BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031133
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480 OS=Arabidopsis thaliana
          GN=At1g66480 PE=1 SV=1
          Length = 225

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 1  MGNCLMLEEKVIKVMKTDGKILEYKAPMKVQDVLAEFAGHAISDSFPEIRH-------LM 53
          MGN + ++ K  KVMK DG+    K P+  ++V A++ G+ + DS   ++H       L 
Sbjct: 1  MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDS-QAVKHFGVRSKPLE 59

Query: 54 PDFKLLGGNLYFLVPVP 70
          P+  L     YFLV +P
Sbjct: 60 PNQTLKPKKTYFLVELP 76


>sp|Q9ZE61|RS2_RICPR 30S ribosomal protein S2 OS=Rickettsia prowazekii (strain Madrid E)
           GN=rpsB PE=3 SV=1
          Length = 296

 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 11  VIKVMKTDGKILEYKAPMKVQDVLAEFAGHAISDSFPEIRHLMPDFKLLGGNLYFLVPVP 70
           + + +K DGKIL     ++  D++AE+A         +      + + LGG L     + 
Sbjct: 60  IYETVKKDGKILFVSTKIQASDIIAEYA--------EKCGQYYVNNRWLGGMLTNWKTIA 111

Query: 71  LPSPKVEKKKVRFSEEEAR 89
               K+EK +     EEAR
Sbjct: 112 CSIEKLEKLEKTLESEEAR 130


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,381,895
Number of Sequences: 539616
Number of extensions: 2600396
Number of successful extensions: 5371
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5366
Number of HSP's gapped (non-prelim): 15
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)