++++|++|.+.+.++.....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp CSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 788888899999999999999999999999999999999998766554
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=5.4e-25 Score=155.88 Aligned_cols=127 Identities=50% Similarity=0.885 Sum_probs=101.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..
T Consensus 50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 45788889999999999999999999999999999999999999999999999999887755678999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+..+++..++..++++++++||++|.|++++|++|.+.+.++..+.
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176 (183)
T ss_dssp CSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 77888888999999999999999999999999999999998876653
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=9.7e-25 Score=157.58 Aligned_cols=126 Identities=48% Similarity=0.784 Sum_probs=114.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|++||+||+|+...+
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 71 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence 45778889999999999999999999999999999999999999999999999999887765679999999999997766
Q ss_pred CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.+..+++..++...++ +++++||++|.|++++|++|.+.+.++...
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 197 (201)
T 2hup_A 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197 (201)
T ss_dssp CSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 7888889999999999 899999999999999999999999876543
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=1.4e-24 Score=155.26 Aligned_cols=127 Identities=81% Similarity=1.202 Sum_probs=115.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 63 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 142 (191)
T 2a5j_A 63 VNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142 (191)
T ss_dssp EEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence 45788889999999999999999999999999999999999999999999999999887755689999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+..++...++...+++++++||+++.|++++|++|.+.+.++..++
T Consensus 143 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 189 (191)
T 2a5j_A 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189 (191)
T ss_dssp CSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 78888888899999999999999999999999999999998876654
No 9
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=2.2e-25 Score=160.78 Aligned_cols=126 Identities=37% Similarity=0.661 Sum_probs=109.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL 77 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl 77 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+
T Consensus 50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (207)
T 1vg8_A 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129 (207)
T ss_dssp EESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred EEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCC
Confidence 34677788999999999999999999999999999999999999999999999988876642 36899999999999
Q ss_pred CCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 78 AHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
. ...+..++...++. ..+++++++||++|.|++++|++|.+.+.++....
T Consensus 130 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 130 E-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180 (207)
T ss_dssp S-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 6 44566777777776 56789999999999999999999999998866544
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.7e-24 Score=156.58 Aligned_cols=127 Identities=44% Similarity=0.769 Sum_probs=114.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 68 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 68 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp EEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 45788889999999999999999999999999999999999999999999999999887765678999999999997667
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.++....
T Consensus 148 ~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194 (201)
T ss_dssp SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 78888888888888999999999999999999999999998765443
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=3.4e-24 Score=151.99 Aligned_cols=129 Identities=59% Similarity=0.906 Sum_probs=116.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus 52 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 52 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131 (186)
T ss_dssp EEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 45788889999999999999999999999999999999999999999999999988877655689999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 130 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~ 130 (165)
.+...+...++...+++++++||++|.|++++|+++.+.+.++..+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~ 180 (186)
T 2bme_A 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180 (186)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC-
T ss_pred ccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCC
Confidence 7888888889999999999999999999999999999999988776543
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=2.8e-24 Score=149.73 Aligned_cols=123 Identities=26% Similarity=0.385 Sum_probs=97.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 42 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 42 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp EEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred EEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 46789999999999999999999999999999999999999999999999999998876543 57999999999999877
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+..++...++...+++++++||++|.|++++|++|.+.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 78888888999999999999999999999999999999988765
No 13
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=153.86 Aligned_cols=128 Identities=60% Similarity=0.931 Sum_probs=116.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 67 VNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp EEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred EEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 45778889999999999999999999999999999999999999999999999998877655679999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+...+...++...+++++++||++|.|++++|++|.+.+.++....+
T Consensus 147 ~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 778888888899999999999999999999999999999998877654
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=6.5e-24 Score=149.26 Aligned_cols=122 Identities=65% Similarity=1.054 Sum_probs=111.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++...+..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 57 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 57 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 45778889999999999999999999999999999999999999999999999998887765689999999999997766
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 778888889999999999999999999999999999988754
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=1.2e-23 Score=151.51 Aligned_cols=127 Identities=45% Similarity=0.781 Sum_probs=115.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus 50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 50 IYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred EEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 45678889999999999999999999999999999999999999999999999998877654578999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+..++...++..++++++++||++|.|++++|++|.+.+.++....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp CSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 77888888899999999999999999999999999999998876554
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=7.3e-24 Score=151.12 Aligned_cols=125 Identities=44% Similarity=0.786 Sum_probs=113.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 64 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 64 VYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp EEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 35678889999999999999999999999999999999999999999999999998887654578999999999997766
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.+..++...++..++++++++||++|.|++++|++|.+.+.++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 777888888999999999999999999999999999999887653
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=8.1e-24 Score=149.29 Aligned_cols=123 Identities=41% Similarity=0.791 Sum_probs=110.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 54 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 54 LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 45678889999999999999999999999999999999999999999999999999887765679999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7788888899999999999999999999999999998877553
No 18
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=147.83 Aligned_cols=126 Identities=30% Similarity=0.404 Sum_probs=105.3
Q ss_pred eeeCCEEEEEEEEeCCCchh--hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~ 78 (165)
+.+++..+.+.+|||+|++. +..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 45 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 45 LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 46788999999999999988 677888899999999999999999999999999988876532 478999999999997
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
....+..++...++..++++++++||++|.|++++|++|.+.+.++...
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173 (175)
T ss_dssp TTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence 7677788888888888899999999999999999999999998876554
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=8e-24 Score=149.83 Aligned_cols=122 Identities=31% Similarity=0.549 Sum_probs=112.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 59 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 59 TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred EEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 46788999999999999999999999999999999999999999999999999998876543 67899999999999877
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~-~~~~i~~l~~~l~~~i~~ 123 (165)
..+..++...++..++++++++||+ ++.|++++|++|.+.+.+
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 7888999999999999999999999 999999999999998865
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.9e-24 Score=148.98 Aligned_cols=123 Identities=47% Similarity=0.829 Sum_probs=103.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus 53 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 53 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp EEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 36788889999999999999999999999999999999999999999999999998887765678999999999998777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+..++...++...+++++++||+++.|++++|++|.+.+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 133 VVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7788888888888999999999999999999999999988653
No 21
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=8.6e-24 Score=152.06 Aligned_cols=123 Identities=27% Similarity=0.404 Sum_probs=110.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++++.. ++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+..
T Consensus 65 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 65 IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp EEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred EEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 46789999999999999998765 888999999999999999999999999999998877653 4789999999999977
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...+..+++..++...+++++++||++|.|++++|++|++.+..+
T Consensus 145 ~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 145 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 677888888889998999999999999999999999999988653
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=5.1e-24 Score=148.80 Aligned_cols=123 Identities=27% Similarity=0.404 Sum_probs=106.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++++.. ++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 44 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 44 IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred EEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 46789999999999999999876 788889999999999999999999999999999887754 4799999999999987
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...+..++...++...+++++++||++|.|++++|+++.+.+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 778889999999999999999999999999999999999988764
No 23
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=1.6e-23 Score=148.57 Aligned_cols=126 Identities=33% Similarity=0.600 Sum_probs=110.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++.+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+. .
T Consensus 45 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~ 123 (189)
T 4dsu_A 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-S 123 (189)
T ss_dssp EEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-S
T ss_pred EEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-c
Confidence 45788999999999999999999999999999999999999999999999999998887654 579999999999996 3
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.....+....++..++++++++||++|.|++++|++|.+.+.+.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM 171 (189)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 456778888899999999999999999999999999999998766543
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=148.54 Aligned_cols=126 Identities=41% Similarity=0.733 Sum_probs=115.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+....
T Consensus 51 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 51 VEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERK 129 (181)
T ss_dssp EEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGC
T ss_pred EEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhc
Confidence 4578888999999999999999999999999999999999999999999999999987765 579999999999998777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
.+...+...++...+++++++||++|.|++++|++|.+.+.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 78888888999999999999999999999999999999998876554
No 25
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.9e-24 Score=154.56 Aligned_cols=125 Identities=44% Similarity=0.774 Sum_probs=113.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+..
T Consensus 65 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 65 VYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp EEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 34566778899999999999999999999999999999999999999999999999987765689999999999997777
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 788888999999999999999999999999999999999987654
No 26
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.92 E-value=6.4e-25 Score=159.26 Aligned_cols=125 Identities=29% Similarity=0.615 Sum_probs=105.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+++.+. .|+..+.... .+.|++||+||+|+...
T Consensus 50 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 50 VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhC
Confidence 457888899999999999999999999999999999999999999999987 7888887765 47899999999998543
Q ss_pred CC--------CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RA--------VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~--------~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.. +...++..++..+++ +++++||++|+|++++|++|.+.+.+....
T Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred ccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 32 367788888888886 899999999999999999999998765433
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=4.1e-24 Score=151.08 Aligned_cols=124 Identities=31% Similarity=0.453 Sum_probs=111.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 47 ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred EEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 46788999999999999999999999999999999999999999999999999998876654 57899999999999877
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
..+..++...++..++++++++||++|.|++++|++|.+.+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred ceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999999887654
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=150.26 Aligned_cols=126 Identities=45% Similarity=0.817 Sum_probs=113.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 146 (193)
T 2oil_A 67 VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146 (193)
T ss_dssp EEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc
Confidence 35677889999999999999999999999999999999999999999999999998877655678999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.+...+...++...+++++++||++|.|++++|++|.+.+.++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192 (193)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 7778888888888999999999999999999999999999876543
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=1.6e-23 Score=147.44 Aligned_cols=126 Identities=34% Similarity=0.586 Sum_probs=112.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus 50 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 50 CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46788889999999999999999999999999999999999999999999999988855443 57899999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+...+...++...+++++++||++|.|++++|++|.+.+.+....
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 77888888888888999999999999999999999999998876543
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=1.5e-23 Score=146.05 Aligned_cols=120 Identities=44% Similarity=0.824 Sum_probs=108.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus 48 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 45678889999999999999999999999999999999999999999999999998887755689999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 128 AVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7778888888888999999999999999999999998754
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=5.9e-24 Score=148.48 Aligned_cols=121 Identities=36% Similarity=0.701 Sum_probs=103.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 48 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 127 (170)
T 1z08_A 48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127 (170)
T ss_dssp EESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 45678888999999999999999999999999999999999999999999999988877654578999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 78888888999999999999999999999999999998875
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=2.8e-23 Score=147.00 Aligned_cols=126 Identities=33% Similarity=0.570 Sum_probs=114.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred EEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45788889999999999999999999999999999999999999999999999998887764 47999999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+...+...++..++++++++||+++.|++++|++|.+.+.+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 185 (187)
T 2a9k_A 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185 (187)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 67788888889999999999999999999999999999999876543
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=1.4e-23 Score=145.91 Aligned_cols=122 Identities=34% Similarity=0.580 Sum_probs=108.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 45 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 45 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp EEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred EEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 45788889999999999999999999999999999999999999999999999998887664 47999999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+..++...++...+++++++||++|.|++++|++|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 6788888888998899999999999999999999999988753
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=150.27 Aligned_cols=123 Identities=47% Similarity=0.816 Sum_probs=110.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 68 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 68 VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp EEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 45788889999999999999999999999999999999999999999999999988877765679999999999997766
Q ss_pred CCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+..++...++... +++++++||++|.|++++|++|.+.+.++
T Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp CSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 77888888888774 78899999999999999999999988653
No 35
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=2.3e-23 Score=149.71 Aligned_cols=125 Identities=26% Similarity=0.513 Sum_probs=110.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 61 VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGC
T ss_pred EEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhc
Confidence 457888899999999999999999999999999999999999999999987 6888887765 4799999999999864
Q ss_pred -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
...+..++...++..+++ +++++||++|.|++++|++|.+.+.+....
T Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred hhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 245677888888888887 899999999999999999999999876554
No 36
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-23 Score=152.46 Aligned_cols=125 Identities=25% Similarity=0.359 Sum_probs=109.1
Q ss_pred eeeCCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++. +..+.+.+++.+|++|+|||+++..+|+.+..|+..+..... .++|++||+||+|+..
T Consensus 80 i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 80 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp EEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred EEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 56889999999999999987 566778889999999999999999999999999887765422 5799999999999976
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.+.+..++...++..++++++++||++|.|++++|++|.+.+..+..
T Consensus 160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHCC
T ss_pred CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 66778888888888889999999999999999999999998866543
No 37
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=1.1e-23 Score=146.91 Aligned_cols=122 Identities=49% Similarity=0.871 Sum_probs=109.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+......+.|+++|+||+|+ ...
T Consensus 45 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~ 123 (170)
T 1g16_A 45 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123 (170)
T ss_dssp EESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTC
T ss_pred EEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcC
Confidence 3467778899999999999999999999999999999999999999999999999888776567899999999999 445
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888888999999999999999999999999988764
No 38
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.2e-24 Score=152.56 Aligned_cols=121 Identities=31% Similarity=0.457 Sum_probs=105.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+..
T Consensus 49 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 49 ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 35678888999999999999999999999999999999999999999999888877766542 3689999999999964
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+...+...++..++++++++||++|.|++++|++|.+.+..
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 129 -REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp -CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred -cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 4567778888888889999999999999999999999886643
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3e-23 Score=144.60 Aligned_cols=120 Identities=43% Similarity=0.813 Sum_probs=108.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR- 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~- 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+...
T Consensus 45 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 45 VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred EEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 4578889999999999999999999999999999999999999999999999999888776567999999999998654
Q ss_pred --CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 --RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+.......++...+++++++||++|.|++++|++|.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 56777888888888999999999999999999999998754
No 40
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=3.1e-23 Score=147.79 Aligned_cols=120 Identities=16% Similarity=0.328 Sum_probs=106.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA-- 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~-- 78 (165)
+.+++..+.+++|||+|++++. +++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (184)
T 3ihw_A 60 IVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA 134 (184)
T ss_dssp EEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTT
T ss_pred EEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 5788999999999999999877 78899999999999999999999999999987654 578999999999994
Q ss_pred CCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 79 HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
....+..+++..++..++ ++++++||++|.|++++|++|.+.+.+++.
T Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 135 NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 456688888999999887 889999999999999999999999887643
No 41
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=8.2e-23 Score=147.86 Aligned_cols=127 Identities=46% Similarity=0.842 Sum_probs=113.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+ ...
T Consensus 62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~ 140 (213)
T 3cph_A 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140 (213)
T ss_dssp EEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSC
T ss_pred EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-ccc
Confidence 4567888999999999999999999999999999999999999999999999999888776557899999999999 445
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 129 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~ 129 (165)
.+...+...++..++++++++||+++.|++++|++|.+.+.++.....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188 (213)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 567778888888889999999999999999999999999988766554
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=2.2e-23 Score=146.73 Aligned_cols=122 Identities=36% Similarity=0.549 Sum_probs=106.4
Q ss_pred eeCC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCe-EEEEeeCCCCC
Q 031132 3 TIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMT-IMLIGNKCDLA 78 (165)
Q Consensus 3 ~i~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p-~ivv~nK~Dl~ 78 (165)
.+++ ..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... .+.| +++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 49 TLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 4554 678999999999999999999999999999999999999999999999988876432 2345 89999999997
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
....+..++...++...+++++++||++|.|++++|++|.+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 129 HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6667788888889988999999999999999999999999887543
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=150.54 Aligned_cols=122 Identities=40% Similarity=0.705 Sum_probs=107.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC---
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA--- 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~--- 78 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.
T Consensus 70 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 149 (199)
T 2p5s_A 70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149 (199)
T ss_dssp EEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHH
T ss_pred EEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 46788899999999999999999999999999999999999999999999999998877655578999999999985
Q ss_pred ---CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 79 ---HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
....+..+....++...+++++++||++|.|++++|++|.+.+.+
T Consensus 150 ~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 345677888888888899999999999999999999999988753
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=4.7e-23 Score=146.57 Aligned_cols=121 Identities=38% Similarity=0.677 Sum_probs=110.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.+|||+|++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 78999999999999999999999999999999999999999999999998887764 57899999999999776677888
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
++..++...+++++++||+++.|++++|++|.+.+.++....
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 888899889999999999999999999999999998866543
No 45
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.91 E-value=1.2e-23 Score=153.27 Aligned_cols=124 Identities=27% Similarity=0.519 Sum_probs=108.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++. +..|+..+.... .+.|++||+||+|+...
T Consensus 68 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 68 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred EEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 4567888999999999999999999999999999999999999999998 688999888775 57999999999999652
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHHHHHh
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~~~~~ 126 (165)
+.+..+++..++..+++ ++++|||++|.| ++++|++|.+.+..+..
T Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred hhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 56888899999999999 899999999998 99999999998876544
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=149.24 Aligned_cols=121 Identities=31% Similarity=0.518 Sum_probs=105.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~ 78 (165)
+.+++..+.+++|||+|++++..+ ..+++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 62 ETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 457889999999999999988775 6799999999999999999999999999998877642 478999999999997
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecC-CCCCCHHHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~~i~~l~~~l~~~i~~ 123 (165)
..+.+..+++..++..++++++++|| ++|.|++++|+.|.+.+.+
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 76778888899999999999999999 8999999999999988753
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=8.8e-23 Score=142.34 Aligned_cols=120 Identities=43% Similarity=0.776 Sum_probs=109.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+........|+++|+||+|+....
T Consensus 48 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 48 VQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 45678889999999999999999999999999999999999999999999999998887655678999999999997766
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.+..++...++...+++++++||++|.|++++|++|.+.+
T Consensus 128 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 7788888888888999999999999999999999998765
No 48
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=3.2e-23 Score=148.35 Aligned_cols=122 Identities=25% Similarity=0.550 Sum_probs=108.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred EEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 46788999999999999999999999999999999999999999999997 66877777654 57899999999999643
Q ss_pred --CCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 81 --RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+..++...++..++++ ++++||++|.|++++|++|.+.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 567888899999999998 99999999999999999999988754
No 49
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=3.2e-23 Score=149.23 Aligned_cols=126 Identities=27% Similarity=0.543 Sum_probs=102.5
Q ss_pred eeeCCE--EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCC
Q 031132 2 ITIDNK--PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCD 76 (165)
Q Consensus 2 ~~i~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D 76 (165)
+.+++. .+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|
T Consensus 64 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 143 (208)
T 2yc2_C 64 VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD 143 (208)
T ss_dssp EECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-
T ss_pred EEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcc
Confidence 345555 78999999999999999999999999999999999999999999999999988764 5789999999999
Q ss_pred CCC-CCCCCHHHHHHHHHHcCCeEEEecCCC-CCCHHHHHHHHHHHHHHHHhc
Q 031132 77 LAH-RRAVSTEEGEQFAKEHGLIFMEASAKT-AQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 77 l~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~-~~~i~~l~~~l~~~i~~~~~~ 127 (165)
+.. ...+..+++..++..++++++++||++ +.|++++|++|.+.+.+....
T Consensus 144 l~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 144 LPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp ------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 976 667888889999999999999999999 999999999999988876543
No 50
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=2.9e-23 Score=145.96 Aligned_cols=121 Identities=45% Similarity=0.794 Sum_probs=109.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus 56 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 56 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 45788889999999999999999999999999999999999999999999999998877655679999999999997767
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+...+...++...+++++++||++|.|++++|++|.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 77888888888889999999999999999999999987653
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=3.1e-23 Score=143.95 Aligned_cols=122 Identities=34% Similarity=0.574 Sum_probs=110.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 44 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 44 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 46788889999999999999999999999999999999999999999999999988877654 57999999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+...+...++...+++++++||++|.|++++|++|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 7778888888888899999999999999999999999987753
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=3.2e-23 Score=144.34 Aligned_cols=121 Identities=37% Similarity=0.642 Sum_probs=109.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+....
T Consensus 47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 47 IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp EEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCccc
Confidence 4567888999999999999999999999999999999999999999999999998887765 578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++...+++++++||+++.|++++|++|.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 777888888999999999999999999999999999988764
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=7.8e-24 Score=152.52 Aligned_cols=126 Identities=29% Similarity=0.505 Sum_probs=107.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 65 VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp EC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred EEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 34567788999999999999999999999999999999999999999999999999876643 57899999999999877
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
..+...+...++...+++++++||++|.|++++|++|.+.+.+....
T Consensus 145 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred cccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 78888889999999999999999999999999999999998775444
No 54
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=1.8e-23 Score=152.07 Aligned_cols=120 Identities=39% Similarity=0.708 Sum_probs=108.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.||||+|++++..++..+++.+|++|||||+++..++..+..|+..+..... .+.|+++|+||+|+.....+...
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 78899999999999999999999999999999999999999999999887765543 57899999999999776677888
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
+...++...+++++++||+++.|++++|++|.+.+.++...
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999999999999886554
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=3.6e-23 Score=143.92 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=108.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 44 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp EESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred EEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 34677788999999999999999999999999999999999999999999999988877643 57999999999999776
Q ss_pred CCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+..++...++..+ +++++++||++|.|++++|++|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 777888888888887 789999999999999999999988763
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.1e-23 Score=149.32 Aligned_cols=122 Identities=40% Similarity=0.736 Sum_probs=109.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 65 VPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp EECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 34566788999999999999999999999999999999999999999999999999887755679999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+..++...++...+++++++||+++.|++++|++|.+.+.+
T Consensus 145 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 778888999999999999999999999999999999887644
No 57
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=1.4e-23 Score=149.78 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=105.9
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT------RRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+++..+.+++|||+|++++..+++.+++++|++|+|||++ +..++..+..|+..+... ..+.|+++|+||+|
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~D 146 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRD 146 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTT
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchh
Confidence 56788899999999999999999999999999999999999 556777787787776322 25799999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 77 LAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
+.. .+..+++..++...++ +++++||++|.|++++|++|.+.+.++..+
T Consensus 147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 965 3678888888888999 899999999999999999999999887654
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.8e-23 Score=146.16 Aligned_cols=122 Identities=48% Similarity=0.825 Sum_probs=109.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .
T Consensus 57 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~ 135 (195)
T 1x3s_A 57 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 135 (195)
T ss_dssp EEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-S
T ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-c
Confidence 45788889999999999999999999999999999999999999999999999988876643 578999999999994 4
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+...+...++...+++++++||+++.|++++|++|.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 45677888888989999999999999999999999999998754
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.5e-23 Score=147.04 Aligned_cols=123 Identities=38% Similarity=0.549 Sum_probs=111.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++. ..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 69 ATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp EEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred EEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 46788899999999999998 78899999999999999999999999999999988877653 57899999999999776
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~~~~ 125 (165)
..+..++...++..++++++++||++|. |++++|++|.+.+.++.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 148 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp CCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 7788888888998899999999999999 99999999999988754
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=8.1e-23 Score=144.02 Aligned_cols=122 Identities=14% Similarity=0.276 Sum_probs=104.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~ 78 (165)
+.+++..+.+++|||+|+++ ..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 47 ~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 47 MLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 56788999999999999987 4678899999999999999999999998766655432 478999999999994
Q ss_pred --CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132 79 --HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128 (165)
Q Consensus 79 --~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~ 128 (165)
..+.+..+++..++... +++++++||++|.|++++|++|.+.+.+....+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence 44567888888888776 688999999999999999999999998866543
No 61
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=6.4e-23 Score=146.21 Aligned_cols=121 Identities=40% Similarity=0.758 Sum_probs=107.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++++. .++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 62 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp EEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred EEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4578888999999999999998 8999999999999999999999999999999999887753 6799999999999977
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCC---CCHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEEAFIKTAATIY 122 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~~i~~l~~~l~~~i~ 122 (165)
...+..++...++...+++++++||+++ +|++++|++|.+.+.
T Consensus 142 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 6677888888899999999999999999 999999999988764
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=8.2e-23 Score=146.11 Aligned_cols=120 Identities=27% Similarity=0.522 Sum_probs=106.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 59 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred EEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 456778899999999999999999999999999999999999999999987 7888887765 47899999999999653
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+.+..++...++..+++ +++++||++|+|++++|++|.+.++
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 35777888889988887 8999999999999999999998875
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=1.7e-22 Score=141.98 Aligned_cols=121 Identities=34% Similarity=0.662 Sum_probs=107.5
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL 77 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl 77 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+
T Consensus 49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 49 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp EEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred EEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 45788889999999999999999999999999999999999999999999999988876653 57899999999999
Q ss_pred CCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
. ...+..++...++. ..+++++++||++|.|++++|++|.+.+.+
T Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 129 S-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp S-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred c-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6 45577788888877 567889999999999999999999998865
No 64
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=4.3e-22 Score=141.79 Aligned_cols=124 Identities=35% Similarity=0.592 Sum_probs=99.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~- 140 (190)
T 3con_A 62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT- 140 (190)
T ss_dssp EEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred EEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-
Confidence 45788889999999999999999999999999999999999999999999999988877654 4789999999999865
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.....++...++...+++++++||+++.|++++|++|.+.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567788888898999999999999999999999999999876544
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=6e-23 Score=145.28 Aligned_cols=121 Identities=28% Similarity=0.578 Sum_probs=106.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..+++++|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 46 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccccc
Confidence 467889999999999999999999999999999999999999999999987 6888887665 47899999999998543
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+..++...++...+. +++++||++|.|++++|++|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred chhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 45677788888888887 89999999999999999999988753
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.89 E-value=3.4e-22 Score=144.01 Aligned_cols=120 Identities=30% Similarity=0.565 Sum_probs=106.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 66 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence 45788899999999999999999999999999999999999999999988 56777776654 57899999999999654
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+..++...++...+. +++++||++|.|++++|++|.+.++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 45677788888888888 7999999999999999999998775
No 67
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.89 E-value=5.2e-22 Score=141.99 Aligned_cols=115 Identities=39% Similarity=0.710 Sum_probs=104.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+.+.+|||+|++.+...+..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+| .....+..+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHH
Confidence 789999999999999999999999999999999999999999999999888774 489999999999 45566788889
Q ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 89 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 89 ~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
..++...+++++++||+++.|++++|++|.+.+.++..
T Consensus 170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887643
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=147.74 Aligned_cols=122 Identities=28% Similarity=0.612 Sum_probs=93.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 75 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred EEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 467889999999999999999999999999999999999999999999987 6888887665 57899999999999653
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+..+++..++...++ +++++||++|.|++++|++|.+.+++.
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 25677788888888887 899999999999999999999988764
No 69
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.89 E-value=7.2e-23 Score=145.46 Aligned_cols=121 Identities=27% Similarity=0.552 Sum_probs=106.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 48 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 48 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred EEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcc
Confidence 35678889999999999999999999999999999999999999999988 67888887664 57899999999999642
Q ss_pred ------------CCCCHHHHHHHHHHcC-CeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHG-LIFMEASAK-TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~l~~~l~~~i~~ 123 (165)
..+..+++..++..++ .+++++||+ ++.|++++|+.+.+.+++
T Consensus 127 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 4577888888888887 689999999 689999999999998764
No 70
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.89 E-value=3.7e-22 Score=143.16 Aligned_cols=125 Identities=25% Similarity=0.370 Sum_probs=106.7
Q ss_pred eeeCCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|+.. ++.++..+++.+|++++|||+++..+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus 49 ~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 49 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred EEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 56789999999999999887 566788889999999999999999999999999887766532 5789999999999976
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
.+.+...+...++...+++++++||++|.|++++|+++.+.+..+..
T Consensus 129 ~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~ 175 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD 175 (192)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence 66677777888888889999999999999999999999999876553
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=6.6e-22 Score=136.92 Aligned_cols=120 Identities=33% Similarity=0.593 Sum_probs=107.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++++||+|+..
T Consensus 44 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~- 122 (166)
T 2ce2_X 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA- 122 (166)
T ss_dssp EEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred EEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-
Confidence 45778889999999999999999999999999999999999999999999999988877653 4799999999999865
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..........++..++++++++||+++.|++++|++|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 456677888888889999999999999999999999998875
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.89 E-value=2.5e-22 Score=141.43 Aligned_cols=120 Identities=36% Similarity=0.629 Sum_probs=95.3
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC-C
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAH-R 80 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~-~ 80 (165)
+..+.+.+|||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.. .
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 134 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence 5567899999999999999999999999999999999999999999999988876653 5789999999999953 3
Q ss_pred CCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
..+...+...++. ..+.+++++||++|.|++++|++|.+.+.++.
T Consensus 135 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 4567777888877 45788999999999999999999999988754
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.4e-22 Score=144.65 Aligned_cols=122 Identities=28% Similarity=0.555 Sum_probs=106.8
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 45788889999999999999999999999999999999999999999988 56877776654 57899999999999643
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+...+...++...+. +++++||++|.|++++|++|.+.++++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 34677778888888887 799999999999999999999988754
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.89 E-value=1.2e-22 Score=147.18 Aligned_cols=121 Identities=27% Similarity=0.557 Sum_probs=106.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~- 79 (165)
+.+++..+.+.+|||+|+++|..++..+++++|++|+|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 69 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 69 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp EESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred EEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccc
Confidence 35677889999999999999999999999999999999999999999998 67888887665 5789999999999964
Q ss_pred -----------CCCCCHHHHHHHHHHcC-CeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132 80 -----------RRAVSTEEGEQFAKEHG-LIFMEASAK-TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~l~~~l~~~i~~ 123 (165)
...+..+++..++..++ ++++++||+ ++.|++++|+.|.+.+++
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 24577788888888887 689999999 689999999999998875
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=5e-23 Score=145.32 Aligned_cols=120 Identities=27% Similarity=0.602 Sum_probs=98.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcC
Confidence 346778888999999999999999999999999999999999999999987 6888887765 47899999999998543
Q ss_pred CC----------CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 RA----------VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~~----------~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.. +...+...++..++. +++++||++|.|++++|++|.+.++
T Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 32 467778888888886 8999999999999999999998764
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.5e-22 Score=140.12 Aligned_cols=120 Identities=34% Similarity=0.483 Sum_probs=106.1
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 79 (165)
+.+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+..
T Consensus 44 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 44 ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 35678888999999999999999999999999999999999999999999998888776542 4689999999999977
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...+...+...++...+++++++||++|.|++++|++|.+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 667777888888888899999999999999999999998754
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.88 E-value=3.5e-22 Score=145.32 Aligned_cols=122 Identities=32% Similarity=0.507 Sum_probs=106.5
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+..+.+.+|||+|++.+..++..++.++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.....+..
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 44478999999999999999999999999999999999999999999999999877656689999999999977667788
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.....++...+++++++||++|.|++++|++|.+.+..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 888888888899999999999999999999999988765443
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=4.4e-24 Score=153.64 Aligned_cols=122 Identities=51% Similarity=0.891 Sum_probs=99.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 75 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp EEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred EEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 46788889999999999999999999999999999999999999999999999999877655679999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.+...+...++..++++++++||++|.|++++|++|.+.+.+
T Consensus 155 ~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred cCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 666666777888889999999999999999999999876643
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=2.6e-22 Score=145.09 Aligned_cols=119 Identities=28% Similarity=0.582 Sum_probs=103.4
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence 467788899999999999999999999999999999999999999999987 6888877765 57999999999998643
Q ss_pred C------------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 R------------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~------------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
. .+...+...++...+. +++++||++|+|++++|++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2 2677788888888886 499999999999999999998754
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=8.5e-23 Score=141.89 Aligned_cols=119 Identities=19% Similarity=0.356 Sum_probs=94.0
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
++...+.+.+|||+|+++++.++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+...
T Consensus 39 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 116 (164)
T 1r8s_A 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA-- 116 (164)
T ss_dssp EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--
T ss_pred EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--
Confidence 444557899999999999999999999999999999999999999999999888765432 57899999999999643
Q ss_pred CCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
....+..... ...+++++++||++|.|++++|++|.+.+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 2333332211 11345799999999999999999999887643
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=2.4e-22 Score=143.82 Aligned_cols=122 Identities=16% Similarity=0.334 Sum_probs=98.3
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--------CCCeEEEEeeCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--------ANMTIMLIGNKC 75 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~ 75 (165)
+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+
T Consensus 58 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~ 137 (199)
T 4bas_A 58 FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKM 137 (199)
T ss_dssp EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECT
T ss_pred EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECc
Confidence 345567899999999999999999999999999999999999999999999888765521 278999999999
Q ss_pred CCCCCCCCCHHHHHH-H-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 76 DLAHRRAVSTEEGEQ-F-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~-~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
|+.... ...+... + +...+++++++||++|.|++++|++|.+.+.++...
T Consensus 138 Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 138 DAAGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp TSTTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 996542 2222221 1 134577899999999999999999999998876543
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=1.1e-21 Score=141.32 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=93.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++ +.+.+|||+|+++++.++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+..
T Consensus 64 ~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~- 140 (198)
T 1f6b_A 64 LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE- 140 (198)
T ss_dssp EEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-
T ss_pred EEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-
Confidence 34555 6799999999999999999999999999999999999999999999988876532 5799999999999964
Q ss_pred CCCCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKE-----------------HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~-----------------~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.++.+++..++.. .+++++++||++|+|++++|++|.+.
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 141 -AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp -CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred -cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566666665542 24569999999999999999998754
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=9.8e-22 Score=143.44 Aligned_cols=121 Identities=31% Similarity=0.601 Sum_probs=105.7
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+..
T Consensus 57 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 57 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS
T ss_pred EEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc
Confidence 4567889999999999999999999999999999999999999999999999999998775 578999999999996543
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
. . .+...++...+++++++||++|.|++++|++|.+.+....
T Consensus 136 ~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 136 V-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp S-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred c-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 2 2 2445567778999999999999999999999999887643
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=2.3e-21 Score=138.61 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=95.9
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++ +.+.+|||+|+++++.++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+..
T Consensus 62 ~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~- 138 (190)
T 1m2o_B 62 LAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN- 138 (190)
T ss_dssp EEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-
T ss_pred EEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-
Confidence 34555 6789999999999999999999999999999999999999999999988876432 5789999999999965
Q ss_pred CCCCHHHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 81 ~~~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.+..++....+.. .+++++++||++|+|++++|++|.+.
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 139 -AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp -CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred -CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 4556666554432 34579999999999999999998754
No 85
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=1.1e-20 Score=145.07 Aligned_cols=121 Identities=28% Similarity=0.571 Sum_probs=107.3
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...
T Consensus 196 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccc
Confidence 467889999999999999999999999999999999999999999999887 6877777665 47999999999998542
Q ss_pred ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+...+...++...++ +++++||++|.|++++|+.|.+.+++
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 45778888889999987 89999999999999999999988764
No 86
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=6.8e-20 Score=131.71 Aligned_cols=130 Identities=51% Similarity=0.859 Sum_probs=114.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.++|..+.+.+|||+|+++++.++..+++.++++++|||+++..+++.+..|+..+......+.|+++++||+|+....
T Consensus 47 i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 126 (199)
T 2f9l_A 47 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126 (199)
T ss_dssp EEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 56889999999999999999999999999999999999999999999988888887766543578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 131 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~ 131 (165)
.+...++..++...++.++++||+++.|++++|+.|.+.+.+....+...
T Consensus 127 ~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~ 176 (199)
T 2f9l_A 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 176 (199)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 67778888889889999999999999999999999999998876555443
No 87
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=7.7e-21 Score=134.85 Aligned_cols=115 Identities=22% Similarity=0.333 Sum_probs=91.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+++|||+|++.++..+..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.... ..+
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~ 136 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PAS 136 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHH
Confidence 46789999999999999999999999999999999999999999998887754422 578999999999996533 233
Q ss_pred HHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 87 EGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 87 ~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+..... ...+++++++||++|+|++++|++|.+.+.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 332221 12245799999999999999999999877543
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=3.3e-22 Score=143.29 Aligned_cols=114 Identities=19% Similarity=0.338 Sum_probs=87.6
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+... ...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 148 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPV 148 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCH
Confidence 446799999999999999999999999999999999999999999999988765432 57999999999999643 233
Q ss_pred HHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 86 EEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 86 ~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+..... ...+++++++||++|.|++++|++|.+.+.
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 3322211 123457999999999999999999988764
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=1.8e-21 Score=135.93 Aligned_cols=114 Identities=22% Similarity=0.326 Sum_probs=93.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.... ...
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 127 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSS 127 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHH
Confidence 46789999999999999999999999999999999999999999998888765532 578999999999996532 223
Q ss_pred HHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 87 EGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 87 ~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+.... +...+++++++||++|.|++++|++|.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 32222 22235679999999999999999999988754
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.4e-20 Score=131.80 Aligned_cols=114 Identities=24% Similarity=0.349 Sum_probs=90.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.. ....++
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~ 137 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAE 137 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHH
Confidence 6789999999999999999999999999999999999999999999988876532 5799999999999964 234444
Q ss_pred HHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 88 GEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 88 ~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...... ..+++++++||++|.|++++|++|.+.+...
T Consensus 138 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 443322 2356899999999999999999999876443
No 91
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=9.3e-22 Score=153.39 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=100.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D 76 (165)
.+.+++|||+|++.++.+|..++++++++|||||+++ ..++.+...|+..+..... .+.|++|++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5779999999999999999999999999999999999 4678888889888876532 6799999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 77 LAHRR---------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 77 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
+..+. .++.+++..++. ..++.+++|||+++.|+.++|+++.+.+++...
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 84221 356777777766 346779999999999999999999999987544
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=132.48 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=94.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCCCCH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.. ....
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~ 144 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTS 144 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCH
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCH
Confidence 6789999999999999999999999999999999999999999999988876543 3789999999999964 3345
Q ss_pred HHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 86 EEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 86 ~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
++...++. ..+++++++||++|.|++++|++|.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 145 VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 55555442 235679999999999999999999887643
No 93
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.1e-22 Score=146.63 Aligned_cols=120 Identities=28% Similarity=0.589 Sum_probs=101.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+++..+.+++|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
Confidence 456778888999999999999999999999999999999999999999887 6777776554 37899999999999643
Q ss_pred C------------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 81 R------------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 81 ~------------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
. .+...+...++...++ +++++||++|.|++++|++|.+.++
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 2 3445566677777787 8999999999999999999987653
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=3.3e-20 Score=131.53 Aligned_cols=115 Identities=25% Similarity=0.333 Sum_probs=94.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+++|||+|++++...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.... ...
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 138 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCN 138 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHH
Confidence 36789999999999999999999999999999999999999999999888766532 579999999999996532 333
Q ss_pred HHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 87 EGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 87 ~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+...... ..+++++++||++|.|++++|++|.+.+.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 139 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 3333221 2356799999999999999999999887653
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=3e-21 Score=138.49 Aligned_cols=114 Identities=24% Similarity=0.343 Sum_probs=92.7
Q ss_pred CEEEEEEEEeCCCchhhhhhh---HhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~---~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+..+.+++|||+|+++|..+. ..+++++|++|+|||+++. .++..+..|+..+.... .+.|+++|+||+|+...
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCch
Confidence 566789999999999987765 8999999999999999997 67777777777765443 57999999999998542
Q ss_pred -------CCCCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 -------RAVSTEEGEQFAK----EHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 -------~~~~~~~~~~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+.+.......++. ..+++++++||++ .|++++|+.+++.+
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2333444556666 5678899999999 99999999998865
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=2.3e-20 Score=132.13 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=91.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+.... ..+.|+++|+||+|+... ....+
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~ 142 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAE 142 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHH
Confidence 679999999999999999999999999999999999999999999988887643 257999999999999542 33444
Q ss_pred HHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 88 GEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 88 ~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+..... ..+++++++||++|.|++++|++|.+.
T Consensus 143 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 443321 235579999999999999999998764
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=1.5e-20 Score=134.00 Aligned_cols=117 Identities=19% Similarity=0.346 Sum_probs=93.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+... ..
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 141 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LD 141 (188)
T ss_dssp ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CC
Confidence 3456789999999999999999999999999999999999999999999988765432 57999999999999643 23
Q ss_pred HHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..+...... ..+++++++||++|.|++++|++|.+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 333222111 2345799999999999999999998876543
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=1.1e-21 Score=139.56 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=93.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.... ...
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 142 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEA 142 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHH
Confidence 46789999999999999999999999999999999999999999988888765432 578999999999996532 223
Q ss_pred HHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 87 EGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 87 ~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+..... ...+++++++||+++.|++++|++|.+.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 322211 12345799999999999999999999988653
No 99
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=6.1e-21 Score=148.80 Aligned_cols=121 Identities=16% Similarity=0.233 Sum_probs=95.5
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC 75 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 75 (165)
+.+.+++|||+|+++++.+|..++++++++|||||++ +..++++...|+..+..... .+.|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6899999999999999999999999999999999998 77889999999988876532 679999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHH
Q 031132 76 DLAHRRA--V-------------------STEEGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 76 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
|+..++. + +.+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 13445555332 123468999999999999999999
Q ss_pred HHHHHHHhc
Q 031132 119 ATIYKKIQD 127 (165)
Q Consensus 119 ~~i~~~~~~ 127 (165)
+.|++....
T Consensus 341 ~~I~~~~l~ 349 (354)
T 2xtz_A 341 ETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=7.8e-20 Score=129.07 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=91.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+.+.+|||+|++++...+..+++++|++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+... ....+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 139 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASE 139 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHH
Confidence 678999999999999999999999999999999999999999999988887653 257899999999999643 33444
Q ss_pred HHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 88 GEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 88 ~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
....... .+++++++||++|+|++++|++|.+.+.+++
T Consensus 140 i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 140 VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 4333221 2357999999999999999999999887653
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=6e-21 Score=135.66 Aligned_cols=118 Identities=18% Similarity=0.370 Sum_probs=93.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+..+.+.+|||+|+++|..+++.++++++++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.....+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHH
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhH
Confidence 4677899999999999999999999999999999999997 57899999999887654 478999999999986433221
Q ss_pred ---HHHHHHHHHHcCCe----EEEecCCCCC-CHHHHHHHHHHHHHHH
Q 031132 85 ---TEEGEQFAKEHGLI----FMEASAKTAQ-NVEEAFIKTAATIYKK 124 (165)
Q Consensus 85 ---~~~~~~~~~~~~~~----~~~vSa~~~~-~i~~l~~~l~~~i~~~ 124 (165)
......++..++++ ++++||+++. +++++++.|.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 12234445556776 9999999997 8999998888776553
No 102
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=5.4e-21 Score=147.45 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=100.3
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIG 72 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~ 72 (165)
++.+.+.+++|||+|+++++.+|.+|+++++++|||||++ +..++.+...|+..+..... .+.|++|++
T Consensus 162 ~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~ 241 (327)
T 3ohm_A 162 FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 241 (327)
T ss_dssp EEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEE
Confidence 3344578999999999999999999999999999999654 66778888888888765543 679999999
Q ss_pred eCCCCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 73 NKCDLAHRR----------------AVSTEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 73 nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
||+|+..++ ..+.+++..++. ..++.+++|||+++.||+.+|..+.+.|++...
T Consensus 242 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 242 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp ECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 999985322 356677776633 345678999999999999999999999987654
Q ss_pred c
Q 031132 127 D 127 (165)
Q Consensus 127 ~ 127 (165)
.
T Consensus 322 ~ 322 (327)
T 3ohm_A 322 K 322 (327)
T ss_dssp C
T ss_pred H
Confidence 3
No 103
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.82 E-value=1.5e-20 Score=147.04 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=92.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D 76 (165)
.+.+++|||+|++.++.+|..++++++++|||||+++ ..++.+...|+..+..... .+.|++|++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 5789999999999999999999999999999999999 6789999999988876532 6799999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 77 LAHRR----------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 77 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
+..+. ..+.+++..++. ..++.+++|||+++.|++++|+++.+.|++....
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 85321 255666666551 3457799999999999999999999999876654
No 104
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=4.9e-20 Score=145.50 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=96.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHA-NANMTIMLIGNKCD 76 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 76 (165)
.+.+++|||+|+++++.+|..|+++++++|||||+++ ..++.+...|+..+.... ..+.|++||+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3789999999999999999999999999999999999 889999999999887653 26789999999999
Q ss_pred CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEecCCCCCCHHHH
Q 031132 77 LAHRRA---V---------------------------STEEGEQFA-----KE--------HGLIFMEASAKTAQNVEEA 113 (165)
Q Consensus 77 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~vSa~~~~~i~~l 113 (165)
|...+. . ..+++..++ .. ..+.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 843211 1 123444442 21 2456889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 031132 114 FIKTAATIYKKIQ 126 (165)
Q Consensus 114 ~~~l~~~i~~~~~ 126 (165)
|.++.+.|++...
T Consensus 376 F~~v~~~I~~~~l 388 (402)
T 1azs_C 376 FNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=139.80 Aligned_cols=117 Identities=25% Similarity=0.347 Sum_probs=91.6
Q ss_pred eCCEEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEE
Q 031132 4 IDNKPIKLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLV 39 (165)
Q Consensus 4 i~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~vi~v 39 (165)
+++..+.+++|| ++|+++|..++..+++ ++|++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 678899999999 7788888888888887 79999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHH
Q 031132 40 YDITRR--ETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 40 ~D~~~~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~ 115 (165)
||++++ .+++.+..|+..+... ...++|++||+||+|+.....+ ++...++.. .+++++++||++|.|++++|+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 999998 8999999999988765 2257999999999999643333 456666665 478999999999999999999
Q ss_pred HHHHHHH
Q 031132 116 KTAATIY 122 (165)
Q Consensus 116 ~l~~~i~ 122 (165)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988763
No 106
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.80 E-value=1.4e-18 Score=124.23 Aligned_cols=120 Identities=53% Similarity=0.898 Sum_probs=106.6
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+++..+.+++||++|++++..++..+++.++++++|||.++..+++.+..|+..+........|+++++||+|+....
T Consensus 71 i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 71 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 56789999999999999999999999999999999999999999999888888887765544578999999999997666
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
......++.++...++.++++||+++.|++++|+.|.+.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6777888889999999999999999999999999998765
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=1.5e-20 Score=144.67 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=86.5
Q ss_pred EEEEEEEeCCCchhhhh---hhHhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC--
Q 031132 8 PIKLQIWDTAGQESFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-- 80 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-- 80 (165)
.+.+++|||+||++|+. .++.|+++++++|+|||+++. .....+..|+..+.... +++|+++++||+|+..+
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHH
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhh
Confidence 36899999999999964 468999999999999999997 33333444454444433 57999999999999643
Q ss_pred -----CCCCHHHHHHHHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 -----RAVSTEEGEQFAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 -----~~~~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+.+..++...++.. .++++++|||++ .|+.++|..+++.+++
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 22444445555554 578899999998 5999999999887654
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=8.7e-20 Score=141.18 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=90.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
+++..+.++||||+|++.+..++..+++.+|++|+|||+++..++..+..|+..+..... .++|++||+||+|+....
T Consensus 204 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~- 282 (329)
T 3o47_A 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM- 282 (329)
T ss_dssp EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-
T ss_pred EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-
Confidence 344456799999999999999999999999999999999999999999988887765543 579999999999996533
Q ss_pred CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
...+...... ..+++++++||++|.|++++|++|.+.+.+
T Consensus 283 -~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 283 -NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp -CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 3333322221 124569999999999999999999988754
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=5.9e-20 Score=148.96 Aligned_cols=121 Identities=21% Similarity=0.388 Sum_probs=95.2
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~ 82 (165)
++++.+.+.||||+|++.++.++..+++++|++|+|||+++..++..+..|+..+..... .++|++||+||+|+...
T Consensus 361 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-- 438 (497)
T 3lvq_E 361 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-- 438 (497)
T ss_dssp EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--
T ss_pred EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--
Confidence 445557899999999999999999999999999999999999999999999988866543 57999999999999643
Q ss_pred CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
....+...... ..+++++++||++|+|++++|++|.+.+.++..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 23333322211 123469999999999999999999987755433
No 110
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=1.3e-19 Score=140.27 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=97.4
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIG 72 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~ 72 (165)
++.+.+.+++|||+|+++++.+|..|+++++++|||||++ +..++.+...|+..+..... .+.|++|++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 4445678999999999999999999999999999999998 67889999899888876543 679999999
Q ss_pred eCCCCCCC---------------CCCCHHHHHHHHHH-c--------------------------CCeEEEecCCCCCCH
Q 031132 73 NKCDLAHR---------------RAVSTEEGEQFAKE-H--------------------------GLIFMEASAKTAQNV 110 (165)
Q Consensus 73 nK~Dl~~~---------------~~~~~~~~~~~~~~-~--------------------------~~~~~~vSa~~~~~i 110 (165)
||+|+..+ ...+.+++..++.. + .+.++++||+++.|+
T Consensus 236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 99998431 11234454443322 2 366899999999999
Q ss_pred HHHHHHHHHHHHH
Q 031132 111 EEAFIKTAATIYK 123 (165)
Q Consensus 111 ~~l~~~l~~~i~~ 123 (165)
+.+|..+.+.|++
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=1.8e-18 Score=125.34 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.+.+++|||+|++++.. ++..+++++|++|+|||+++.. ++.....++..+... ...+.|+++|+||+|+.....
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 57899999999999988 8999999999999999999853 466666655444322 124689999999999965432
Q ss_pred CCH--HHHHHHHH---------------------------------Hc--CCeEEEecCCCC------CCHHHHHHHHHH
Q 031132 83 VST--EEGEQFAK---------------------------------EH--GLIFMEASAKTA------QNVEEAFIKTAA 119 (165)
Q Consensus 83 ~~~--~~~~~~~~---------------------------------~~--~~~~~~vSa~~~------~~i~~l~~~l~~ 119 (165)
... ........ .+ ++++++|||++| .|++++|++|.+
T Consensus 133 ~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 133 AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 111 01111111 11 567999999999 999999999987
Q ss_pred H
Q 031132 120 T 120 (165)
Q Consensus 120 ~ 120 (165)
.
T Consensus 213 ~ 213 (214)
T 2fh5_B 213 I 213 (214)
T ss_dssp H
T ss_pred h
Confidence 5
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=1e-18 Score=133.96 Aligned_cols=114 Identities=18% Similarity=0.367 Sum_probs=93.2
Q ss_pred EEEEEEEeCCCchhh-----hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCC-
Q 031132 8 PIKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH- 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~-----~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~- 79 (165)
.+.+.+|||+|++++ ..++..+++++|++|+|||+++..+++.+..|...+.... ..++|+++|+||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 567999999999988 7889999999999999999999999998877755554332 25799999999999965
Q ss_pred -CCC----CCHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 80 -RRA----VSTEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 80 -~~~----~~~~~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+. +...++..++..+| ++++++||++ .|+.++|..++..++
T Consensus 131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 222 44466777888887 6899999999 899999998887543
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=1.5e-17 Score=121.88 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=87.1
Q ss_pred EEEEEEeCCCc------hhh---hhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQ------ESF---RSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~------~~~---~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
+.+.+|||+|+ ++. ...+..++..+|++|+|||+++..++. ....|+..+.... .+.|+++|+||+|+
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl 154 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDK 154 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCccc
Confidence 57899999999 331 122345678999999999999987764 2334555554332 37899999999999
Q ss_pred CCCCCCCHH---HHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 78 AHRRAVSTE---EGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 78 ~~~~~~~~~---~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.....+... ....++...+ ++++++||++|.|++++|++|.+.+.+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 766556554 3455566666 7899999999999999999999999876544
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=5.9e-18 Score=118.12 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=82.1
Q ss_pred EEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||+|+.++. .+...++. ++|++++|+|+++.. ....|+..+.. .+.|+++|+||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKS 123 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccc
Confidence 468999999998764 45566765 899999999999854 33446655544 36899999999998543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
..+.. +...++..++++++++||++|.|++++|++|.+.+
T Consensus 124 ~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 124 LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33332 35667777889999999999999999999998764
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=2.6e-17 Score=115.43 Aligned_cols=113 Identities=24% Similarity=0.260 Sum_probs=83.4
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.+++. .+.+|||+|++++..++..++..+|++++|||+++. .+++.+ ..+ ...+.|+++|+||+|+..
T Consensus 51 ~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 51 TVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSC
T ss_pred EeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCc
Confidence 45554 467999999999999999999999999999999884 333322 222 224689999999999964
Q ss_pred CCCCCHHHHHHHHHHc-------C--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132 80 RRAVSTEEGEQFAKEH-------G--LIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~-------~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~ 127 (165)
. ............ + ++++++||++|.|++++|++|.+.+...+.+
T Consensus 122 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 122 A---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp S---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred C---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 2 233333322222 1 4799999999999999999999987765444
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=2.6e-17 Score=116.60 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=84.6
Q ss_pred EEEEEeCCC-----------chhhhhhhHhhhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHH-hcCCCCe
Q 031132 10 KLQIWDTAG-----------QESFRSITRSYYRG-AAGALLVYDITRRETFNHL-ASWLED--------ARQ-HANANMT 67 (165)
Q Consensus 10 ~~~l~Dt~G-----------~~~~~~~~~~~~~~-ad~vi~v~D~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p 67 (165)
.+.+|||+| ++.+..++..+++. +++++++|++.+..++..+ ..|... +.. ....+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 478999999 77888888888887 7776666666666667665 445432 211 1125789
Q ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe-------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-------FMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 68 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
+++|+||+|+.... ......++..++.+ ++++||++|+|++++|++|.+.+.+..
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99999999986533 55667777777764 799999999999999999999886643
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=2e-17 Score=126.52 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=86.1
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
.+++||| +++++.+++.+++++|++|+|||++++. +++.+..|+..+.. .++|++||+||+||.+...+ ++.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~ 136 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV 136 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence 5789999 9999999999999999999999999987 78888899887654 36899999999999643322 345
Q ss_pred HHHHHHcC--CeEEEecCCCCCCHHHHHHHHH
Q 031132 89 EQFAKEHG--LIFMEASAKTAQNVEEAFIKTA 118 (165)
Q Consensus 89 ~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~ 118 (165)
..++..++ ++++++||++|.|++++|..+.
T Consensus 137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 56666666 8999999999999999998774
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.70 E-value=1.4e-17 Score=136.30 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=94.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 85 (165)
+..+.+.+|||+|++.+..++..+++.+|++|+|||+++. +.+..|+..+.... .+.|+++|+||+|+.....+..
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCH
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCH
Confidence 3467899999999999999999999999999999999865 55667788777665 4689999999999977677778
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+....++...+.+++++||++|.|++++++.|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 88888888889999999999999999999999887755
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=2.8e-17 Score=113.33 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=76.6
Q ss_pred EEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 10 KLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 10 ~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.+.+|||+|+.. +...+..+++.+|++++|+|+++..+.. ..++...... .+.|+++|+||+|+....
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~- 124 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE- 124 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG-
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch-
Confidence 578999999887 4567778899999999999999853332 1222222222 368999999999996432
Q ss_pred CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
++...++ ..++ +++++||++|.|++++|++|.+.+
T Consensus 125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 2223334 5677 799999999999999999998753
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=1.1e-16 Score=113.94 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=79.7
Q ss_pred EEEEEeCCC----------chhhhhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 10 KLQIWDTAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G----------~~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+|||+| ++.+..++..+++.+ |++++|+|+++..++.... ++..+.. .+.|+++|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D 145 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD 145 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence 478999999 788888899998887 9999999999876665432 1222222 4689999999999
Q ss_pred CCCCCCCCH--HHHHH-HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 77 LAHRRAVST--EEGEQ-FAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 77 l~~~~~~~~--~~~~~-~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+.....+.. .+... +....+.+++++||++|.|++++|++|.+.+
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 965443321 12222 2222357899999999999999999998765
No 121
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=1.3e-17 Score=117.34 Aligned_cols=110 Identities=22% Similarity=0.245 Sum_probs=79.7
Q ss_pred eeCCEEEEEEEEeCCCchhhhh------h--hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRS------I--TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~------~--~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+++. .+.+|||+|++++.. + ...+++.+|++++|||+++..+++ ...|+..+......++|+++|+||
T Consensus 48 ~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK 124 (172)
T 2gj8_A 48 HIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNK 124 (172)
T ss_dssp EETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEEC
T ss_pred EECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEEC
Confidence 45554 478999999864311 1 124689999999999999987765 346777666554357899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+|+.+... .++...+.+++++||++|.|++++|++|.+.+.
T Consensus 125 ~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 125 ADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99853211 011123568999999999999999999987653
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=7.8e-17 Score=114.13 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=84.8
Q ss_pred EEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
..+.+|||+|++.+. .++..++. .+|++++|+|.++ ++....|+..+.. .+.|+++++||+|+...
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS 127 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence 568999999998764 45677775 4999999999876 4555666666554 36899999999998544
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..+. .....++..++++++++||+++.|++++|+++.+.+..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3333 34566777789999999999999999999999887754
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.67 E-value=3.6e-16 Score=119.84 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=88.9
Q ss_pred EEEEEEEeCCCchh----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 8 PIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+.||||||+.. +...+..+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccC
Confidence 46789999999854 346677889999999999999998877777666666554 36899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.............+...++ .+++++||++|.|++++|+.|.+.+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6334444556666677765 6799999999999999999988766
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=6.2e-16 Score=109.73 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=79.7
Q ss_pred EEEEEeCCC----------chhhhhhhHhhhcCC---cEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 10 KLQIWDTAG----------QESFRSITRSYYRGA---AGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 10 ~~~l~Dt~G----------~~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+.+|||+| ++.+..++..+++.+ |++++|+|+++..+. ..+..|+.. .+.|+++|+||
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEEC
T ss_pred cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEC
Confidence 477999999 777888888888877 999999999875333 333334332 36899999999
Q ss_pred CCCCCCCC--CCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 75 CDLAHRRA--VSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 75 ~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+|+..... ...+....++... .++++++||++|.|++++|++|.+.+.
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 99864332 2223444455543 468999999999999999999998764
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.64 E-value=1.9e-16 Score=119.43 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=82.5
Q ss_pred EEEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...+.+|||||+..+. .+++.++. .+|++++|+|+++..+. ..|...+.. .+.|+++++||+|+..
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLD 121 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCC
Confidence 4578999999998765 46677776 69999999999885433 344444443 3789999999999854
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
...+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus 122 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 122 GQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred cCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 33333 345667777899999999999999999999987754
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=1.3e-15 Score=122.52 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=87.7
Q ss_pred eeCCEEEEEEEEeCCC----------chhhhhhhHh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAG----------QESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G----------~~~~~~~~~~-~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.+++. .+.+|||+| +++|..++.. +++.+|++|+|+|+++..+. ....|+..+.. .+.|+++|
T Consensus 239 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv 312 (456)
T 4dcu_A 239 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIV 312 (456)
T ss_dssp EETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEE
T ss_pred EECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEE
Confidence 34554 689999999 7778777654 78999999999999885332 22334443333 46899999
Q ss_pred eeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRRAVSTEEGEQFAKEH-----GLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 72 ~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
+||+|+........++....+... +.+++++||++|.|++++|+++.+.+....
T Consensus 313 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 313 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999766656556666555544 578999999999999999999998775543
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.64 E-value=2.3e-16 Score=118.15 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=82.4
Q ss_pred EEEEEEEeCCCchhhhh------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...+.+|||||+..+.. +.+.++ ..+|++++|+|+++..+. ..|+..+.. .+.|+++++||+|+..
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAK 124 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCC
Confidence 35789999999987654 335565 589999999999986443 234444433 3689999999999854
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
...+.. ....++..++++++++||++|.|++++|+++.+.+.
T Consensus 125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 433332 356677888999999999999999999999988653
No 128
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.62 E-value=4.1e-15 Score=122.87 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=89.9
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+++.+.++||||||+.+|...+...++.+|++|+|+|+++..+......|..... .++|+++++||+|+.... .
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~ 140 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P 140 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence 5667899999999999999999999999999999999998776666666655432 468999999999996532 2
Q ss_pred HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
......+...+++. ++++||++|.|+++++++|.+.+.
T Consensus 141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 33344555666764 899999999999999999887654
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.61 E-value=6.1e-16 Score=115.73 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=78.3
Q ss_pred EEEEEeCCCchhhhh----------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~----------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+|||||...+.. +++.++ .++|++|+|+|+++..+...+..++. ..+.|+++++||+|+
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDI 122 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhc
Confidence 689999999876643 566777 89999999999998654443332222 247899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
.....+.. ....+...++++++++||++|.|++++|++|.+.
T Consensus 123 ~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 123 AEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 54332211 2344667789999999999999999999998765
No 130
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.61 E-value=6.5e-15 Score=121.59 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=89.6
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
++..+.++||||||+.+|...+...++.+|++|+|+|+++..+......|..... .++|+++++||+|+.... .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~ 142 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V 142 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence 4567899999999999999999999999999999999999877776666655432 468999999999996432 2
Q ss_pred HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
......+...+++. ++++||++|.|++++|++|.+.+.
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 23344455556663 899999999999999999887664
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=4.9e-16 Score=112.67 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=74.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~ 79 (165)
+.+.+|||+|++.++..+..+++. +|++|+|||++ +..++..+..|+..+... ...++|+++|+||+|+..
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 468899999999999999999887 99999999999 888888888888877654 225799999999999976
Q ss_pred CCCCC------HHHHHHHHHHcCCeEEEecCCCCCC
Q 031132 80 RRAVS------TEEGEQFAKEHGLIFMEASAKTAQN 109 (165)
Q Consensus 80 ~~~~~------~~~~~~~~~~~~~~~~~vSa~~~~~ 109 (165)
...+. ..+...++...+.+++++||++|.+
T Consensus 135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 54433 3345556666677899999998765
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.60 E-value=2.4e-15 Score=109.26 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=76.9
Q ss_pred EEEEEEeCCC----------chhhhhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 9 IKLQIWDTAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 9 ~~~~l~Dt~G----------~~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
..+.||||+| ++.+..++..+++. +|++++|+|+++..+.. ...++..+.. .+.|+++|+||+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~ 154 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKC 154 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECG
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEecc
Confidence 4688999999 45667777777776 78899999998753322 2233333332 368999999999
Q ss_pred CCCCCCCCC--HHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 76 DLAHRRAVS--TEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 76 Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
|+....... .......... .+.+++++||++|.|++++|++|.+.+....
T Consensus 155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 986432211 1112222222 4567999999999999999999998876543
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.59 E-value=1.7e-14 Score=114.20 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=86.1
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-- 84 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-- 84 (165)
....+.+|||||+++|...+...+..+|++++|+|+++..++.....++..+... ...|+++++||+|+.+.....
T Consensus 73 ~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 150 (403)
T 3sjy_A 73 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQ 150 (403)
T ss_dssp EEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc--CCCCEEEEEECccccchHHHHHH
Confidence 3478999999999999999999999999999999999876677777777666544 235899999999986432110
Q ss_pred HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 85 TEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 85 ~~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.++...+.... +++++++||++|+|+++++++|.+.+
T Consensus 151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 11122222221 56799999999999999999888755
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.59 E-value=4e-15 Score=120.07 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=73.4
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhh--------HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+++ +.+.+|||+|+.++...+ ..+++.+|++++|+|++++.++..+..+...+... .+.|+++|+||
T Consensus 277 ~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK 352 (476)
T 3gee_A 277 IHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANK 352 (476)
T ss_dssp EETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEEC
T ss_pred EECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEEC
Confidence 3444 468999999998766544 34688999999999999987765433333333322 36899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+|+...... ....+......+++++||++|.|+++++++|.+.+.
T Consensus 353 ~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 353 LDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred cCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 999654322 223333332467999999999999999999988775
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=4.8e-15 Score=118.50 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=85.5
Q ss_pred eeCCEEEEEEEEeCCCc----------hhhhhhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 3 TIDNKPIKLQIWDTAGQ----------ESFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~----------~~~~~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.+++. .+.+|||+|+ +.|..++. .+++.+|++++|+|+++..++... .|+..+.. .+.|+++|
T Consensus 219 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv 292 (436)
T 2hjg_A 219 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIV 292 (436)
T ss_dssp EETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred EECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEE
Confidence 34555 4899999998 55665554 478999999999999998777654 45555443 47899999
Q ss_pred eeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 72 GNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 72 ~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
+||+|+.+.......+... +... .+.+++++||++|.|++++|+.+.+.+...
T Consensus 293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 293 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 9999997655443333322 2222 367899999999999999999998877643
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=2.6e-14 Score=111.50 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=87.1
Q ss_pred EEEEEEeCCCchhhh---------hhhHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQESFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~---------~~~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
..+.+|||+|..... .....+...+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl 292 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDV 292 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECccc
Confidence 458999999985421 22334556799999999998876 6777788888887654 27899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
..... ..+...++...+++++++||++|+|+++++++|.+.+...
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 293 ADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp CCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 64332 2344555667788999999999999999999999988653
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=5.5e-15 Score=113.00 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=87.9
Q ss_pred CCEEEEEEEEe-CCC-----chhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 5 DNKPIKLQIWD-TAG-----QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 5 ~~~~~~~~l~D-t~G-----~~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
-|+.+.++.|| +-| ++++..+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+
T Consensus 46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDL 122 (302)
T ss_dssp BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGG
T ss_pred CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccC
Confidence 46778888888 433 6778888889999999999999999886 88888889886654 47899999999999
Q ss_pred CCCCCCC-HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132 78 AHRRAVS-TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117 (165)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l 117 (165)
.+...+. ..+...++...+++++++||++|.|+++++..+
T Consensus 123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence 6432111 234455566778999999999999999999876
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.56 E-value=3.7e-15 Score=118.64 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=81.7
Q ss_pred EEEEEeCCCchhhhhh-------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 10 KLQIWDTAGQESFRSI-------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~-------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
.+.+|||+|++++..+ +..++..+|++|+|+|++... ....|+..+... +.|+++|+||+|+.....
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence 6899999999876544 456889999999999994433 334455555444 689999999999976543
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
. +....+...++++++++||++|.|++++|++|.+.+.
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3 4455556667889999999999999999999988774
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.55 E-value=3.9e-14 Score=112.35 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=74.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 85 (165)
...+.||||||+++|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+..... ...
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence 368999999999999888877888999999999999632112222222222222 2358999999999965432 223
Q ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+++..++.. .+++++++||++|+|+++++++|...+.
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 445555544 2578999999999999999999887543
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.55 E-value=1.2e-14 Score=109.27 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=80.4
Q ss_pred EEEEEeCCCchhhhh------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132 10 KLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
.+.+|||||+..+.. .+..++ .++|++++|+|+++.. ....++..+... ...|+++++||+|+....
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCccc
Confidence 489999999887655 566776 6899999999998853 333344444333 238999999999975332
Q ss_pred CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.... ....+...++++++++||++|.|++++|+.+...+.
T Consensus 126 ~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 126 GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 2222 255667778999999999999999999999988764
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=5.6e-15 Score=114.72 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=86.6
Q ss_pred EEEEEEeCCCchh----hhhhhHhhh---cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQES----FRSITRSYY---RGAAGALLVYDITR---RETFNHLASWLEDARQHAN--ANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~----~~~~~~~~~---~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D 76 (165)
..+.||||+|+.+ +..++..++ +.+|++|+|+|+++ ..+++.+..|+..+..... ..+|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 3689999999753 333445554 45999999999998 7788888888888877642 4789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+... .+....+...+. .+++++||++++|+++++.+|.+.+.+
T Consensus 286 l~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 286 MPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp STTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 8542 234455666665 679999999999999999999887743
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.54 E-value=2.3e-15 Score=113.59 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred EEEEEEeCCCchhhh----------hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQESFR----------SITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~----------~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
..+.+|||||+..+. ..+..++ +.+|++|+|+|+++......+ ...+... ++|+++|+||+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D 123 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD 123 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence 457899999987655 2344444 799999999999985544333 3333333 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+.....+. .....+...++++++++||++|.|++++|++|.+.+
T Consensus 124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 85433221 123556677899999999999999999999887654
No 143
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.54 E-value=5.5e-15 Score=106.60 Aligned_cols=104 Identities=7% Similarity=0.011 Sum_probs=69.3
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hc--CCCCeEEEEeeCC-CCCCCCCCCHHHHH
Q 031132 16 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HA--NANMTIMLIGNKC-DLAHRRAVSTEEGE 89 (165)
Q Consensus 16 t~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~---~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 89 (165)
.+||.+.+++|+.||.++|++|||+|++|...++ .+..+..+.. .. ..+.|++|++||. |++ ..++..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 4589999999999999999999999999875443 4444432222 11 1578999999995 674 345655554
Q ss_pred HHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 90 QFAK----EHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 90 ~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.... ...+.++.|||.+|+|+.+.++||...+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3221 13455899999999999999999987654
No 144
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=1.9e-14 Score=109.93 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=76.7
Q ss_pred EEEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWL-EDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
...+.||||||..+ +......+++.+|++++|||+++..+.. ..|+ ..+.... .+.|+++|+||+|+.
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence 46789999999875 5566778899999999999998864433 2343 3333322 368999999999986
Q ss_pred CCCCCCHHHHHHHHHHc-C-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~-~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.... .....+..+ + .+++++||++|.|++++++.|.+.+
T Consensus 131 ~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 131 KYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 4321 022223332 3 4689999999999999999887654
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.53 E-value=9.7e-14 Score=112.17 Aligned_cols=111 Identities=21% Similarity=0.144 Sum_probs=81.4
Q ss_pred eeCCEEEEEEEEeCCCch-hhh--------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 3 TIDNKPIKLQIWDTAGQE-SFR--------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~-~~~--------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
.+++ ..+.+|||+|.. ++. .....+++.+|++|+|||++++.+++... ++..+ .+.|+++|+|
T Consensus 287 ~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~N 358 (482)
T 1xzp_A 287 VIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVIN 358 (482)
T ss_dssp EETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEE
T ss_pred ecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEE
Confidence 4454 458999999988 543 23456789999999999999877665432 22222 3689999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 74 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 74 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
|+|+... +..++...+. ..+.+++++||++|+|+++++++|.+.+...
T Consensus 359 K~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 359 KVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQEI 406 (482)
T ss_dssp ECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred Ccccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 9999643 3444444332 2346899999999999999999999987653
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=5.8e-14 Score=112.34 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=78.4
Q ss_pred eeCCEEEEEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 3 TIDNKPIKLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
.+++. .+++|||+|++. +...+..+++.||+++||+|+++..+..+ .++..+... .++|+++|+|
T Consensus 45 ~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~N 118 (439)
T 1mky_A 45 EWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVAN 118 (439)
T ss_dssp EETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEE
T ss_pred EECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEe
Confidence 44555 478999999763 45567888999999999999987544322 222222222 2689999999
Q ss_pred CCCCCCCCCCCHHHH-HHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 74 KCDLAHRRAVSTEEG-EQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 74 K~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
|+|+... . .... ..+. .+++ +++++||++|.|+.++++++.+.+..
T Consensus 119 K~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 119 KAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 9998421 0 1222 2332 4566 68999999999999999999988754
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=7e-14 Score=114.15 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=57.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
++...+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......| ..+.. .++|+++++||+|+..
T Consensus 77 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred EEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 344456799999999999999999999999999999999987665554433 22222 4689999999999853
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.51 E-value=5.5e-14 Score=113.76 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=72.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
++.....+.||||+|+++|...+..++..+|++|+|+|+++..++. .....+..+ ... ...|+++++||+|+
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~-~~~~iIvviNK~Dl 183 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL-GIHNLIIAMNKMDN 183 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT-TCCCEEEEEECGGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc-CCCcEEEEEECcCc
Confidence 4455568999999999999999999999999999999999864432 222222222 221 23569999999999
Q ss_pred CCCCCCCHHH----HHHHHHHc-----CCeEEEecCCCCCCHHHH
Q 031132 78 AHRRAVSTEE----GEQFAKEH-----GLIFMEASAKTAQNVEEA 113 (165)
Q Consensus 78 ~~~~~~~~~~----~~~~~~~~-----~~~~~~vSa~~~~~i~~l 113 (165)
.+......++ ...+.... +++++++||++|+|+.++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 6532222222 22333333 357999999999999853
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.50 E-value=7.9e-14 Score=110.63 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=78.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 85 (165)
...+.||||||+++|.......+..+|++|+|+|+++..........+..+... ...|+++++||+|+..... ...
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence 368999999999999887777788999999999999642112222222222222 2358999999999864321 112
Q ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+++..++.. .+++++++||++|+|+++++++|...+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 233334333 3578999999999999999998876543
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.48 E-value=1.5e-13 Score=111.10 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=80.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-- 83 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-- 83 (165)
..+.+|||||+++|...+...+..+|++|+|+|+++ +.+.+.+ ..+. . .++|.++++||+|+.+....
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~--~~ip~IvviNK~Dl~~~~~~~~ 145 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILD-H--FNIPIIVVITKSDNAGTEEIKR 145 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHH-H--TTCCBCEEEECTTSSCHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHH-H--cCCCEEEEEECCCcccchhHHH
Confidence 578999999999999988999999999999999987 3333332 2222 2 36888999999999642111
Q ss_pred CHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 84 STEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 84 ~~~~~~~~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..++...++... +.+++++||++|+|+++++++|.+.+.
T Consensus 146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 122344445444 567999999999999999999988775
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=3.8e-14 Score=113.33 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=78.6
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCCC-eEEEEeeCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----NANM-TIMLIGNKCDLA 78 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~-p~ivv~nK~Dl~ 78 (165)
++.....+.||||||+++|...+..++..+|++|+|+|+++ .+|+....|......+. ..+. |+++++||+|+.
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 34445679999999999999999999999999999999998 66764433222211111 1244 689999999996
Q ss_pred CCC------CCCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132 79 HRR------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 79 ~~~------~~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~ 115 (165)
+.. ....+++..++...+ ++++++||++|+|+.++++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 421 111234555666655 6799999999999986654
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=7.8e-14 Score=111.64 Aligned_cols=108 Identities=24% Similarity=0.242 Sum_probs=74.9
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDL 77 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 77 (165)
+.....+.||||||+++|...+...+..+|++|+|+|+++... ++ .....+..+.. .++| +++++||+|+
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 3445579999999999999999999999999999999988532 11 22222222222 3566 9999999998
Q ss_pred CCCC------CCCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 031132 78 AHRR------AVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 78 ~~~~------~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~ 115 (165)
.... .....+...++...+ ++++++||++|+|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 011223334444444 4699999999999999766
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.47 E-value=4.3e-13 Score=110.84 Aligned_cols=108 Identities=24% Similarity=0.225 Sum_probs=78.8
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC---
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--- 83 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--- 83 (165)
.+.||||||++.|..++...++.+|++|+|||+++ +.+++.+.. +. . .++|+++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~-~--~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-M--YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HH-H--TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HH-H--cCCeEEEEecccccccccccccC
Confidence 58999999999999999999999999999999998 555554332 22 1 47899999999998542211
Q ss_pred ----------CHH----------HHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 84 ----------STE----------EGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 84 ----------~~~----------~~~~~~~~~~---------------~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
... +........+ ++++++||++|.|+.+++++|...+...
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 010 1111111222 3799999999999999999999877543
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=6.7e-14 Score=111.85 Aligned_cols=106 Identities=20% Similarity=0.102 Sum_probs=76.0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--C-
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--V- 83 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~- 83 (165)
....+.||||||+++|...+..++..+|++|+|+|+++... .....++..+... .-.|+++++||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 34578999999999999988889999999999999988542 2333444433322 2236999999999964211 1
Q ss_pred -CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132 84 -STEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 115 (165)
Q Consensus 84 -~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~ 115 (165)
...+...++..++ ++++++||++|+|+.+++.
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1233445566666 6799999999999988543
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.47 E-value=9.1e-14 Score=109.00 Aligned_cols=113 Identities=9% Similarity=-0.001 Sum_probs=81.6
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGN-KCDLAHRRA 82 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~Dl~~~~~ 82 (165)
+.....+.+|||||+++|.......++.+|++|+|+| +. ..+.....++..+... ++|. ++++| |+|+ +...
T Consensus 56 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~ 129 (370)
T 2elf_A 56 DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHA 129 (370)
T ss_dssp CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHH
T ss_pred ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHH
Confidence 3334568999999999998877778899999999999 54 3344555555544433 5676 88899 9998 4321
Q ss_pred CCH--HHHHHHHHHc---CCeEEE--ecCCC---CCCHHHHHHHHHHHHHH
Q 031132 83 VST--EEGEQFAKEH---GLIFME--ASAKT---AQNVEEAFIKTAATIYK 123 (165)
Q Consensus 83 ~~~--~~~~~~~~~~---~~~~~~--vSa~~---~~~i~~l~~~l~~~i~~ 123 (165)
... ++...++... .+++++ +||++ +.|++++++.|.+.+-.
T Consensus 130 ~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 130 IDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 111 3344444433 368999 99999 99999999999987654
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.46 E-value=4.6e-14 Score=111.83 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=73.9
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.....+.||||||+++|...+...+..+|++|+|+|+++... .....++..+.. .++| +++++||+|+.....
T Consensus 70 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~ 145 (405)
T 2c78_A 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPE 145 (405)
T ss_dssp EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHH
Confidence 34444678999999999999988889999999999999988643 334455554433 3678 889999999864211
Q ss_pred C---CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132 83 V---STEEGEQFAKEHG-----LIFMEASAKTAQN 109 (165)
Q Consensus 83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~ 109 (165)
. ...+...++..++ ++++++||++|.|
T Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 146 LLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 1 1123445555555 5799999999987
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=5.1e-14 Score=112.57 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=72.6
Q ss_pred EEEEEEEeCCCch--------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~--------~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
...+.+|||+|++ .+...+..+++.||++|||+|+++..+... .++..+... .++|+++|+||+|+..
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC--
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCcc
Confidence 3468999999985 677788889999999999999988655443 333333333 5789999999999854
Q ss_pred CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.... ...+. ..++ +++++||++|.|+.++++++.+.+.
T Consensus 126 ~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 126 MRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ---C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred chhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 2211 11112 3455 6899999999999999999987764
No 158
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=104.36 Aligned_cols=105 Identities=6% Similarity=-0.014 Sum_probs=74.0
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hhc-CCCCeEEEEeeC-CCCCCCCCCCHHHHH
Q 031132 16 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DAR-QHA-NANMTIMLIGNK-CDLAHRRAVSTEEGE 89 (165)
Q Consensus 16 t~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~---~i~-~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 89 (165)
.+||.+.+++|+.||.++|++|||+|++|...++ .+..+. .+. ... ..+.|++|++|| .|+.. .++..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4789999999999999999999999999976443 333222 222 111 257999999997 58743 45555544
Q ss_pred HHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 90 QFAK----EHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 90 ~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.... ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 3211 124558999999999999999999987643
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.44 E-value=2e-13 Score=109.79 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhH--------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
+.+++. .+.+|||+|...+...++ .+++.+|++++|+|++++.+... ..|+..+ ...|+++|+|
T Consensus 267 i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~N 338 (462)
T 3geh_A 267 LVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMN 338 (462)
T ss_dssp EEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEE
T ss_pred EEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEE
Confidence 345654 579999999876554433 35789999999999998655543 3333333 2479999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 74 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 74 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
|+|+....... ....+. .+.+++++||++|.|+++++++|.+.+..
T Consensus 339 K~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 339 KIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 99996543332 000001 35679999999999999999999887754
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.43 E-value=1.5e-13 Score=108.60 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC-
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA- 82 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~- 82 (165)
+.....+.||||||+++|...+...+..+|++|+|+|+++..... ...++..+.. .++| +++++||+|+.....
T Consensus 62 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~ 137 (397)
T 1d2e_A 62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEM 137 (397)
T ss_dssp ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHH
T ss_pred ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHH
Confidence 334457899999999999888888999999999999999854322 2333333322 3678 689999999864211
Q ss_pred --CCHHHHHHHHHHcC-----CeEEEecCCCCCC----------HHHHHHHHHHHH
Q 031132 83 --VSTEEGEQFAKEHG-----LIFMEASAKTAQN----------VEEAFIKTAATI 121 (165)
Q Consensus 83 --~~~~~~~~~~~~~~-----~~~~~vSa~~~~~----------i~~l~~~l~~~i 121 (165)
....+...++..++ ++++++||++|.| +.++++.|.+.+
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 11234555666665 5799999998765 666666665543
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.43 E-value=6.2e-12 Score=98.38 Aligned_cols=121 Identities=24% Similarity=0.171 Sum_probs=82.2
Q ss_pred eeeCCEEEEEEEEeCCCc---------hhhhhhhHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 2 ITIDNKPIKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
+.+++. .+.+|||+|. +.+...++ .+..+|++++|+|++++. ....+..|...+......+.|+++
T Consensus 221 i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~il 297 (364)
T 2qtf_A 221 IPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILV 297 (364)
T ss_dssp EEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEE
T ss_pred EEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEE
Confidence 456663 5789999997 22444443 578999999999998876 455555555555444325689999
Q ss_pred EeeCCCCCCCCCCCH--HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132 71 IGNKCDLAHRRAVST--EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126 (165)
Q Consensus 71 v~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~ 126 (165)
|+||+|+.... ... .....++..+ +.+++++||+++.|++++++.|.+.+.....
T Consensus 298 V~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 298 TLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp EEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 99999986432 110 1122223443 2368999999999999999999887765443
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=3.3e-14 Score=114.64 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC--
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR-- 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~-- 81 (165)
...+.||||||+++|...+...+..+|++|+|+|+++.. +|+...++...+......++| +++++||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 356899999999999998888899999999999999862 232112222222211114677 99999999995321
Q ss_pred ----CCCHHHHHHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 031132 82 ----AVSTEEGEQFAKEH-------GLIFMEASAKTAQNVEEAF 114 (165)
Q Consensus 82 ----~~~~~~~~~~~~~~-------~~~~~~vSa~~~~~i~~l~ 114 (165)
.....+...++... +++++++||++|+|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01122345555555 3569999999999998766
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.40 E-value=4.2e-14 Score=115.41 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=78.0
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC-CHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEG 88 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~ 88 (165)
.+.||||||++.|..++..+++.+|++|+|+|+++....... .++..+. ..++|+++++||+|+...... .....
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l 128 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKEL 128 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence 588999999999999999999999999999999985443322 2222222 247899999999998643211 11111
Q ss_pred HHH---HHHc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 89 EQF---AKEH--GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 89 ~~~---~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+ +..+ .++++++||++|.|++++|++|...+.
T Consensus 129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 111 1111 247999999999999999999987653
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.40 E-value=2.3e-13 Score=103.94 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCch-h--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQE-S--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~-~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
...+.+|||+|.. . +......+++.+|++++|+|+++ -+ ....++...... .+.|+++++||+|+.
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNV 129 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTC
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccC
Confidence 3468899999997 3 22334566789999999999977 22 222333332222 468999999999985
Q ss_pred CCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 79 HRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
............+...+++ .++++||.++.|++++++.+...+
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4111112333444444566 599999999999999999887654
No 165
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=5.1e-12 Score=101.08 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhh------------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSI------------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~------------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i 69 (165)
+.++|. .+.+|||+|..+.... ...+++.+|++++|+|+++..+.... ++...... .+.|++
T Consensus 223 i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~i 296 (439)
T 1mky_A 223 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASV 296 (439)
T ss_dssp EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEE
T ss_pred EEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEE
Confidence 355666 4789999998543322 13467889999999999876555432 22222222 478999
Q ss_pred EEeeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 70 LIGNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 70 vv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+++||+|+.+.......+... +... .+.+++++||++|.|++++|+.+.+.+..
T Consensus 297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 297 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999986544333333322 2222 25689999999999999999999876544
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.38 E-value=5e-13 Score=107.47 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=75.0
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCe-EEEEeeCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMT-IMLIGNKCD 76 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D 76 (165)
++.....+.||||||+++|...+...+..+|++|+|+|+++.. +|+ ....++..+. . .++| +++++||+|
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~--~~v~~iivviNK~D 156 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMD 156 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H--cCCCeEEEEEEccc
Confidence 3445567999999999999999999999999999999998753 221 2333332222 2 3555 899999999
Q ss_pred CCCCCC----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132 77 LAHRRA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEA 113 (165)
Q Consensus 77 l~~~~~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l 113 (165)
+.+... ....+...++..++ ++++++||++|+|+.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 963111 11223444555555 57999999999998754
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=6.4e-13 Score=115.68 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=79.9
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
++.....+.||||||+++|...+...+..+|++|+|+|+++... .....++..+... ++| +++++||+|+.+...
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e 429 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEE 429 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHH
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchh
Confidence 44455678999999999999888889999999999999988532 2334444444332 577 789999999964211
Q ss_pred C---CHHHHHHHHHHcC-----CeEEEecCCCC--------CCHHHHHHHHHHH
Q 031132 83 V---STEEGEQFAKEHG-----LIFMEASAKTA--------QNVEEAFIKTAAT 120 (165)
Q Consensus 83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~--------~~i~~l~~~l~~~ 120 (165)
. ...+...++...+ ++++++||++| .|+.++++.|...
T Consensus 430 ~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 430 LLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 1 1234555666655 57999999999 3466666666543
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.7e-13 Score=112.47 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=73.1
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANAN-MTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~ 79 (165)
++.....+.||||||+++|...+..+++.+|++|+|+|+++.. ++.....+...+......+ .|++||+||+|+..
T Consensus 240 ~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 240 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred EecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 3444567999999999999999999999999999999998742 1100111111111111123 45999999999865
Q ss_pred CCCCC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132 80 RRAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEEA 113 (165)
Q Consensus 80 ~~~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l 113 (165)
..... ..+...++...+ ++++++||++|.|+.++
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22111 122333444443 57999999999999876
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=5.9e-13 Score=106.99 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=73.5
Q ss_pred CEEEEEEEEeCCC--------chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 6 NKPIKLQIWDTAG--------QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 6 ~~~~~~~l~Dt~G--------~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.....+.+|||+| ++.+...+..+++.+|++|||+|.++..+ ....++..+... .++|+++|+||+|+
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDN 143 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC--
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 3345689999999 77888889999999999999999877432 223344444333 57899999999998
Q ss_pred CCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
.... .....+ ...++ ..+++||++|.|+.++++.+.+.+
T Consensus 144 ~~~~----~~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 144 TEMR----ANIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -----------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred hhhh----hhHHHH-HHcCCCceEEeecccccchHHHHHHHHhhc
Confidence 5321 111111 12343 478999999999999999988765
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=106.67 Aligned_cols=116 Identities=14% Similarity=0.233 Sum_probs=62.5
Q ss_pred eCCEEEEEEEEeCCCc-------hhhhhhhH-------hhhcCCc-------------EEEEEEeCCChhhHHHHH-HHH
Q 031132 4 IDNKPIKLQIWDTAGQ-------ESFRSITR-------SYYRGAA-------------GALLVYDITRRETFNHLA-SWL 55 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~ad-------------~vi~v~D~~~~~s~~~~~-~~~ 55 (165)
.++..+.+.+|||+|+ +.+..++. .+++.++ +++|+++.+ ..++..+. .++
T Consensus 90 ~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~ 168 (361)
T 2qag_A 90 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFM 168 (361)
T ss_dssp --CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHH
T ss_pred cCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHH
Confidence 3566678999999999 66777766 6666544 455555532 23344333 233
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132 56 EDARQHANANMTIMLIGNKCDLAHRRAVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125 (165)
Q Consensus 56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~ 125 (165)
..+ ..++|+++|+||+|+.....+.. ..+..++...+++++++||+++.| ++.|.++...+....
T Consensus 169 ~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 169 KAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 332 25789999999999865433322 345555666789999999999999 999999998887644
No 171
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.33 E-value=9.7e-13 Score=93.30 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=61.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHhc----CCCCeEEEEeeCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLA 78 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~ 78 (165)
.+.+.+|||+|++.+...+..++.. +|++|+|||++ +..++..+..|+..+.... ..+.|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 4467899999999988888888776 89999999999 8889999888887776542 2479999999999996
Q ss_pred CCC
Q 031132 79 HRR 81 (165)
Q Consensus 79 ~~~ 81 (165)
...
T Consensus 170 ~~~ 172 (193)
T 2ged_A 170 TAR 172 (193)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.32 E-value=1.3e-12 Score=98.91 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=74.9
Q ss_pred EEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 9 IKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~vi-~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
..+.||||||.. .+..++..+++.++.++ +|+|+++..+..+...++..+. ..+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 578999999963 46678888999988776 7999987544433333333332 246899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHH--cC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKE--HG-LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+|+................. .+ .+++++||++|.|++++++++.+.-
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 99865443222222110001 12 2578899999999999999988743
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.31 E-value=3.4e-13 Score=109.26 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=74.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC--CC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--AV 83 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~ 83 (165)
..+.||||||++.|..++...+..+|++|+|+|+++. .+.+.+ ..+. . .++|+++++||+|+.... .+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~-~--~~vPiIVviNKiDl~~~~~~~v 123 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAK-A--AQVPVVVAVNKIDKPEADPDRV 123 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHH-H--TTCCEEEEEECSSSSTTCCCCT
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHH-h--cCceEEEEEEeccccccCHHHH
Confidence 3578999999999999999999999999999999874 333322 2222 1 478999999999996421 11
Q ss_pred CHH--HHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Q 031132 84 STE--EGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 84 ~~~--~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
... ....++..++ ++++++||++|.|++++|++|..
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 000 0000112222 68999999999999999999864
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=1.1e-11 Score=103.90 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=53.6
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
..+.+++|||+|+.+|...+..+++.+|++++|+|+++..... ...++..+.. .++|+++++||+|+.
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 3567899999999999999999999999999999988754332 2234444333 368999999999985
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.28 E-value=2.8e-11 Score=89.03 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred EEEEEEeCCCc-----------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132 9 IKLQIWDTAGQ-----------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKC 75 (165)
Q Consensus 9 ~~~~l~Dt~G~-----------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~ 75 (165)
..+.+|||||. ..+...+..+++++|++|+|+|++.... ....++..+..... ...|+++|+||+
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 35799999994 3455566667788999999999875332 11223333322111 246999999999
Q ss_pred CCCCCCCCC------HHHHHHHHHHcCCeEEEecCCCC-----CCHHHHHHHHHHHH
Q 031132 76 DLAHRRAVS------TEEGEQFAKEHGLIFMEASAKTA-----QNVEEAFIKTAATI 121 (165)
Q Consensus 76 Dl~~~~~~~------~~~~~~~~~~~~~~~~~vSa~~~-----~~i~~l~~~l~~~i 121 (165)
|+.....+. ....+.++...+..++.++...+ .++.++|..+...+
T Consensus 156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp GGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 986543332 23566777788888888876644 57777777666555
No 176
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.27 E-value=1.7e-12 Score=97.66 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=61.5
Q ss_pred CCEEEEEEEEeCCCch-------hhhhhh-------HhhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHH
Q 031132 5 DNKPIKLQIWDTAGQE-------SFRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLASWLED 57 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~-------~~~~~~-------~~~~~~-------------ad~vi~v~D~~~~~s~~~~~~~~~~ 57 (165)
++..+.+.+|||+|.. .+..++ ..++.. +|+++++++.+...-......++..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 4455689999999972 344443 444443 7899999987653222222223333
Q ss_pred HHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 58 ARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 58 i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+.. ++|+++|+||+|+....... ...+.......+++++++||.+++|+.+++.+|.+.
T Consensus 141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 322 68999999999985322211 122344455678899999999999999998887654
No 177
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.27 E-value=9.4e-12 Score=92.65 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=71.1
Q ss_pred EEEEEEeCCCchhh-----------hhhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCeEEEEee-CC
Q 031132 9 IKLQIWDTAGQESF-----------RSITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGN-KC 75 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~-----------~~~~~~~~~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~n-K~ 75 (165)
..+.||||||...+ ......+++.+|++|+|+|++.... ...+..++..+.... ...|+++++| |+
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKE 149 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGG
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEccc
Confidence 45899999998653 2223346789999999999986221 122223333321111 1356666666 99
Q ss_pred CCCCCCCCCH-------HHHHHHHHHcCCe---E--EEecCCCCCCHHHHHHHHHHHHHH
Q 031132 76 DLAHRRAVST-------EEGEQFAKEHGLI---F--MEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 76 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
|+... .+.. ...+.++...+.. + +++||+++.|++++|++|.+.+..
T Consensus 150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 99632 2211 2233455555533 2 789999999999999999988765
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.23 E-value=4.8e-11 Score=97.51 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=53.7
Q ss_pred eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+++..+.+.+|||||+.+|...+..++..+|++|+|+|+++..... ...++..+. ..++|+++++||+|+..
T Consensus 77 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 77 FPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred EEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 3444567999999999999988888999999999999998853221 222222221 14789999999999853
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.22 E-value=4.3e-11 Score=100.61 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 4678999999999999999999999999999999998776665544443 322 3689999999999853
No 180
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.20 E-value=1.8e-10 Score=96.98 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=55.0
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+..+.+.||||+|+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 3448899999999999999999999999999999999987554433333 22222 4689999999999853
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.17 E-value=1.2e-11 Score=96.47 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=74.8
Q ss_pred EEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 10 KLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+|||||..++ ..+...+++++|++|+|+|+++..... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 4789999998765 667888999999999999876533221 2233333333335789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
+.............+....+.+|+.+|+..+.++++.+..+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 8755444444444334445778999999988887766554433
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.16 E-value=4.6e-11 Score=100.47 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=78.2
Q ss_pred EEEEEeCCCchh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 10 KLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 10 ~~~l~Dt~G~~~---~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
.+.||||||... ....+..+++.+|++|||+|+++..+..+...|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 489999999765 345667889999999999999988777666555433321 36789999999998543211111
Q ss_pred ----------HHHH-----HHHH--------cCCeEEEecCC--------------CCCCHHHHHHHHHHHHHH
Q 031132 87 ----------EGEQ-----FAKE--------HGLIFMEASAK--------------TAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 87 ----------~~~~-----~~~~--------~~~~~~~vSa~--------------~~~~i~~l~~~l~~~i~~ 123 (165)
.... +... ...+++++||+ ++.|+.+++..|.+.+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 1111 12359999999 999999999999887754
No 183
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.15 E-value=2.5e-10 Score=89.39 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=72.8
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HHH
Q 031132 18 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAK 93 (165)
Q Consensus 18 G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 93 (165)
..++|+.+++.+++.++++++|+|+++.. ..|...+.... .+.|+++|+||+|+.... ...+.... ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 46789999999999999999999999853 34555555544 478999999999996432 33333333 355
Q ss_pred HcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132 94 EHGL---IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 94 ~~~~---~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
..++ +++++||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999988653
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.15 E-value=1.6e-10 Score=85.68 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=70.6
Q ss_pred EEEEEEeCCCc--------hhhhhhhHhh----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEee
Q 031132 9 IKLQIWDTAGQ--------ESFRSITRSY----YRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGN 73 (165)
Q Consensus 9 ~~~~l~Dt~G~--------~~~~~~~~~~----~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~n 73 (165)
..+.||||||. +.+...+..+ .+++|++|+|+|++.... ....++..+..... .+.|++|++|
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 45889999997 3333323333 389999999999985221 12222333333221 3689999999
Q ss_pred CCCCCCCCCC------CHHHHHHHHHHcCCeEEEecCCC-----CCCHHHHHHHHHHHHH
Q 031132 74 KCDLAHRRAV------STEEGEQFAKEHGLIFMEASAKT-----AQNVEEAFIKTAATIY 122 (165)
Q Consensus 74 K~Dl~~~~~~------~~~~~~~~~~~~~~~~~~vSa~~-----~~~i~~l~~~l~~~i~ 122 (165)
|.|+...... .....+.+....+..++.++... +.|+.++++.|.+.+.
T Consensus 148 K~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 148 KEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 9999542210 01335667777788887776554 4688888887766554
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.13 E-value=3.6e-12 Score=105.39 Aligned_cols=103 Identities=23% Similarity=0.188 Sum_probs=57.7
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031132 6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLASWLEDARQHANANMT-IMLIGNKCDLA 78 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 78 (165)
.....+.||||||+++|...+...+..+|++|+|+|+++.. ++ ......+..+. . .++| +++|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence 34567899999999999888888899999999999998632 11 11112222222 2 3565 89999999986
Q ss_pred CCCCCC----HHHHHHHH-HHcCC-----eEEEecCCCCCCHH
Q 031132 79 HRRAVS----TEEGEQFA-KEHGL-----IFMEASAKTAQNVE 111 (165)
Q Consensus 79 ~~~~~~----~~~~~~~~-~~~~~-----~~~~vSa~~~~~i~ 111 (165)
...... ..++..+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 421111 12233333 33454 69999999999998
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=3.8e-10 Score=89.62 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=80.1
Q ss_pred EEEEEEeCCCchh----hhhhhH---hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQES----FRSITR---SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~----~~~~~~---~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 79 (165)
..+.+||++|... +..+.. ..++.++.+++++|++ ...+..+..+...+..... ...|.++++||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 4578999999743 111222 2356799999999997 4456666666666554421 3579999999999854
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
. .........+...+.+++.+||.+++|+++++++|.+.+...
T Consensus 284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 3 222333444445678899999999999999999999988653
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.11 E-value=4.3e-10 Score=94.60 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
.+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+......|.. +.. .+.|+++++||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 4578999999999999999999999999999999998766655544432 332 3689999999999853
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.09 E-value=4.3e-10 Score=83.45 Aligned_cols=112 Identities=17% Similarity=-0.005 Sum_probs=69.0
Q ss_pred EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCeEEEEeeCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRR 81 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~ 81 (165)
+.+.||||+|+........ ..+.. +++++++|++...+........... ......+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4689999999987543322 24466 8999999876433222222111111 11111368999999999985432
Q ss_pred CCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 82 AVSTEEGEQ----------------------------FAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 82 ~~~~~~~~~----------------------------~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.. .+... ++..++ .+++++||++++|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11 11111 023333 479999999999999999999877643
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.07 E-value=7.2e-10 Score=79.40 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=70.9
Q ss_pred EEEEEeCCCch----------hhhhhhHhhh---cCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 10 KLQIWDTAGQE----------SFRSITRSYY---RGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 10 ~~~l~Dt~G~~----------~~~~~~~~~~---~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
.+.+|||+|.. .+......++ ..++++++++|+++..+.. .+..|+. . .+.|+++++||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEec
Confidence 36899999974 2344444454 5789999999998865443 2222222 2 46899999999
Q ss_pred CCCCCCCCC--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132 75 CDLAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 75 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i 121 (165)
+|+...... ....+..++...+ +.++++||+++.|++++++.|.+.+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 998542211 1223334444443 4688999999999999999887765
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.07 E-value=3.2e-10 Score=86.46 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=68.8
Q ss_pred EEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 9 IKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
..+.||||||..+ +...+..+++.+|++++|+|+++.. .......++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 3689999999753 5667788899999999999974322 111111222222 1247899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEecCC---C---CCCHHHHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAK---T---AQNVEEAFIKTAATIY 122 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~---~---~~~i~~l~~~l~~~i~ 122 (165)
+|+..................+..++++|+. + +.|+.+++..+.+.+-
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9986544322222221001122557777655 3 6788888888776654
No 191
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=8.1e-10 Score=86.53 Aligned_cols=97 Identities=24% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HH
Q 031132 17 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FA 92 (165)
Q Consensus 17 ~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~ 92 (165)
..++.|+..++.++..++++++|+|+++..+ .|...+.... .+.|+++|+||+|+.... ...+.... ++
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 4578899999999999999999999999763 3334444443 478999999999986432 33333333 34
Q ss_pred HHcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132 93 KEHGL---IFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 93 ~~~~~---~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
...++ .++.+||++|.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 55676 68999999999999999988654
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.01 E-value=1.8e-09 Score=88.58 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=57.3
Q ss_pred eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132 3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79 (165)
Q Consensus 3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 79 (165)
+++++.+.++|.||||+.+|..-....++-+|++|+|+|+...........| ..+.. .++|.++++||+|...
T Consensus 94 ~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 94 QFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred EEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 4555567799999999999999888889999999999999986544444333 33332 4799999999999853
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.98 E-value=1.8e-10 Score=89.66 Aligned_cols=106 Identities=10% Similarity=0.041 Sum_probs=69.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-- 85 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 85 (165)
.+.+.||||+|... .....+..+|++++|+|++.......+.. .. .+.|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHHHHHH
Confidence 35689999999543 22334589999999999876543322210 01 2468999999999853211110
Q ss_pred HHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 86 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 86 ~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
.+....... ++.+++++||++|+|+++++++|.+.+...
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 111111111 146799999999999999999999887653
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.96 E-value=9.4e-10 Score=79.55 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=68.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+.+.+|||+|+..... .+...++.+++|+|++..... ...+. .. .+.|+++++||+|+...........
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~---~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP---EI---FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH---HH---HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh---hh---hhcCCEEEEecccCCcchhhHHHHH
Confidence 4578899998621111 111357899999998765321 11111 11 1478999999999854322345555
Q ss_pred HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
...+... +.+++++||++|.|++++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5555543 46899999999999999999998877554
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.94 E-value=2.4e-10 Score=87.15 Aligned_cols=113 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred CEEEEEEEEeCCCc-------hhhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHH
Q 031132 6 NKPIKLQIWDTAGQ-------ESFRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLASWLEDA 58 (165)
Q Consensus 6 ~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~vi~v~D~~~~~s~~~~~~~~~~i 58 (165)
+....+.+|||+|+ +.+..+.. .+++. +++++|+.+++.. +++.+.. ..+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l 149 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFM 149 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHH
Confidence 33467899999998 55555554 44443 3446666665431 2322221 222
Q ss_pred HHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 59 RQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 59 ~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
.... ...++++|+||+|+.....+ ..+++..++..++++++++||+++ |++++|..+.+.+..
T Consensus 150 ~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 150 KAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 2222 45799999999998643322 234567778888999999999999 999999999988864
No 196
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.93 E-value=1.3e-09 Score=81.34 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=51.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc---------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYR---------GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~---------~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl 77 (165)
..+.+|||||+.++....+.+++ ++|+++||+|++..........|+..+...... ..|+++|+||+|+
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 36899999999776554444443 789999999987654222334566666655432 2499999999998
Q ss_pred CCCCCC
Q 031132 78 AHRRAV 83 (165)
Q Consensus 78 ~~~~~~ 83 (165)
......
T Consensus 164 ~~~~~~ 169 (262)
T 3def_A 164 SPPDEL 169 (262)
T ss_dssp CCSTTC
T ss_pred CCCCCc
Confidence 544333
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=1.4e-09 Score=85.99 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=24.3
Q ss_pred EEEEEEEeCCCchh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 031132 8 PIKLQIWDTAGQES----FRSITR---SYYRGAAGALLVYDITRR 45 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~----~~~~~~---~~~~~ad~vi~v~D~~~~ 45 (165)
.+.++||||||... ...++. .+++.+|++++|+|+++.
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57899999999864 233444 346899999999999874
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.85 E-value=2.9e-09 Score=91.33 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
++..+.++||||+|+.+|...+..+++.+|++|+|||+++..++.....|.... . .++|+++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 455789999999999999999999999999999999999987776655454322 1 468999999999985
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=1.1e-08 Score=77.40 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred eCCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHH
Q 031132 15 DTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 91 (165)
Q Consensus 15 Dt~G~~-~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 91 (165)
..||+. +....+...++.+|++++|+|++++.+.. .+..++ .++|.++|+||+||.... ..+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence 356764 44555666789999999999999986653 333332 468999999999995421 11222333
Q ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132 92 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124 (165)
Q Consensus 92 ~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~ 124 (165)
....+++++++||.++.|++++++.+.+.+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 445578999999999999999999887776543
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.83 E-value=2.1e-10 Score=89.23 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=66.5
Q ss_pred EEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132 9 IKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 74 (165)
Q Consensus 9 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 74 (165)
..+.||||||.. .+..+...|+..++ ++++|+|++....-.+...++. .....+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~---~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK---EVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH---HHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH---HhCcCCCceEEEecc
Confidence 568999999963 45667778886665 5555666654322222222222 222357899999999
Q ss_pred CCCCCCCCCCHHHHHH--HHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132 75 CDLAHRRAVSTEEGEQ--FAKEHGL-IFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 75 ~Dl~~~~~~~~~~~~~--~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
+|+............. +....++ +++++||+++.|++++++++..
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9986543322221111 0011232 4678999999999999998876
No 201
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.81 E-value=4.7e-09 Score=78.56 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=49.0
Q ss_pred EEEEEEEEeCCCchhhhhhh-------Hhh--hcCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCC--CeEEEEeeC
Q 031132 7 KPIKLQIWDTAGQESFRSIT-------RSY--YRGAAGALLVYDITRRETFN-HLASWLEDARQHANAN--MTIMLIGNK 74 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~-------~~~--~~~ad~vi~v~D~~~~~s~~-~~~~~~~~i~~~~~~~--~p~ivv~nK 74 (165)
..+.+.+|||||+.++.... ..+ ...+|++++|+|++... +. ....|+..+......+ .|+++|+||
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 34569999999997654221 122 34799999999986532 32 2335666665554222 699999999
Q ss_pred CCCCCCC
Q 031132 75 CDLAHRR 81 (165)
Q Consensus 75 ~Dl~~~~ 81 (165)
+|+....
T Consensus 164 ~Dl~~~~ 170 (270)
T 1h65_A 164 AQFSPPD 170 (270)
T ss_dssp CSCCCGG
T ss_pred cccCCcC
Confidence 9986443
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.79 E-value=4.2e-09 Score=81.55 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=64.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--H
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--E 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 86 (165)
+.+.||||+|....... ....+|++++|+|++....+..+.. . . .+.|.++|+||+|+........ .
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~---~--~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---G---L--MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---H---H--HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---h---h--hcccCEEEEECCCCCChHHHHHHHH
Confidence 56899999997654332 4689999999999976532211110 0 0 1367899999999854211110 1
Q ss_pred HHHHHHHHc-------CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 87 EGEQFAKEH-------GLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 87 ~~~~~~~~~-------~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
+........ ..+++++||++|.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122111121 346899999999999999999998764
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.74 E-value=8.8e-09 Score=85.90 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+++.++.+.++|.||||+.+|......-++-+|++|+|+|+...-.... ...+..+... ++|.++++||+|..
T Consensus 60 ~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 60 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp CCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSS
T ss_pred EEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccc
Confidence 3455666779999999999999988889999999999999988643332 2333333333 68999999999974
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=5.7e-09 Score=82.89 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=51.3
Q ss_pred EEEEEEEEeCCCchhh-------hhh------------------hHhhhcCCc--EEEEEEeCCChhhHHHHH-HHHHHH
Q 031132 7 KPIKLQIWDTAGQESF-------RSI------------------TRSYYRGAA--GALLVYDITRRETFNHLA-SWLEDA 58 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~-------~~~------------------~~~~~~~ad--~vi~v~D~~~~~s~~~~~-~~~~~i 58 (165)
....+.+|||+|...+ ..+ .+.++.+++ +++|+.+++. .++.... .|+..+
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L 164 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL 164 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH
Confidence 3347899999998653 111 122344555 4555555431 1233332 355444
Q ss_pred HHhcCCCCeEEEEeeCCCCCCCCCCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 59 RQHANANMTIMLIGNKCDLAHRRAVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 59 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
. .++|+|+|+||+|+.....+.. ..+...+...+++++++||.+++++.++|..+..
T Consensus 165 ~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 165 H----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp T----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred h----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 2 3689999999999865443333 4556667778999999999999999987776654
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=1.6e-07 Score=72.94 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=61.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+.+.|+||+|.... .......+|++++|+|++.......+.. .. ...|.++++||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCCchhH-HHHH
Confidence 45789999996421 2345679999999999987532221111 11 24688999999998531110 0111
Q ss_pred HHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 89 EQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 89 ~~~~~----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
..+.. .+..+++++||+++.|+++++++|.+.+-
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11211 12346899999999999999999988763
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.61 E-value=3.6e-07 Score=77.06 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=53.7
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+.+.++|.||||+.+|..-....++-+|++|+|+|+...-.......| ...... ++|.++++||+|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc---CCCeEEEEcccccc
Confidence 467899999999999999888899999999999999886544433333 333333 68999999999974
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.55 E-value=2e-08 Score=84.91 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=68.2
Q ss_pred EEEEEeCCCchh-------------hhhhhHhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 10 KLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 10 ~~~l~Dt~G~~~-------------~~~~~~~~~-~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.+.|+||||... ...+...|+ ..+|++++|+|++......+...++..+ ...+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH---CTTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcCCCEEEEEeCc
Confidence 367999999543 334455555 5789999999998753322222222222 22468999999999
Q ss_pred CCCCCCCCCHHHHHHHH--HHcC-CeEEEecCCCCCCHHHHHHHHHHH
Q 031132 76 DLAHRRAVSTEEGEQFA--KEHG-LIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~--~~~~-~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
|+............... ...+ .+++.+||++|.|++++++.+...
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 98654433222111000 0112 246789999999999999988763
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.50 E-value=6.4e-08 Score=79.43 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=51.5
Q ss_pred EEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 10 KLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
.+.||||+|... +...+..++..+|++|+|+|+++.........++..+.. .+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 588999999865 557778889999999999999875444445555554432 357999999999986
Q ss_pred C
Q 031132 79 H 79 (165)
Q Consensus 79 ~ 79 (165)
.
T Consensus 232 ~ 232 (550)
T 2qpt_A 232 E 232 (550)
T ss_dssp C
T ss_pred C
Confidence 4
No 209
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.44 E-value=5e-08 Score=74.48 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=61.0
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCe
Q 031132 22 FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLI 98 (165)
Q Consensus 22 ~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 98 (165)
...+.+..+.++|.+++|+|+.++. +...+..++..... .++|.+||+||+||.+.... ............|++
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 3445566789999999999998654 44445554443332 46899999999999643210 012333344456899
Q ss_pred EEEecCCCCCCHHHHHH
Q 031132 99 FMEASAKTAQNVEEAFI 115 (165)
Q Consensus 99 ~~~vSa~~~~~i~~l~~ 115 (165)
++.+||.++.|+++++.
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999998888765544
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.39 E-value=8.6e-06 Score=63.49 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=29.5
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 105 (165)
.+|+++++|+.|...........+..++...+.+++++||+
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 48999999999964212223455666777778899999965
No 211
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.9e-07 Score=69.73 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 031132 17 AGQES-FRSITRSYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 93 (165)
Q Consensus 17 ~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 93 (165)
||+.. -.......++++|++++|+|++++.+... +. ++ ++|.++|+||+||.... ..+....+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~--~~~~~~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEK--TTKKWVEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHH--HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHH--HHHHHHHHHH
Confidence 45532 23345567899999999999998765432 21 11 68999999999995421 1122233444
Q ss_pred HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132 94 EHGLIFMEASAKTAQNVEEAFIKTAA 119 (165)
Q Consensus 94 ~~~~~~~~vSa~~~~~i~~l~~~l~~ 119 (165)
..++++ .+||.++.|+++++..+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 567888 9999999999998887643
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.36 E-value=8e-07 Score=68.67 Aligned_cols=104 Identities=8% Similarity=0.031 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
.+.+.|+||+|...-.. .....+|.+++|+|++.......+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 35689999999754221 235789999999998654321111111 11 23557777999974322111122
Q ss_pred HHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132 88 GEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY 122 (165)
Q Consensus 88 ~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~ 122 (165)
.+.+... +..+++.+||+++.|++++++.|.+..-
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 1346899999999999999999988654
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.31 E-value=2e-06 Score=67.16 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=36.1
Q ss_pred CCeEEEEeeCCCCC--CC-CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 031132 65 NMTIMLIGNKCDLA--HR-RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~ 116 (165)
.+|+++++||.|.. +. .......+..++...+.+++++||+...++.++.+.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 37999999999842 21 123345666777777899999999886666655443
No 214
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.26 E-value=3e-06 Score=65.90 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=56.5
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-HHHHHHHHHHcCCeEEEecCCCC
Q 031132 29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHGLIFMEASAKTA 107 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~ 107 (165)
...++|.+++|.+..-..+...+..++...... ++|++||+||+||....... ...........|++++.+||.++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999887654333455555555544333 67889999999995432100 11122334456899999999999
Q ss_pred CCHHHHHHH
Q 031132 108 QNVEEAFIK 116 (165)
Q Consensus 108 ~~i~~l~~~ 116 (165)
.|++++...
T Consensus 204 ~gl~~L~~~ 212 (358)
T 2rcn_A 204 DGLKPLEEA 212 (358)
T ss_dssp BTHHHHHHH
T ss_pred cCHHHHHHh
Confidence 999987764
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.25 E-value=1.1e-06 Score=63.42 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
..|.++++||+|+.........+...++... +.+++++||++|.|++++|++|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3678999999998543334556666666554 5789999999999999999999887643
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0017 Score=50.76 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=53.9
Q ss_pred EEEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 79 (165)
.+++|+||||.... .......++.+|++++|+|++++.. ....+...+..... ...|.++++||.|...
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 35889999997432 1122344678999999999998732 22222233332221 4578888999999632
Q ss_pred --------CCCCCHHHHHHHHHHcCCe
Q 031132 80 --------RRAVSTEEGEQFAKEHGLI 98 (165)
Q Consensus 80 --------~~~~~~~~~~~~~~~~~~~ 98 (165)
....+.++...+...+.+.
T Consensus 197 i~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 197 ISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred hhhhcchhhhhccHHHHHHHHHHhccc
Confidence 1235566666665555543
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.39 E-value=0.00023 Score=57.81 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=61.1
Q ss_pred EEEEEEeCCCchhhh-hhhHh---h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR-SITRS---Y--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRR 81 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~-~~~~~---~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~ 81 (165)
+.+.|+||+|..... .++.. . +..+|.+++|+|++...... .....+... .|+ .+|+||.|.....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTSCCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCccccch
Confidence 468999999986421 11111 1 22789999999998754321 122222221 464 8889999985332
Q ss_pred CCCHHHHHHHHHHcCCeE------------------EEecCCCCCC-HHHHHHHHHHH
Q 031132 82 AVSTEEGEQFAKEHGLIF------------------MEASAKTAQN-VEEAFIKTAAT 120 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~~-i~~l~~~l~~~ 120 (165)
.. ........+.|+ +++|+..|.| +.++++++.+.
T Consensus 257 g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 GG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 122233445543 3468899999 99988888765
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.70 E-value=0.0077 Score=48.06 Aligned_cols=86 Identities=16% Similarity=0.046 Sum_probs=51.3
Q ss_pred EEEEEEeCCCchhhh-----hhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR-----SITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.++||+|..... .+.. .....+|.+++|+|++........ ...+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence 457899999964321 1111 113367999999999875332222 2333322 245678899999743
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 031132 83 VSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vSa 104 (165)
..-.+..+....+.|+.+++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 223344555667889877764
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.65 E-value=0.0014 Score=51.66 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=24.3
Q ss_pred EEEEEeCCCchhhhh-------hhHhhhcCCcEEEEEEeCCCh
Q 031132 10 KLQIWDTAGQESFRS-------ITRSYYRGAAGALLVYDITRR 45 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~-------~~~~~~~~ad~vi~v~D~~~~ 45 (165)
.+++|||+|..++.. .+..+++.+|++++|+|+++.
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 589999999976543 566788999999999999864
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.33 E-value=0.053 Score=42.56 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.8
Q ss_pred EEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCC
Q 031132 10 KLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITR 44 (165)
Q Consensus 10 ~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~ 44 (165)
.+.+||++|... ....+...++.+|++++|+|+.+
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 579999999532 33345566789999999999864
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.042 Score=41.41 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=55.2
Q ss_pred EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031132 9 IKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAH 79 (165)
Q Consensus 9 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~ 79 (165)
+.+.+.||+|... ... +.. .....+|.+++|+|+..... .......+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4578999999876 321 221 12447899999999875322 2222222222 245 678899999642
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
.......+....+.|+.+++ +|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 22334556667788987776 4666544
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.33 E-value=0.04 Score=43.79 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=53.8
Q ss_pred EEEEEEeCCCchh--hh-hh---hHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQES--FR-SI---TRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~--~~-~~---~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.+.+.||+|... .. .+ .... .-..+.+++|+|+........ ....+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc-
Confidence 3467999999643 11 11 1111 225699999999987543222 22333333 246788999999743
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV 110 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 110 (165)
..-.........+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233445556667999888875 6554
No 223
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.78 E-value=0.11 Score=36.16 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=54.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCCCCHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 86 (165)
+.+.++|+++.. .......+..+|.+|+++.++... ..+...+..+.... ..+.++.+|.|+.|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 457899999876 334455667799999999886544 55666666665443 235678999999985321 1 22
Q ss_pred HHHHHHHHcCCeEE
Q 031132 87 EGEQFAKEHGLIFM 100 (165)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (165)
+...+...++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 33444444555543
No 224
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.31 E-value=0.51 Score=33.62 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+-+.++|+++... ......+..+|.+|+++.++ ..+...+...+..+.........+.+|.|+.+... ....+
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-- 191 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence 4578899987542 24455677899999999874 56677777777776654322456788999998532 23332
Q ss_pred HHHHHHcCCeEEEecC
Q 031132 89 EQFAKEHGLIFMEASA 104 (165)
Q Consensus 89 ~~~~~~~~~~~~~vSa 104 (165)
.+.+.++.+++.+-.
T Consensus 192 -~~~~~~~~~v~~~ip 206 (245)
T 3ea0_A 192 -EIEKVIGRPISKRIP 206 (245)
T ss_dssp -HHHHHHTSCEEEEEC
T ss_pred -HHHHHhCCCeEEECC
Confidence 334456777665533
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.30 E-value=0.45 Score=37.74 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=47.8
Q ss_pred EEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-e-EEEEeeCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-T-IMLIGNKCDLAHR 80 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~Dl~~~ 80 (165)
+.+.++||+|...... +.. .. +..+|.+++|+|+..... .......+. ... | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 4578999999764221 111 11 236899999999876532 212122221 234 5 8889999997432
Q ss_pred CCCCHHHHHHHHHHcCCeEEEe
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEA 102 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v 102 (165)
. .....+....+.++.++
T Consensus 254 ~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 G----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----HHHHHHHHHSSCCEEEE
T ss_pred h----HHHHHHHHHHCCCEEEe
Confidence 1 12334555667775554
No 226
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.30 E-value=0.8 Score=32.18 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=53.3
Q ss_pred EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132 9 IKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 9 ~~~~l~Dt~G~-~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 87 (165)
+-+.+.|+++. ... .....+..+|.+|+++.++ ..+...+...+..+.... +.++.+|.|+.+-... .. ..+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~~-~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-KD-GDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-CH-HHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-hH-HHH
Confidence 44789999886 432 3345667899999999874 455666666666665532 4568899999985320 11 233
Q ss_pred HHHHHHHcCCeEE
Q 031132 88 GEQFAKEHGLIFM 100 (165)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (165)
......+++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4444444665543
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.90 E-value=1.5 Score=32.47 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=53.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEE-EEeeCCCCCCCCCCCHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM-LIGNKCDLAHRRAVSTE 86 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~i-vv~nK~Dl~~~~~~~~~ 86 (165)
+-+.++|+++...... ....+..+|.+|+|+.+ +..+...+...+..+..... .+.+++ +|.|+.+-. .
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 5578999987543222 23456789999999976 44566667666666655321 456654 899999831 2
Q ss_pred HHHHHHHHcCCeEEE
Q 031132 87 EGEQFAKEHGLIFME 101 (165)
Q Consensus 87 ~~~~~~~~~~~~~~~ 101 (165)
....+...++.+++.
T Consensus 228 ~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 228 EVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCcee
Confidence 344555566776543
No 228
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.85 E-value=0.68 Score=33.59 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=44.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
+-+.++|+++... ......+..+|.+|+++.++. .+...+...+..+.... .+.++.+|+|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 4578999987652 334455667999999999854 45566666666665443 3567889999994
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.80 E-value=1.9 Score=30.42 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=44.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+-+.++|+++... ......+..+|.+|+++.++ ..+...+...+..+... ......+|.|+.+-.
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSC
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC--CCceEEEEEecCCcc
Confidence 4578899987643 33455678899999999874 45566666666666544 224567889999853
No 230
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.60 E-value=2 Score=30.94 Aligned_cols=83 Identities=8% Similarity=-0.044 Sum_probs=51.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 88 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 88 (165)
+-+.++|+++... ......+..+|.+|+++.++ ..+...+...+..+... ....+.+|.|+.+-.... ...
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~~~----~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTLGIE----MAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTTTHH----HHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc--CCCeeEEEEccCCccccc----chH
Confidence 4578999997643 33445567899999999864 45566666666666554 224566889999853211 233
Q ss_pred HHHHHHcCCeEE
Q 031132 89 EQFAKEHGLIFM 100 (165)
Q Consensus 89 ~~~~~~~~~~~~ 100 (165)
..+....+.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 444455666643
No 231
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=91.58 E-value=1.5 Score=33.70 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=57.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-----------------CCC-----
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-----------------NAN----- 65 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-----------------~~~----- 65 (165)
.+-+.++|++... .......+..+|.+|+++.++ ..++..+...+..+.... ++.
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT 229 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence 4567899999654 344455567799999999874 444444444333332221 001
Q ss_pred ------------C-eEEEEeeCCCCCCCCC---------CCHHHHH-----------------------------HHHHH
Q 031132 66 ------------M-TIMLIGNKCDLAHRRA---------VSTEEGE-----------------------------QFAKE 94 (165)
Q Consensus 66 ------------~-p~ivv~nK~Dl~~~~~---------~~~~~~~-----------------------------~~~~~ 94 (165)
. ..=+|.|..|...... .-..... ..++.
T Consensus 230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~ 309 (361)
T 3pg5_A 230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD 309 (361)
T ss_dssp SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence 2 2447889998643211 0011111 12223
Q ss_pred cCCeEEEecCCC---------CCCHHHHHHHHHHHHHHHHhcCcccCC
Q 031132 95 HGLIFMEASAKT---------AQNVEEAFIKTAATIYKKIQDGVFDVS 133 (165)
Q Consensus 95 ~~~~~~~vSa~~---------~~~i~~l~~~l~~~i~~~~~~~~~~~~ 133 (165)
.+.|++.+++.+ ..+..+.|..|...|+++....+.+..
T Consensus 310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~ 357 (361)
T 3pg5_A 310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH 357 (361)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence 355677777644 558899999999999999888877654
No 232
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.56 E-value=1.9 Score=33.93 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=56.6
Q ss_pred EEEEEeCCCchh----hhhhhH-hhhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC----
Q 031132 10 KLQIWDTAGQES----FRSITR-SYYRGAAGALLVYDIT--RRETFNHLASWLEDARQHANANMTIMLIGNKCDLA---- 78 (165)
Q Consensus 10 ~~~l~Dt~G~~~----~~~~~~-~~~~~ad~vi~v~D~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~---- 78 (165)
.+.+||++|... ...... .-+...+.+++ ++.. ...... +. ..+.. .+.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~-la---~aL~~---~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDID-IA---KAISM---MKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHH-HH---HHHHH---TTCEEEEEECCHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHH-HH---HHHHh---cCCCeEEEEecCcccccCc
Confidence 367899998532 112221 12344466555 7775 322111 21 22222 368999999999963
Q ss_pred ---CCCCCCHHHHH----HHH----HHcC---CeEEEecC--CCCCCHHHHHHHHHHHH
Q 031132 79 ---HRRAVSTEEGE----QFA----KEHG---LIFMEASA--KTAQNVEEAFIKTAATI 121 (165)
Q Consensus 79 ---~~~~~~~~~~~----~~~----~~~~---~~~~~vSa--~~~~~i~~l~~~l~~~i 121 (165)
.-+.....+.. .+. .+.+ -.++.+|+ ..+.|++++.+.+.+.+
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 11222333322 222 1222 24788999 66778999888887654
No 233
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.79 E-value=1.8 Score=31.23 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=41.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH---HhcCCCCeEE-EEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR---QHANANMTIM-LIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~---~~~~~~~p~i-vv~nK~Dl 77 (165)
+-+.++|+++.... .....+..+|.+|+++.++. .+...+...+..+. ...+.+.+++ +|.|+.+-
T Consensus 112 yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 112 YDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp CSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 45789999976432 22344567999999999865 34444444444433 3223456764 89999985
No 234
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.55 E-value=0.92 Score=32.94 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCC-----CC
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAH-----RR 81 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~-----~~ 81 (165)
.+-+.++|+++...........+..+|.+|++..++. .+...+...+..+... +.+++ +|.|+.|... ..
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 203 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKS 203 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCccccccc
Confidence 4568899999764322222222236899999998764 3455555555555432 46666 8999987411 10
Q ss_pred CC-CHHHHHHHHHHcCCeEEE
Q 031132 82 AV-STEEGEQFAKEHGLIFME 101 (165)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~ 101 (165)
.+ .......+...++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 204 YIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CTTCCCCHHHHHHHTTCSEEE
T ss_pred ccccccHHHHHHHHcCCCeEE
Confidence 01 111234455567777654
No 235
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.76 E-value=1.4 Score=31.20 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=43.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
+-+.++|+++.... .....+..+|.+|+++.++ ..++..+......+.... -..+.++.|+.+
T Consensus 132 yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 45789999875433 4455668899999999874 455666666555444432 245788899998
No 236
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.13 E-value=0.016 Score=45.10 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=51.2
Q ss_pred EEEEeCCCchhhhh--------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 11 LQIWDTAGQESFRS--------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~--------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.++||||...... ....++ +..+.+++++++.....+..+.. +......+.|+++++||.|....
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence 57999999743221 122222 67899999999843211111100 11112246899999999997543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASAKTAQN 109 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~ 109 (165)
... ......+.+..+......++...++
T Consensus 290 ~~~-~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 290 TKL-EKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp EEG-GGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred ccH-HHHHHHHHHhcCCccCCCCchhhhh
Confidence 322 2223334455666655555544333
No 237
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.14 E-value=1.4 Score=31.53 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=44.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------ANMTIMLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl 77 (165)
+-+.++|+++... ......+..+|.+|++++++ ..+...+...+..+..... ....+.+|+|+.+-
T Consensus 114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 4578999987543 34555677899999999874 4556666665555543321 12467889999984
No 238
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.11 E-value=7.6 Score=27.85 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred EEEEEEeCCCchhhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeE-EEEeeCCCCCCCCCCCH
Q 031132 9 IKLQIWDTAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTI-MLIGNKCDLAHRRAVST 85 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~-ivv~nK~Dl~~~~~~~~ 85 (165)
+-+.++|++|......+. ......+|.+|+++.++ ..+...+...+..+..... .+.++ .+|.|+.+-. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 557899998864322221 22235799999999864 4566666666666655432 24454 6789998631 234
Q ss_pred HHHHHHHHHcCCeEE
Q 031132 86 EEGEQFAKEHGLIFM 100 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (165)
.....+...++.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 444555566676644
No 239
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.81 E-value=3.6 Score=30.18 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=40.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCeE-EEEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA---RQHANANMTI-MLIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i---~~~~~~~~p~-ivv~nK~Dl 77 (165)
+-+.++|+++...... ...+..+|.+|+++.++. .+...+...+..+ ....+.+.++ -+|.|+.|.
T Consensus 155 yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp CSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 4578999987654322 223446999999998753 3344444444333 3333345664 488999985
No 240
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.73 E-value=5.9 Score=31.27 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=45.1
Q ss_pred EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR 81 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 81 (165)
+.+.++||+|..... .+.. ..+..++.+++|+|+...... ......+... .+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence 457899999975432 1211 124478999999998754322 2222223222 33 34688999974322
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 031132 82 AVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (165)
. ....+....+.|+.+
T Consensus 257 --g--~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 --G--AALSIRHITGKPIKF 272 (433)
T ss_dssp --T--HHHHHHHHHCCCEEE
T ss_pred --H--HHHHHHHHHCCCeEE
Confidence 1 233445555666433
No 241
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=84.89 E-value=0.018 Score=44.82 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=47.6
Q ss_pred EEEEeCCCchhhhh--------hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132 11 LQIWDTAGQESFRS--------ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 80 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~--------~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 80 (165)
+.++||||...... ....+ .+..+.++|++++.....+..+.. +......+.|+++++||.|....
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence 67999999743221 11111 356789999998843211111100 11111246899999999997543
Q ss_pred CCCCHHHHHHHHHHcCCeEEEecC
Q 031132 81 RAVSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vSa 104 (165)
... ......+.+..+..++..++
T Consensus 289 ~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 289 TKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp EEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred ccH-HHHHHHHHHHhCCccCCCch
Confidence 322 22333344555655444443
No 242
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.32 E-value=12 Score=27.19 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred EEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCCCCH
Q 031132 9 IKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRAVST 85 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~ 85 (165)
+-+.++|++|......+ .......+|.+|+++.++ ..+...+...+..+..... .+.+ .-+|.|+.+.. ...
T Consensus 119 yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 193 (289)
T 2afh_E 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RED 193 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THH
T ss_pred CCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHH
Confidence 55789999875432222 122235799999999864 4556666555555554322 2455 45788998631 122
Q ss_pred HHHHHHHHHcCCeEE
Q 031132 86 EEGEQFAKEHGLIFM 100 (165)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (165)
.....+...++.+++
T Consensus 194 ~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 194 ELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHcCcccc
Confidence 334445555666644
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.79 E-value=3 Score=31.64 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=51.3
Q ss_pred EEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132 11 LQIWDTAGQESFRS-ITRS-----YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 84 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~-~~~~-----~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 84 (165)
+.+.||+|...... +... ..-..|-.++++|+.... ++......+.... ....++.||.|-...
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~---- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR---- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC----
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc----
Confidence 45799999743221 1111 112478899999977653 3333333343331 234677899995321
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 85 TEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
.-.........+.|+.+++ +|+++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2234455667789988876 5666544
No 244
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=80.49 E-value=4 Score=29.90 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=40.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDL 77 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl 77 (165)
+-+.++|+++..... ........+|.+|+|+.... .+...+...+..+... +.+++ +|+|+.|.
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence 347889998764321 12334457899999998754 3345555555554433 45655 88999985
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.05 E-value=9 Score=30.22 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=47.1
Q ss_pred EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+-+.+.||+|...... +.. ...-.+|.+++|+|+.... ++......+... .+ ..-+|.||.|-....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~--l~-i~GVIlTKlD~~~~~- 253 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK--VG-VTGLVLTKLDGDARG- 253 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--TC-CCEEEEESGGGCSSC-
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc--CC-ceEEEEeCcCCcccH-
Confidence 3478999999753211 111 1122589999999986432 222222333322 12 356688999963221
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 031132 83 VSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vS 103 (165)
..........+.|+.++.
T Consensus 254 ---g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 254 ---GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp ---HHHHHHHHHHCCCEEEEE
T ss_pred ---HHHHHHHHHHCCCEEEEe
Confidence 233445566788876664
No 246
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.36 E-value=0.84 Score=36.16 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=32.2
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--HHHHHHHHHcCCeEEEecCC
Q 031132 35 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--EEGEQFAKEHGLIFMEASAK 105 (165)
Q Consensus 35 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~vSa~ 105 (165)
+++|+.|....-+..++ .++..+ ..++|+|+|.||+|......+.. ..+.......|++++.+|..
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L----~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKL----DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHT----CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHH----hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 46677776654333321 122222 25789999999999753222111 11111122347777777753
No 247
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=78.44 E-value=3.4 Score=34.15 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=36.2
Q ss_pred EEEEEeCCCch-------------hhhhhhHhhhcCC-cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 10 KLQIWDTAGQE-------------SFRSITRSYYRGA-AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 10 ~~~l~Dt~G~~-------------~~~~~~~~~~~~a-d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.+.+.|.||.. ....+...++... .+++++.+.+....-.....+ +......+.+.++|+||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l---a~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM---AQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH---HHHHCSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH---HHHHhhcCCceEEEecch
Confidence 37789988532 2344555655554 555555554332221122222 222333467999999999
Q ss_pred CCCC
Q 031132 76 DLAH 79 (165)
Q Consensus 76 Dl~~ 79 (165)
|+..
T Consensus 225 Dlv~ 228 (608)
T 3szr_A 225 DLVD 228 (608)
T ss_dssp GGSS
T ss_pred hhcC
Confidence 9853
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.88 E-value=18 Score=27.00 Aligned_cols=85 Identities=22% Similarity=0.176 Sum_probs=47.2
Q ss_pred EEEEEeCCCchhhhh-hh------Hhhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESFRS-IT------RSYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~-~~------~~~~-----~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+.||+|...... +. ...+ ...+.+++|+|+... .+.+.. ...+... .+ ..-+|.||.|-
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D~ 261 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLDG 261 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCCC
Confidence 478899999732211 11 1111 247899999998743 222222 2233322 12 33456799996
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132 78 AHRRAVSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa 104 (165)
.... -.+..+....+.|+.+++.
T Consensus 262 ~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 TAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CSCT----THHHHHHHHHCCCEEEEEC
T ss_pred ccch----HHHHHHHHHHCCCEEEEeC
Confidence 4322 1355667778999777743
No 249
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=76.60 E-value=1.7 Score=32.04 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 44 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~ 44 (165)
+-+.++|+++.. .......+..+|.+|+++.++.
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 457899999875 3445667789999999998753
No 250
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.57 E-value=25 Score=26.41 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEEEEeCCCchhhhh-hhH------hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-eEEEEeeCC
Q 031132 9 IKLQIWDTAGQESFRS-ITR------SYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKC 75 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~-~~~------~~~-----~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-p~ivv~nK~ 75 (165)
+-+.++||+|...... +.. ..+ ..+|.+++|+|+... .+.+... ..+. ... ..-+|.||.
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~~----~~~~i~GvVltk~ 264 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEFS----KVADVSGIILTKM 264 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHHT----TTSCCCEEEEECG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHHh----hcCCCcEEEEeCC
Confidence 4578999999865321 111 111 247899999998743 2222221 1121 122 335788999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
|-.... -.+..+....+.|+.++. .|+++++
T Consensus 265 d~~~~~----g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 265 DSTSKG----GIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp GGCSCT----THHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCCCch----hHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 964322 144455667788876664 3444443
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.52 E-value=25 Score=25.96 Aligned_cols=85 Identities=20% Similarity=0.082 Sum_probs=46.8
Q ss_pred EEEEEEeCCCchhhhh--hhH----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS--ITR----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~--~~~----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.+.||||...... +.. ...-.+|.+++|+|+... .+ .......+.... ...-+|.||.|-...
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~-~~~~~~~~~~~~---~i~givlnk~d~~~~-- 252 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QE-ALSVARAFDEKV---GVTGLVLTKLDGDAR-- 252 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HH-HHHHHHHHHHHT---CCCEEEEECGGGCSS--
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HH-HHHHHHHHhhcC---CCCEEEEECCCCCcc--
Confidence 4578999997643211 111 011257888999997642 22 222222332221 134568899996432
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 031132 83 VSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vS 103 (165)
.-....+....+.|+.+++
T Consensus 253 --~g~~~~~~~~~~~pi~~i~ 271 (295)
T 1ls1_A 253 --GGAALSARHVTGKPIYFAG 271 (295)
T ss_dssp --CHHHHHHHHHHCCCEEEEC
T ss_pred --HHHHHHHHHHHCcCEEEEe
Confidence 1234456667789977765
No 252
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=73.21 E-value=17 Score=26.74 Aligned_cols=66 Identities=17% Similarity=0.039 Sum_probs=41.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+-+.++|++....... .......+|++|+|+.... .+...+...+..+.... ...+-+|+|+.|..
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 3478899987643221 2344567999999998754 33455555555555442 23456788999864
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.66 E-value=7.3 Score=28.96 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=47.6
Q ss_pred EEEEEEeCCCchhhhh--hh--Hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFRS--IT--RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~--~~--~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 82 (165)
+.+.+.||+|...... +. ...+. ..+.+++|+|++.. ..++..+...+.. .+ ..-++.||.|.....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~~- 255 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTSL- 255 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSCC-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccch-
Confidence 3578999999864322 11 12232 36788999988753 2334333332221 12 234567999974321
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 031132 83 VSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vS 103 (165)
..+.......++|+.+++
T Consensus 256 ---g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 ---GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---HHHHHHHHTCSCCCSEEC
T ss_pred ---hHHHHHHHHHCcCEEEEE
Confidence 244556667788865553
No 254
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=70.01 E-value=17 Score=28.16 Aligned_cols=83 Identities=19% Similarity=0.098 Sum_probs=47.1
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132 25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 104 (165)
Q Consensus 25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 104 (165)
+...+.-..--++++.+.+.. ++.. .+........|++++.||.|.. ..++...+. ..-.++++|+
T Consensus 216 il~~~~lt~kpv~~~~nv~ed----dl~d---~~~~~~~~~~p~i~v~nKid~~-----~~eele~l~--~~~~~~~is~ 281 (376)
T 4a9a_A 216 VMSEYRINSAEIAFRCDATVD----DLID---VLEASSRRYMPAIYVLNKIDSL-----SIEELELLY--RIPNAVPISS 281 (376)
T ss_dssp HHHHTTCCSEEEEECSCCCHH----HHHH---HHTTTTCEEECEEEEEECGGGS-----CHHHHHHHT--TSTTEEECCT
T ss_pred HHHHhcccCCCeeecccCCHH----HHHH---HHHHHHhhccceEEEEeccccc-----CHHHHHHHh--cccchhhhhh
Confidence 334444344556666666532 2211 1211111357999999999963 233333221 1224889999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 031132 105 KTAQNVEEAFIKTAATI 121 (165)
Q Consensus 105 ~~~~~i~~l~~~l~~~i 121 (165)
..+.|++.+...+.+.+
T Consensus 282 ~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 282 GQDWNLDELLQVMWDRL 298 (376)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHc
Confidence 99999988777665544
No 255
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=66.61 E-value=14 Score=26.94 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEE
Q 031132 32 GAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFME 101 (165)
Q Consensus 32 ~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 101 (165)
.+++.++++|... +-.-.+ ...+..+. .. .++++|++|+|.....+.. ...+.......++.++.
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 4688999999652 211111 22223222 13 8999999999975432211 11223334455666553
No 256
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=65.19 E-value=9 Score=30.33 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=33.1
Q ss_pred EEEEeCCCch--hhhhhh--------HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q 031132 11 LQIWDTAGQE--SFRSIT--------RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61 (165)
Q Consensus 11 ~~l~Dt~G~~--~~~~~~--------~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~ 61 (165)
..+||..|.+ +.+..+ ..++..+.+.++|+|.++. +......|+..+...
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3578988883 334444 5667778999999999986 344455555555443
No 257
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=64.14 E-value=29 Score=26.68 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=35.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh------hHHHHHHHHHHHHHhcCCCCe---EEEEeeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLASWLEDARQHANANMT---IMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~------s~~~~~~~~~~i~~~~~~~~p---~ivv~nK~D 76 (165)
+-+.|+|++.... ......+..+|.+|++..++... .+..+...+..+.... .+.+ ++.+.|+.+
T Consensus 248 yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 248 YDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEG-VEPRLSASIGFMSKMT 321 (403)
T ss_dssp CSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTT-CCCCCCEEEEEECC--
T ss_pred CCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcC-CCCceeEEEEEEeccC
Confidence 4578999987653 23344566899999999875431 1222333333333321 2222 455778887
No 258
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.68 E-value=31 Score=23.25 Aligned_cols=62 Identities=5% Similarity=-0.054 Sum_probs=38.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HANANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~---~~~~~~p~ivv~nK~D 76 (165)
+.+.+.|....+ ...+..+|++||........-...+..++..+.. ....++++.++++--.
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 345566654432 2345678999999987754434556666666543 1125788888888543
No 259
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=56.64 E-value=16 Score=25.27 Aligned_cols=74 Identities=9% Similarity=-0.062 Sum_probs=45.0
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
+...+..||++||+...-+..--..++.|+..+... ...++|+.++.+--.... ........+.....++..++
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCEEc
Confidence 445578999999999887755445667777766541 125789999887532211 11123345555556666543
No 260
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=54.02 E-value=13 Score=25.75 Aligned_cols=71 Identities=7% Similarity=0.064 Sum_probs=42.5
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH-HHHHHHHcCCe
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFAKEHGLI 98 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~ 98 (165)
+...+..||++||....-+..-...++.|+..+......++|++++.+- .-.. .....+. .+.....+++.
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~-~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSAR-HSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSST-TTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcc-hhhHHHHHHHHHHHHCCCE
Confidence 3445789999999998877554456666666654322267899888873 2211 1111122 44555566655
No 261
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=53.99 E-value=15 Score=25.11 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=40.5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH-HHHHHHHHcCCeEE
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE-EGEQFAKEHGLIFM 100 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 100 (165)
..+..+|++||....-...-...++.++..+......++|++++++ ..-... ..... ..+.+....|+.++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~-~~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAH-VLALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGG-GGHHHHTHHHHHHTTTCSEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcch-hhHHHHHHHHHHHHcCCEec
Confidence 4477899999999877644334455555544322225789999988 332221 11121 34555666676543
No 262
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=53.89 E-value=39 Score=22.75 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=40.5
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
...+..+|++||........-...++.++..+... ...++++.++++--...............++...++.++
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34567899999999876543334455555544321 125678888777543211111122344455556676644
No 263
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=53.84 E-value=30 Score=25.49 Aligned_cols=65 Identities=18% Similarity=0.051 Sum_probs=38.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLA 78 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 78 (165)
+-+.++|+++...... .......+|.+|+|+..... +...+...+..+... +.+ .-+|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA---GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT---TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC---CCCeEEEEEeCCccC
Confidence 3478899987643221 22344678999999986542 334444444444433 333 33678999863
No 264
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=52.75 E-value=14 Score=27.87 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=36.5
Q ss_pred HHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132 58 ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120 (165)
Q Consensus 58 i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~ 120 (165)
+.+......|++| ++|-|.. ++.....+++.+++++.++..+...+..+..+|...
T Consensus 73 ler~l~~~~P~II-ltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 73 MRKLCRPETPAII-VTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp HHHHCCTTCCCEE-ECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEE-EeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 3444434566665 5777653 345667788889999998888776666665554443
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=50.93 E-value=48 Score=26.76 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=48.1
Q ss_pred EEEEEeCCCchhhhh--h--hHhh---h-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 10 KLQIWDTAGQESFRS--I--TRSY---Y-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~--~--~~~~---~-----~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
.+.+.||+|...... + ...+ . ...+-+++++|++.... .......+... .++ ..+|+||.|-
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~--~~i-tgvIlTKLD~ 450 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEA--VGL-TGITLTKLDG 450 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHH--TCC-SEEEEECGGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhh--cCC-CEEEEEcCCC
Confidence 366899999842211 1 1111 1 12567899999876522 11223333333 223 3467899985
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132 78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 112 (165)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 112 (165)
... --.+..+...++.++.++. +|+++++
T Consensus 451 tak----gG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 451 TAK----GGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp CSC----CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred ccc----ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 321 1234455666788877653 3555544
No 266
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=48.24 E-value=37 Score=22.90 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=42.1
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
..+..+|++||....-...-...++.|+..+... ...++++.++++--...............++...++.++.
T Consensus 66 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 66 DDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 3467899999999876643334455555554221 1256788877765432111122334555566667776543
No 267
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=47.92 E-value=25 Score=24.26 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=38.7
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 98 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 98 (165)
+...+..||++||+..-.+..--..+++++.-+.+. .-.++|+.++.+-.-... ........+.....++..
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G-g~~a~~~Lr~vl~~lg~~ 136 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG-AALAQARLKNDLLHVGTV 136 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT-THHHHHHHHHHHHTTTCE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh-HHHHHHHHHHHHHHcCCE
Confidence 456688999999998766643223344444433221 115789988876443211 111233344444455543
No 268
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=47.48 E-value=38 Score=23.22 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=44.2
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
+...+..||++||+....+..-...++.++..+... ...++|+.++.+----.. ........+.....++..++
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEEc
Confidence 345578999999999877654445566666666542 126789988877432211 11223445555556676544
No 269
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=47.00 E-value=39 Score=23.47 Aligned_cols=54 Identities=6% Similarity=0.101 Sum_probs=34.8
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 031132 19 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCD 76 (165)
Q Consensus 19 ~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 76 (165)
........+..++++..+|+++...-..+- -..| ++.... ..++|+|+|-...+
T Consensus 66 e~tIKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 66 EKTLKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TTTHHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECCcc
Confidence 344555667778999999999976654442 2233 454444 36899999865533
No 270
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=46.59 E-value=37 Score=27.47 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHHHHH
Q 031132 56 EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS--AKTAQNVEEAFIKTAATI 121 (165)
Q Consensus 56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~l~~~l~~~i 121 (165)
..+......++|++|.+|+..-. .+...+.++.++.+.|+.+..+. ++=|+|-.++-+.+++.+
T Consensus 351 kHIen~~~fGvpvVVaiN~F~tD--T~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 351 VHVENLRKFNLPVVVALNRFSTD--TEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTC--CHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCeEEEEeCCCCC--CHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 33333333589999999998642 22223456677888898865444 445777777777666654
No 271
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=46.38 E-value=66 Score=21.78 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=39.0
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh--------cCCCCeEEEEeeCC
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH--------ANANMTIMLIGNKC 75 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~--------~~~~~p~ivv~nK~ 75 (165)
+++.|.....+.... ...+..||++||.+..-...--..++.|+..+... ...+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 455555543333222 34578999999999987654445677777765321 11567777776644
No 272
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=46.17 E-value=10 Score=25.41 Aligned_cols=74 Identities=7% Similarity=-0.089 Sum_probs=43.3
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
...+..+|++||....-+..-...++.++..+......++|+.++++--.-.. ........+..+...++.++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEec
Confidence 34577899999999877654444555555544221125789988876433211 112234555666677776543
No 273
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=42.13 E-value=35 Score=22.95 Aligned_cols=42 Identities=5% Similarity=-0.051 Sum_probs=26.6
Q ss_pred HhhhcCCcEEEEEEeC-----CChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 27 RSYYRGAAGALLVYDI-----TRRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~-----~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
...++.||++|.++|+ .|..+--++..-+. .++|++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A-------lgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA-------LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH-------TTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH-------CCCEEEEEEcCc
Confidence 3457899999999983 34443333422111 479999987653
No 274
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=41.91 E-value=31 Score=23.63 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=34.2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCC
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-------------ANANMTIMLIGNKC 75 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-------------~~~~~p~ivv~nK~ 75 (165)
...+..||++||.+..-...--..++.|+..+... ...+++++++.+--
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 34577899999999987765556677888877431 11467887776654
No 275
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=41.59 E-value=36 Score=25.85 Aligned_cols=49 Identities=12% Similarity=-0.098 Sum_probs=30.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 031132 8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59 (165)
Q Consensus 8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~ 59 (165)
.+.+.++|++.... ......+..+|.+++|..++ ..+...+...+..+.
T Consensus 259 ~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~ 307 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVV 307 (373)
T ss_dssp CCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHH
Confidence 45688999984432 23455678899999998764 444344444444443
No 276
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=41.45 E-value=25 Score=24.03 Aligned_cols=72 Identities=6% Similarity=-0.045 Sum_probs=45.1
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----------cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHc
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----------ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH 95 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 95 (165)
+...+..||++||....-...--..++.|+..+... ...++|++++.+--... ........+......
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g--~~~~~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGAS--PEEVFEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcc--hhHHHHHHHHHHHHc
Confidence 445678999999999877655455677777776531 12578888887665421 112234555566667
Q ss_pred CCeE
Q 031132 96 GLIF 99 (165)
Q Consensus 96 ~~~~ 99 (165)
|+..
T Consensus 139 G~~~ 142 (192)
T 3fvw_A 139 RMHL 142 (192)
T ss_dssp TCEE
T ss_pred CCee
Confidence 7653
No 277
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=41.08 E-value=33 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=12.3
Q ss_pred hhhHhhhcCCcEEEEEEeCCC
Q 031132 24 SITRSYYRGAAGALLVYDITR 44 (165)
Q Consensus 24 ~~~~~~~~~ad~vi~v~D~~~ 44 (165)
...+..+..+|++|.++|...
T Consensus 122 ~rn~~mvd~sD~liavyDg~~ 142 (181)
T 2nx2_A 122 QKNQFFIDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHHHHHHHSSEEEEECCTTT
T ss_pred HHHHHHHHHCCEEEEEEcCCC
Confidence 333444566777777776544
No 278
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=39.66 E-value=43 Score=22.41 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=28.0
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
..++.||++|..+|..+..+--++..-.. .++|++++.+..+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~a-------lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVA-------LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHH-------TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHH-------CCCEEEEEEcCCC
Confidence 45789999999998555554444432211 4799999866654
No 279
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=38.67 E-value=1.2e+02 Score=22.52 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=47.7
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEE-EEeeCCCCCCCCCCCHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM-LIGNKCDLAHRRAVSTEE 87 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~i-vv~nK~Dl~~~~~~~~~~ 87 (165)
-+.++|+++....... ...+..||.+|++..+ +..++..+...+..+..... .+.++. +|.|..+.. ..
T Consensus 165 D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~ 235 (314)
T 3fwy_A 165 DVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DE 235 (314)
T ss_dssp SEEEEEECCSSCCGGG-GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HH
T ss_pred ceEeeccCCcchhhhh-HhHHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hH
Confidence 4567887765322221 1235678999999876 45566667666666665443 334442 566766532 23
Q ss_pred HHHHHHHcCCeEE
Q 031132 88 GEQFAKEHGLIFM 100 (165)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (165)
...++++++.+++
T Consensus 236 v~~~a~~~~~~~l 248 (314)
T 3fwy_A 236 VDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHhCCeEE
Confidence 4556667776654
No 280
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=38.39 E-value=46 Score=22.43 Aligned_cols=40 Identities=3% Similarity=-0.040 Sum_probs=25.5
Q ss_pred hhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 29 YYRGAAGALLVYDIT--RRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.++.+|++|.++|.. |..+--++...+ . .++|++++.+-.
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~EiG~A~-----a--~gkPVi~~~~D~ 107 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEIGVAY-----A--KGIPVVALYTDS 107 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHHHHHH-----H--TTCCEEEECCCG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHHHHHH-----H--CCCEEEEEEcCc
Confidence 477999999999866 444433443222 1 478988875543
No 281
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=37.42 E-value=48 Score=22.22 Aligned_cols=74 Identities=5% Similarity=-0.003 Sum_probs=39.5
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
...+..+|++||........-...++.++..+... ...++|+.++++--.. .............+..+++.++.
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 34577899999998766543333455555444321 1256788877765432 11111223344445556666543
No 282
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=37.31 E-value=30 Score=23.25 Aligned_cols=72 Identities=3% Similarity=-0.089 Sum_probs=41.3
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
+...+..+|++||....-...--..++.|+..+.... .++|++++.+ -.. . ........+.++...|+.++.
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l-~gK~~~~~~~-G~~-~-~~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEW-HGKPALVVSY-GGH-G-GSKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTT-TTCEEEEEEE-ETT-T-THHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhc-CCCEEEEEEe-CCc-c-hhhHHHHHHHHHHHCCCEEcc
Confidence 3455789999999998876543345566665543222 5678887765 221 1 111223344555666776443
No 283
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=37.27 E-value=21 Score=24.19 Aligned_cols=72 Identities=11% Similarity=-0.046 Sum_probs=41.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
..+..+|++||....-...-...++.|+..+... ...++|++++.+--.-.. ........+.++...|+.++
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~ 142 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPL 142 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEEC
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEc
Confidence 4577899999998766543334566666666432 125789988887633211 11122344445555565543
No 284
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=36.81 E-value=47 Score=22.67 Aligned_cols=75 Identities=8% Similarity=0.021 Sum_probs=41.3
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (165)
...+..+|++||....-...-...++.|+..+... ...++++.++++--...............++...++.++.
T Consensus 73 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 73 PADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 34567899999998766533233455555554321 1256788777764432211122234455566666766543
No 285
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=36.46 E-value=81 Score=23.99 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=24.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC
Q 031132 9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 44 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~ 44 (165)
+-+.++|++..-.. .....+..+|.+|+++.++.
T Consensus 245 yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 245 YDFILVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp CSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred CCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 45789999876532 23344568999999998754
No 286
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=36.13 E-value=1e+02 Score=21.09 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=31.5
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q 031132 10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA 58 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i 58 (165)
.+.+.|.......... ...+..||++||.+..-...--..++.|+..+
T Consensus 49 ~v~~~dL~~~~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 49 DVRIVRADSDYDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp EEEEEESSSCCCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred EEEEEeCCccccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 4666666543333333 34578999999999987754445667777765
No 287
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=35.81 E-value=99 Score=20.80 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=36.8
Q ss_pred EEEEeCCCchh-hhhhhHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 11 LQIWDTAGQES-FRSITRSYYR--GAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 11 ~~l~Dt~G~~~-~~~~~~~~~~--~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
+.+-|+-+... ...+.. .++ ++|.+|+.=|..+.. ..+....++..+... +.|+++|.--.|.
T Consensus 9 ~~iSD~H~~~~~~~~~~~-~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQDA 75 (228)
T ss_dssp EEEECCTTCHHHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTTSC
T ss_pred EEEeeccCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCCCc
Confidence 56778876533 222222 223 799999999998765 445444445544332 4677666444454
No 288
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=34.75 E-value=66 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=23.9
Q ss_pred hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031132 29 YYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIG 72 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 72 (165)
.++.||++|.++|... ..+.-++...+ . .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiGyA~-----a--lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIGFMR-----A--MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHHHHH-----H--TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehhhHh-----h--CCCeEEEEE
Confidence 3778999999999654 33333443211 1 478999873
No 289
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=34.33 E-value=46 Score=22.01 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=40.4
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-----------cCCCCeEEEEeeCCCCCC-CCCCCHHHHHHHHHHc
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQH-----------ANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEH 95 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-----------~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~ 95 (165)
..+..+|++||.+..-...-...++.|+..+... ...+++++++.+--.-.. ...........++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 4577999999999887654344555666554321 014678888877432100 0111123344455566
Q ss_pred CCeEE
Q 031132 96 GLIFM 100 (165)
Q Consensus 96 ~~~~~ 100 (165)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 77644
No 290
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=33.17 E-value=39 Score=21.08 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=38.5
Q ss_pred hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132 29 YYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 100 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (165)
.+..+|++||........-... +..++..+.... .++++.++++--.. ...............+..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l-~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKL-KGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGC-SSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhc-CCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 3567899999887653221122 555555543322 57888888874321 11234455556666777644
No 291
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=32.10 E-value=60 Score=21.63 Aligned_cols=78 Identities=9% Similarity=-0.067 Sum_probs=41.8
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCC
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 107 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 107 (165)
..++.||++|..+|.-+..+--++..... .++|++++.+.-. ...++ ..+.- ......+.+-....
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~a-------lgkPV~~l~~~~~---~~~ls-~mi~G---~~~~~~~~~~~Y~~ 129 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVA-------LGKPILCLFRPQS---GRVLS-AMIRG---AADGSRFQVWDYAE 129 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHH-------TTCCEEEEECGGG---SCCCC-HHHHH---HCCSSSEEEEECCT
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHH-------cCCeEEEEEeCCc---cchhH-HHHcC---CCCCCeEEEEEecH
Confidence 34778999999998666554444433221 4789998776221 12232 11111 11224444544444
Q ss_pred CCHHHHHHHHHH
Q 031132 108 QNVEEAFIKTAA 119 (165)
Q Consensus 108 ~~i~~l~~~l~~ 119 (165)
.-+.++++....
T Consensus 130 ~el~~il~~f~~ 141 (152)
T 4fyk_A 130 GEVETMLDRYFE 141 (152)
T ss_dssp TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 292
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=30.58 E-value=55 Score=23.03 Aligned_cols=98 Identities=7% Similarity=-0.018 Sum_probs=53.5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEe-
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA- 102 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v- 102 (165)
..+..||++||....-...-...++.|+..+... ...++|++++.+--.- . ..........++...|+.++..
T Consensus 75 ~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v~~~ 152 (242)
T 1sqs_A 75 KELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQILHQV 152 (242)
T ss_dssp HHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeeeeEE
Confidence 3477999999999877654444566666665221 1246788887765321 1 1223445556666678764332
Q ss_pred cCCC--CCCHHHHHHHHHHHHHHHHhc
Q 031132 103 SAKT--AQNVEEAFIKTAATIYKKIQD 127 (165)
Q Consensus 103 Sa~~--~~~i~~l~~~l~~~i~~~~~~ 127 (165)
.+.. +....+-+..+.+.+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 153 SITNSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp EEEGGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred EEeccCChHHHHHHHHHHHHHHHHHhc
Confidence 1111 123444455555555555443
No 293
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.36 E-value=1.3e+02 Score=21.12 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=28.6
Q ss_pred EEEEEEeCCCchh-hhhhhHhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 9 IKLQIWDTAGQES-FRSITRSY-YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 9 ~~~~l~Dt~G~~~-~~~~~~~~-~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
+.+.+.++.+... ........ -.++|++|++- ..... .. +..+.. .++|+|++.+..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~~~~---~~---~~~l~~---~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 41 YHLVVTPHIHAKDSMVPIRYILETGSADGVIISK-IEPND---PR---VRFMTE---RNMPFVTHGRSDM 100 (288)
T ss_dssp CEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEES-CCTTC---HH---HHHHHH---TTCCEEEESCCCS
T ss_pred CEEEEecCCcchhHHHHHHHHHHcCCccEEEEec-CCCCc---HH---HHHHhh---CCCCEEEECCcCC
Confidence 4455555544332 22233322 26899999763 22111 11 122222 4789998876544
No 294
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=29.20 E-value=85 Score=20.86 Aligned_cols=40 Identities=15% Similarity=-0.086 Sum_probs=25.5
Q ss_pred hhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132 29 YYRGAAGALLVYDIT--RRETFNHLASWLEDARQHANANMTIMLIGNKC 75 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 75 (165)
.++.||++|.++|.. |..+.-++..... .++|++++..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A-------~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMELGYALS-------QGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHHHHHHH-------TTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHHHHHHH-------CCCeEEEEEcCC
Confidence 367999999999864 3333334432111 479998886543
No 295
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=29.13 E-value=34 Score=24.63 Aligned_cols=71 Identities=7% Similarity=-0.013 Sum_probs=42.9
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-----cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 98 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 98 (165)
+...+..||++||+...-+..-...++.++..+... ...++|+.++++--.. .........+.+...+++.
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~--gg~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS--QSFNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS--CCCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc--cHHHHHHHHHHHHHHCCCE
Confidence 345578899999999887754445566666655321 1157899888874322 1112234455555556655
No 296
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.88 E-value=87 Score=23.12 Aligned_cols=69 Identities=10% Similarity=0.219 Sum_probs=43.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 103 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++ -|-=.. ....++.+....++..-++.-+.-|
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiil-Yn~P~~-tg~~l~~~~~~~La~~pnIvgiKds 166 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV--EIPVVI-YTNPQF-QRSDLTLDVIARLAEHPRIRYIKDA 166 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC--SSCEEE-EECTTT-CSSCCCHHHHHHHHTSTTEEEEEEC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC--CCCEEE-EECccc-cCCCCCHHHHHHHHcCCCEEEEEcC
Confidence 37999999988777778888999998888774 578775 342211 1233556666555432233344444
No 297
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=34.02 E-value=13 Score=25.87 Aligned_cols=49 Identities=10% Similarity=-0.011 Sum_probs=31.0
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCeEEEEeeC
Q 031132 26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNK 74 (165)
Q Consensus 26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK 74 (165)
+...+..||++||+...-+..--..++.++..+... ...++|+.++++-
T Consensus 67 ~~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 344577899999998876654334455555555432 1256788887764
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.87 E-value=1.8e+02 Score=21.37 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=45.8
Q ss_pred EEEEeCCCchhhhh------------hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132 11 LQIWDTAGQESFRS------------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 78 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~------------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 78 (165)
+.+.||+|...... +.+......+.+++++|+...... ...+..+.... + ..+++.||.|-.
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDGT 260 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTSS
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCccc
Confidence 45889999642111 111223457888999998765432 22233333221 2 356778999864
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEec
Q 031132 79 HRRAVSTEEGEQFAKEHGLIFMEAS 103 (165)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vS 103 (165)
.... .+.......+.|+.+++
T Consensus 261 a~gg----~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 261 AKGG----VLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp CCCT----THHHHHHHHCCCEEEEE
T ss_pred cccc----HHHHHHHHHCCCeEEEe
Confidence 3221 22344556788877664
No 299
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.86 E-value=1e+02 Score=21.86 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=27.9
Q ss_pred EEEEEeCCCchhhhhhhHhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132 10 KLQIWDTAGQESFRSITRSYY-RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 76 (165)
Q Consensus 10 ~~~l~Dt~G~~~~~~~~~~~~-~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 76 (165)
.+.+.++.+.+.......... .++|++|++-...+.. .+..+.. .++|+|++....+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 42 DLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPEDF-------RLQYLQK---QNFPFLALGRSHL 99 (294)
T ss_dssp EEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSCH-------HHHHHHH---TTCCEEEESCCCC
T ss_pred EEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCChH-------HHHHHHh---CCCCEEEECCCCC
Confidence 344444433333333333333 4789988864332221 1122222 4789998876543
No 300
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.43 E-value=53 Score=22.02 Aligned_cols=73 Identities=4% Similarity=0.026 Sum_probs=43.3
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCCCCCCC--CCCCHHHHHHHH
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQH-------------ANANMTIMLIGNKCDLAHR--RAVSTEEGEQFA 92 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-------------~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~ 92 (165)
..+..+|++||.+..-...--..++.|+..+... ...+++++++.+--.-... ........+.++
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l 161 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL 161 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence 4577899999999877654345567777776521 1246788888764432111 112233345566
Q ss_pred HHcCCeEE
Q 031132 93 KEHGLIFM 100 (165)
Q Consensus 93 ~~~~~~~~ 100 (165)
...|+..+
T Consensus 162 ~~~G~~~~ 169 (201)
T 1t5b_A 162 GFIGITDV 169 (201)
T ss_dssp HHTTCCCE
T ss_pred hhcCccee
Confidence 66777643
No 301
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=27.01 E-value=1.5e+02 Score=20.04 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=46.4
Q ss_pred EEEEEEeCCCchhhh----hhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132 9 IKLQIWDTAGQESFR----SITRSYYRGAA-GALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 82 (165)
Q Consensus 9 ~~~~l~Dt~G~~~~~----~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 82 (165)
+-+.+.|++|..... ..........+ .+|+|.... ..+...+...+..+.. .+.+ .-+|.|+.|.. ..
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~~--~~ 182 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH---AGLTLAGWVANDVTPP--GK 182 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH---TTCCEEEEEEECCSSC--CT
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCCc--hh
Confidence 447789998654311 11222222222 477777764 3455666555555542 3455 44789999853 12
Q ss_pred CCHHHHHHHHHHcCCeEEE
Q 031132 83 VSTEEGEQFAKEHGLIFME 101 (165)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (165)
........+...++.+++.
T Consensus 183 ~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 183 RHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp THHHHHHHHHHHSSSCEEE
T ss_pred hHHHHHHHHHHHcCCCEEE
Confidence 2233344445556777654
No 302
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=26.89 E-value=33 Score=27.95 Aligned_cols=68 Identities=10% Similarity=-0.051 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132 54 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123 (165)
Q Consensus 54 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~ 123 (165)
+...+......++|++|.+|+..-.. +...+.++.++.+.|+.+..+=++=|+|-.++-+.+++.+-+
T Consensus 363 L~kHien~~~fGvpvVVaiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 363 LEKHIENIGKFGVPAVVAINAFPTDT--EAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCTTCC--HHHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 33444444446899999999986421 112233445555666655433345577888887777776643
No 303
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=26.58 E-value=87 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=30.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 131 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIII 131 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999999988777778888989998887764 678775
No 304
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=26.25 E-value=87 Score=22.93 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=30.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVL 131 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 37999999988777778888988998887764 578775
No 305
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=25.57 E-value=87 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=30.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-....+.+.+.+..++..+.... +.|+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST--PLPVML 143 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999999988777777888888888887763 578775
No 306
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.56 E-value=95 Score=22.80 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.5
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-....+ .+.+.+..++..+.... +.|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 128 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYL 128 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEE
Confidence 378999999887777 78888999998887764 578775
No 307
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=25.45 E-value=62 Score=22.25 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=33.4
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---------cCCCCeEEEEeeCC
Q 031132 27 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---------ANANMTIMLIGNKC 75 (165)
Q Consensus 27 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~ 75 (165)
...+..||++||.+..-...--..++.|+..+... ...+++++++.+--
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G 110 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLG 110 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEES
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCC
Confidence 34578999999999987655455677788776431 11467777776644
No 308
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.14 E-value=95 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=30.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 147 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICL 147 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 37999999988777777888888888887764 678775
No 309
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=24.95 E-value=97 Score=22.69 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=30.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++=
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 133 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLILY 133 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37999999987766677788888888887774 6787753
No 310
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=24.83 E-value=95 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=31.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 71 (165)
.++|+++++-....+.+.+.+..++..+.... +.|+++=
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 47999999987777777788888998888774 6787763
No 311
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=24.60 E-value=72 Score=23.09 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=32.9
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCCC
Q 031132 30 YRGAAGALLVYDITRRETFNHLASWLEDARQH-------------ANANMTIMLIGNKCD 76 (165)
Q Consensus 30 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-------------~~~~~p~ivv~nK~D 76 (165)
+..||+|||.+..-...--..++.|+..+... ...+++++++.+--.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 77899999999987754445677788776431 114678888776443
No 312
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=24.44 E-value=1.8e+02 Score=20.10 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=24.0
Q ss_pred EEEEeCCCchh-hhhhhHhh-hcCCcEEEEEEeCCChhh
Q 031132 11 LQIWDTAGQES-FRSITRSY-YRGAAGALLVYDITRRET 47 (165)
Q Consensus 11 ~~l~Dt~G~~~-~~~~~~~~-~~~ad~vi~v~D~~~~~s 47 (165)
+.+-|+-+... +..+.... -..+|.+|++=|..+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 56788876533 33333322 247899999999988543
No 313
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=24.42 E-value=1e+02 Score=22.71 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE----eeCCCC
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI----GNKCDL 77 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv----~nK~Dl 77 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++= .++.++
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l 149 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMIIYNVPGRTVVSM 149 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHSSCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEECCchhccCC
Confidence 37899999987767777788888888887774 6787764 245555
No 314
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.98 E-value=90 Score=22.89 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=29.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 132 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT--DLPQIL 132 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 37899999987777777888888888887663 578775
No 315
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=23.81 E-value=2.2e+02 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.3
Q ss_pred eCCEEEEEEEEeCCCchh
Q 031132 4 IDNKPIKLQIWDTAGQES 21 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~ 21 (165)
++|+.+.+.+.|+.+...
T Consensus 42 i~G~~i~l~~~D~~~~~~ 59 (374)
T 3n0x_A 42 LDGRKIVVITKDDQSKPD 59 (374)
T ss_dssp ETTEEEEEEEEECTTCHH
T ss_pred cCCEEEEEEEecCCCCHH
Confidence 678999999999988754
No 316
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=23.64 E-value=90 Score=23.11 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT--DLGIVV 143 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 38999999988777777888888888887663 578775
No 317
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=23.60 E-value=95 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-....+.+.+.+..++..+.... +.|+++
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 162 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSV--TLPVML 162 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 38999999988777778888888888887763 578775
No 318
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=22.95 E-value=85 Score=23.37 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=30.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
.++|+++++-....+.+.+.+..++..+.... +.|+++ -|
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil-Yn 144 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSII-YF 144 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEEE-EE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE-Ee
Confidence 37999999987777777888888888887764 577664 45
No 319
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.69 E-value=92 Score=23.05 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=37.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEe----eCCCCCCCCCCCHHHHHHHH
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIG----NKCDLAHRRAVSTEEGEQFA 92 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~----nK~Dl~~~~~~~~~~~~~~~ 92 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++=- ++.++ +.+....++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l------~~~~~~~La 166 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT--ELPMLLYDIPGRSAVPI------EPDTIRALA 166 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC--SSCEEEEECHHHHSSCC------CHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCCC------CHHHHHHHh
Confidence 37999999987777777888888888887764 68887631 34554 455555555
No 320
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=22.63 E-value=87 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=30.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 165 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAI 165 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 38999999887777777888888888887764 578775
No 321
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.51 E-value=2e+02 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.6
Q ss_pred eCCEEEEEEEEeCCCchhh
Q 031132 4 IDNKPIKLQIWDTAGQESF 22 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~~ 22 (165)
|+|+++++.+.|+.+....
T Consensus 44 i~Gr~ielv~~D~~~~p~~ 62 (353)
T 4gnr_A 44 IDGKQIEVVDKDNKSETAE 62 (353)
T ss_dssp BTTBEEEEEEEECTTCHHH
T ss_pred CCCeEEEEEEecCCCCHHH
Confidence 5789999999999887543
No 322
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=22.32 E-value=1.3e+02 Score=22.87 Aligned_cols=66 Identities=6% Similarity=-0.107 Sum_probs=40.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH-cCCe
Q 031132 29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLI 98 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~ 98 (165)
.+..+|++||........-...++.++..+..... .++++.++++--.. . -.......++.. .|+.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~---~a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGWS-N---RAVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESSS-C---CHHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCCC-c---hhHHHHHHHHHhhcCcE
Confidence 46689999999876654333446666666554333 46788888775332 1 134455566666 6654
No 323
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.32 E-value=91 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=30.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 131 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI--DIPIIV 131 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 37999999988777778888988888887764 578775
No 324
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.18 E-value=90 Score=23.26 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=42.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEe----eCCCCCCCCCCCHHHHHHH-HHHcCCeEEEec
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIG----NKCDLAHRRAVSTEEGEQF-AKEHGLIFMEAS 103 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~----nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~vS 103 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++=- ++.+ ++.+....+ +..-++.-+.-|
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~------l~~~~~~~L~a~~pnIvgiKds 187 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI--GVPVMLYNNPGTSGID------MSVELILRIVREVDNVTMVKES 187 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCC------CCHHHHHHHHHHSTTEEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCcchhCcC------CCHHHHHHHHhcCCCEEEEECC
Confidence 37899999887767777888999998888774 57877531 2333 455556665 332344444444
No 325
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.09 E-value=89 Score=19.48 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=36.8
Q ss_pred hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeE
Q 031132 29 YYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIF 99 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 99 (165)
.+..+|.++|........-.. .+..++..+... ..++++.++++--.. . ..............|+.+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCEE
Confidence 356789998888754322111 344455554433 257888888874321 1 122344555566666653
No 326
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=22.06 E-value=95 Score=22.74 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=30.1
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-....+ .+.+.+..++..+.... +.|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 128 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS--SHSLYI 128 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 478999999877777 77888888888887764 578775
No 327
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=21.85 E-value=1.7e+02 Score=21.62 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=38.5
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132 11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 77 (165)
Q Consensus 11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 77 (165)
+.+-|+-+.... + .+..+|++|+.=|.++.....++...+..+... ...++++|.--.|.
T Consensus 63 ~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l--~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 63 VCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL--PYEYKIVIAGNHEL 122 (296)
T ss_dssp EEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS--CCSEEEECCCTTCG
T ss_pred EEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC--CCCeEEEEcCCccc
Confidence 567777765431 1 346899999999999876666665555555443 23456666555564
No 328
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=21.81 E-value=96 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.2
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-....+ .+.+.+..++..+.... +.|+++
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 127 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV--SIPVFL 127 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 489999999877777 77888888888887764 578775
No 329
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.80 E-value=90 Score=22.91 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=37.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE----eeCCCCCCCCCCCHHHHHHHHH
Q 031132 32 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI----GNKCDLAHRRAVSTEEGEQFAK 93 (165)
Q Consensus 32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv----~nK~Dl~~~~~~~~~~~~~~~~ 93 (165)
++|+++++-..-.+.+.+.+..++..+.... +.|+++= .++.++ +.+....++.
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilYn~P~~tg~~l------~~~~~~~La~ 154 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVLYNVPSRTNMTI------EPETVEILSQ 154 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEEEECHHHHSCCC------CHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC------CHHHHHHHhc
Confidence 8999999987767777888888998887764 6788753 134444 4555555554
No 330
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=21.67 E-value=90 Score=22.91 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=30.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... +.|+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiil 135 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET--GSNMIV 135 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CCCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 38999999988777777888888888887764 467765
No 331
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=21.47 E-value=2.4e+02 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.0
Q ss_pred eCCEEEEEEEEeCCCchh
Q 031132 4 IDNKPIKLQIWDTAGQES 21 (165)
Q Consensus 4 i~~~~~~~~l~Dt~G~~~ 21 (165)
++|+.+.+.+.|+.+...
T Consensus 40 i~G~~i~l~~~D~~~~~~ 57 (375)
T 3i09_A 40 VNGKPIEVVYADHQNKAD 57 (375)
T ss_dssp ETTEEEEEEEEECTTCHH
T ss_pred CCCeEEEEEEecCCCCHH
Confidence 578899999999988654
No 332
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=20.89 E-value=1.4e+02 Score=18.60 Aligned_cols=42 Identities=5% Similarity=0.026 Sum_probs=24.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132 28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 73 (165)
Q Consensus 28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 73 (165)
..+++++++|++.......+- -+. .++......++|++.|--
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~-wv~---~EI~~A~~~gkpIigV~~ 75 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRD-EIL---GAVDLARKSSKPIITVRP 75 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHH-HHH---HHHHHHTTTTCCEEEECC
T ss_pred CccccCCEEEEEeCCCcCCCh-HHH---HHHHHHHHcCCCEEEEEc
Confidence 346789999999987653221 111 123333336889887733
No 333
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.60 E-value=96 Score=22.91 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=30.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEE
Q 031132 31 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 70 (165)
Q Consensus 31 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 70 (165)
.++|+++++-..-.+.+.+.+..++..+.... .+.|+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~~lPiil 143 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-DGLPMVV 143 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-CCCCEEE
Confidence 38999999988777778888988888887764 1278775
No 334
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=20.17 E-value=1.1e+02 Score=21.46 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=32.7
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCCC
Q 031132 29 YYRGAAGALLVYDITRRETFNHLASWLEDARQH-------------ANANMTIMLIGNKCD 76 (165)
Q Consensus 29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~-------------~~~~~p~ivv~nK~D 76 (165)
.+..||++||.+..-...--..++.|+..+... ...+++++++.|--.
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 377899999999987654445677777776321 114678888766554
Done!