BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031135
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LKX|A Chain A, Human Nac Dimerization Domain
Length = 66
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGP 106
VN I IEEVN+F + VI F NPKVQAS+AANT+ ++G +TK+L ++LP I+NQLG
Sbjct: 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGA 60
Query: 107 DNLDNL 112
D+L +L
Sbjct: 61 DSLTSL 66
>pdb|3MCB|B Chain B, Crystal Structure Of Nac Domains Of Human Nascent
Polypeptide- Associated Complex (Nac)
Length = 58
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104
VN I IEEVN+F + VI F NPKVQAS+AANT+ ++G +TK+L ++LP I+NQL
Sbjct: 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 17 GKGS----VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPK 72
GKG+ ++++ H +T + +IG+ A IE N D++V+ + K
Sbjct: 17 GKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEK 76
Query: 73 VQASIAANTWVVSGAPQTKKLQDILPGIINQLG 105
+ N +V+ G P+T + L I++++G
Sbjct: 77 FDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIG 109
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic
Initiation Factor 5 (Eif5)
Length = 170
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 69 LNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104
L + Q + + ++V+G+ + KLQD+L G I +
Sbjct: 61 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKF 96
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human
Eukaryotic Translation Initiation Factor 5
Length = 157
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 69 LNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104
L + Q + + ++V+G+ + KLQD+L G I +
Sbjct: 68 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKF 103
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 78 AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
AA W+++GA LQ + GII G N DN+ K+ EQF+
Sbjct: 1587 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1622
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 78 AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
AA W+++GA LQ + GII G N DN+ K+ EQF+
Sbjct: 1587 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1622
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 78 AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
AA W+++GA LQ + GII G N DN+ K+ EQF+
Sbjct: 1388 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1423
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 46 IGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLG 105
+G+ A +++ N+ D+V I ++ ++ +++ G P+T D L ++ LG
Sbjct: 45 LGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLG 104
Query: 106 P--DNLDNLRKLAEQFQKQ 122
D + N++ E+ K+
Sbjct: 105 KKLDYVLNIKVEQEELMKR 123
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 4 EKLMKMAGAVRTGGKGSVRRKKKA 27
EKL ++ ++ TG G+V+RKKKA
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKA 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,366,591
Number of Sequences: 62578
Number of extensions: 165547
Number of successful extensions: 310
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 28
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)