Query 031136
Match_columns 165
No_of_seqs 115 out of 159
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 99.9 1.4E-23 4.8E-28 153.8 4.7 53 112-165 1-53 (89)
2 1n1j_B NF-YC; histone-like PAI 87.8 0.21 7E-06 35.9 1.6 46 120-165 12-57 (97)
3 1ku5_A HPHA, archaeal histon; 87.6 0.25 8.7E-06 33.2 1.9 38 126-164 5-42 (70)
4 3b0c_W CENP-W, centromere prot 87.4 0.47 1.6E-05 32.5 3.2 38 126-163 3-40 (76)
5 1b67_A Protein (histone HMFA); 86.7 0.31 1.1E-05 32.3 1.9 38 126-164 1-38 (68)
6 4g92_C HAPE; transcription fac 80.8 0.51 1.8E-05 35.1 1.1 44 122-165 36-79 (119)
7 3b0c_T CENP-T, centromere prot 77.4 0.91 3.1E-05 33.6 1.6 39 124-163 4-42 (111)
8 1n1j_A NF-YB; histone-like PAI 73.1 1.5 5.1E-05 30.8 1.7 39 126-164 7-46 (93)
9 2hue_C Histone H4; mini beta s 73.0 1.8 6.3E-05 30.1 2.1 38 126-164 9-46 (84)
10 1tzy_D Histone H4-VI; histone- 68.4 2.7 9.2E-05 30.3 2.2 38 127-165 29-66 (103)
11 2yfw_B Histone H4, H4; cell cy 67.8 2.6 9E-05 30.4 2.1 37 128-165 30-66 (103)
12 1id3_B Histone H4; nucleosome 64.9 3.2 0.00011 30.2 2.0 37 127-164 28-64 (102)
13 1jfi_A Transcription regulator 59.6 4.4 0.00015 29.0 1.9 41 125-165 9-49 (98)
14 2byk_B Chrac-14; nucleosome sl 57.1 3.7 0.00013 30.9 1.2 39 126-164 8-47 (128)
15 3b0b_C CENP-X, centromere prot 54.0 8.6 0.00029 27.2 2.6 40 125-164 6-47 (81)
16 1f1e_A Histone fold protein; a 47.5 8 0.00027 30.3 1.8 37 127-164 82-118 (154)
17 2byk_A Chrac-16; nucleosome sl 42.2 3.6 0.00012 31.6 -1.0 42 124-165 16-57 (140)
18 3nrw_A Phage integrase/site-sp 32.6 70 0.0024 21.4 4.5 31 109-139 51-82 (117)
19 3zed_D Capsid protein VP3; vir 31.2 36 0.0012 28.8 3.3 41 119-162 137-184 (242)
20 4dra_E Centromere protein X; D 30.4 27 0.00093 24.9 2.1 39 126-164 11-51 (84)
21 2beq_D E2 glycoprotein; viral 28.1 62 0.0021 21.1 3.4 24 101-124 18-46 (48)
22 1wh7_A ZF-HD homeobox family p 26.6 1.1E+02 0.0038 20.6 4.7 32 111-142 23-59 (80)
23 2qxf_A Exodeoxyribonuclease I; 26.6 50 0.0017 29.5 3.6 31 110-140 417-447 (482)
24 2r18_A Capsid assembly protein 25.2 93 0.0032 24.4 4.5 49 113-162 48-114 (139)
25 1ojh_A NBLA; degradation prote 24.8 76 0.0026 21.8 3.5 40 103-142 16-57 (65)
26 1mfq_C SRP54, signal recogniti 24.0 1.1E+02 0.0037 23.3 4.6 37 99-138 57-96 (129)
27 2key_A Putative phage integras 22.3 1.2E+02 0.0043 19.3 4.2 31 109-139 49-81 (112)
28 1taf_B TFIID TBP associated fa 21.7 56 0.0019 22.3 2.4 33 126-159 5-37 (70)
29 2ovj_A Mgcracgap, RAC GTPase-a 21.4 66 0.0023 24.6 3.0 44 121-165 37-84 (201)
30 2kiw_A INT protein; alpha, str 21.4 1.5E+02 0.0052 18.8 4.4 30 109-138 41-70 (111)
31 1h3o_B Transcription initiatio 20.1 92 0.0032 21.7 3.3 36 127-162 5-40 (76)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=99.88 E-value=1.4e-23 Score=153.78 Aligned_cols=53 Identities=45% Similarity=0.795 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 112 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 112 fdeEQl~RYE~fRRS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
||+||++|||.||||+|+|++|||||++++| |+||+||+|+|+||||+|||||
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgel 53 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEV 53 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999996 7999999999999999999986
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=87.81 E-value=0.21 Score=35.88 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 120 YESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 120 YE~fRRS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
-..|+...||-+.|||||+.--....|+....++++-.+-+||-+|
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l 57 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITEL 57 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999864434689999999999999998653
No 3
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=87.63 E-value=0.25 Score=33.15 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=33.6
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGE 164 (165)
+.||++.|+||+... |...++..+..++..+++.|+-+
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~ 42 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIE 42 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHH
Confidence 579999999999986 66789999999999999998754
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=87.37 E-value=0.47 Score=32.49 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=31.8
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcc
Q 031136 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLE 163 (165)
Q Consensus 126 S~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVG 163 (165)
..||++.|+|||.++++...|+.....+|.-..-.||-
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~ 40 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLH 40 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHH
Confidence 47999999999998887778899888888887777764
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=86.69 E-value=0.31 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGE 164 (165)
+.||++.|+|||..+ +...++.....++...+..|+-+
T Consensus 1 ~~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~ 38 (68)
T 1b67_A 1 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEE 38 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHH
Confidence 469999999999998 66788988889999888888743
No 6
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=80.83 E-value=0.51 Score=35.13 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 122 SFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 122 ~fRRS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
.|+-..||-+.|||||...-....|+....++++..+-+||.+|
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L 79 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITEL 79 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHH
Confidence 37778899999999998755445788888899999899998653
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=77.42 E-value=0.91 Score=33.58 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=29.4
Q ss_pred HhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcc
Q 031136 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLE 163 (165)
Q Consensus 124 RRS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVG 163 (165)
|-..|+++.|+||+.... ...|+..+.-++..+.+.|+-
T Consensus 4 ~d~~lP~a~I~Ri~r~~g-~~rIS~~a~~~l~e~l~~f~~ 42 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHYV-KTPVTRDAYKIVEKCSERYFK 42 (111)
T ss_dssp ------CHHHHHHHHHHH-CSCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHH
Confidence 345799999999999985 468999999999999999874
No 8
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=73.08 E-value=1.5 Score=30.81 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=31.7
Q ss_pred cCCChHHHHHHHHHhhc-CccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvtg-sQsVs~nvvIaVaGiAKvFVGE 164 (165)
..||++.|+|||...+. ...|+.....++.-.+.+||-.
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~ 46 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISF 46 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHH
Confidence 46999999999999853 2468888888988888888753
No 9
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=73.00 E-value=1.8 Score=30.13 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=32.5
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGE 164 (165)
..|+++.|+||+.+. |-..|+..+.-.++.+.+.|+-+
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~ 46 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLEN 46 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHH
Confidence 469999999999986 54579999999999999998754
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=68.36 E-value=2.7 Score=30.33 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 127 ~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
.||++.|+||+.+. |-..|+..+...++.+.+.|+-+|
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V 66 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENV 66 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHH
Confidence 39999999999986 445799999999999999998653
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=67.78 E-value=2.6 Score=30.44 Aligned_cols=37 Identities=32% Similarity=0.349 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 128 f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
||++.|+||+.+. |-..|+..+...++.+.+.|+-+|
T Consensus 30 ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V 66 (103)
T 2yfw_B 30 ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESV 66 (103)
T ss_dssp CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 445799999999999999998653
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=64.91 E-value=3.2 Score=30.20 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhccc
Q 031136 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 127 ~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGE 164 (165)
.||++.|+||+.+. |-..|+..+.-.++.+.+.|+-+
T Consensus 28 ~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~ 64 (102)
T 1id3_B 28 GITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLES 64 (102)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHH
Confidence 49999999999986 44579999999999999998754
No 13
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=59.59 E-value=4.4 Score=28.98 Aligned_cols=41 Identities=12% Similarity=0.353 Sum_probs=33.0
Q ss_pred hcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 125 RS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
...||=+.|||||..--....|+....+.++...-+|+-+|
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el 49 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESL 49 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHH
Confidence 46799999999999754335799999999999999998654
No 14
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=57.08 E-value=3.7 Score=30.94 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=29.0
Q ss_pred cCCChHHHHHHHHHhh-cCccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSIT-GSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvt-gsQsVs~nvvIaVaGiAKvFVGE 164 (165)
..||++.|+|||..++ ....|+.....+|+=.+-+||-.
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~ 47 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIF 47 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHH
Confidence 4799999999999876 23468888888888888888754
No 15
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=54.03 E-value=8.6 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=33.4
Q ss_pred hcCCChHHHHHHHHHhhc--CccCCccHHHHhhhhhhhhccc
Q 031136 125 RSALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 125 RS~f~K~~IKKLinsvtg--sQsVs~nvvIaVaGiAKvFVGE 164 (165)
...|++..|.||+..... ...|+...+-+++-+-++||=|
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~E 47 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVRE 47 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHH
Confidence 678999999999998774 3478888899999999999855
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=47.47 E-value=8 Score=30.30 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhccc
Q 031136 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 127 ~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGE 164 (165)
.||++.|+||+... |...||......++.+.+.|+-+
T Consensus 82 ~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~ 118 (154)
T 1f1e_A 82 LFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEE 118 (154)
T ss_dssp CCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHH
Confidence 69999999999998 77899999999999999988754
No 17
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=42.24 E-value=3.6 Score=31.64 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=22.0
Q ss_pred HhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhcccC
Q 031136 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 124 RRS~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFVGEI 165 (165)
....||-+.|||||..--....|+....++|+-.+-+||-+|
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~L 57 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHL 57 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence 456799999999998754434688888888888888998653
No 18
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=32.55 E-value=70 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=24.5
Q ss_pred HhcCCHHHHHHHHHHHhc-CCChHHHHHHHHH
Q 031136 109 LNQFTEDQMNRYESFRRS-ALQKSNMRRLLVS 139 (165)
Q Consensus 109 l~~fdeEQl~RYE~fRRS-~f~K~~IKKLins 139 (165)
+..++.+.+.+|-.|++. ++..++|++.+..
T Consensus 51 l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~ 82 (117)
T 3nrw_A 51 MRELTGWKLDEYETFRRGSDVSPATLNGEMQT 82 (117)
T ss_dssp GGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456889999999999874 5888888777654
No 19
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=31.25 E-value=36 Score=28.78 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCh----HHHHHHHHHhhcCcc---CCccHHHHhhhhhhhhc
Q 031136 119 RYESFRRSALQK----SNMRRLLVSITGSQK---ISLPMTIVVCGIAKMFL 162 (165)
Q Consensus 119 RYE~fRRS~f~K----~~IKKLinsvtgsQs---Vs~nvvIaVaGiAKvFV 162 (165)
-|+-|-+.-..| ..|+||.++|.|+.. -|+..+ -.|++||+
T Consensus 137 ~y~dyv~~~~~~p~~~~kirRla~svyg~p~Q~papeef~---~ava~v~~ 184 (242)
T 3zed_D 137 EYEDYVRKPITRPTDMDKIRRLANSVYGLPHQEPAPDDFY---QAVVEVFA 184 (242)
T ss_pred cHHHhhccccCCCCCHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHHH
Confidence 344466666655 489999999998643 333333 45667775
No 20
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=30.41 E-value=27 Score=24.91 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHhhc--CccCCccHHHHhhhhhhhhccc
Q 031136 126 SALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFLEW 164 (165)
Q Consensus 126 S~f~K~~IKKLinsvtg--sQsVs~nvvIaVaGiAKvFVGE 164 (165)
..|++..|.||+..... ...|+.....+++-+-++||=|
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~E 51 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVE 51 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH
Confidence 47999999999997663 3478889999999999999854
No 21
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=28.11 E-value=62 Score=21.14 Aligned_cols=24 Identities=8% Similarity=0.487 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHH
Q 031136 101 KMAKMQAILNQF-----TEDQMNRYESFR 124 (165)
Q Consensus 101 k~~km~~Ll~~f-----deEQl~RYE~fR 124 (165)
+-.+++.+++++ |=++++|||.|=
T Consensus 18 Ei~~Lq~~I~~LN~slIDLe~Ln~~E~yi 46 (48)
T 2beq_D 18 EIDRLNEVAKNLNESLIDLQELGKYEQYI 46 (48)
T ss_dssp HHHHHHHHHTTGGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHccHHHhchhheee
Confidence 445677788887 569999999983
No 22
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=26.62 E-value=1.1e+02 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHh-----cCCChHHHHHHHHHhhc
Q 031136 111 QFTEDQMNRYESFRR-----SALQKSNMRRLLVSITG 142 (165)
Q Consensus 111 ~fdeEQl~RYE~fRR-----S~f~K~~IKKLinsvtg 142 (165)
.|+.+|+..-|.|.. ...+....|.-+...+|
T Consensus 23 ~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lg 59 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETG 59 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhC
Confidence 478888888877877 66666555555554453
No 23
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=26.59 E-value=50 Score=29.49 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.7
Q ss_pred hcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 031136 110 NQFTEDQMNRYESFRRSALQKSNMRRLLVSI 140 (165)
Q Consensus 110 ~~fdeEQl~RYE~fRRS~f~K~~IKKLinsv 140 (165)
..|++++..|+..||+..|...++....+.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5689999999999999999988777776654
No 24
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=25.21 E-value=93 Score=24.35 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=29.9
Q ss_pred CHHHHHHHHH-------------HHhcCCCh----HHHHHHHHHhhcCcc-CCccHHHHhhhhhhhhc
Q 031136 113 TEDQMNRYES-------------FRRSALQK----SNMRRLLVSITGSQK-ISLPMTIVVCGIAKMFL 162 (165)
Q Consensus 113 deEQl~RYE~-------------fRRS~f~K----~~IKKLinsvtgsQs-Vs~nvvIaVaGiAKvFV 162 (165)
|+.|+.=|.. |-+.-..| ..|+||.+++.|+.. -+.|-.+. -.|++||+
T Consensus 48 sp~Q~KY~~it~~~P~pge~y~dy~~~~~~~p~~~~kirrla~svyg~p~q~papeef~-dava~v~~ 114 (139)
T 2r18_A 48 SPGQLKYWQNTREIPDPNEDYLDYVHAEKSRLASEEQILRAATSIYGAPGQAEPPQAFI-DEVAKVYE 114 (139)
T ss_dssp CHHHHHHHHHHCSCCCTTCCCTTTTSCCCCCCCCHHHHHHHHHHHHCCGGGCCCCHHHH-HHHHHHHH
T ss_pred CHHHhHHHHhhccCCCCCcchhhcccCCcCCCChHHHHHHHHHHhhcCCccCCCCHHHH-HHHHHHHH
Confidence 5667777766 43333333 679999999998631 12232222 66777775
No 25
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=24.81 E-value=76 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHhcCCChHHHHHHHHHhhc
Q 031136 103 AKMQAILNQFTEDQMNRY--ESFRRSALQKSNMRRLLVSITG 142 (165)
Q Consensus 103 ~km~~Ll~~fdeEQl~RY--E~fRRS~f~K~~IKKLinsvtg 142 (165)
+.++--+..||.||...| +.||..=+..+.+|.||.+..|
T Consensus 16 ~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~ 57 (65)
T 1ojh_A 16 RSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57 (65)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 556678999999999998 8899999999999999998776
No 26
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=24.02 E-value=1.1e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHHhcCCChHHHHHHHH
Q 031136 99 PAKMAKMQAILNQFTEDQMNR---YESFRRSALQKSNMRRLLV 138 (165)
Q Consensus 99 e~k~~km~~Ll~~fdeEQl~R---YE~fRRS~f~K~~IKKLin 138 (165)
+.+-.|+..+|++||+++++. -+.+.. +-+-++||..
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii~~---~~SRk~RIA~ 96 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVFSK---QPGRIQRVAR 96 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHHHH---CTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccccC---ChHHHHHHHc
Confidence 445578889999999999987 777731 2344555543
No 27
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.33 E-value=1.2e+02 Score=19.34 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHHh--cCCChHHHHHHHHH
Q 031136 109 LNQFTEDQMNRYESFRR--SALQKSNMRRLLVS 139 (165)
Q Consensus 109 l~~fdeEQl~RYE~fRR--S~f~K~~IKKLins 139 (165)
+..++...+.+|..|-+ .++..++|++.+..
T Consensus 49 l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~ 81 (112)
T 2key_A 49 FHELTEDFLRDYLIYMKKTLCNADSTAQRNLST 81 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 45678888888888865 36777777776543
No 28
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.70 E-value=56 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhh
Q 031136 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK 159 (165)
Q Consensus 126 S~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAK 159 (165)
+.||...|+++..++ |-..+|+.++.+++--.-
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvE 37 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVS 37 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHH
Confidence 579999999999885 555899988877765433
No 29
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=21.37 E-value=66 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCccCC---c-cHHHHhhhhhhhhcccC
Q 031136 121 ESFRRSALQKSNMRRLLVSITGSQKIS---L-PMTIVVCGIAKMFLEWL 165 (165)
Q Consensus 121 E~fRRS~f~K~~IKKLinsvtgsQsVs---~-nvvIaVaGiAKvFVGEI 165 (165)
.-||.++ ++..|++|...+-.+..++ . .=+-+|+|+-|.|+-||
T Consensus 37 GIfR~sG-~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreL 84 (201)
T 2ovj_A 37 GLYRISG-CDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNL 84 (201)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTS
T ss_pred ceeeeCC-cHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhC
Confidence 4688887 4677888877764222222 1 13567899999998765
No 30
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=21.37 E-value=1.5e+02 Score=18.80 Aligned_cols=30 Identities=7% Similarity=0.207 Sum_probs=22.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 031136 109 LNQFTEDQMNRYESFRRSALQKSNMRRLLV 138 (165)
Q Consensus 109 l~~fdeEQl~RYE~fRRS~f~K~~IKKLin 138 (165)
+..++...+.+|-.+....+...++++++.
T Consensus 41 l~~It~~~i~~~~~~l~~~~s~~t~~~~~~ 70 (111)
T 2kiw_A 41 IQTIKKHDYQRFVDDISAQYSKNYVDSIVA 70 (111)
T ss_dssp GGGCCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 567788888888888766777777776654
No 31
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=20.15 E-value=92 Score=21.65 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhhhhc
Q 031136 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFL 162 (165)
Q Consensus 127 ~f~K~~IKKLinsvtgsQsVs~nvvIaVaGiAKvFV 162 (165)
-|+|..+..||+++-++..+.+.|-=++.-||=-||
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV 40 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFI 40 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 367888899999888777777777666666665555
Done!