BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031136
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFL 162
+K+F+
Sbjct: 158 SKVFV 162
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 101 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM 160
++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKV 160
Query: 161 FL 162
F+
Sbjct: 161 FV 162
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFL 162
+K+F+
Sbjct: 158 SKVFV 162
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMF 161
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+F
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKVF 161
Query: 162 L 162
+
Sbjct: 162 V 162
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFL 162
MQ +++ FTE+Q++RYE +RRSA K+ ++RL+ +ITG +S + I + GIAK+F+
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC-SVSQNVVIAMSGIAKVFV 145
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 9/62 (14%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMT----IVVCGIAKM 160
M ++ F+EDQ R+E ++RS+ Q++N+++++ S+ +S P+ IV+ GIAK+
Sbjct: 344 MNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSV-----LSAPVNQTSAIVMGGIAKV 398
Query: 161 FL 162
F+
Sbjct: 399 FV 400
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFL 162
+ + +L F E+QM RYE FRR+ L K+N+++L I +Q ++ + IV+ G +K+F+
Sbjct: 92 RTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLANQIL-NQSVTPNVAIVISGFSKVFV 149
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFL 162
+M +L+ +E+Q++RYE RRSA K+ + L+ SITG + +S + I + GIAK+F+
Sbjct: 93 RMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRSITG-RSVSENVAIAMAGIAKVFV 150
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 100 AKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK 159
A+ + + ++ +DQ NR+E F R++L K+ +++ L S +Q IS + + + + K
Sbjct: 119 AQDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKK-LASTVANQTISENIRVFLQAVGK 177
Query: 160 MF 161
++
Sbjct: 178 IY 179
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1
Length = 835
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 AAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGK-----FP 94
A+V E +D DNLES V P A++ + + + + N DVE+GK FP
Sbjct: 234 ASVPNENDDFVDNLES----DVRVQPEARLNIGSKSNSLSSDGNSNQDVEIGKSKSVIFP 289
Query: 95 SSSDP 99
S DP
Sbjct: 290 QSYDP 294
>sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens GN=TLN1 PE=1 SV=3
Length = 2541
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2
Length = 2541
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|P54939|TLN1_CHICK Talin-1 OS=Gallus gallus GN=TLN1 PE=1 SV=2
Length = 2541
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G A AVT L D +++ A G YD+ D ++V F S
Sbjct: 768 GVAATAVTQALNDLLQHIKQHATGGQPIG------------RYDQATDTILNVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGETDLENSRKLL 857
>sp|Q6PEE2|CTIF_MOUSE CBP80/20-dependent translation initiation factor OS=Mus musculus
GN=Ctif PE=1 SV=2
Length = 600
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 12 LEESPGDSPDE-LEIETQPQTGTAAGS--ATAAVTGELEDEFDNLESQAPMSVSAGPAAK 68
LE+ PGD+ LE P T T A S T + G E E + ++ P + P
Sbjct: 282 LEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERLRERPKIT 341
Query: 69 MTMS---KNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILN 110
+ S + + E+D + V VE SS P+KM ++ ILN
Sbjct: 342 LLQSSKDRLRRRLKEKDRDEVAVET----SSPQPSKMDRLMEILN 382
>sp|A8F4G0|RPOB_THELT DNA-directed RNA polymerase subunit beta OS=Thermotoga lettingae
(strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpoB PE=3
SV=1
Length = 1172
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 53 LESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVEL------GKFPS-SSDPAKMAKM 105
LES+ V A PAA+ T+ K D Y E D VE+ G+ P ++ A + +
Sbjct: 267 LESKIATVVRAHPAAQKTLEKMVDTYGEVDSSKAYVEIFRKLKPGEIPRVNTAKAYLTSL 326
Query: 106 QAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITG 142
+F + RY+ +R RR L + G
Sbjct: 327 YFSTERFELSDVGRYKINKRLT---QAYRRYLAQVKG 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,613,236
Number of Sequences: 539616
Number of extensions: 2163979
Number of successful extensions: 9466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 9268
Number of HSP's gapped (non-prelim): 284
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)