Query 031135
Match_columns 165
No_of_seqs 130 out of 307
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lkx_A Transcription factor BT 100.0 6.4E-35 2.2E-39 203.5 6.3 65 48-112 1-66 (66)
2 3mcb_B Transcription factor BT 100.0 4.4E-31 1.5E-35 180.0 6.1 57 48-104 1-58 (58)
3 3mce_A Nascent polypeptide-ass 99.8 1.7E-21 5.8E-26 133.9 2.8 54 41-94 6-60 (61)
4 3mcb_A Nascent polypeptide-ass 99.8 2.8E-21 9.5E-26 129.9 3.8 52 42-93 1-53 (54)
5 1tr8_A Conserved protein (MTH1 99.6 4.5E-16 1.5E-20 116.0 3.5 53 41-93 2-58 (102)
6 1eej_A Thiol:disulfide interch 41.6 44 0.0015 25.5 5.2 42 36-87 2-50 (216)
7 3j21_Y 50S ribosomal protein L 23.8 31 0.001 26.6 1.5 56 33-98 13-69 (155)
8 1hym_A CMTI-V, hydrolyzed cucu 22.7 34 0.0011 21.4 1.3 24 139-163 8-32 (45)
9 1otr_A Protein CUE2; protein-p 21.7 17 0.00058 23.1 -0.3 13 88-100 6-18 (49)
10 2fpn_A YWMB; structural genomo 21.4 1.5E+02 0.005 23.9 5.2 53 36-88 144-210 (216)
No 1
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=203.47 Aligned_cols=65 Identities=57% Similarity=0.911 Sum_probs=62.3
Q ss_pred CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031135 48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL 112 (165)
Q Consensus 48 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L 112 (165)
|++|+||+||||||+| +||||+|||||||+++|||||||++++|+|+||||+||+|||||+|++|
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~qlG~d~l~~l 66 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL 66 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGGGTTGGGGGCCTTHHHHC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHHHChhhhhccChhhhhcC
Confidence 5799999999999999 9999999999999999999999999999999999999999999999875
No 2
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=179.99 Aligned_cols=57 Identities=58% Similarity=0.914 Sum_probs=55.8
Q ss_pred CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhcc
Q 031135 48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104 (165)
Q Consensus 48 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lte~lP~Il~QL 104 (165)
|++|+||+||||||+| +||||+|||||||+++|||+|||++++|+|+||||+||+||
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e~lP~Il~ql 58 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGGGTTGGGGGC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHHHChhhhhcC
Confidence 5799999999999999 99999999999999999999999999999999999999997
No 3
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.82 E-value=1.7e-21 Score=133.87 Aligned_cols=54 Identities=22% Similarity=0.470 Sum_probs=48.9
Q ss_pred HHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhh
Q 031135 41 STLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQ 94 (165)
Q Consensus 41 ~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lt 94 (165)
++|+|||+++|+||+||||||++ .+|||++|+||+|+++|||||||+++.++++
T Consensus 6 kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~ 60 (61)
T 3mce_A 6 PEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60 (61)
T ss_dssp CCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC
T ss_pred HHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCC
Confidence 46999999999999999999999 9999999999999999999999999999875
No 4
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.82 E-value=2.8e-21 Score=129.90 Aligned_cols=52 Identities=23% Similarity=0.494 Sum_probs=50.1
Q ss_pred HHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchh
Q 031135 42 TLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKL 93 (165)
Q Consensus 42 ~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~l 93 (165)
+|+|||+++||||+||||||++ .+|||++|+||+|+++|||||||+++.+++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~ 53 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDL 53 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEEC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccC
Confidence 4899999999999999999999 999999999999999999999999999886
No 5
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.59 E-value=4.5e-16 Score=116.01 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=43.0
Q ss_pred HHHhhhCC--ccCCCccceeeeecCEEEEeeCCeeee--eecCCeEEEecccccchh
Q 031135 41 STLKRIGV--NAIPAIEEVNIFKDDVVIQFLNPKVQA--SIAANTWVVSGAPQTKKL 93 (165)
Q Consensus 41 ~~LkKLg~--~~I~gIeEVnmfk~d~vihF~nPkVqa--S~~aNTfvV~G~~~~K~l 93 (165)
.+|+|||+ ++|+||+||+||++|.+|||++|+||+ |+++|||+|||+++++++
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~ 58 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSL 58 (102)
T ss_dssp --------CCEEECCCCEEEEECSSEEEEEESCEEEEEEETTEEEEEEESCEEEEEE
T ss_pred chHHHcCCCceeCCCcEEEEEEeCCEEEEECCCEEEEEcCCCCcEEEEEcCceeecc
Confidence 35999999 899999999999999999999999997 899999999999999976
No 6
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=41.63 E-value=44 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=25.3
Q ss_pred cHHHHHHHhhhCC-------ccCCCccceeeeecCEEEEeeCCeeeeeecCCeEEEecc
Q 031135 36 DKRLQSTLKRIGV-------NAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGA 87 (165)
Q Consensus 36 DKKlq~~LkKLg~-------~~I~gIeEVnmfk~d~vihF~nPkVqaS~~aNTfvV~G~ 87 (165)
+..++.+|.++|+ .+++|+-||.+ ++.++ |.+ ...-|+|.|.
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~~~-------y~~-~dg~~~i~G~ 50 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSGVL-------YIT-DDGKHIIQGP 50 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTEEE-------EEE-TTSCEEEESC
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCeEE-------EEc-CCCCEEEEee
Confidence 4567777877665 46778888776 32322 222 2345777775
No 7
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.84 E-value=31 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=43.0
Q ss_pred CcccHHHHHHHhhhCCccCCCccceeeeecCEEEEeeCCeeeeeec-CCeEEEecccccchhhhhhh
Q 031135 33 TTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIA-ANTWVVSGAPQTKKLQDILP 98 (165)
Q Consensus 33 ~~dDKKlq~~LkKLg~~~I~gIeEVnmfk~d~vihF~nPkVqaS~~-aNTfvV~G~~~~K~lte~lP 98 (165)
..--++.+.+|+-||+..|.- .|++=.+|.+..-+. -.-||..|++..+.+.||+-
T Consensus 13 ig~~~~~r~tL~~LgL~ki~~----------~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~ 69 (155)
T 3j21_Y 13 VNVKRPVRDTLAMLRLHRVNH----------CVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIR 69 (155)
T ss_dssp TTCCHHHHHHHHHTTCCSTTE----------EEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcCCC----------EEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHH
Confidence 345678999999999987754 677777776655443 46789999999999999864
No 8
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=22.69 E-value=34 Score=21.39 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=17.5
Q ss_pred CCcccCCCCCChhHHhhc-cccCCCC
Q 031135 139 DEVPELVAGETFEAAAEE-KTEKPDA 163 (165)
Q Consensus 139 ddVPdLV~genFde~sk~-e~~~~~~ 163 (165)
..-|+|| |.+.++|... +.+.||.
T Consensus 8 ~sWPELV-G~~~~~A~~~I~~e~P~v 32 (45)
T 1hym_A 8 SSWPHLV-GVGGSVAKAIIERQNPNV 32 (45)
T ss_dssp SBCCCCT-TSCHHHHHHHHHHHCTTC
T ss_pred CcChhhc-CCcHHHHHHHHHHHCCCC
Confidence 3589999 7899988764 5666653
No 9
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=21.72 E-value=17 Score=23.12 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=10.3
Q ss_pred cccchhhhhhhhh
Q 031135 88 PQTKKLQDILPGI 100 (165)
Q Consensus 88 ~~~K~lte~lP~I 100 (165)
.+.+.|.||||++
T Consensus 6 ~~v~~L~EMFP~~ 18 (49)
T 1otr_A 6 SKLSILMDMFPAI 18 (49)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCC
Confidence 3556899999987
No 10
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=21.39 E-value=1.5e+02 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=33.6
Q ss_pred cHHHHHHHhhhCCccCCCccceeee-----ecC--EEEEeeCC--eeeeeecC-----CeEEEeccc
Q 031135 36 DKRLQSTLKRIGVNAIPAIEEVNIF-----KDD--VVIQFLNP--KVQASIAA-----NTWVVSGAP 88 (165)
Q Consensus 36 DKKlq~~LkKLg~~~I~gIeEVnmf-----k~d--~vihF~nP--kVqaS~~a-----NTfvV~G~~ 88 (165)
++++...|++|+++.+.++.+.+|+ ... ..|....= -||.++.. .|||.-|.|
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~i~~~~~k~NlqvAlR~~~~~~kT~I~iGTP 210 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTP 210 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCEEETTEEECEEEEEEC------CEEEEESS
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhHhhcCCeEEEEEEEEEecCCCCcEEEEEecc
Confidence 6788889999999999999999984 222 22333322 35666544 588888866
Done!