Query 031137
Match_columns 165
No_of_seqs 82 out of 84
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g1p_A Conotoxin EVIA; three d 44.2 7.1 0.00024 23.6 0.8 14 5-18 18-31 (33)
2 2k53_A A3DK08 protein; NESG, C 22.7 21 0.00072 24.3 0.4 11 5-16 24-34 (76)
3 2auv_A Potential NAD-reducing 21.7 34 0.0012 22.7 1.3 17 9-26 50-66 (85)
4 3d9j_A RNA-binding protein 16; 19.6 53 0.0018 24.5 2.1 22 144-165 103-124 (145)
5 2km4_A Regulator of TY1 transp 18.3 54 0.0018 24.2 1.8 17 149-165 104-120 (142)
6 3h4c_A Transcription factor TF 17.4 44 0.0015 28.3 1.2 14 138-151 69-82 (260)
7 2jr3_A Pelovaterin; beta-defen 16.4 40 0.0014 21.2 0.6 11 7-17 30-40 (42)
8 1ytv_M V1AR, vasopressin V1A r 15.4 95 0.0032 22.3 2.4 14 8-21 24-37 (84)
9 4fu3_A Regulation of nuclear P 14.4 87 0.003 22.3 2.1 16 150-165 103-118 (135)
10 1m2d_A [2Fe-2S] ferredoxin; th 13.8 50 0.0017 23.1 0.6 15 10-25 53-67 (110)
No 1
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=44.25 E-value=7.1 Score=23.59 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.0
Q ss_pred chhcCCCcccCCCC
Q 031137 5 HLQQSSGCLGCFIR 18 (165)
Q Consensus 5 ~~~~~gGC~Gc~~K 18 (165)
.|.|+|.|+|-|+.
T Consensus 18 glccsgacvgvcad 31 (33)
T 1g1p_A 18 GLCCSGACVGVCAD 31 (33)
T ss_dssp CCBTTBCBSSBBCC
T ss_pred CcccCCceeEEeec
Confidence 35789999998863
No 2
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=22.73 E-value=21 Score=24.28 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=8.3
Q ss_pred chhcCCCcccCC
Q 031137 5 HLQQSSGCLGCF 16 (165)
Q Consensus 5 ~~~~~gGC~Gc~ 16 (165)
.-|||. |+||=
T Consensus 24 ~~~G~~-C~gC~ 34 (76)
T 2k53_A 24 INNGMH-CLGCP 34 (76)
T ss_dssp HHTTCC-CCSSC
T ss_pred HHcCCC-CCCCC
Confidence 348888 99985
No 3
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=21.74 E-value=34 Score=22.74 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=12.1
Q ss_pred CCCcccCCCCCCcccccC
Q 031137 9 SSGCLGCFIRPPVNTSAS 26 (165)
Q Consensus 9 ~gGC~Gc~~Kp~~i~~vd 26 (165)
-.||+|.|...| +..|+
T Consensus 50 ~~~ClG~C~~~P-~v~V~ 66 (85)
T 2auv_A 50 TLRCVGGCALAP-IVMVG 66 (85)
T ss_dssp SSSSSSSCTTSC-CCEEG
T ss_pred ECCccCcCCCCC-EEEEC
Confidence 348999998775 44455
No 4
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=19.58 E-value=53 Score=24.50 Aligned_cols=22 Identities=9% Similarity=0.437 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCC
Q 031137 144 PIPLSEMVDFLVDIWEQEGMYD 165 (165)
Q Consensus 144 PIPL~EMVdfLVDiWE~EGLyd 165 (165)
|=....-+.=|++|||+-++|+
T Consensus 103 ~~~~r~kl~rLl~iW~~r~vF~ 124 (145)
T 3d9j_A 103 PGDDKSKIVRVLNLWQKNNVFK 124 (145)
T ss_dssp CGGGHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHhcCCCCCC
Confidence 3355677888999999999885
No 5
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=18.30 E-value=54 Score=24.22 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCCCC
Q 031137 149 EMVDFLVDIWEQEGMYD 165 (165)
Q Consensus 149 EMVdfLVDiWE~EGLyd 165 (165)
.-|.=|++|||+-+.|+
T Consensus 104 ~kv~rvl~iWeer~vf~ 120 (142)
T 2km4_A 104 KKLSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhccCCcC
Confidence 34556779999999986
No 6
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=17.43 E-value=44 Score=28.33 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.9
Q ss_pred CCCCCCCCChHHHH
Q 031137 138 NKPFPQPIPLSEMV 151 (165)
Q Consensus 138 n~pF~qPIPL~EMV 151 (165)
.+--.+||||+||-
T Consensus 69 ae~~~~PiplaE~r 82 (260)
T 3h4c_A 69 AEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHTTCCCCHHHHH
T ss_pred HHHcCCCccHHHHH
Confidence 34567999999993
No 7
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=16.42 E-value=40 Score=21.21 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.6
Q ss_pred hcCCCcccCCC
Q 031137 7 QQSSGCLGCFI 17 (165)
Q Consensus 7 ~~~gGC~Gc~~ 17 (165)
.|++|=||||.
T Consensus 30 vgcsggfgccr 40 (42)
T 2jr3_A 30 VGCSGGFGCCR 40 (42)
T ss_dssp SSSCTTEEBCB
T ss_pred eeccCCcceee
Confidence 66777799984
No 8
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=15.40 E-value=95 Score=22.34 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.5
Q ss_pred cCCCcccCCCCCCc
Q 031137 8 QSSGCLGCFIRPPV 21 (165)
Q Consensus 8 ~~gGC~Gc~~Kp~~ 21 (165)
-.-.||-||.|+.+
T Consensus 24 ~~lr~fpCC~~~k~ 37 (84)
T 1ytv_M 24 QGQGSFPCCQNMKE 37 (84)
T ss_pred hhhhccccccCccc
Confidence 34489999998754
No 9
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=14.42 E-value=87 Score=22.26 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhcCCCC
Q 031137 150 MVDFLVDIWEQEGMYD 165 (165)
Q Consensus 150 MVdfLVDiWE~EGLyd 165 (165)
-|.=|+++|++-++|+
T Consensus 103 kl~kll~iW~~r~vf~ 118 (135)
T 4fu3_A 103 PLERLLNIWQERSVYG 118 (135)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhcCCCCcC
Confidence 3445889999999985
No 10
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=13.84 E-value=50 Score=23.12 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=10.8
Q ss_pred CCcccCCCCCCccccc
Q 031137 10 SGCLGCFIRPPVNTSA 25 (165)
Q Consensus 10 gGC~Gc~~Kp~~i~~v 25 (165)
.||+|.|...+. ..|
T Consensus 53 ~~ClG~C~~gP~-v~V 67 (110)
T 1m2d_A 53 TGCMNASMMGPV-VVV 67 (110)
T ss_dssp ESCCSCGGGCSC-EEE
T ss_pred CCCCCccCCCCE-EEE
Confidence 489999987764 445
Done!