Query 031137
Match_columns 165
No_of_seqs 82 out of 84
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031137.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031137hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g1pa_ g.3.6.1 (A:) Conotoxin 45.3 3.1 0.00023 23.6 0.8 13 5-17 18-30 (32)
2 d2p5zx2 b.106.1.1 (X:15-201) H 27.2 9.3 0.00068 27.5 1.0 14 151-164 156-169 (187)
3 d2idba2 d.333.1.1 (A:326-491) 19.5 22 0.0016 25.6 1.8 27 138-164 139-166 (166)
4 d1ug7a_ a.24.24.1 (A:) Domain 16.2 24 0.0017 25.4 1.2 18 131-148 105-125 (128)
5 d1uv7a_ d.67.4.1 (A:) General 14.1 57 0.0041 20.8 2.6 21 143-163 33-53 (80)
6 d1eh9a2 b.71.1.1 (A:491-557) G 12.9 26 0.0019 22.7 0.6 14 133-146 40-53 (67)
7 d1t56a2 a.121.1.1 (A:95-214) E 12.7 59 0.0043 21.7 2.5 60 97-160 41-115 (120)
8 d2v4ja2 d.58.36.2 (A:2-167) Di 11.3 52 0.0038 24.4 1.9 16 147-162 110-125 (166)
9 d1wiga1 g.39.1.3 (A:1-32) Acti 10.6 40 0.0029 18.9 0.8 9 7-15 3-11 (32)
10 d3c7ba2 d.58.36.2 (A:1-166) Di 9.6 65 0.0047 23.9 1.9 16 147-162 108-123 (166)
No 1
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=45.30 E-value=3.1 Score=23.56 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.5
Q ss_pred chhcCCCcccCCC
Q 031137 5 HLQQSSGCLGCFI 17 (165)
Q Consensus 5 ~~~~~gGC~Gc~~ 17 (165)
.|.|+|.|+|-|+
T Consensus 18 glccsgacvgvca 30 (32)
T d1g1pa_ 18 GLCCSGACVGVCA 30 (32)
T ss_dssp CCBTTBCBSSBBC
T ss_pred CccccCceeEEec
Confidence 3578999999885
No 2
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=27.16 E-value=9.3 Score=27.52 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcCCC
Q 031137 151 VDFLVDIWEQEGMY 164 (165)
Q Consensus 151 VdfLVDiWE~EGLy 164 (165)
-|||..++|+||+|
T Consensus 156 ~~Fl~RL~ee~Gi~ 169 (187)
T d2p5zx2 156 LTFVSRLLSEVGIW 169 (187)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCE
Confidence 48999999999987
No 3
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=19.53 E-value=22 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=21.9
Q ss_pred CCCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 031137 138 NKPFPQPIPL-SEMVDFLVDIWEQEGMY 164 (165)
Q Consensus 138 n~pF~qPIPL-~EMVdfLVDiWE~EGLy 164 (165)
.+.||+++.. +|+.+-..+.|++=|||
T Consensus 139 ~~~~p~~~~~~~e~~~~v~~~W~elGl~ 166 (166)
T d2idba2 139 QREWGRPIKKDPDVVAHIDAIWDELAIF 166 (166)
T ss_dssp SSCCCEECCCCHHHHHHHHHHTTTSCCC
T ss_pred cccCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 3567777754 48999999999999997
No 4
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.20 E-value=24 Score=25.42 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=14.0
Q ss_pred hhhccCCCCCCC---CCCChH
Q 031137 131 YESLLGSNKPFP---QPIPLS 148 (165)
Q Consensus 131 ye~LLgsn~pF~---qPIPL~ 148 (165)
-.+||..|+||| +||||.
T Consensus 105 Lknll~~~keFP~~v~~~~~~ 125 (128)
T d1ug7a_ 105 LKNILTYNKEFPFDVQPISGP 125 (128)
T ss_dssp HHTTTTCCSCCSSCCCCSSCC
T ss_pred HHHHhhcCCCCCcccccCCcc
Confidence 346789999998 777775
No 5
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=14.08 E-value=57 Score=20.81 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 031137 143 QPIPLSEMVDFLVDIWEQEGM 163 (165)
Q Consensus 143 qPIPL~EMVdfLVDiWE~EGL 163 (165)
.++|...++..|.++-++.|+
T Consensus 33 d~v~F~~ll~WL~~L~~~~Gi 53 (80)
T d1uv7a_ 33 QPLPFSQLVSWIAYLQERQGV 53 (80)
T ss_dssp CCBCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHhcCCe
Confidence 478999999999999999986
No 6
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=12.89 E-value=26 Score=22.72 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=11.2
Q ss_pred hccCCCCCCCCCCC
Q 031137 133 SLLGSNKPFPQPIP 146 (165)
Q Consensus 133 ~LLgsn~pF~qPIP 146 (165)
=||++|..||+.|-
T Consensus 40 LvlsSn~sFP~~I~ 53 (67)
T d1eh9a2 40 LLLSSNNSFPQHIE 53 (67)
T ss_dssp CCEESSSCSCSBCC
T ss_pred EEEecCCcCchhhh
Confidence 46788889999884
No 7
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.73 E-value=59 Score=21.69 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhcCCCCCccc--ccc-CCCeee---------c---ccchhhccCCCCCCCCCCChHHHHHHHHHHHhh
Q 031137 97 FLLWNQTRQRWIGNKKAENRT--HQV-REPKLN---------W---NATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 160 (165)
Q Consensus 97 l~~W~q~R~qWvg~~~s~~~~--~~~-rep~is---------w---natye~LLgsn~pF~qPIPL~EMVdfLVDiWE~ 160 (165)
-.+|++.|+.|+......=+. +.. ..+.++ | ..-|..+.+ ++ ..++..+.|+-|..||-.
T Consensus 41 ~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~~~~A~AL~~M~er~~~~~~~~-~~---~~~d~e~~v~tL~~iW~~ 115 (120)
T d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAG-EQ---PSVPEARVLDTLVHIWVT 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHT-CS---SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcc-CC---CCCCHHHHHHHHHHHHHH
Confidence 568999999999863211000 000 111221 1 223555544 22 237899999999999953
No 8
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.29 E-value=52 Score=24.43 Aligned_cols=16 Identities=31% Similarity=0.738 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhcC
Q 031137 147 LSEMVDFLVDIWEQEG 162 (165)
Q Consensus 147 L~EMVdfLVDiWE~EG 162 (165)
-.+....|.||||.-|
T Consensus 110 tT~~LR~LcDiWek~G 125 (166)
T d2v4ja2 110 SADYLRQLCDIWDLRG 125 (166)
T ss_dssp EHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhhhc
Confidence 4689999999999866
No 9
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=40 Score=18.89 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=6.6
Q ss_pred hcCCCcccC
Q 031137 7 QQSSGCLGC 15 (165)
Q Consensus 7 ~~~gGC~Gc 15 (165)
-|++||-+|
T Consensus 3 sgssgC~~C 11 (32)
T d1wiga1 3 SGSSGCDSC 11 (32)
T ss_dssp CSCCSCSSS
T ss_pred Cccchhhhh
Confidence 367788886
No 10
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.61 E-value=65 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHhhcC
Q 031137 147 LSEMVDFLVDIWEQEG 162 (165)
Q Consensus 147 L~EMVdfLVDiWE~EG 162 (165)
-.+....|.||||.-|
T Consensus 108 tT~~LR~LcDiWek~G 123 (166)
T d3c7ba2 108 STKALRGLCDVWEKWG 123 (166)
T ss_dssp EHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHhcc
Confidence 3688999999999866
Done!