Query 031135
Match_columns 165
No_of_seqs 130 out of 307
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 15:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031135.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031135hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eeja2 d.17.3.1 (A:1-60) Disu 76.3 2.8 0.0002 26.1 5.2 43 35-87 1-50 (60)
2 d1vqow1 d.59.1.1 (W:1-154) Arc 55.3 2.8 0.0002 30.6 2.2 54 35-98 13-67 (154)
3 d2fpna1 d.129.10.1 (A:1-214) H 41.3 20 0.0015 27.2 5.3 53 36-88 144-210 (214)
4 d2nrqa1 d.77.1.2 (A:4-144) Hyp 40.1 18 0.0013 25.5 4.6 71 31-114 10-81 (141)
5 d1whya_ d.58.7.1 (A:) Putative 33.7 26 0.0019 22.0 4.2 52 13-71 7-63 (97)
6 d2r2za1 d.145.1.4 (A:5-88) Put 30.9 18 0.0013 22.8 2.9 39 74-112 3-41 (84)
7 d2plia1 d.145.1.4 (A:5-88) Unc 30.7 18 0.0013 22.9 2.9 30 71-101 3-32 (84)
8 d1t3ba2 d.17.3.1 (A:2-60) Disu 28.5 20 0.0014 21.9 2.7 29 49-87 21-49 (59)
9 d2o1ra1 d.145.1.4 (A:1-78) Hyp 26.8 16 0.0012 22.8 2.1 35 78-112 4-38 (78)
10 d2p13a1 d.145.1.4 (A:431-515) 24.9 21 0.0016 22.4 2.5 36 77-112 8-45 (85)
11 d1pyya2 d.11.1.1 (A:693-750) P 24.3 15 0.0011 21.9 1.4 16 139-155 2-17 (58)
12 d2rk5a1 d.145.1.4 (A:5-88) Put 23.1 23 0.0017 22.0 2.4 36 77-112 3-38 (84)
13 d2o3ga1 d.145.1.4 (A:180-255) 20.2 14 0.001 23.0 0.7 19 80-98 1-19 (76)
No 1
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.33 E-value=2.8 Score=26.06 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=29.5
Q ss_pred ccHHHHHHHhhhCCc-------cCCCccceeeeecCEEEEeeCCeeeeeecCCeEEEecc
Q 031135 35 DDKRLQSTLKRIGVN-------AIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGA 87 (165)
Q Consensus 35 dDKKlq~~LkKLg~~-------~I~gIeEVnmfk~d~vihF~nPkVqaS~~aNTfvV~G~ 87 (165)
||.-++..|.++|++ ||||+-||.+ ++.++. .| ....|+|.|+
T Consensus 1 dea~i~~~L~~~~~~v~sV~~spi~GlyeV~~--~~~i~Y-------vs-~dG~y~i~G~ 50 (60)
T d1eeja2 1 DDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSGVLY-------IT-DDGKHIIQGP 50 (60)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTEEEE-------EE-TTSCEEEESC
T ss_pred CHHHHHHHHHhcCCceeEEecCCCCCeEEEEE--CCEEEE-------Ec-CCCCEEEEeE
Confidence 567788889998764 7888888866 444333 33 3567888885
No 2
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=55.35 E-value=2.8 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccHHHHHHHhhhCCccCCCccceeeeecCEEEEeeCCeeeeeec-CCeEEEecccccchhhhhhh
Q 031135 35 DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIA-ANTWVVSGAPQTKKLQDILP 98 (165)
Q Consensus 35 dDKKlq~~LkKLg~~~I~gIeEVnmfk~d~vihF~nPkVqaS~~-aNTfvV~G~~~~K~lte~lP 98 (165)
-.++.+.+|+.||+..+.- .||+=++|.+..-+. ..-||.+|++..+.+.+|+-
T Consensus 13 ~~~~~r~tL~~LrL~k~~~----------~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~ 67 (154)
T d1vqow1 13 MHTDIQDTLEMLNIHHVNH----------CTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLA 67 (154)
T ss_dssp SCHHHHHHHHHTTCCSTTE----------EEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcCCC----------EEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHH
Confidence 4578999999999887643 677777886655443 67899999999999998875
No 3
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus subtilis [TaxId: 1423]}
Probab=41.27 E-value=20 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=33.9
Q ss_pred cHHHHHHHhhhCCccCCCccceeeee-----cC--EEEEeeC--CeeeeeecCC-----eEEEeccc
Q 031135 36 DKRLQSTLKRIGVNAIPAIEEVNIFK-----DD--VVIQFLN--PKVQASIAAN-----TWVVSGAP 88 (165)
Q Consensus 36 DKKlq~~LkKLg~~~I~gIeEVnmfk-----~d--~vihF~n--PkVqaS~~aN-----TfvV~G~~ 88 (165)
.+++...|+.|+++.|.++++.|++- .. ..|.... --||.++..+ ||++-|.|
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~~~~~~S~saYs~~~~~~i~~~~~k~NlqiAlr~~~~~~~T~i~igTP 210 (214)
T d2fpna1 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTP 210 (214)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCEEETTEEECEEEEEEC------CEEEEESS
T ss_pred HHHHHHHHHHcCCceeeeeecccEEEEEEEchhhhhhhhcCCeeEEEEEEEeecCCCCcEEEEEeee
Confidence 35888999999999999999999842 22 2223332 2367776554 79888876
No 4
>d2nrqa1 d.77.1.2 (A:4-144) Hypothetical protein SSO0741 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=40.14 E-value=18 Score=25.49 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=48.0
Q ss_pred CCCcccHHHHHHHhhhCCccCCC-ccceeeeecCEEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhccchhhH
Q 031135 31 TTTTDDKRLQSTLKRIGVNAIPA-IEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNL 109 (165)
Q Consensus 31 ~a~~dDKKlq~~LkKLg~~~I~g-IeEVnmfk~d~vihF~nPkVqaS~~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l 109 (165)
.|+.|..|+..+|..| +|. |++..+-...+-=||.|| -++++..-+.|.-.+.+-.++..|+.+.+
T Consensus 10 hATED~~kV~~AL~~~----~~~~i~~~~ie~~~~~Gh~Gnp---------I~ils~~l~kK~a~~~~~~l~~~l~~~~~ 76 (141)
T d2nrqa1 10 HETEDYNKIVNTIESF----FSPLISNSKKNVTTAQGHYGNK---------IIILEYRFDRKSGEQFFKIILEKIETSEL 76 (141)
T ss_dssp CTTSCHHHHHHHHHHH----TTTGGGGSEEEEEEEECSSSCE---------EEEEEEEECHHHHHHHHHHHHTTSCHHHH
T ss_pred EeccCHHHHHHHHHHh----cccccccCceEEEEecccCCCc---------EEEEEEEEecccHHHHHHHHHHHcCHHHH
Confidence 4568999999999876 332 333333222233456666 46778888778778888899999998877
Q ss_pred HHHHH
Q 031135 110 DNLRK 114 (165)
Q Consensus 110 ~~L~~ 114 (165)
..|..
T Consensus 77 ~~L~~ 81 (141)
T d2nrqa1 77 MLILT 81 (141)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76543
No 5
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.71 E-value=26 Score=22.03 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=34.2
Q ss_pred cccC-CCCccceec--ccccCCCCcccHHHHHHHhhhCCccCCCccceeeeecC--EEEEeeCC
Q 031135 13 VRTG-GKGSVRRKK--KAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD--VVIQFLNP 71 (165)
Q Consensus 13 ~r~G-GkGt~RRKk--K~v~k~a~~dDKKlq~~LkKLg~~~I~gIeEVnmfk~d--~vihF~nP 71 (165)
.++| |+..+.|.- ...+.. .++.-|+..+.+.| .|..|.+.++. -.++|.++
T Consensus 7 ~~~g~g~~~Ps~tl~V~nLp~~--~t~~~l~~~f~~~G-----~i~~~~~~~~~~~afV~f~~~ 63 (97)
T d1whya_ 7 GKIGYGKANPTTRLWVGGLGPN--TSLAALAREFDRFG-----SIRTIDHVKGDSFAYIQYESL 63 (97)
T ss_dssp CCCCCCCCCCCSCEEEECCCSS--CCHHHHHHHHHTTS-----CEEEEEECSSSCCEEEEESSH
T ss_pred CCCCCCCCCCCCEEEEcCCCCC--CCHHHHHHHHHhhc-----ccceEeeeccccEEEeccCCH
Confidence 3566 777776653 333444 46667999987766 47888887765 66667666
No 6
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=30.85 E-value=18 Score=22.84 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=28.0
Q ss_pred eeeecCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031135 74 QASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL 112 (165)
Q Consensus 74 qaS~~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L 112 (165)
+.-+..|+|.|.|.....++.+.|.-=|+.=..+.+..|
T Consensus 3 ~~~i~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~TigG~ 41 (84)
T d2r2za1 3 YTQVADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGY 41 (84)
T ss_dssp EEEEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHH
T ss_pred eEEECCCEEEEEeeCCHHHHHHHHCcCCCCccchhHHHH
Confidence 445678999999999999999988544443334555544
No 7
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=30.71 E-value=18 Score=22.91 Aligned_cols=30 Identities=7% Similarity=0.366 Sum_probs=23.5
Q ss_pred CeeeeeecCCeEEEecccccchhhhhhhhhh
Q 031135 71 PKVQASIAANTWVVSGAPQTKKLQDILPGII 101 (165)
Q Consensus 71 PkVqaS~~aNTfvV~G~~~~K~lte~lP~Il 101 (165)
+.|+ .+..|+|+|.|.....+|.++|.-=|
T Consensus 3 ~~I~-~~~~~~~~v~g~~~l~dl~~~~~~~l 32 (84)
T d2plia1 3 DNIH-AVSSERWRIHAATEIEDINTFFGTEY 32 (84)
T ss_dssp CSEE-EEETTEEEEETTCBHHHHHHHHCCCC
T ss_pred cceE-EeCCCEEEEEecCCHHHHHHHhCCCC
Confidence 4455 35789999999999999999985433
No 8
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=28.49 E-value=20 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=18.8
Q ss_pred ccCCCccceeeeecCEEEEeeCCeeeeeecCCeEEEecc
Q 031135 49 NAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGA 87 (165)
Q Consensus 49 ~~I~gIeEVnmfk~d~vihF~nPkVqaS~~aNTfvV~G~ 87 (165)
.+|||+=||.+ ++.++. .| ....|+|.|.
T Consensus 21 spi~GlyeV~~--~~gi~Y-------vs-~dg~y~i~G~ 49 (59)
T d1t3ba2 21 SPISGIKTAVT--DQGILY-------VS-EDGKYLFEGK 49 (59)
T ss_dssp CSSTTEECCEE--TTEECE-------EE-SSSSCEECSC
T ss_pred CCCCCeEEEEE--CCEEEE-------Ec-CCCCEEEEeE
Confidence 57899999866 344333 23 3567888875
No 9
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=26.79 E-value=16 Score=22.75 Aligned_cols=35 Identities=9% Similarity=0.311 Sum_probs=26.8
Q ss_pred cCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031135 78 AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL 112 (165)
Q Consensus 78 ~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L 112 (165)
+.++|+|.|.....+|.+.|.-=|+.-+.+.+..|
T Consensus 4 ~Dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Ti~G~ 38 (78)
T d2o1ra1 4 SDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGL 38 (78)
T ss_dssp TTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHH
T ss_pred cCCEEEEEeeCCHHHHHHHHCCCCCCccchHHHHH
Confidence 46899999999999999998655555455666654
No 10
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=24.90 E-value=21 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred ecCCeEEEecccccchhhhhhhhhhhc--cchhhHHHH
Q 031135 77 IAANTWVVSGAPQTKKLQDILPGIINQ--LGPDNLDNL 112 (165)
Q Consensus 77 ~~aNTfvV~G~~~~K~lte~lP~Il~Q--LG~d~l~~L 112 (165)
.+.|+|+|.|.....+|.++|.-=|+. -..+.+..|
T Consensus 8 ~~dg~~~v~G~~~l~dl~~~l~~~l~~e~~~~~TlgG~ 45 (85)
T d2p13a1 8 QADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGY 45 (85)
T ss_dssp CTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHH
T ss_pred cCCCeEEEEecCCHHHHHHHHCCCCCCccccceEHHHH
Confidence 467899999999999999998532322 122456555
No 11
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=24.32 E-value=15 Score=21.92 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=12.7
Q ss_pred CCcccCCCCCChhHHhh
Q 031135 139 DEVPELVAGETFEAAAE 155 (165)
Q Consensus 139 ddVPdLV~genFde~sk 155 (165)
++||||+ |-+.++|.+
T Consensus 2 ~evPdl~-G~s~~~A~~ 17 (58)
T d1pyya2 2 EEVPDMY-GWTKETAET 17 (58)
T ss_dssp CBCCCCT-TCBHHHHHH
T ss_pred CcCCCcC-CCcHHHHHH
Confidence 4799998 788888764
No 12
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=23.13 E-value=23 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=25.8
Q ss_pred ecCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031135 77 IAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL 112 (165)
Q Consensus 77 ~~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L 112 (165)
+..|+|+|.|.....++.+.|.-=|+--..|.+..|
T Consensus 3 i~d~~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~ 38 (84)
T d2rk5a1 3 IADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGF 38 (84)
T ss_dssp EETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHH
T ss_pred ecCCEEEEEeeeEHHHHHHHhCCCcccccchhHHHH
Confidence 467999999999999999998643333234455544
No 13
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=20.21 E-value=14 Score=23.00 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=17.4
Q ss_pred CeEEEecccccchhhhhhh
Q 031135 80 NTWVVSGAPQTKKLQDILP 98 (165)
Q Consensus 80 NTfvV~G~~~~K~lte~lP 98 (165)
|||+|.|.....+|.+.|.
T Consensus 1 ~s~~vdG~~~i~dl~~~l~ 19 (76)
T d2o3ga1 1 ESLTVEGALEYVELAPQLN 19 (76)
T ss_dssp CCSEEETTCBHHHHTTTTT
T ss_pred CeEEEEcCCCHHHHHHHHC
Confidence 6999999999999999885
Done!